Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NMNAT1	0	genome.wustl.edu	37	1	10032368	10032368	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10032368	10032368	A	C	SNP	NMNAT1	ENST00000492735	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	NMNAT1	HGNC	ENSG00000173614				35	0	0	25	9	26.4706
AGL	0	genome.wustl.edu	37	1	100380956	100380956	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	100380956	100380956	C	T	SNP	AGL	ENST00000294724	human	ensembl	74_37	+1	known	silent	c.4173	p.L1391	1.000	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,tigrfam_Glycogen_debranch_met	pfam_AGL/Gdb1,superfamily_6-hairpin_glycosidase-like,superfamily_Glycoside_hydrolase_SF,tigrfam_Glycogen_debranch_met	-	no_errors	AGL	HGNC	ENSG00000162688				97	0	0	71	41	36.6071
HIAT1	0	genome.wustl.edu	37	1	100533605	100533605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	100533605	100533605	G	A	SNP	HIAT1	ENST00000370152	human	ensembl	74_37	+1	known	missense	c.559	p.D187N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIAT1	HGNC	ENSG00000156875				154	0	0	72	35	32.7103
SASS6	0	genome.wustl.edu	37	1	100587965	100587965	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	100587965	100587965	A	G	SNP	SASS6	ENST00000287482	human	ensembl	74_37	-1	known	silent	c.282	p.C94	1.000	NULL	NULL	-	no_errors	SASS6	HGNC	ENSG00000156876				46	0	0	41	20	32.7869
RBP7	0	genome.wustl.edu	37	1	10068312	10068312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10068312	10068312	G	A	SNP	RBP7	ENST00000294435	human	ensembl	74_37	+1	known	missense	c.334	p.E112K	0.994	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Fatty_acid-bd	-	no_errors	RBP7	HGNC	ENSG00000162444				63	0	0	32	12	27.2727
VCAM1	0	genome.wustl.edu	37	1	101198116	101198116	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	101198116	101198116	G	A	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	silent	c.1668	p.Q556	0.417	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				127	0	0	40	36	47.3684
VCAM1	0	genome.wustl.edu	37	1	101203687	101203687	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	101203687	101203687	A	C	SNP	VCAM1	ENST00000294728	human	ensembl	74_37	+1	known	missense	c.2068	p.N690H	0.005	NULL	pfam_Ig_I-set,pfam_Ig_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_VCAM-1,prints_ICAM_VCAM_N	-	no_errors	VCAM1	HGNC	ENSG00000162692				206	0	0	126	92	42.2018
SLC30A7	0	genome.wustl.edu	37	1	101361884	101361884	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	101361884	101361884	C	T	SNP	SLC30A7	ENST00000357650	human	ensembl	74_37	+1	novel	silent	c.66	p.I22	0.989	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695				67	0	0	36	20	35.7143
SLC30A7	0	genome.wustl.edu	37	1	101362221	101362221	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	101362221	101362221	G	A	SNP	SLC30A7	ENST00000357650	human	ensembl	74_37	+1	novel	missense	c.176	p.S59N	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A7	HGNC	ENSG00000162695				38	0	0	20	13	39.3939
COL11A1	0	genome.wustl.edu	37	1	103345388	103345388	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	103345388	103345388	T	G	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.5161	p.N1721H	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				121	0	0	65	26	28.5714
COL11A1	0	genome.wustl.edu	37	1	103355106	103355106	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	103355106	103355106	A	C	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.4405	p.L1469V	0.997	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				72	0	0	62	30	32.6087
COL11A1	0	genome.wustl.edu	37	1	103412431	103412431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	103412431	103412431	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.3286	p.G1096S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				26	0	0	36	6	14.2857
KIF1B	0	genome.wustl.edu	37	1	10423363	10423363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10423363	10423363	G	A	SNP	KIF1B	ENST00000263934	human	ensembl	74_37	+1	known	missense	c.4189	p.E1397K	1.000	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523				110	0	0	69	39	36.1111
PGD	0	genome.wustl.edu	37	1	10460491	10460491	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10460491	10460491	C	A	SNP	PGD	ENST00000270776	human	ensembl	74_37	+1	known	missense	c.126	p.F42L	1.000	pfam_6PGDH_NADP-bd,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657				131	0	0	59	33	35.8696
PGD	0	genome.wustl.edu	37	1	10473290	10473290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10473290	10473290	G	A	SNP	PGD	ENST00000270776	human	ensembl	74_37	+1	known	missense	c.826	p.V276I	0.508	pfam_6PGDH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	pfam_6PGDH_C,pfam_6PGDH_NADP-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_6PGDH_decarbox	-	no_errors	PGD	HGNC	ENSG00000142657				94	0	0	38	16	29.6296
PEX14	0	genome.wustl.edu	37	1	10687419	10687419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	10687419	10687419	C	T	SNP	PEX14	ENST00000356607	human	ensembl	74_37	+1	known	missense	c.676	p.R226W	1.000	NULL	pfam_Pex14_N	-	no_errors	PEX14	HGNC	ENSG00000142655				81	0	0	42	16	27.5862
NTNG1	0	genome.wustl.edu	37	1	107867344	107867344	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	107867344	107867344	C	T	SNP	NTNG1	ENST00000370068	human	ensembl	74_37	+1	known	silent	c.687	p.F229	0.522	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG1	HGNC	ENSG00000162631				93	0	0	48	21	30.4348
VAV3	0	genome.wustl.edu	37	1	108298072	108298072	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	108298072	108298072	A	C	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.1150	p.F384V	1.000	superfamily_DH-domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				39	0	0	16	7	30.4348
SLC25A24	0	genome.wustl.edu	37	1	108728461	108728461	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	108728461	108728461	T	G	SNP	SLC25A24	ENST00000565488	human	ensembl	74_37	-1	known	missense	c.299	p.K100T	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A24	HGNC	ENSG00000085491				13	0	0	19	4	17.3913
HENMT1	0	genome.wustl.edu	37	1	109191357	109191357	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109191357	109191357	T	G	SNP	HENMT1	ENST00000370031	human	ensembl	74_37	-1	known	missense	c.1106	p.K369T	0.000	NULL	NULL	-	no_errors	HENMT1	HGNC	ENSG00000162639				104	0	0	49	31	38.75
AKNAD1	0	genome.wustl.edu	37	1	109373197	109373197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109373197	109373197	G	A	SNP	AKNAD1	ENST00000370001	human	ensembl	74_37	-1	known	missense	c.1822	p.R608C	0.033	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641				94	0	0	53	21	28.3784
GPSM2	0	genome.wustl.edu	37	1	109440141	109440141	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109440141	109440141	G	A	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	silent	c.306	p.A102	0.845	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957				45	0	0	40	14	25.9259
GPSM2	0	genome.wustl.edu	37	1	109445747	109445747	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109445747	109445747	G	T	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	splice_site	c.954-1	e8-1	1.000	-	-	-	no_errors	GPSM2	HGNC	ENSG00000121957				53	0	0	32	14	30.4348
KIAA1324	0	genome.wustl.edu	37	1	109742851	109742851	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109742851	109742851	G	T	SNP	KIAA1324	ENST00000369939	human	ensembl	74_37	+1	known	missense	c.2799	p.K933N	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324	HGNC	ENSG00000116299				158	0	0	96	36	27.2727
CELSR2	0	genome.wustl.edu	37	1	109808788	109808788	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	109808788	109808788	C	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	silent	c.5973	p.F1991	0.985	smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126				110	0	0	52	27	34.1772
GNAI3	0	genome.wustl.edu	37	1	110116549	110116549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	110116549	110116549	G	A	SNP	GNAI3	ENST00000369851	human	ensembl	74_37	+1	known	missense	c.193	p.E65K	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Fungi_Gprotein_alpha	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I,prints_Fungi_Gprotein_alpha	-	no_errors	GNAI3	HGNC	ENSG00000065135				54	0	0	51	20	28.169
EPS8L3	0	genome.wustl.edu	37	1	110294175	110294175	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	110294175	110294175	G	A	SNP	EPS8L3	ENST00000475725	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EPS8L3	HGNC	ENSG00000198758				70	0	0	19	11	36.6667
EPS8L3	0	genome.wustl.edu	37	1	110301280	110301280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	110301280	110301280	C	T	SNP	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	missense	c.470	p.R157Q	0.002	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				123	0	0	53	11	17.1875
RBM15	0	genome.wustl.edu	37	1	110884015	110884015	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	110884015	110884015	G	A	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	missense	c.1988	p.R663Q	0.153	NULL	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775				67	0	0	24	19	44.186
KCNA10	0	genome.wustl.edu	37	1	111060927	111060927	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111060927	111060927	G	T	SNP	KCNA10	ENST00000369771	human	ensembl	74_37	-1	known	silent	c.483	p.I161	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105				144	0	0	57	20	25.974
KCNA3	0	genome.wustl.edu	37	1	111216495	111216495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111216495	111216495	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.937	p.R313W	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				159	0	0	67	56	45.5285
KCNA3	0	genome.wustl.edu	37	1	111217087	111217087	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111217087	111217087	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.345	p.F115	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				126	0	0	52	27	34.1772
KCNA3	0	genome.wustl.edu	37	1	111217183	111217183	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111217183	111217183	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.249	p.C83	0.392	prints_K_chnl_volt-dep_Kv1.3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				15	0	0	12	11	47.8261
CD53	0	genome.wustl.edu	37	1	111440442	111440442	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111440442	111440442	G	A	SNP	CD53	ENST00000271324	human	ensembl	74_37	+1	known	silent	c.516	p.A172	0.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD53	HGNC	ENSG00000143119				115	0	0	71	29	29
LRIF1	0	genome.wustl.edu	37	1	111492561	111492561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111492561	111492561	C	T	SNP	LRIF1	ENST00000369763	human	ensembl	74_37	-1	known	missense	c.1781	p.G594E	0.016	NULL	NULL	-	no_errors	LRIF1	HGNC	ENSG00000121931				172	0	0	93	51	35.4167
DRAM2	0	genome.wustl.edu	37	1	111661436	111661436	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111661436	111661436	A	G	SNP	DRAM2	ENST00000286692	human	ensembl	74_37	-1	known	silent	c.684	p.R228	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM2	HGNC	ENSG00000156171				28	0	0	19	12	38.7097
MTOR	0	genome.wustl.edu	37	1	11169375	11169375	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11169375	11169375	A	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.7500	p.I2500M	0.859	pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				161	0	0	90	42	31.8182
CEPT1	0	genome.wustl.edu	37	1	111725286	111725286	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111725286	111725286	T	G	SNP	CEPT1	ENST00000483427	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255				25	0	0	10	6	37.5
ENSG00000229283	0	genome.wustl.edu	37	1	111866530	111866530	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111866530	111866530	T	G	SNP	ENSG00000229283	ENST00000426321	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.559	-	-	-	no_errors	RP5-1125M8.2	Clone_based_vega_gene	ENSG00000229283				55	0	0	16	16	50
PIFO	0	genome.wustl.edu	37	1	111889538	111889538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	111889538	111889538	C	T	SNP	PIFO	ENST00000369738	human	ensembl	74_37	+1	known	missense	c.26	p.A9V	0.000	NULL	NULL	-	no_errors	PIFO	HGNC	ENSG00000173947				122	0	0	41	18	30.5085
MTOR	0	genome.wustl.edu	37	1	11298651	11298651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11298651	11298651	G	A	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.1810	p.R604C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				52	0	0	19	9	32.1429
LRIG2	0	genome.wustl.edu	37	1	113638552	113638552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	113638552	113638552	G	A	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.860	p.R287Q	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				83	0	0	48	23	32.3944
LRIG2	0	genome.wustl.edu	37	1	113638635	113638635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	113638635	113638635	G	A	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	missense	c.943	p.E315K	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799				74	0	0	42	21	33.3333
MAGI3	0	genome.wustl.edu	37	1	114128214	114128214	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114128214	114128214	C	T	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	silent	c.759	p.N253	0.003	smart_GK/Ca_channel_bsu	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				75	0	0	43	18	29.5082
PHTF1	0	genome.wustl.edu	37	1	114246728	114246728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114246728	114246728	G	A	SNP	PHTF1	ENST00000369604	human	ensembl	74_37	-1	known	missense	c.1865	p.S622L	1.000	NULL	pfam_TF_homeodomain_male	-	no_errors	PHTF1	HGNC	ENSG00000116793				52	0	0	28	14	33.3333
DCLRE1B	0	genome.wustl.edu	37	1	114454281	114454281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114454281	114454281	C	T	SNP	DCLRE1B	ENST00000369563	human	ensembl	74_37	+1	known	missense	c.1067	p.S356F	0.990	NULL	pfam_DRMBL	-	no_errors	DCLRE1B	HGNC	ENSG00000118655				135	0	0	66	29	30.5263
SYT6	0	genome.wustl.edu	37	1	114682360	114682360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114682360	114682360	G	A	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	missense	c.389	p.A130V	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				142	0	0	86	39	31.2
TRIM33	0	genome.wustl.edu	37	1	114940495	114940495	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114940495	114940495	G	T	SNP	TRIM33	ENST00000478032	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TRIM33	HGNC	ENSG00000197323				135	0	0	124	48	27.907
TRIM33	0	genome.wustl.edu	37	1	114964188	114964188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114964188	114964188	C	T	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	missense	c.1931	p.S644N	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323				130	0	0	56	36	39.1304
TRIM33	0	genome.wustl.edu	37	1	114976274	114976274	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	114976274	114976274	A	C	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	missense	c.1005	p.N335K	1.000	smart_Bbox_C	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323				79	0	0	52	32	38.0952
TRIM33	0	genome.wustl.edu	37	1	115006983	115006983	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115006983	115006983	C	T	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	missense	c.554	p.R185H	1.000	smart_Znf_PHD,pfscan_Znf_RING	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323				74	0	0	39	43	52.439
DENND2C	0	genome.wustl.edu	37	1	115130017	115130017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115130017	115130017	G	A	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.2746	p.R916W	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				310	1	0.321543	149	85	36.3248
DENND2C	0	genome.wustl.edu	37	1	115168177	115168177	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115168177	115168177	G	T	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.429	p.F143L	0.994	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				120	0	0	59	38	39.1753
DENND2C	0	genome.wustl.edu	37	1	115168398	115168398	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115168398	115168398	T	G	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.208	p.N70H	0.048	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				207	0	0	118	63	34.8066
DENND2C	0	genome.wustl.edu	37	1	115168534	115168534	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115168534	115168534	T	G	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.72	p.K24N	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984				177	0	0	110	54	32.9268
AMPD1	0	genome.wustl.edu	37	1	115216304	115216304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115216304	115216304	C	T	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.2140	p.E714K	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				99	0	0	51	45	46.875
AMPD1	0	genome.wustl.edu	37	1	115218219	115218219	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115218219	115218219	C	A	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.1710	p.K570N	0.987	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				171	0	0	84	42	33.3333
AMPD1	0	genome.wustl.edu	37	1	115226903	115226903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115226903	115226903	A	C	SNP	AMPD1	ENST00000520113	human	ensembl	74_37	-1	known	missense	c.563	p.F188C	0.750	pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748				101	0	0	86	8	8.51064
SIKE1	0	genome.wustl.edu	37	1	115321741	115321741	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115321741	115321741	G	A	SNP	SIKE1	ENST00000462123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SIKE1	HGNC	ENSG00000052723				115	0	0	63	31	32.9787
SYCP1	0	genome.wustl.edu	37	1	115428199	115428199	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115428199	115428199	T	C	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	silent	c.954	p.H318	0.961	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				52	0	0	51	24	32
TSHB	0	genome.wustl.edu	37	1	115576140	115576140	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	115576140	115576140	A	G	SNP	TSHB	ENST00000256592	human	ensembl	74_37	+1	known	missense	c.157	p.T53A	1.000	pfam_Cys_knot,smart_Gonadotropin_bsu	pfam_Cys_knot,smart_Gonadotropin_bsu	-	no_errors	TSHB	HGNC	ENSG00000134200				203	0	0	123	59	32.4176
PTCHD2	0	genome.wustl.edu	37	1	11580781	11580781	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11580781	11580781	C	T	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	silent	c.2238	p.F746	0.998	pfam_Patched	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				62	0	0	32	13	28.8889
PTCHD2	0	genome.wustl.edu	37	1	11586750	11586750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11586750	11586750	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.2656	p.A886T	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624				331	0	0	134	78	36.7925
ATP1A1	0	genome.wustl.edu	37	1	116941321	116941321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	116941321	116941321	G	A	SNP	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	missense	c.2203	p.G735R	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399				234	0	0	108	50	31.6456
CD101	0	genome.wustl.edu	37	1	117560012	117560012	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117560012	117560012	A	C	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.1529	p.E510A	0.214	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				137	0	0	56	49	46.6667
CD101	0	genome.wustl.edu	37	1	117568169	117568169	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117568169	117568169	A	C	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.2467	p.N823H	0.087	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256				105	0	0	74	31	29.5238
TTF2	0	genome.wustl.edu	37	1	117617849	117617849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117617849	117617849	G	A	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.643	p.D215N	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				188	0	0	87	50	36.4964
TTF2	0	genome.wustl.edu	37	1	117631460	117631460	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117631460	117631460	G	A	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.2198	p.R733Q	0.979	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				181	0	0	86	63	42.2819
TTF2	0	genome.wustl.edu	37	1	117632771	117632771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117632771	117632771	A	G	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.2437	p.T813A	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				242	0	0	143	55	27.7778
TRIM45	0	genome.wustl.edu	37	1	117659354	117659354	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117659354	117659354	G	A	SNP	TRIM45	ENST00000256649	human	ensembl	74_37	-1	known	silent	c.1236	p.A412	0.989	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253				88	0	0	38	19	33.3333
DRAXIN	0	genome.wustl.edu	37	1	11772432	11772432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11772432	11772432	G	A	SNP	DRAXIN	ENST00000294485	human	ensembl	74_37	+1	known	missense	c.793	p.E265K	0.107	NULL	NULL	-	no_errors	DRAXIN	HGNC	ENSG00000162490				145	0	0	86	39	31.2
MAN1A2	0	genome.wustl.edu	37	1	117910770	117910770	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117910770	117910770	G	T	SNP	MAN1A2	ENST00000482811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	MAN1A2	HGNC	ENSG00000198162				116	0	0	60	28	31.8182
MAN1A2	0	genome.wustl.edu	37	1	117944919	117944919	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	117944919	117944919	G	A	SNP	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	silent	c.414	p.Q138	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				55	0	0	46	20	30.303
MAN1A2	0	genome.wustl.edu	37	1	118065574	118065574	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	118065574	118065574	C	T	SNP	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	nonsense	c.1921	p.R641*	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				132	0	0	77	39	33.6207
MTHFR	0	genome.wustl.edu	37	1	11851348	11851348	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	11851348	11851348	C	T	SNP	MTHFR	ENST00000376583	human	ensembl	74_37	-1	known	silent	c.1791	p.P597	1.000	NULL	pfam_Mehydrof_redctse,tigrfam_Fadh2_euk	-	no_errors	MTHFR	HGNC	ENSG00000177000				82	0	0	34	15	30.6122
SPAG17	0	genome.wustl.edu	37	1	118514668	118514668	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	118514668	118514668	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	silent	c.6144	p.V2048	0.209	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				56	0	0	28	11	28.2051
SPAG17	0	genome.wustl.edu	37	1	118583459	118583459	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	118583459	118583459	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	silent	c.3060	p.H1020	0.006	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				61	0	0	46	6	11.5385
SPAG17	0	genome.wustl.edu	37	1	118616546	118616546	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	118616546	118616546	C	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	missense	c.2316	p.K772N	0.993	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				168	0	0	119	71	37.3684
WARS2	0	genome.wustl.edu	37	1	119575586	119575586	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	119575586	119575586	T	G	SNP	WARS2	ENST00000235521	human	ensembl	74_37	-1	known	missense	c.1031	p.E344A	1.000	tigrfam_Trp-tRNA-ligase	pfam_aa-tRNA-synth_Ic,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS2	HGNC	ENSG00000116874				177	0	0	88	28	24.1379
HAO2	0	genome.wustl.edu	37	1	119927408	119927408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	119927408	119927408	C	T	SNP	HAO2	ENST00000361035	human	ensembl	74_37	+1	known	missense	c.332	p.A111V	0.675	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882				73	0	0	47	27	36.4865
HAO2	0	genome.wustl.edu	37	1	119935134	119935134	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	119935134	119935134	C	T	SNP	HAO2	ENST00000482991	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	HAO2	HGNC	ENSG00000116882				35	0	0	12	7	36.8421
HSD3B1	0	genome.wustl.edu	37	1	120056677	120056677	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	120056677	120056677	C	T	SNP	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	silent	c.537	p.G179	0.933	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857				190	0	0	90	63	41.1765
PLOD1	0	genome.wustl.edu	37	1	12024810	12024810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12024810	12024810	G	A	SNP	PLOD1	ENST00000376369	human	ensembl	74_37	+1	known	missense	c.1579	p.D527N	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD1	HGNC	ENSG00000083444				173	0	0	84	43	33.8583
HMGCS2	0	genome.wustl.edu	37	1	120298174	120298174	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	120298174	120298174	C	A	SNP	HMGCS2	ENST00000369406	human	ensembl	74_37	-1	known	missense	c.1063	p.A355S	1.000	pfam_HMG_CoA_synt_C,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240				794	0	0	429	159	27.0408
NOTCH2	0	genome.wustl.edu	37	1	120480508	120480508	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	120480508	120480508	G	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	silent	c.3309	p.V1103	0.998	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				81	0	0	46	17	26.9841
VPS13D	0	genome.wustl.edu	37	1	12328891	12328891	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12328891	12328891	A	C	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.1930	p.K644Q	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				167	0	0	82	58	41.4286
VPS13D	0	genome.wustl.edu	37	1	12337735	12337735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12337735	12337735	G	T	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.4090	p.D1364Y	0.726	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				112	0	0	77	46	37.3984
VPS13D	0	genome.wustl.edu	37	1	12395786	12395786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12395786	12395786	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.8453	p.S2818L	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				143	0	0	71	35	33.0189
AADACL4	0	genome.wustl.edu	37	1	12711190	12711190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12711190	12711190	C	T	SNP	AADACL4	ENST00000376221	human	ensembl	74_37	+1	known	missense	c.217	p.R73C	0.000	pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pirsf_Arylacetamide_deacetylase	-	no_errors	AADACL4	HGNC	ENSG00000204518				136	0	0	59	46	43.8095
PRAMEF12	0	genome.wustl.edu	37	1	12837573	12837573	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12837573	12837573	G	T	SNP	PRAMEF12	ENST00000357726	human	ensembl	74_37	+1	known	missense	c.1283	p.R428I	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726				202	1	0.492611	98	49	33.3333
HNRNPCL1	0	genome.wustl.edu	37	1	12907715	12907715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12907715	12907715	G	A	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	missense	c.428	p.S143L	0.987	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				359	1	0.277778	145	121	45.4887
HNRNPCL1	0	genome.wustl.edu	37	1	12907963	12907963	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12907963	12907963	C	A	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	missense	c.180	p.E60D	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				224	0	0	159	20	11.1732
HNRNPCL1	0	genome.wustl.edu	37	1	12908038	12908038	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12908038	12908038	C	T	SNP	HNRNPCL1	ENST00000317869	human	ensembl	74_37	-1	known	silent	c.105	p.A35	0.998	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	HNRNPCL1	HGNC	ENSG00000179172				312	0	0	243	20	7.60456
PRAMEF2	0	genome.wustl.edu	37	1	12920008	12920008	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12920008	12920008	G	T	SNP	PRAMEF2	ENST00000240189	human	ensembl	74_37	+1	known	nonsense	c.748	p.E250*	0.000	NULL	NULL	-	no_errors	PRAMEF2	HGNC	ENSG00000120952				350	2	0.568182	183	64	25.9109
PRAMEF4	0	genome.wustl.edu	37	1	12939377	12939377	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12939377	12939377	T	C	SNP	PRAMEF4	ENST00000235349	human	ensembl	74_37	-1	known	silent	c.1425	p.Q475	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073				233	0	0	149	33	18.1319
PRAMEF4	0	genome.wustl.edu	37	1	12941803	12941803	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12941803	12941803	G	A	SNP	PRAMEF4	ENST00000235349	human	ensembl	74_37	-1	known	silent	c.747	p.Y249	0.000	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073				480	0	0	249	120	32.5203
PRAMEF7	0	genome.wustl.edu	37	1	12980012	12980012	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	12980012	12980012	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	74_37	+1	known	missense	c.1204	p.G402R	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510				47	0	0	19	16	45.7143
PRAMEF6	0	genome.wustl.edu	37	1	13001306	13001306	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	13001306	13001306	A	C	SNP	PRAMEF6	ENST00000355096	human	ensembl	74_37	-1	known	missense	c.377	p.L126R	0.000	NULL	NULL	-	no_errors	PRAMEF6	HGNC	ENSG00000232423				780	0	0	439	114	20.6148
CCNL2	0	genome.wustl.edu	37	1	1326209	1326209	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	1326209	1326209	G	A	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	silent	c.696	p.F232	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				139	0	0	85	37	30.3279
PDPN	0	genome.wustl.edu	37	1	13936969	13936969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	13936969	13936969	C	T	SNP	PDPN	ENST00000294489	human	ensembl	74_37	+1	known	missense	c.517	p.P173S	0.005	pfam_Podoplanin	pfam_Podoplanin	-	no_errors	PDPN	HGNC	ENSG00000162493				120	0	0	91	33	26.6129
PDPN	0	genome.wustl.edu	37	1	13940804	13940804	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	13940804	13940804	C	T	SNP	PDPN	ENST00000488631	human	ensembl	74_37	+1	known	nonsense	c.124	p.Q42*	0.003	NULL	NULL	-	no_errors	PDPN	HGNC	ENSG00000162493				113	0	0	55	29	34.5238
PRDM2	0	genome.wustl.edu	37	1	14106701	14106701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	14106701	14106701	A	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.2411	p.K804T	0.954	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				78	0	0	56	25	30.8642
PRDM2	0	genome.wustl.edu	37	1	14108921	14108921	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	14108921	14108921	T	C	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.4631	p.V1544A	0.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				145	0	0	72	48	40
ENSG00000203849	0	genome.wustl.edu	37	1	142713738	142713738	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	142713738	142713738	T	G	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.170	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849				41	0	0	39	30	43.4783
LOC101927345	0	genome.wustl.edu	37	1	143378878	143378878	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	143378878	143378878	C	A	SNP	LOC101927345	ENST00000423394	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261				107	0	0	84	45	34.8837
ENSG00000231734	0	genome.wustl.edu	37	1	143720165	143720165	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	143720165	143720165	T	C	SNP	ENSG00000231734	ENST00000417260	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP6-206I17.2	Clone_based_vega_gene	ENSG00000231734				11	0	0	3	4	57.1429
NBPF9	0	genome.wustl.edu	37	1	144818131	144818131	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	144818131	144818131	A	C	SNP	NBPF9	ENST00000472811	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF9	HGNC	ENSG00000168614				18	0	0	10	12	54.5455
PDE4DIP	0	genome.wustl.edu	37	1	144854531	144854531	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	144854531	144854531	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.6939	p.F2313L	0.998	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				348	0	0	295	28	8.66873
PDE4DIP	0	genome.wustl.edu	37	1	144923689	144923689	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	144923689	144923689	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	splice_site	c.768+1	e6+1	1.000	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				346	0	0	286	46	13.8554
PDE4DIP	0	genome.wustl.edu	37	1	144955243	144955243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	144955243	144955243	T	C	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.191	p.D64G	1.000	pfam_Spindle_assoc	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				64	0	0	40	28	41.1765
PDE4DIP	0	genome.wustl.edu	37	1	145075016	145075016	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145075016	145075016	T	G	SNP	PDE4DIP	ENST00000369345	human	ensembl	74_37	-1	putative	missense	c.278	p.K93T	0.010	NULL	NULL	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				85	0	0	80	9	10.1124
SEC22B	0	genome.wustl.edu	37	1	145103956	145103956	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145103956	145103956	C	T	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380				44	0	0	40	12	23.0769
NBPF10	0	genome.wustl.edu	37	1	145325967	145325967	+	Silent	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145325967	145325967	G	C	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	silent	c.3840	p.L1280	0.017	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				96	0	0	84	25	22.9358
HFE2	0	genome.wustl.edu	37	1	145415691	145415691	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145415691	145415691	C	T	SNP	HFE2	ENST00000336751	human	ensembl	74_37	+1	known	silent	c.510	p.F170	1.000	pfam_RGM_N	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509				134	0	0	63	64	50.3937
HFE2	0	genome.wustl.edu	37	1	145416773	145416773	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145416773	145416773	T	G	SNP	HFE2	ENST00000336751	human	ensembl	74_37	+1	known	missense	c.1118	p.F373C	1.000	pfam_RGM_C	pfam_RGM_N,pfam_RGM_C	-	no_errors	HFE2	HGNC	ENSG00000168509				98	0	0	65	31	32.2917
TXNIP	0	genome.wustl.edu	37	1	145438759	145438759	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	145438759	145438759	C	A	SNP	TXNIP	ENST00000475171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TXNIP	HGNC	ENSG00000117289				49	0	0	32	42	56.7568
FMO5	0	genome.wustl.edu	37	1	146672742	146672742	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	146672742	146672742	A	G	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	missense	c.1175	p.V392A	1.000	pfam_Flavin_mOase-like,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				94	0	0	47	47	50
FMO5	0	genome.wustl.edu	37	1	146683979	146683979	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	146683979	146683979	A	G	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	silent	c.612	p.I204	0.002	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				133	0	0	85	84	49.7041
BCL9	0	genome.wustl.edu	37	1	147091096	147091096	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	147091096	147091096	G	T	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	nonsense	c.1135	p.E379*	1.000	pfam_BCL9_beta-catenin-bd_dom	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				199	0	0	188	48	20.339
ACP6	0	genome.wustl.edu	37	1	147119196	147119196	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	147119196	147119196	A	C	SNP	ACP6	ENST00000460583	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	ACP6	HGNC	ENSG00000162836				136	0	0	122	37	23.2704
NBPF16	0	genome.wustl.edu	37	1	148756510	148756510	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	148756510	148756510	G	A	SNP	NBPF16	ENST00000417839	human	ensembl	74_37	+1	known	silent	c.1839	p.S613	0.010	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF16	HGNC	ENSG00000203827				45	0	0	43	7	14
LOC100293748	0	genome.wustl.edu	37	1	149262414	149262414	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	149262414	149262414	A	G	SNP	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.966	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779				183	0	0	139	51	26.8421
SV2A	0	genome.wustl.edu	37	1	149879607	149879607	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	149879607	149879607	A	G	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.1531	p.Y511H	1.000	pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				166	0	0	73	74	50.3401
PLEKHO1	0	genome.wustl.edu	37	1	150128372	150128372	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150128372	150128372	T	G	SNP	PLEKHO1	ENST00000025469	human	ensembl	74_37	+1	known	missense	c.290	p.L97R	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHO1	HGNC	ENSG00000023902				102	0	0	101	19	15.8333
ANP32E	0	genome.wustl.edu	37	1	150204192	150204192	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150204192	150204192	C	A	SNP	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	nonsense	c.127	p.E43*	1.000	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401				105	0	0	99	38	27.7372
ECM1	0	genome.wustl.edu	37	1	150485203	150485203	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150485203	150485203	A	C	SNP	ECM1	ENST00000369049	human	ensembl	74_37	+1	known	missense	c.1388	p.K463T	0.989	pfam_ECM1	pfam_ECM1,superfamily_Serum_albumin-like	-	no_errors	ECM1	HGNC	ENSG00000143369				367	0	0	309	91	22.75
CTSS	0	genome.wustl.edu	37	1	150737226	150737226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150737226	150737226	A	G	SNP	CTSS	ENST00000368985	human	ensembl	74_37	-1	known	missense	c.14	p.V5A	0.000	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSS	HGNC	ENSG00000163131				158	0	0	91	82	47.3988
ARNT	0	genome.wustl.edu	37	1	150784538	150784538	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150784538	150784538	C	A	SNP	ARNT	ENST00000358595	human	ensembl	74_37	-1	known	nonsense	c.2329	p.E777*	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437				87	0	0	97	15	13.3929
SETDB1	0	genome.wustl.edu	37	1	150902487	150902487	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150902487	150902487	A	C	SNP	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	missense	c.305	p.K102T	0.948	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				155	0	0	74	105	58.6592
SETDB1	0	genome.wustl.edu	37	1	150915523	150915523	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150915523	150915523	A	C	SNP	SETDB1	ENST00000271640	human	ensembl	74_37	+1	known	missense	c.869	p.K290T	1.000	smart_Tudor	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379				139	0	0	115	52	31.1377
CERS2	0	genome.wustl.edu	37	1	150941396	150941396	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	150941396	150941396	C	T	SNP	CERS2	ENST00000271688	human	ensembl	74_37	-1	known	silent	c.171	p.E57	1.000	pirsf_Longevity_assurance_LAG1_LAC1	pfam_TLC-dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom,pfscan_Homeobox_dom	-	no_errors	CERS2	HGNC	ENSG00000143418				132	0	0	118	27	18.6207
ZNF687	0	genome.wustl.edu	37	1	151260430	151260430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151260430	151260430	C	T	SNP	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	missense	c.1663	p.R555W	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				148	0	0	58	75	56.391
RFX5	0	genome.wustl.edu	37	1	151315152	151315152	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151315152	151315152	T	C	SNP	RFX5	ENST00000290524	human	ensembl	74_37	-1	known	missense	c.1361	p.D454G	0.949	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX5	HGNC	ENSG00000143390				606	0	0	418	171	29.0323
SELENBP1	0	genome.wustl.edu	37	1	151338253	151338253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151338253	151338253	C	T	SNP	SELENBP1	ENST00000426705	human	ensembl	74_37	-1	known	missense	c.1039	p.E347K	0.998	pfam_Se-bd	pfam_Se-bd	-	no_errors	SELENBP1	HGNC	ENSG00000143416				351	0	0	263	83	23.9884
PSMB4	0	genome.wustl.edu	37	1	151372650	151372650	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151372650	151372650	C	A	SNP	PSMB4	ENST00000290541	human	ensembl	74_37	+1	known	missense	c.334	p.L112I	0.985	pfam_Proteasome_sua/b,pirsf_Proteasome_endopept_cplx_B	pfam_Proteasome_sua/b,pirsf_Proteasome_endopept_cplx_B	-	no_errors	PSMB4	HGNC	ENSG00000159377				242	0	0	180	48	21.0526
POGZ	0	genome.wustl.edu	37	1	151378310	151378310	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151378310	151378310	G	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	silent	c.3201	p.I1067	1.000	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				129	0	0	90	21	18.9189
CGN	0	genome.wustl.edu	37	1	151492667	151492667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151492667	151492667	G	A	SNP	CGN	ENST00000271636	human	ensembl	74_37	+1	known	missense	c.899	p.R300Q	0.987	NULL	pfam_Myosin_tail	-	no_errors	CGN	HGNC	ENSG00000143375				61	0	0	45	15	25
CELF3	0	genome.wustl.edu	37	1	151688369	151688369	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	151688369	151688369	T	C	SNP	CELF3	ENST00000290583	human	ensembl	74_37	-1	known	missense	c.128	p.Y43C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF3	HGNC	ENSG00000159409				125	0	0	74	51	40.8
TCHHL1	0	genome.wustl.edu	37	1	152057614	152057614	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152057614	152057614	G	T	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	silent	c.2544	p.V848	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898				162	0	0	111	28	20.1439
TCHHL1	0	genome.wustl.edu	37	1	152060019	152060019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152060019	152060019	G	A	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.139	p.P47S	1.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898				80	0	0	84	31	26.9565
HRNR	0	genome.wustl.edu	37	1	152185824	152185824	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152185824	152185824	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	nonsense	c.8281	p.R2761*	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				290	0	0	120	144	54.5455
HRNR	0	genome.wustl.edu	37	1	152187700	152187700	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152187700	152187700	T	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.6405	p.Q2135	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				895	0	0	835	135	13.9175
HRNR	0	genome.wustl.edu	37	1	152188414	152188414	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152188414	152188414	G	A	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	silent	c.5691	p.Y1897	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				857	1	0.11655	811	237	22.6145
FLG	0	genome.wustl.edu	37	1	152275925	152275925	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152275925	152275925	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11437	p.T3813A	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				725	0	0	587	161	21.5241
FLG	0	genome.wustl.edu	37	1	152276355	152276355	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152276355	152276355	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.11007	p.G3669	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				494	1	0.20202	352	151	30.0199
FLG	0	genome.wustl.edu	37	1	152279151	152279151	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152279151	152279151	A	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.8211	p.S2737	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				280	0	0	244	37	13.1673
FLG	0	genome.wustl.edu	37	1	152279605	152279605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152279605	152279605	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.7757	p.S2586F	0.029	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				283	0	0	139	145	51.0563
FLG	0	genome.wustl.edu	37	1	152285754	152285754	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152285754	152285754	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.1608	p.V536	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				825	0	0	587	199	25.3181
FLG	0	genome.wustl.edu	37	1	152286132	152286132	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152286132	152286132	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.1230	p.S410	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				599	0	0	304	378	55.4252
FLG	0	genome.wustl.edu	37	1	152286754	152286754	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152286754	152286754	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.608	p.R203I	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				77	0	0	51	68	57.1429
CRNN	0	genome.wustl.edu	37	1	152382288	152382288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152382288	152382288	G	A	SNP	CRNN	ENST00000271835	human	ensembl	74_37	-1	known	missense	c.1270	p.R424C	0.000	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CRNN	HGNC	ENSG00000143536				97	0	0	92	26	22.0339
KPRP	0	genome.wustl.edu	37	1	152732460	152732460	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152732460	152732460	C	T	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	silent	c.396	p.F132	0.032	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				379	0	0	174	216	55.3846
LCE1B	0	genome.wustl.edu	37	1	152784956	152784956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152784956	152784956	C	T	SNP	LCE1B	ENST00000360090	human	ensembl	74_37	+1	known	missense	c.34	p.P12S	1.000	NULL	NULL	-	no_errors	LCE1B	HGNC	ENSG00000196734				171	0	0	99	106	51.7073
SMCP	0	genome.wustl.edu	37	1	152856943	152856943	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152856943	152856943	C	T	SNP	SMCP	ENST00000368765	human	ensembl	74_37	+1	known	silent	c.45	p.G15	0.000	NULL	NULL	-	no_errors	SMCP	HGNC	ENSG00000163206				146	0	0	113	35	23.6486
SPRR3	0	genome.wustl.edu	37	1	152975767	152975767	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	152975767	152975767	A	G	SNP	SPRR3	ENST00000295367	human	ensembl	74_37	+1	known	missense	c.271	p.T91A	0.000	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR3	HGNC	ENSG00000163209				107	0	0	98	19	16.2393
SPRR2A	0	genome.wustl.edu	37	1	153029005	153029005	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153029005	153029005	C	T	SNP	SPRR2A	ENST00000392653	human	ensembl	74_37	-1	known	silent	c.207	p.P69	1.000	NULL	NULL	-	no_errors	SPRR2A	HGNC	ENSG00000241794				219	0	0	150	48	24.2424
PGLYRP4	0	genome.wustl.edu	37	1	153314133	153314133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153314133	153314133	C	T	SNP	PGLYRP4	ENST00000359650	human	ensembl	74_37	-1	known	missense	c.595	p.A199T	0.629	pfam_Amidase_domain,superfamily_Amidase_domain,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP4	HGNC	ENSG00000163218				175	0	0	125	44	26.0355
S100A8	0	genome.wustl.edu	37	1	153363166	153363166	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153363166	153363166	T	G	SNP	S100A8	ENST00000477801	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	S100A8	HGNC	ENSG00000143546				32	0	0	19	10	34.4828
S100A7A	0	genome.wustl.edu	37	1	153391694	153391694	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153391694	153391694	T	G	SNP	S100A7A	ENST00000329256	human	ensembl	74_37	+1	known	missense	c.215	p.F72C	0.101	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A7A	HGNC	ENSG00000184330				97	0	0	39	61	61
S100A7	0	genome.wustl.edu	37	1	153430395	153430395	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153430395	153430395	T	C	SNP	S100A7	ENST00000368722	human	ensembl	74_37	-1	known	missense	c.193	p.N65D	0.007	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	S100A7	HGNC	ENSG00000143556				93	0	0	90	26	22.4138
ILF2	0	genome.wustl.edu	37	1	153638198	153638198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153638198	153638198	G	A	SNP	ILF2	ENST00000361891	human	ensembl	74_37	-1	known	missense	c.401	p.A134V	1.000	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	pfam_DZF,smart_DZF,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	ILF2	HGNC	ENSG00000143621				160	0	0	137	42	23.4637
NPR1	0	genome.wustl.edu	37	1	153662791	153662791	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153662791	153662791	G	T	SNP	NPR1	ENST00000368680	human	ensembl	74_37	+1	known	missense	c.2964	p.K988N	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,prints_Ntpep_rcpt,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	NPR1	HGNC	ENSG00000169418				10	0	0	5	4	44.4444
INTS3	0	genome.wustl.edu	37	1	153719761	153719761	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153719761	153719761	T	C	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.439	p.W147R	1.000	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				75	0	0	55	18	24.6575
DENND4B	0	genome.wustl.edu	37	1	153913426	153913426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153913426	153913426	G	A	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	missense	c.1280	p.S427L	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				20	0	0	9	9	50
RPS27	0	genome.wustl.edu	37	1	153963678	153963678	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	153963678	153963678	T	G	SNP	RPS27	ENST00000368567	human	ensembl	74_37	+1	known	missense	c.94	p.F32V	1.000	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd	pfam_Ribosomal_S27e,superfamily_Ribosomal_zn-bd	-	no_errors	RPS27	HGNC	ENSG00000177954				21	0	0	36	6	14.2857
NUP210L	0	genome.wustl.edu	37	1	154026819	154026819	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154026819	154026819	A	G	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.3368	p.V1123A	1.000	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				104	0	0	128	9	6.56934
NUP210L	0	genome.wustl.edu	37	1	154112362	154112362	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154112362	154112362	C	A	SNP	NUP210L	ENST00000368559	human	ensembl	74_37	-1	known	missense	c.633	p.E211D	1.000	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,smart_Big_2	-	no_errors	NUP210L	HGNC	ENSG00000143552				424	1	0.235294	246	277	52.9637
TPM3	0	genome.wustl.edu	37	1	154141803	154141803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154141803	154141803	C	T	SNP	TPM3	ENST00000368530	human	ensembl	74_37	-1	known	missense	c.832	p.A278T	1.000	pfam_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549				101	0	0	43	62	59.0476
TPM3	0	genome.wustl.edu	37	1	154163762	154163762	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154163762	154163762	T	G	SNP	TPM3	ENST00000368530	human	ensembl	74_37	-1	known	missense	c.143	p.Q48P	1.000	NULL	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM3	HGNC	ENSG00000143549				159	0	0	122	29	19.2053
ATP8B2	0	genome.wustl.edu	37	1	154315667	154315667	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154315667	154315667	G	A	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.1631	p.R544H	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515				117	0	0	80	49	37.9845
KAZN	0	genome.wustl.edu	37	1	15441017	15441017	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	15441017	15441017	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	silent	c.2214	p.F738	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337				29	0	0	16	5	23.8095
TDRD10	0	genome.wustl.edu	37	1	154493951	154493951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154493951	154493951	C	T	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	missense	c.365	p.P122L	0.001	NULL	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				256	1	0.389105	237	55	18.8356
TDRD10	0	genome.wustl.edu	37	1	154517377	154517377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154517377	154517377	G	A	SNP	TDRD10	ENST00000368480	human	ensembl	74_37	+1	known	missense	c.904	p.D302N	0.000	pfam_Tudor	pfam_Tudor,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TDRD10	HGNC	ENSG00000163239				136	0	0	85	17	16.6667
CHRNB2	0	genome.wustl.edu	37	1	154543740	154543740	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154543740	154543740	G	A	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	silent	c.441	p.P147	0.405	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				172	0	0	77	23	23
KCNN3	0	genome.wustl.edu	37	1	154685971	154685971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154685971	154685971	T	C	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	missense	c.1868	p.D623G	1.000	pfam_CaM-bd_dom,superfamily_CaM-bd_dom	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				135	0	0	74	23	23.7113
KCNN3	0	genome.wustl.edu	37	1	154744733	154744733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154744733	154744733	C	T	SNP	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	missense	c.1166	p.R389H	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603				67	0	0	31	34	52.3077
FLAD1	0	genome.wustl.edu	37	1	154960706	154960706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	154960706	154960706	C	A	SNP	FLAD1	ENST00000405236	human	ensembl	74_37	+1	known	missense	c.201	p.F67L	0.997	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	pfam_Mopterin-bd_dom,superfamily_Mopterin-bd_dom,smart_Mopterin-bd_dom	-	no_errors	FLAD1	HGNC	ENSG00000160688				154	0	0	126	39	23.6364
FAM189B	0	genome.wustl.edu	37	1	155223732	155223732	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	155223732	155223732	A	G	SNP	FAM189B	ENST00000361361	human	ensembl	74_37	-1	known	missense	c.431	p.L144P	0.880	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767				102	0	0	77	26	25.2427
FDPS	0	genome.wustl.edu	37	1	155288068	155288068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	155288068	155288068	G	A	SNP	FDPS	ENST00000356657	human	ensembl	74_37	+1	known	missense	c.670	p.E224K	0.999	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	FDPS	HGNC	ENSG00000160752				111	0	0	101	22	17.8862
ASH1L	0	genome.wustl.edu	37	1	155319149	155319149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	155319149	155319149	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.7538	p.A2513V	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				115	0	0	61	61	50
TMEM51	0	genome.wustl.edu	37	1	15541819	15541819	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	15541819	15541819	T	G	SNP	TMEM51	ENST00000376008	human	ensembl	74_37	+1	known	missense	c.236	p.L79R	0.997	NULL	NULL	-	no_errors	TMEM51	HGNC	ENSG00000171729				128	0	0	97	37	27.6119
ASH1L	0	genome.wustl.edu	37	1	155448772	155448772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	155448772	155448772	G	A	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.3889	p.R1297C	1.000	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				181	0	0	106	131	55.2743
MSTO1	0	genome.wustl.edu	37	1	155581322	155581322	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	155581322	155581322	T	G	SNP	MSTO1	ENST00000465137	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MSTO1	HGNC	ENSG00000125459				52	0	0	43	6	12.2449
MEX3A	0	genome.wustl.edu	37	1	156047038	156047038	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156047038	156047038	T	C	SNP	MEX3A	ENST00000532414	human	ensembl	74_37	-1	known	missense	c.890	p.E297G	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3A	HGNC	ENSG00000254726				120	0	0	73	21	22.3404
PAQR6	0	genome.wustl.edu	37	1	156214957	156214957	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156214957	156214957	G	A	SNP	PAQR6	ENST00000335852	human	ensembl	74_37	-1	known	silent	c.267	p.F89	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR6	HGNC	ENSG00000160781				134	0	0	98	22	18.3333
CCT3	0	genome.wustl.edu	37	1	156279094	156279094	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156279094	156279094	T	C	SNP	CCT3	ENST00000295688	human	ensembl	74_37	-1	known	missense	c.1534	p.T512A	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468				131	0	0	51	63	55.2632
RHBG	0	genome.wustl.edu	37	1	156339125	156339125	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156339125	156339125	C	A	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.85	p.L29I	1.000	pfam_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				66	0	0	49	15	23.4375
C1orf61	0	genome.wustl.edu	37	1	156376906	156376906	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156376906	156376906	G	T	SNP	C1orf61	ENST00000368243	human	ensembl	74_37	-1	known	missense	c.389	p.S130Y	0.025	NULL	NULL	-	no_errors	C1orf61	HGNC	ENSG00000125462				70	0	0	57	19	25
IQGAP3	0	genome.wustl.edu	37	1	156520055	156520055	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156520055	156520055	C	A	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.1823	p.R608I	0.817	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				46	0	0	23	25	52.0833
IQGAP3	0	genome.wustl.edu	37	1	156533432	156533432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156533432	156533432	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.532	p.E178K	1.000	superfamily_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				49	0	0	33	8	19.5122
BCAN	0	genome.wustl.edu	37	1	156616856	156616856	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156616856	156616856	G	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.355	p.D119N	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				49	0	0	23	16	41.0256
BCAN	0	genome.wustl.edu	37	1	156616943	156616943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156616943	156616943	G	A	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	missense	c.442	p.D148N	0.991	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				58	0	0	32	13	28.8889
BCAN	0	genome.wustl.edu	37	1	156627954	156627954	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156627954	156627954	C	T	SNP	BCAN	ENST00000329117	human	ensembl	74_37	+1	known	silent	c.2328	p.S776	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,prints_Link,prints_AntifreezeII,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom	-	no_errors	BCAN	HGNC	ENSG00000132692				101	0	0	75	16	17.5824
NES	0	genome.wustl.edu	37	1	156641598	156641598	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156641598	156641598	C	A	SNP	NES	ENST00000368223	human	ensembl	74_37	-1	known	missense	c.2382	p.E794D	0.940	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				97	0	0	44	47	51.6484
RRNAD1	0	genome.wustl.edu	37	1	156705540	156705540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156705540	156705540	G	A	SNP	RRNAD1	ENST00000368216	human	ensembl	74_37	+1	known	missense	c.1145	p.R382Q	1.000	NULL	NULL	-	no_errors	RRNAD1	HGNC	ENSG00000143303				122	0	0	89	31	25.8333
LRRC71	0	genome.wustl.edu	37	1	156902367	156902367	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	156902367	156902367	G	A	SNP	LRRC71	ENST00000490146	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC71	HGNC	ENSG00000160838				186	0	0	56	82	59.4203
FCRL5	0	genome.wustl.edu	37	1	157514687	157514687	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157514687	157514687	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	missense	c.493	p.R165C	0.001	smart_Ig_sub,smart_Ig_sub2	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297				157	0	0	101	128	55.8952
FCRL4	0	genome.wustl.edu	37	1	157548340	157548340	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157548340	157548340	G	T	SNP	FCRL4	ENST00000448509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.920	-	-	-	no_errors	FCRL4	HGNC	ENSG00000163518				75	0	0	64	31	32.6316
FCRL3	0	genome.wustl.edu	37	1	157648720	157648720	+	RNA	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157648720	157648720	A	T	SNP	FCRL3	ENST00000468507	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856				84	0	0	42	41	49.3976
FCRL3	0	genome.wustl.edu	37	1	157666827	157666827	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157666827	157666827	A	G	SNP	FCRL3	ENST00000473231	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL3	HGNC	ENSG00000160856				22	0	0	15	15	50
FCRL2	0	genome.wustl.edu	37	1	157719465	157719465	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157719465	157719465	C	A	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	nonsense	c.1282	p.E428*	0.018	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				65	0	0	59	23	28.0488
FCRL2	0	genome.wustl.edu	37	1	157740375	157740375	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157740375	157740375	T	G	SNP	FCRL2	ENST00000361516	human	ensembl	74_37	-1	known	missense	c.134	p.K45T	0.000	smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL2	HGNC	ENSG00000132704				56	0	0	81	7	7.95455
FCRL1	0	genome.wustl.edu	37	1	157767670	157767670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157767670	157767670	C	T	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	missense	c.1174	p.E392K	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534				89	0	0	53	59	52.6786
FCRL1	0	genome.wustl.edu	37	1	157773935	157773935	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	157773935	157773935	C	T	SNP	FCRL1	ENST00000489998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FCRL1	HGNC	ENSG00000163534				89	0	0	62	16	20.5128
CELA2B	0	genome.wustl.edu	37	1	15809762	15809762	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	15809762	15809762	C	T	SNP	CELA2B	ENST00000375910	human	ensembl	74_37	+1	known	silent	c.360	p.N120	0.773	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2B	HGNC	ENSG00000215704				169	0	0	113	23	16.9118
CD1D	0	genome.wustl.edu	37	1	158151317	158151317	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158151317	158151317	A	G	SNP	CD1D	ENST00000368171	human	ensembl	74_37	+1	known	missense	c.134	p.D45G	0.001	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1D	HGNC	ENSG00000158473				343	1	0.290698	245	70	22.2222
CD1B	0	genome.wustl.edu	37	1	158299693	158299693	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158299693	158299693	G	A	SNP	CD1B	ENST00000368168	human	ensembl	74_37	-1	known	nonsense	c.556	p.R186*	0.000	superfamily_MHC_I/II-like_Ag-recog,pfscan_Ig-like_dom	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1B	HGNC	ENSG00000158485				204	0	0	114	139	54.9407
OR6Y1	0	genome.wustl.edu	37	1	158517116	158517116	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158517116	158517116	T	G	SNP	OR6Y1	ENST00000302617	human	ensembl	74_37	-1	known	silent	c.780	p.T260	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6Y1	HGNC	ENSG00000197532				164	0	0	125	39	23.7805
SPTA1	0	genome.wustl.edu	37	1	158592868	158592868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158592868	158592868	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6025	p.R2009C	0.997	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				499	0	0	492	109	18.1364
SPTA1	0	genome.wustl.edu	37	1	158606495	158606495	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158606495	158606495	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.5246	p.Q1749P	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				207	0	0	117	123	51.25
SPTA1	0	genome.wustl.edu	37	1	158621249	158621249	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158621249	158621249	T	C	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3385	p.T1129A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				182	0	0	146	49	25.1282
SPTA1	0	genome.wustl.edu	37	1	158623098	158623098	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158623098	158623098	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3154	p.N1052H	0.998	superfamily_SH3_domain,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				194	0	0	98	85	46.4481
SPTA1	0	genome.wustl.edu	37	1	158623119	158623119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158623119	158623119	G	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3133	p.R1045W	0.004	superfamily_SH3_domain,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				168	0	0	108	44	28.9474
SPTA1	0	genome.wustl.edu	37	1	158639264	158639264	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158639264	158639264	C	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.1767	p.E589D	0.991	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				325	1	0.306748	305	68	18.2306
OR6K2	0	genome.wustl.edu	37	1	158669933	158669933	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158669933	158669933	C	T	SNP	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	silent	c.510	p.S170	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171				114	0	0	71	57	44.5312
OR6K3	0	genome.wustl.edu	37	1	158687804	158687804	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158687804	158687804	G	T	SNP	OR6K3	ENST00000368146	human	ensembl	74_37	-1	known	silent	c.150	p.I50	0.855	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K3	HGNC	ENSG00000203757				144	0	0	163	41	20.098
OR6K6	0	genome.wustl.edu	37	1	158725631	158725631	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158725631	158725631	G	A	SNP	OR6K6	ENST00000368144	human	ensembl	74_37	+1	known	silent	c.1026	p.G342	0.044	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K6	HGNC	ENSG00000180433				94	0	0	77	16	17.2043
OR6N2	0	genome.wustl.edu	37	1	158746725	158746725	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158746725	158746725	C	A	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	missense	c.701	p.R234I	0.811	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				72	0	0	63	25	28.4091
OR6N2	0	genome.wustl.edu	37	1	158746739	158746739	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158746739	158746739	T	G	SNP	OR6N2	ENST00000339258	human	ensembl	74_37	-1	known	missense	c.687	p.K229N	0.984	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N2	HGNC	ENSG00000188340				74	0	0	83	14	14.433
DNAJC16	0	genome.wustl.edu	37	1	15874828	15874828	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	15874828	15874828	A	G	SNP	DNAJC16	ENST00000375847	human	ensembl	74_37	+1	known	missense	c.928	p.T310A	0.988	NULL	pfam_DnaJ_domain,pfam_Thioredoxin_domain,superfamily_DnaJ_domain,superfamily_Thioredoxin-like_fold,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC16	HGNC	ENSG00000116138				78	0	0	53	16	23.1884
MNDA	0	genome.wustl.edu	37	1	158815580	158815580	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158815580	158815580	G	T	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.774	p.E258D	0.014	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				62	0	0	58	47	44.7619
MNDA	0	genome.wustl.edu	37	1	158817600	158817600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	158817600	158817600	A	G	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.1070	p.H357R	0.002	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				168	1	0.591716	123	35	22.1519
AIM2	0	genome.wustl.edu	37	1	159043205	159043205	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159043205	159043205	G	T	SNP	AIM2	ENST00000368130	human	ensembl	74_37	-1	known	missense	c.85	p.L29I	0.000	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_NA-bd_OB-fold,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568				142	0	0	84	79	48.4663
CADM3	0	genome.wustl.edu	37	1	159162412	159162412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159162412	159162412	G	A	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	missense	c.376	p.E126K	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				143	0	0	96	22	18.6441
DARC	0	genome.wustl.edu	37	1	159176026	159176026	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159176026	159176026	T	G	SNP	DARC	ENST00000368121	human	ensembl	74_37	+1	known	missense	c.803	p.V268G	0.925	NULL	prints_Duffy_chemokine_rcpt	-	no_errors	DARC	HGNC	ENSG00000213088				248	0	0	164	51	23.7209
DDI2	0	genome.wustl.edu	37	1	15964914	15964914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	15964914	15964914	G	A	SNP	DDI2	ENST00000480945	human	ensembl	74_37	+1	known	missense	c.745	p.A249T	1.000	pfam_Peptidase_aspartic_DDI1-type,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,pfam_Ubiquitin_dom,superfamily_Peptidase_aspartic_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI2	HGNC	ENSG00000197312				367	0	0	320	99	23.6277
CRP	0	genome.wustl.edu	37	1	159683518	159683518	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159683518	159683518	C	A	SNP	CRP	ENST00000255030	human	ensembl	74_37	-1	known	missense	c.472	p.D158Y	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693				520	0	0	407	155	27.5801
FCRL6	0	genome.wustl.edu	37	1	159778115	159778115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159778115	159778115	C	T	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.200	p.T67I	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				56	0	0	36	39	52
FCRL6	0	genome.wustl.edu	37	1	159778757	159778757	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159778757	159778757	T	G	SNP	FCRL6	ENST00000368106	human	ensembl	74_37	+1	known	missense	c.326	p.F109C	0.985	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL6	HGNC	ENSG00000181036				87	0	0	53	28	34.5679
CCDC19	0	genome.wustl.edu	37	1	159846352	159846352	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159846352	159846352	A	C	SNP	CCDC19	ENST00000368099	human	ensembl	74_37	-1	known	missense	c.1346	p.I449S	1.000	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085				57	0	0	36	15	29.4118
CCDC19	0	genome.wustl.edu	37	1	159846428	159846428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159846428	159846428	G	A	SNP	CCDC19	ENST00000368099	human	ensembl	74_37	-1	known	missense	c.1270	p.R424W	0.987	NULL	NULL	-	no_errors	CCDC19	HGNC	ENSG00000213085				54	0	0	43	20	31.746
SLAMF9	0	genome.wustl.edu	37	1	159922090	159922090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	159922090	159922090	A	G	SNP	SLAMF9	ENST00000368093	human	ensembl	74_37	-1	known	missense	c.626	p.V209A	0.001	pfscan_Ig-like_dom	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF9	HGNC	ENSG00000162723				146	0	0	122	31	20.2614
ATP1A2	0	genome.wustl.edu	37	1	160097591	160097591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160097591	160097591	G	A	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.998	p.G333E	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				155	0	0	50	87	63.5036
ATP1A2	0	genome.wustl.edu	37	1	160099926	160099926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160099926	160099926	G	T	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.1496	p.S499I	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				157	0	0	121	27	18.2432
ATP1A4	0	genome.wustl.edu	37	1	160125849	160125849	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160125849	160125849	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	silent	c.426	p.I142	0.023	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681				82	0	0	71	24	25.2632
CASQ1	0	genome.wustl.edu	37	1	160160780	160160780	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160160780	160160780	C	T	SNP	CASQ1	ENST00000368078	human	ensembl	74_37	+1	known	missense	c.239	p.A80V	1.000	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Calsequestrin	-	no_errors	CASQ1	HGNC	ENSG00000143318				64	0	0	51	23	31.0811
PEX19	0	genome.wustl.edu	37	1	160252819	160252819	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160252819	160252819	G	A	SNP	PEX19	ENST00000368072	human	ensembl	74_37	-1	known	silent	c.261	p.F87	0.550	pfam_Pex19	pfam_Pex19	-	no_errors	PEX19	HGNC	ENSG00000162735				113	0	0	71	23	24.4681
COPA	0	genome.wustl.edu	37	1	160268902	160268902	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160268902	160268902	T	G	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	missense	c.1847	p.K616T	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				168	0	0	165	52	23.9631
CD84	0	genome.wustl.edu	37	1	160523839	160523839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160523839	160523839	C	A	SNP	CD84	ENST00000534968	human	ensembl	74_37	-1	known	missense	c.144	p.K48N	0.022	pfscan_Ig-like_dom	pfscan_Ig-like_dom	-	no_errors	CD84	HGNC	ENSG00000066294				123	0	0	83	31	27.193
SLAMF1	0	genome.wustl.edu	37	1	160604606	160604606	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160604606	160604606	A	G	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.497	p.V166A	0.002	pfscan_Ig-like_dom	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				188	0	0	105	22	17.3228
SLAMF1	0	genome.wustl.edu	37	1	160604614	160604614	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160604614	160604614	G	A	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	silent	c.489	p.G163	0.943	pfscan_Ig-like_dom	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090				182	0	0	82	47	36.4341
SLAMF7	0	genome.wustl.edu	37	1	160720183	160720183	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160720183	160720183	C	A	SNP	SLAMF7	ENST00000368043	human	ensembl	74_37	+1	known	missense	c.739	p.L247I	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	SLAMF7	HGNC	ENSG00000026751				228	0	0	240	55	18.6441
LY9	0	genome.wustl.edu	37	1	160793289	160793289	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160793289	160793289	C	A	SNP	LY9	ENST00000263285	human	ensembl	74_37	+1	known	silent	c.1533	p.L511	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY9	HGNC	ENSG00000122224				64	0	0	51	21	29.1667
CD244	0	genome.wustl.edu	37	1	160811101	160811101	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160811101	160811101	T	C	SNP	CD244	ENST00000368033	human	ensembl	74_37	-1	known	missense	c.569	p.D190G	0.001	pfscan_Ig-like_dom	pfam_NK_rcpt_2B4_Ig_dom,pfscan_Ig-like_dom	-	no_errors	CD244	HGNC	ENSG00000122223				221	0	0	105	99	48.5294
F11R	0	genome.wustl.edu	37	1	160968840	160968840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	160968840	160968840	C	T	SNP	F11R	ENST00000368026	human	ensembl	74_37	-1	known	missense	c.857	p.R286Q	0.320	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	F11R	HGNC	ENSG00000158769				83	0	0	36	46	56.0976
ARHGAP30	0	genome.wustl.edu	37	1	161017765	161017765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161017765	161017765	G	A	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.3046	p.R1016W	0.998	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				120	0	0	84	34	28.8136
ARHGAP30	0	genome.wustl.edu	37	1	161022287	161022287	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161022287	161022287	A	C	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.883	p.L295V	0.996	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				322	0	0	322	20	5.84795
ARHGAP30	0	genome.wustl.edu	37	1	161029440	161029440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161029440	161029440	C	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.164	p.R55H	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				85	0	0	41	41	50
PVRL4	0	genome.wustl.edu	37	1	161044462	161044462	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161044462	161044462	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	silent	c.939	p.Y313	0.989	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				73	0	0	70	16	18.6047
APOA2	0	genome.wustl.edu	37	1	161193167	161193167	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161193167	161193167	G	A	SNP	APOA2	ENST00000367990	human	ensembl	74_37	-1	known	silent	c.25	p.L9	0.955	NULL	pfam_ApoA-II	-	no_errors	APOA2	HGNC	ENSG00000158874				59	0	0	42	9	17.6471
FCGR3A	0	genome.wustl.edu	37	1	161512836	161512836	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161512836	161512836	T	G	SNP	FCGR3A	ENST00000367969	human	ensembl	74_37	-1	known	missense	c.839	p.K280T	0.001	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3A	HGNC	ENSG00000203747				179	0	0	132	56	29.7872
FCGR3A	0	genome.wustl.edu	37	1	161518349	161518349	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	161518349	161518349	A	C	SNP	FCGR3A	ENST00000367969	human	ensembl	74_37	-1	known	missense	c.289	p.F97V	0.291	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR3A	HGNC	ENSG00000203747				506	0	0	465	26	5.29532
NOS1AP	0	genome.wustl.edu	37	1	162270424	162270424	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	162270424	162270424	T	G	SNP	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	missense	c.272	p.L91R	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929				154	0	0	125	36	22.3602
SPEN	0	genome.wustl.edu	37	1	16237756	16237756	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16237756	16237756	C	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.1203	p.F401L	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				74	0	0	71	27	27.551
SPEN	0	genome.wustl.edu	37	1	16254624	16254624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16254624	16254624	G	A	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.1889	p.R630H	0.999	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				146	0	0	62	70	53.0303
UAP1	0	genome.wustl.edu	37	1	162551117	162551117	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	162551117	162551117	T	C	SNP	UAP1	ENST00000271469	human	ensembl	74_37	+1	known	silent	c.702	p.N234	0.342	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143				273	0	0	239	64	21.1221
SPEN	0	genome.wustl.edu	37	1	16255513	16255513	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16255513	16255513	A	C	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.2778	p.K926N	0.161	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				337	0	0	277	109	28.2383
UAP1	0	genome.wustl.edu	37	1	162560241	162560241	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	162560241	162560241	T	C	SNP	UAP1	ENST00000271469	human	ensembl	74_37	+1	known	missense	c.1298	p.V433A	1.000	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1	HGNC	ENSG00000117143				123	0	0	123	8	6.10687
SPEN	0	genome.wustl.edu	37	1	16260420	16260420	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16260420	16260420	T	C	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	missense	c.7685	p.V2562A	0.999	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				297	0	0	241	111	31.5341
SPEN	0	genome.wustl.edu	37	1	16265254	16265254	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16265254	16265254	C	T	SNP	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	silent	c.10746	p.G3582	1.000	pfam_SPOC_C,superfamily_SPOC_like_C_dom,pfscan_SPOC_met	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				77	0	0	48	15	23.8095
RGS4	0	genome.wustl.edu	37	1	163039216	163039216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	163039216	163039216	G	A	SNP	RGS4	ENST00000421743	human	ensembl	74_37	+1	known	missense	c.233	p.S78N	0.993	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS4	HGNC	ENSG00000117152				33	0	0	19	10	34.4828
CLCNKA	0	genome.wustl.edu	37	1	16359671	16359671	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16359671	16359671	A	C	SNP	CLCNKA	ENST00000331433	human	ensembl	74_37	+1	known	missense	c.1936	p.N646H	0.989	pfam_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510				249	0	0	160	53	24.8826
CLCNKA	0	genome.wustl.edu	37	1	16360278	16360278	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16360278	16360278	A	G	SNP	CLCNKA	ENST00000464764	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLCNKA	HGNC	ENSG00000186510				9	0	0	5	6	54.5455
PBX1	0	genome.wustl.edu	37	1	164815832	164815832	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	164815832	164815832	T	G	SNP	PBX1	ENST00000420696	human	ensembl	74_37	+1	known	silent	c.1212	p.G404	1.000	NULL	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX1	HGNC	ENSG00000185630				145	0	0	118	19	13.8686
LMX1A	0	genome.wustl.edu	37	1	165182951	165182951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	165182951	165182951	C	T	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	missense	c.596	p.R199K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761				262	0	0	117	109	48.2301
ARHGEF19	0	genome.wustl.edu	37	1	16528923	16528923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16528923	16528923	C	T	SNP	ARHGEF19	ENST00000270747	human	ensembl	74_37	-1	known	missense	c.2054	p.R685Q	1.000	superfamily_SH3_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF19	HGNC	ENSG00000142632				46	0	0	21	5	19.2308
RSG1	0	genome.wustl.edu	37	1	16559403	16559403	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16559403	16559403	G	A	SNP	RSG1	ENST00000375599	human	ensembl	74_37	-1	known	silent	c.375	p.F125	0.999	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase	pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,prints_Small_GTPase	-	no_errors	RSG1	HGNC	ENSG00000132881				157	0	0	85	27	24.1071
ALDH9A1	0	genome.wustl.edu	37	1	165638645	165638645	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	165638645	165638645	G	T	SNP	ALDH9A1	ENST00000354775	human	ensembl	74_37	-1	known	missense	c.973	p.L325I	0.962	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				74	0	0	76	15	16.4835
ALDH9A1	0	genome.wustl.edu	37	1	165664630	165664630	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	165664630	165664630	T	G	SNP	ALDH9A1	ENST00000354775	human	ensembl	74_37	-1	known	silent	c.186	p.R62	0.968	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				112	0	0	102	32	23.8806
FBXO42	0	genome.wustl.edu	37	1	16632304	16632304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16632304	16632304	A	G	SNP	FBXO42	ENST00000375592	human	ensembl	74_37	-1	known	missense	c.361	p.S121P	1.000	pfam_Kelch_2	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO42	HGNC	ENSG00000037637				124	0	0	59	26	30.5882
MAEL	0	genome.wustl.edu	37	1	166973498	166973498	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	166973498	166973498	T	G	SNP	MAEL	ENST00000367872	human	ensembl	74_37	+1	known	missense	c.605	p.F202C	0.977	superfamily_CH-domain	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_CH-domain	-	no_errors	MAEL	HGNC	ENSG00000143194				100	0	0	61	83	57.6389
MAEL	0	genome.wustl.edu	37	1	166974750	166974750	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	166974750	166974750	T	G	SNP	MAEL	ENST00000487826	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	MAEL	HGNC	ENSG00000143194				21	0	0	16	4	20
DUSP27	0	genome.wustl.edu	37	1	167097037	167097037	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	167097037	167097037	A	G	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	missense	c.2669	p.D890G	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842				95	0	0	52	24	31.5789
CD247	0	genome.wustl.edu	37	1	167408594	167408594	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	167408594	167408594	T	C	SNP	CD247	ENST00000362089	human	ensembl	74_37	-1	known	missense	c.206	p.N69S	0.133	pfam_Phos_immunorcpt_sig_ITAM,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821				121	0	0	55	45	45
DCAF6	0	genome.wustl.edu	37	1	167921046	167921046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	167921046	167921046	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.106	p.E36K	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				36	0	0	62	15	19.4805
DCAF6	0	genome.wustl.edu	37	1	168037606	168037606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	168037606	168037606	G	A	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.2696	p.R899Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				46	0	0	52	16	23.5294
SFT2D2	0	genome.wustl.edu	37	1	168208388	168208388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	168208388	168208388	C	T	SNP	SFT2D2	ENST00000271375	human	ensembl	74_37	+1	known	missense	c.433	p.P145S	1.000	pfam_Vesicle_transpt_Got1/SFT2	pfam_Vesicle_transpt_Got1/SFT2	-	no_errors	SFT2D2	HGNC	ENSG00000213064				118	0	0	93	80	46.2428
ATP1B1	0	genome.wustl.edu	37	1	169080737	169080737	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169080737	169080737	G	A	SNP	ATP1B1	ENST00000367815	human	ensembl	74_37	+1	known	splice_site	c.226+1	e2+1	1.000	-	-	-	no_errors	ATP1B1	HGNC	ENSG00000143153				116	0	0	72	19	20.8791
NME7	0	genome.wustl.edu	37	1	169101868	169101868	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169101868	169101868	A	G	SNP	NME7	ENST00000493481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	NME7	HGNC	ENSG00000143156				12	0	0	2	12	85.7143
NME7	0	genome.wustl.edu	37	1	169292429	169292429	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169292429	169292429	G	T	SNP	NME7	ENST00000367811	human	ensembl	74_37	-1	known	silent	c.204	p.V68	0.972	smart_Uncharacterised_DM10,pirsf_NDK7	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Uncharacterised_DM10,smart_Nucleoside_diP_kinase,pirsf_NDK7,prints_Nucleoside_diP_kinase	-	no_errors	NME7	HGNC	ENSG00000143156				143	0	0	158	41	20.603
CROCCP2	0	genome.wustl.edu	37	1	16946282	16946282	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	16946282	16946282	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				11	0	0	10	4	28.5714
F5	0	genome.wustl.edu	37	1	169509977	169509977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169509977	169509977	G	A	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.4351	p.L1451F	0.001	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				114	0	0	69	66	48.8889
F5	0	genome.wustl.edu	37	1	169521904	169521904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169521904	169521904	T	C	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.1187	p.Y396C	1.000	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734				129	1	0.769231	152	29	16.0221
C1orf112	0	genome.wustl.edu	37	1	169771777	169771777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169771777	169771777	G	A	SNP	C1orf112	ENST00000286031	human	ensembl	74_37	+1	known	missense	c.82	p.D28N	1.000	NULL	NULL	-	no_errors	C1orf112	HGNC	ENSG00000000460				61	0	0	53	19	26.3889
C1orf112	0	genome.wustl.edu	37	1	169822194	169822194	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169822194	169822194	T	G	SNP	C1orf112	ENST00000459772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.430	-	-	-	no_errors	C1orf112	HGNC	ENSG00000000460				34	0	0	21	24	53.3333
SCYL3	0	genome.wustl.edu	37	1	169823858	169823858	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169823858	169823858	C	T	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	silent	c.1722	p.E574	0.972	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				223	0	0	198	52	20.8
SCYL3	0	genome.wustl.edu	37	1	169828220	169828220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169828220	169828220	G	A	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	missense	c.1274	p.A425V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				135	0	0	115	31	21.2329
SCYL3	0	genome.wustl.edu	37	1	169836042	169836042	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	169836042	169836042	G	T	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	missense	c.810	p.F270L	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				32	0	0	38	15	28.3019
GORAB	0	genome.wustl.edu	37	1	170511686	170511686	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	170511686	170511686	G	T	SNP	GORAB	ENST00000367763	human	ensembl	74_37	+1	known	missense	c.549	p.E183D	1.000	pfam_Transcript_act	pfam_Transcript_act	-	no_errors	GORAB	HGNC	ENSG00000120370				151	0	0	130	47	26.5537
MROH9	0	genome.wustl.edu	37	1	170952658	170952658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	170952658	170952658	G	A	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	missense	c.712	p.E238K	0.005	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				42	0	0	54	8	12.9032
MROH9	0	genome.wustl.edu	37	1	170967331	170967331	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	170967331	170967331	G	T	SNP	MROH9	ENST00000367759	human	ensembl	74_37	+1	known	missense	c.1512	p.E504D	0.982	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				110	0	0	106	36	25.3521
MROH9	0	genome.wustl.edu	37	1	170967484	170967484	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	170967484	170967484	C	T	SNP	MROH9	ENST00000367758	human	ensembl	74_37	+1	known	silent	c.1665	p.F555	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	MROH9	HGNC	ENSG00000117501				94	0	0	58	59	50.4274
FMO2	0	genome.wustl.edu	37	1	171173122	171173122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	171173122	171173122	G	A	SNP	FMO2	ENST00000209929	human	ensembl	74_37	+1	known	missense	c.746	p.R249Q	0.239	pfam_Flavin_mOase-like,prints_Flavin_mOase_2,prints_Flavin_mOase_1	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963				88	0	0	65	20	23.5294
FMO2	0	genome.wustl.edu	37	1	171176833	171176833	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	171176833	171176833	T	G	SNP	FMO2	ENST00000488431	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FMO2	HGNC	ENSG00000094963				77	0	0	88	35	28.4553
FMO2	0	genome.wustl.edu	37	1	171176837	171176837	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	171176837	171176837	A	G	SNP	FMO2	ENST00000488431	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	FMO2	HGNC	ENSG00000094963				76	0	0	71	55	43.6508
FMO4	0	genome.wustl.edu	37	1	171300852	171300852	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	171300852	171300852	C	T	SNP	FMO4	ENST00000367749	human	ensembl	74_37	+1	known	silent	c.558	p.R186	0.023	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_4,prints_Flavin_mOase_1,prints_Flavin_mOase_3	-	no_errors	FMO4	HGNC	ENSG00000076258				223	0	0	197	47	19.2623
PRRC2C	0	genome.wustl.edu	37	1	171492526	171492526	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	171492526	171492526	T	G	SNP	PRRC2C	ENST00000470689	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	PRRC2C	HGNC	ENSG00000117523				46	0	0	45	17	27.4194
PIGC	0	genome.wustl.edu	37	1	172411136	172411136	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	172411136	172411136	A	C	SNP	PIGC	ENST00000258324	human	ensembl	74_37	-1	known	missense	c.627	p.I209M	0.996	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	pfam_Plno_GlcNAc_GPI2,pirsf_Plno_GlcNAc_GPI2	-	no_errors	PIGC	HGNC	ENSG00000135845				136	0	0	115	28	19.5804
SUCO	0	genome.wustl.edu	37	1	172539808	172539808	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	172539808	172539808	A	G	SNP	SUCO	ENST00000608151	human	ensembl	74_37	+1	known	silent	c.1464	p.T488	1.000	pfam_Sad1_UNC_C	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				41	0	0	51	10	16.3934
FASLG	0	genome.wustl.edu	37	1	172634779	172634779	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	172634779	172634779	T	C	SNP	FASLG	ENST00000367721	human	ensembl	74_37	+1	known	missense	c.469	p.S157P	0.582	superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_FASL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_FASL,prints_TNF,prints_TNF_C	-	no_errors	FASLG	HGNC	ENSG00000117560				99	0	0	84	22	20.7547
CROCC	0	genome.wustl.edu	37	1	17265432	17265432	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	17265432	17265432	T	C	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.1403	p.V468A	0.887	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				78	0	0	26	12	31.5789
TNFSF4	0	genome.wustl.edu	37	1	173174606	173174606	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173174606	173174606	G	A	SNP	TNFSF4	ENST00000488053	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TNFSF4	HGNC	ENSG00000117586				28	0	0	40	11	21.5686
TNFSF4	0	genome.wustl.edu	37	1	173176216	173176216	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173176216	173176216	G	A	SNP	TNFSF4	ENST00000281834	human	ensembl	74_37	-1	known	silent	c.100	p.L34	0.017	NULL	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom	-	no_errors	TNFSF4	HGNC	ENSG00000117586				81	0	0	61	20	24.6914
SLC9C2	0	genome.wustl.edu	37	1	173542456	173542456	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173542456	173542456	C	A	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.911	p.R304I	0.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				27	0	0	45	14	23.7288
ANKRD45	0	genome.wustl.edu	37	1	173616051	173616051	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173616051	173616051	C	A	SNP	ANKRD45	ENST00000333279	human	ensembl	74_37	-1	known	nonsense	c.430	p.E144*	0.914	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD45	HGNC	ENSG00000183831				154	0	0	129	28	17.8344
KLHL20	0	genome.wustl.edu	37	1	173754461	173754461	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173754461	173754461	G	A	SNP	KLHL20	ENST00000488983	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.963	-	-	-	no_errors	KLHL20	HGNC	ENSG00000076321				14	0	0	20	6	23.0769
DARS2	0	genome.wustl.edu	37	1	173795873	173795873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173795873	173795873	C	T	SNP	DARS2	ENST00000361951	human	ensembl	74_37	+1	known	missense	c.176	p.S59L	0.994	superfamily_NA-bd_OB-fold,tigrfam_Asp-tRNA-ligase_IIb_bac/mt	pfam_aa-tRNA-synt_II,pfam_GAD_dom,pfam_NA-bd_OB_tRNA,superfamily_GAD_dom,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,prints_Lys-tRNA-synth_II_C,tigrfam_Asp-tRNA-ligase_IIb_bac/mt	-	no_errors	DARS2	HGNC	ENSG00000117593				106	0	0	82	21	20.3883
GAS5	0	genome.wustl.edu	37	1	173833533	173833533	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173833533	173833533	T	G	SNP	GAS5	ENST00000365524	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.626	-	-	-	no_errors	GAS5	HGNC	ENSG00000234741				44	0	0	54	23	29.8701
RC3H1	0	genome.wustl.edu	37	1	173934066	173934066	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	173934066	173934066	C	T	SNP	RC3H1	ENST00000258349	human	ensembl	74_37	-1	known	silent	c.1527	p.P509	0.806	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H1	HGNC	ENSG00000135870				148	0	0	123	52	29.7143
TNR	0	genome.wustl.edu	37	1	175325525	175325525	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	175325525	175325525	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.3048	p.H1016	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				162	0	0	123	32	20.6452
TNR	0	genome.wustl.edu	37	1	175372721	175372721	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	175372721	175372721	G	A	SNP	TNR	ENST00000263525	human	ensembl	74_37	-1	known	silent	c.531	p.G177	1.000	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_Fibronectin_type3	-	no_errors	TNR	HGNC	ENSG00000116147				177	1	0.561798	140	33	19.0751
ASTN1	0	genome.wustl.edu	37	1	176857271	176857271	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	176857271	176857271	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	nonsense	c.3034	p.R1012*	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				95	0	0	43	52	54.7368
PADI4	0	genome.wustl.edu	37	1	17690157	17690157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	17690157	17690157	C	A	SNP	PADI4	ENST00000375448	human	ensembl	74_37	+1	known	missense	c.1899	p.F633L	0.125	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339				75	0	0	21	20	48.7805
ASTN1	0	genome.wustl.edu	37	1	176903370	176903370	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	176903370	176903370	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	silent	c.2613	p.G871	1.000	smart_MACPF	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				76	0	0	52	42	44.6809
ASTN1	0	genome.wustl.edu	37	1	176983952	176983952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	176983952	176983952	G	A	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.1522	p.R508W	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				544	0	0	254	317	55.5166
PADI6	0	genome.wustl.edu	37	1	17707627	17707627	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	17707627	17707627	A	G	SNP	PADI6	ENST00000358481	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049				16	0	0	5	3	37.5
PADI6	0	genome.wustl.edu	37	1	17721561	17721561	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	17721561	17721561	C	A	SNP	PADI6	ENST00000358481	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PADI6	HGNC	ENSG00000256049				142	0	0	67	28	29.4737
BRINP2	0	genome.wustl.edu	37	1	177245497	177245497	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	177245497	177245497	C	T	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	silent	c.939	p.I313	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797				92	0	0	28	33	54.0984
RCC2	0	genome.wustl.edu	37	1	17735647	17735647	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	17735647	17735647	T	G	SNP	RCC2	ENST00000375433	human	ensembl	74_37	-1	known	missense	c.1508	p.E503A	0.996	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	RCC2	HGNC	ENSG00000179051				153	0	0	73	38	34.2342
RASAL2	0	genome.wustl.edu	37	1	178423770	178423770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	178423770	178423770	C	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.2198	p.S733F	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391				79	0	0	92	22	19.2982
AXDND1	0	genome.wustl.edu	37	1	179399642	179399642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	179399642	179399642	T	C	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	missense	c.1388	p.V463A	0.273	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				95	0	0	52	49	48.5149
AXDND1	0	genome.wustl.edu	37	1	179504086	179504086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	179504086	179504086	C	T	SNP	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	missense	c.3020	p.S1007F	0.000	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				45	0	0	33	34	50.7463
NPHS2	0	genome.wustl.edu	37	1	179528894	179528894	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	179528894	179528894	G	T	SNP	NPHS2	ENST00000367615	human	ensembl	74_37	-1	known	missense	c.454	p.L152I	1.000	pfam_Band_7,smart_Band_7,prints_Stomatin	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	NPHS2	HGNC	ENSG00000116218				8	0	0	8	7	46.6667
TDRD5	0	genome.wustl.edu	37	1	179564917	179564917	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	179564917	179564917	G	A	SNP	TDRD5	ENST00000444136	human	ensembl	74_37	+1	known	silent	c.795	p.E265	0.768	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD5	HGNC	ENSG00000162782				109	0	0	52	51	49.5146
KIAA1614	0	genome.wustl.edu	37	1	180904388	180904388	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	180904388	180904388	C	T	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	missense	c.1343	p.S448L	0.966	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				25	0	0	10	11	52.381
STX6	0	genome.wustl.edu	37	1	180962512	180962512	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	180962512	180962512	C	A	SNP	STX6	ENST00000258301	human	ensembl	74_37	-1	known	missense	c.350	p.R117I	0.995	NULL	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823				73	0	0	96	31	24.4094
ACTL8	0	genome.wustl.edu	37	1	18149556	18149556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	18149556	18149556	G	A	SNP	ACTL8	ENST00000375406	human	ensembl	74_37	+1	known	missense	c.53	p.G18D	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL8	HGNC	ENSG00000117148				88	0	0	34	26	43.3333
ACTL8	0	genome.wustl.edu	37	1	18152471	18152471	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	18152471	18152471	G	T	SNP	ACTL8	ENST00000375406	human	ensembl	74_37	+1	known	missense	c.558	p.K186N	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL8	HGNC	ENSG00000117148				67	0	0	31	8	20.5128
CACNA1E	0	genome.wustl.edu	37	1	181684518	181684518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	181684518	181684518	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.1216	p.A406T	0.999	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				21	0	0	11	3	21.4286
CACNA1E	0	genome.wustl.edu	37	1	181740471	181740471	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	181740471	181740471	C	T	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.4924	p.R1642W	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				13	0	0	17	2	10.5263
GLUL	0	genome.wustl.edu	37	1	182358056	182358056	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	182358056	182358056	A	C	SNP	GLUL	ENST00000475808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLUL	HGNC	ENSG00000135821				8	0	0	6	5	45.4545
RNASEL	0	genome.wustl.edu	37	1	182555419	182555419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	182555419	182555419	C	T	SNP	RNASEL	ENST00000367559	human	ensembl	74_37	-1	known	missense	c.523	p.A175T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	RNASEL	HGNC	ENSG00000135828				102	0	0	86	19	18.0952
NPL	0	genome.wustl.edu	37	1	182795051	182795051	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	182795051	182795051	T	G	SNP	NPL	ENST00000463899	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NPL	HGNC	ENSG00000135838				74	0	0	61	20	24.6914
NPL	0	genome.wustl.edu	37	1	182798041	182798041	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	182798041	182798041	T	G	SNP	NPL	ENST00000258317	human	ensembl	74_37	+1	known	nonstop	c.961	p.*321E	0.818	NULL	pfam_DapA-like,prints_DapA-like	-	no_errors	NPL	HGNC	ENSG00000135838				140	0	0	112	48	30
SHCBP1L	0	genome.wustl.edu	37	1	182908317	182908317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	182908317	182908317	C	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.1070	p.R357H	1.000	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				73	0	0	41	31	43.0556
LAMC1	0	genome.wustl.edu	37	1	183085943	183085943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183085943	183085943	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.1469	p.R490Q	0.035	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				123	0	0	71	76	51.7007
LAMC1	0	genome.wustl.edu	37	1	183091010	183091010	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183091010	183091010	C	T	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.2143	p.L715F	0.995	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				63	0	0	35	41	53.9474
LAMC1	0	genome.wustl.edu	37	1	183111855	183111855	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183111855	183111855	G	A	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.4760	p.R1587H	0.937	NULL	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				100	0	0	45	53	54.0816
NMNAT2	0	genome.wustl.edu	37	1	183259293	183259293	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183259293	183259293	G	A	SNP	NMNAT2	ENST00000287713	human	ensembl	74_37	-1	known	silent	c.291	p.S97	0.979	pfam_Cyt_trans-like	pfam_Cyt_trans-like	-	no_errors	NMNAT2	HGNC	ENSG00000157064				14	0	0	5	4	44.4444
NCF2	0	genome.wustl.edu	37	1	183538297	183538297	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183538297	183538297	C	T	SNP	NCF2	ENST00000367535	human	ensembl	74_37	-1	known	silent	c.693	p.P231	0.998	superfamily_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_TPR_1,pfam_OPR_PB1,superfamily_SH3_domain,smart_TPR_repeat,smart_SH3_domain,smart_OPR_PB1,pfscan_SH3_domain,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_p67phox,prints_SH3_domain	-	no_errors	NCF2	HGNC	ENSG00000116701				196	0	0	148	40	21.2766
RGL1	0	genome.wustl.edu	37	1	183816872	183816872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183816872	183816872	C	T	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.416	p.A139V	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				124	0	0	123	45	26.7857
RGL1	0	genome.wustl.edu	37	1	183861216	183861216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183861216	183861216	G	A	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.1166	p.R389Q	0.998	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				54	0	0	35	18	33.9623
RGL1	0	genome.wustl.edu	37	1	183873985	183873985	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183873985	183873985	A	C	SNP	RGL1	ENST00000304685	human	ensembl	74_37	+1	known	missense	c.1457	p.E486A	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL1	HGNC	ENSG00000143344				83	0	0	89	31	25.8333
COLGALT2	0	genome.wustl.edu	37	1	183909901	183909901	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183909901	183909901	A	G	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	missense	c.1418	p.M473T	1.000	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				129	0	0	72	69	48.9362
COLGALT2	0	genome.wustl.edu	37	1	183913357	183913357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	183913357	183913357	T	C	SNP	COLGALT2	ENST00000361927	human	ensembl	74_37	-1	known	missense	c.1370	p.D457G	0.952	pfam_Glyco_trans_25	pfam_Glyco_trans_25	-	no_errors	COLGALT2	HGNC	ENSG00000198756				136	0	0	116	31	21.0884
EDEM3	0	genome.wustl.edu	37	1	184677372	184677372	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	184677372	184677372	T	G	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.1952	p.Q651P	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				71	0	0	54	6	10
EDEM3	0	genome.wustl.edu	37	1	184688582	184688582	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	184688582	184688582	A	G	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	silent	c.1072	p.L358	0.345	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406				69	0	0	74	15	16.8539
FAM129A	0	genome.wustl.edu	37	1	184764100	184764100	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	184764100	184764100	A	C	SNP	FAM129A	ENST00000487074	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM129A	HGNC	ENSG00000135842				137	0	0	119	27	18.4932
RNF2	0	genome.wustl.edu	37	1	185056762	185056762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185056762	185056762	G	A	SNP	RNF2	ENST00000367510	human	ensembl	74_37	+1	known	missense	c.77	p.R26Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF2	HGNC	ENSG00000121481				145	0	0	113	25	18.1159
TRMT1L	0	genome.wustl.edu	37	1	185121027	185121027	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185121027	185121027	C	A	SNP	TRMT1L	ENST00000367506	human	ensembl	74_37	-1	known	missense	c.276	p.E92D	1.000	NULL	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486				40	0	0	31	40	56.338
SWT1	0	genome.wustl.edu	37	1	185143597	185143597	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185143597	185143597	T	C	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	silent	c.318	p.N106	0.001	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				24	0	0	26	25	49.0196
SWT1	0	genome.wustl.edu	37	1	185175889	185175889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185175889	185175889	C	T	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.1966	p.R656C	0.005	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				29	0	0	24	30	55.5556
SWT1	0	genome.wustl.edu	37	1	185183737	185183737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185183737	185183737	C	A	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.2071	p.L691I	1.000	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				113	0	0	100	25	20
SWT1	0	genome.wustl.edu	37	1	185191052	185191052	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185191052	185191052	G	T	SNP	SWT1	ENST00000367500	human	ensembl	74_37	+1	known	missense	c.2193	p.K731N	0.015	NULL	smart_PIN_dom	-	no_errors	SWT1	HGNC	ENSG00000116668				181	0	0	117	125	51.6529
IVNS1ABP	0	genome.wustl.edu	37	1	185267253	185267253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185267253	185267253	C	T	SNP	IVNS1ABP	ENST00000367498	human	ensembl	74_37	-1	known	missense	c.1843	p.D615N	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	IVNS1ABP	HGNC	ENSG00000116679				275	0	0	173	152	46.7692
HMCN1	0	genome.wustl.edu	37	1	185892598	185892598	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185892598	185892598	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.1098	p.S366	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				71	0	0	39	45	53.5714
HMCN1	0	genome.wustl.edu	37	1	185892648	185892648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185892648	185892648	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.1148	p.R383Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				104	0	0	95	21	18.1034
HMCN1	0	genome.wustl.edu	37	1	185950199	185950199	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185950199	185950199	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	nonsense	c.2656	p.G886*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				108	0	0	97	35	26.5152
HMCN1	0	genome.wustl.edu	37	1	185953431	185953431	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	185953431	185953431	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.2921	p.S974Y	0.983	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				133	0	0	142	42	22.8261
HMCN1	0	genome.wustl.edu	37	1	186063435	186063435	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186063435	186063435	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.10224	p.V3408	0.062	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				84	0	0	93	19	16.9643
HMCN1	0	genome.wustl.edu	37	1	186084048	186084048	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186084048	186084048	G	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.11374	p.D3792Y	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				193	0	0	118	130	52.4194
HMCN1	0	genome.wustl.edu	37	1	186092119	186092119	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186092119	186092119	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.12266	p.V4089A	0.003	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				118	0	0	54	73	57.4803
HMCN1	0	genome.wustl.edu	37	1	186151325	186151325	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186151325	186151325	T	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.16320	p.D5440	0.002	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				161	0	0	152	51	25.1232
HMCN1	0	genome.wustl.edu	37	1	186157020	186157020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186157020	186157020	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16420	p.D5474N	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				166	0	0	122	25	17.0068
HMCN1	0	genome.wustl.edu	37	1	186158953	186158953	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186158953	186158953	C	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	silent	c.16851	p.T5617	1.000	superfamily_Cadherin-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				102	0	0	98	20	16.9492
PRG4	0	genome.wustl.edu	37	1	186274033	186274033	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186274033	186274033	G	T	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	nonsense	c.577	p.E193*	1.000	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				72	0	0	54	41	43.1579
PRG4	0	genome.wustl.edu	37	1	186277929	186277929	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186277929	186277929	A	C	SNP	PRG4	ENST00000445192	human	ensembl	74_37	+1	known	missense	c.3078	p.K1026N	0.989	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690				123	0	0	79	90	53.2544
TPR	0	genome.wustl.edu	37	1	186321231	186321231	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186321231	186321231	T	G	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.2346	p.E782D	1.000	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410				56	0	0	39	49	55.6818
PTGS2	0	genome.wustl.edu	37	1	186643844	186643844	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	186643844	186643844	C	A	SNP	PTGS2	ENST00000367468	human	ensembl	74_37	-1	known	missense	c.1456	p.A486S	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS2	HGNC	ENSG00000073756				125	0	0	60	73	54.8872
KLHDC7A	0	genome.wustl.edu	37	1	18809805	18809805	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	18809805	18809805	T	G	SNP	KLHDC7A	ENST00000400664	human	ensembl	74_37	+1	known	missense	c.2330	p.V777G	1.000	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7A	HGNC	ENSG00000179023				175	0	0	60	36	37.5
BRINP3	0	genome.wustl.edu	37	1	190067455	190067455	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	190067455	190067455	T	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.1994	p.N665S	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				167	0	0	98	92	48.4211
PAX7	0	genome.wustl.edu	37	1	19027166	19027166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	19027166	19027166	G	A	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	missense	c.806	p.R269H	0.642	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				132	0	0	63	34	35.0515
BRINP3	0	genome.wustl.edu	37	1	190423785	190423785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	190423785	190423785	C	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.236	p.R79K	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				42	0	0	25	15	37.5
TAS1R2	0	genome.wustl.edu	37	1	19166471	19166471	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	19166471	19166471	C	A	SNP	TAS1R2	ENST00000375371	human	ensembl	74_37	-1	novel	missense	c.2142	p.K714N	0.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R2	HGNC	ENSG00000179002				120	0	0	49	30	37.9747
IFFO2	0	genome.wustl.edu	37	1	19236921	19236921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	19236921	19236921	C	T	SNP	IFFO2	ENST00000455833	human	ensembl	74_37	-1	known	missense	c.1363	p.E455K	1.000	pfam_IF	pfam_IF	-	no_errors	IFFO2	HGNC	ENSG00000169991				47	0	0	16	9	36
TROVE2	0	genome.wustl.edu	37	1	193051378	193051378	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	193051378	193051378	T	C	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	silent	c.1266	p.C422	1.000	NULL	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				154	0	0	78	100	56.1798
CDC73	0	genome.wustl.edu	37	1	193099338	193099338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	193099338	193099338	G	A	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.272	p.R91Q	1.000	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				48	0	0	50	14	21.875
CDC73	0	genome.wustl.edu	37	1	193111184	193111184	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	193111184	193111184	A	C	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	missense	c.717	p.Q239H	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				53	0	0	42	43	50.5882
B3GALT2	0	genome.wustl.edu	37	1	193150455	193150455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	193150455	193150455	G	A	SNP	B3GALT2	ENST00000367434	human	ensembl	74_37	-1	known	missense	c.238	p.R80W	0.986	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT2	HGNC	ENSG00000162630				156	0	0	83	88	51.462
KCNT2	0	genome.wustl.edu	37	1	196303054	196303054	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196303054	196303054	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.1920	p.S640	0.002	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				61	0	0	27	23	46
KCNT2	0	genome.wustl.edu	37	1	196438181	196438181	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196438181	196438181	C	T	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.402	p.Q134	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				16	0	0	24	10	29.4118
CFH	0	genome.wustl.edu	37	1	196648758	196648758	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196648758	196648758	T	G	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.625	p.S209A	0.242	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				36	0	0	27	29	51.7857
CFH	0	genome.wustl.edu	37	1	196716243	196716243	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196716243	196716243	C	A	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.3496	p.P1166T	0.000	superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				80	0	0	78	23	22.7723
CFH	0	genome.wustl.edu	37	1	196716413	196716413	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196716413	196716413	A	G	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	silent	c.3666	p.K1222	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				93	0	0	88	20	18.5185
CFHR4	0	genome.wustl.edu	37	1	196874351	196874351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196874351	196874351	G	A	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.367	p.A123T	0.006	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				136	0	0	150	34	18.4783
CFHR4	0	genome.wustl.edu	37	1	196876020	196876020	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196876020	196876020	T	C	SNP	CFHR4	ENST00000367416	human	ensembl	74_37	+1	known	missense	c.466	p.S156P	0.041	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365				76	0	0	64	15	18.9873
CFHR5	0	genome.wustl.edu	37	1	196952070	196952070	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196952070	196952070	T	G	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.186	p.D62E	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				82	0	0	107	24	18.3206
CFHR5	0	genome.wustl.edu	37	1	196964986	196964986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196964986	196964986	A	G	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.819	p.I273M	0.004	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				64	0	0	69	13	15.8537
CFHR5	0	genome.wustl.edu	37	1	196977700	196977700	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	196977700	196977700	A	G	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.1669	p.T557A	0.097	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				70	0	0	59	15	20.2703
F13B	0	genome.wustl.edu	37	1	197021915	197021915	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197021915	197021915	C	A	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.1404	p.M468I	1.000	superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				84	0	0	102	23	18.4
ASPM	0	genome.wustl.edu	37	1	197057536	197057536	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197057536	197057536	A	G	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	silent	c.10011	p.Y3337	0.015	superfamily_ARM-type_fold	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				93	0	0	84	70	45.4545
ASPM	0	genome.wustl.edu	37	1	197069802	197069802	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197069802	197069802	T	G	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.8579	p.K2860T	0.000	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				71	0	0	73	22	23.1579
ASPM	0	genome.wustl.edu	37	1	197112287	197112287	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197112287	197112287	A	C	SNP	ASPM	ENST00000367409	human	ensembl	74_37	-1	known	missense	c.1095	p.I365M	0.998	NULL	pfam_IQ_motif_EF-hand-BS,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_CH-domain,smart_IQ_motif_EF-hand-BS,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS	-	no_errors	ASPM	HGNC	ENSG00000066279				37	0	0	34	33	49.2537
ZBTB41	0	genome.wustl.edu	37	1	197145707	197145707	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197145707	197145707	T	A	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.1866	p.K622N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				79	0	0	56	57	50.4425
ZBTB41	0	genome.wustl.edu	37	1	197169588	197169588	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197169588	197169588	T	G	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.16	p.K6Q	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888				76	0	0	88	32	26.6667
CRB1	0	genome.wustl.edu	37	1	197316596	197316596	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197316596	197316596	T	C	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.975	p.C325	1.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				105	0	0	85	22	20.5607
CRB1	0	genome.wustl.edu	37	1	197404523	197404523	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197404523	197404523	A	G	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.3530	p.N1177S	0.135	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376				78	0	0	65	22	25.2874
LHX9	0	genome.wustl.edu	37	1	197896799	197896799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	197896799	197896799	G	A	SNP	LHX9	ENST00000367387	human	ensembl	74_37	+1	known	missense	c.812	p.R271Q	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX9	HGNC	ENSG00000143355				289	0	0	312	90	22.3881
PTPRC	0	genome.wustl.edu	37	1	198687388	198687388	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	198687388	198687388	T	C	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.1616	p.F539S	0.053	pirsf_Leukocyte_common_ag,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				43	0	0	58	17	22.6667
KIF14	0	genome.wustl.edu	37	1	200524575	200524575	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200524575	200524575	T	C	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.4361	p.K1454R	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				45	0	0	52	16	23.5294
KIF14	0	genome.wustl.edu	37	1	200573037	200573037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200573037	200573037	C	T	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.1793	p.R598Q	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				54	0	0	67	19	22.093
KIF14	0	genome.wustl.edu	37	1	200587451	200587451	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200587451	200587451	T	C	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.401	p.K134R	0.045	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				132	0	0	135	12	8.16327
DDX59	0	genome.wustl.edu	37	1	200613475	200613475	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200613475	200613475	T	G	SNP	DDX59	ENST00000331314	human	ensembl	74_37	-1	known	missense	c.1767	p.Q589H	1.000	superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				146	0	0	145	41	22.043
DDX59	0	genome.wustl.edu	37	1	200619637	200619637	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200619637	200619637	C	A	SNP	DDX59	ENST00000331314	human	ensembl	74_37	-1	known	missense	c.1230	p.K410N	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197				102	0	0	73	60	45.1128
KIF21B	0	genome.wustl.edu	37	1	200944028	200944028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	200944028	200944028	G	A	SNP	KIF21B	ENST00000422435	human	ensembl	74_37	-1	known	missense	c.4628	p.A1543V	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852				129	0	0	58	48	45.283
CACNA1S	0	genome.wustl.edu	37	1	201018159	201018159	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	201018159	201018159	T	G	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.4310	p.K1437T	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				43	0	0	24	10	29.4118
IGFN1	0	genome.wustl.edu	37	1	201195200	201195200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	201195200	201195200	G	A	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.10735	p.A3579T	0.125	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395				65	0	0	29	18	38.2979
TNNT2	0	genome.wustl.edu	37	1	201332436	201332436	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	201332436	201332436	A	G	SNP	TNNT2	ENST00000458432	human	ensembl	74_37	-1	known	silent	c.594	p.G198	0.085	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT2	HGNC	ENSG00000118194				296	0	0	203	51	20.0787
LMOD1	0	genome.wustl.edu	37	1	201869382	201869382	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	201869382	201869382	C	A	SNP	LMOD1	ENST00000367288	human	ensembl	74_37	-1	known	missense	c.759	p.E253D	0.088	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431				34	0	0	32	6	15.7895
UBE2T	0	genome.wustl.edu	37	1	202301044	202301044	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	202301044	202301044	G	A	SNP	UBE2T	ENST00000367274	human	ensembl	74_37	-1	known	silent	c.513	p.D171	0.000	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2T	HGNC	ENSG00000077152				211	0	0	176	62	26.0504
PPP1R12B	0	genome.wustl.edu	37	1	202418139	202418139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	202418139	202418139	G	A	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.1690	p.D564N	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				69	0	0	85	25	22.7273
KDM5B	0	genome.wustl.edu	37	1	202715102	202715102	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	202715102	202715102	T	C	SNP	KDM5B	ENST00000367264	human	ensembl	74_37	-1	known	missense	c.2315	p.Y772C	1.000	pfam_Znf_C5HC2	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5B	HGNC	ENSG00000117139				191	0	0	207	48	18.8235
LOC148709	0	genome.wustl.edu	37	1	202842502	202842502	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	202842502	202842502	G	A	SNP	LOC148709	ENST00000456105	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-480I12.7	Clone_based_vega_gene	ENSG00000234996				14	0	0	8	3	27.2727
TMEM183A	0	genome.wustl.edu	37	1	202977772	202977772	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	202977772	202977772	A	G	SNP	TMEM183A	ENST00000367242	human	ensembl	74_37	+1	known	silent	c.201	p.V67	1.000	NULL	superfamily_F-box_dom	-	no_errors	TMEM183A	HGNC	ENSG00000163444				70	0	0	37	51	57.9545
CHI3L1	0	genome.wustl.edu	37	1	203150382	203150382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	203150382	203150382	C	T	SNP	CHI3L1	ENST00000255409	human	ensembl	74_37	-1	known	missense	c.619	p.D207N	0.996	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CHI3L1	HGNC	ENSG00000133048				115	0	0	55	50	47.619
ZC3H11A	0	genome.wustl.edu	37	1	203802956	203802956	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	203802956	203802956	A	G	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	silent	c.849	p.R283	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				129	1	0.769231	159	39	19.697
ZC3H11A	0	genome.wustl.edu	37	1	203807179	203807179	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	203807179	203807179	A	C	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	missense	c.960	p.K320N	0.999	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				54	0	0	56	22	28.2051
ZC3H11A	0	genome.wustl.edu	37	1	203820233	203820233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	203820233	203820233	G	A	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	missense	c.2155	p.A719T	0.998	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				207	0	0	109	126	53.617
MDM4	0	genome.wustl.edu	37	1	204512067	204512067	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	204512067	204512067	A	G	SNP	MDM4	ENST00000367182	human	ensembl	74_37	+1	known	missense	c.667	p.N223D	1.000	pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM4	HGNC	ENSG00000198625				90	0	0	89	82	47.9532
MDM4	0	genome.wustl.edu	37	1	204518820	204518820	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	204518820	204518820	G	A	SNP	MDM4	ENST00000463049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	MDM4	HGNC	ENSG00000198625				63	0	0	41	15	26.7857
NFASC	0	genome.wustl.edu	37	1	204953188	204953188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	204953188	204953188	G	A	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.2504	p.R835Q	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				64	0	0	61	15	19.7368
TMEM81	0	genome.wustl.edu	37	1	205053000	205053000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	205053000	205053000	G	A	SNP	TMEM81	ENST00000367167	human	ensembl	74_37	-1	known	missense	c.449	p.A150V	0.000	pfscan_Ig-like_dom	pfscan_Ig-like_dom	-	no_errors	TMEM81	HGNC	ENSG00000174529				151	0	0	104	30	22.3881
TMEM81	0	genome.wustl.edu	37	1	205053297	205053297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	205053297	205053297	A	G	SNP	TMEM81	ENST00000367167	human	ensembl	74_37	-1	known	missense	c.152	p.V51A	0.998	NULL	pfscan_Ig-like_dom	-	no_errors	TMEM81	HGNC	ENSG00000174529				117	0	0	93	27	22.5
PM20D1	0	genome.wustl.edu	37	1	205797811	205797811	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	205797811	205797811	G	T	SNP	PM20D1	ENST00000367136	human	ensembl	74_37	-1	known	silent	c.1446	p.I482	0.986	pfam_Peptidase_M20	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,superfamily_Peptidase_M20_dimer	-	no_errors	PM20D1	HGNC	ENSG00000162877				67	0	0	34	42	55.2632
SLC26A9	0	genome.wustl.edu	37	1	205884154	205884154	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	205884154	205884154	C	A	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	missense	c.2530	p.D844Y	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				140	0	0	86	43	33.3333
IKBKE	0	genome.wustl.edu	37	1	206665007	206665007	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	206665007	206665007	G	T	SNP	IKBKE	ENST00000367120	human	ensembl	74_37	+1	known	missense	c.1760	p.R587I	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466				104	0	0	73	16	17.9775
RASSF5	0	genome.wustl.edu	37	1	206760356	206760356	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	206760356	206760356	T	G	SNP	RASSF5	ENST00000481486	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RASSF5	HGNC	ENSG00000136653				35	0	0	27	27	50
DYRK3	0	genome.wustl.edu	37	1	206821076	206821076	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	206821076	206821076	G	T	SNP	DYRK3	ENST00000367109	human	ensembl	74_37	+1	known	missense	c.533	p.R178I	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK3	HGNC	ENSG00000143479				251	0	0	198	50	20.1613
MAPKAPK2	0	genome.wustl.edu	37	1	206903322	206903322	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	206903322	206903322	G	T	SNP	MAPKAPK2	ENST00000367103	human	ensembl	74_37	+1	known	missense	c.570	p.E190D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				125	0	0	78	17	17.8947
MAPKAPK2	0	genome.wustl.edu	37	1	206904755	206904755	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	206904755	206904755	C	T	SNP	MAPKAPK2	ENST00000479009	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				10	0	0	3	5	62.5
C4BPB	0	genome.wustl.edu	37	1	207273175	207273175	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207273175	207273175	G	T	SNP	C4BPB	ENST00000243611	human	ensembl	74_37	+1	known	missense	c.660	p.E220D	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPB	HGNC	ENSG00000123843				130	0	0	58	76	56.7164
CD55	0	genome.wustl.edu	37	1	207495903	207495903	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207495903	207495903	T	C	SNP	CD55	ENST00000314754	human	ensembl	74_37	+1	known	missense	c.277	p.F93L	0.871	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CD55	HGNC	ENSG00000196352				88	0	0	62	17	21.519
CR2	0	genome.wustl.edu	37	1	207642169	207642169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207642169	207642169	G	A	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	missense	c.659	p.R220Q	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				91	0	0	103	30	22.5564
CR2	0	genome.wustl.edu	37	1	207648237	207648237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207648237	207648237	C	A	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	missense	c.2392	p.L798I	0.323	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				164	0	0	167	49	22.6852
CR2	0	genome.wustl.edu	37	1	207648254	207648254	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207648254	207648254	C	A	SNP	CR2	ENST00000367057	human	ensembl	74_37	+1	known	silent	c.2409	p.V803	0.883	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC	ENSG00000117322				150	0	0	169	56	24.8889
CR1L	0	genome.wustl.edu	37	1	207851610	207851610	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207851610	207851610	C	T	SNP	CR1L	ENST00000508064	human	ensembl	74_37	+1	known	silent	c.345	p.F115	0.597	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721				77	0	0	51	39	43.3333
CR1L	0	genome.wustl.edu	37	1	207890813	207890813	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207890813	207890813	C	A	SNP	CR1L	ENST00000508064	human	ensembl	74_37	+1	known	silent	c.1419	p.I473	0.547	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1L	HGNC	ENSG00000197721				113	0	0	71	75	51.3699
C1orf132	0	genome.wustl.edu	37	1	207975264	207975264	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	207975264	207975264	C	T	SNP	C1orf132	ENST00000385231	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C1orf132	HGNC	ENSG00000203709				14	0	0	6	5	45.4545
PLXNA2	0	genome.wustl.edu	37	1	208202319	208202319	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	208202319	208202319	C	A	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.5294	p.S1765I	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				115	0	0	88	35	28.4553
PLXNA2	0	genome.wustl.edu	37	1	208390238	208390238	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	208390238	208390238	T	G	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	missense	c.1030	p.K344Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				81	0	0	33	42	56
FAM43B	0	genome.wustl.edu	37	1	20879493	20879493	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	20879493	20879493	C	T	SNP	FAM43B	ENST00000332947	human	ensembl	74_37	+1	known	silent	c.27	p.F9	1.000	NULL	smart_PTB/PI_dom	-	no_errors	FAM43B	HGNC	ENSG00000183114				53	0	0	28	8	22.2222
KIF17	0	genome.wustl.edu	37	1	20991151	20991151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	20991151	20991151	C	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	missense	c.3016	p.E1006K	0.915	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245				184	0	0	95	30	24
TRAF3IP3	0	genome.wustl.edu	37	1	209936186	209936186	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	209936186	209936186	A	C	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	silent	c.522	p.T174	0.828	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				160	0	0	139	62	30.8458
TRAF3IP3	0	genome.wustl.edu	37	1	209936841	209936841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	209936841	209936841	C	T	SNP	TRAF3IP3	ENST00000367024	human	ensembl	74_37	+1	known	missense	c.611	p.A204V	1.000	NULL	NULL	-	no_errors	TRAF3IP3	HGNC	ENSG00000009790				75	0	0	57	14	19.7183
DIEXF	0	genome.wustl.edu	37	1	210024594	210024594	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	210024594	210024594	G	A	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	silent	c.2073	p.P691	0.610	pfam_Digest_organ_expansion_fac-prd	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				67	0	0	68	20	22.7273
SYT14	0	genome.wustl.edu	37	1	210334179	210334179	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	210334179	210334179	T	G	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	missense	c.1652	p.F551C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469				145	0	0	121	33	21.4286
SYT14	0	genome.wustl.edu	37	1	210334372	210334372	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	210334372	210334372	G	A	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	silent	c.1845	p.A615	0.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469				124	0	0	122	19	13.4752
KCNH1	0	genome.wustl.edu	37	1	210856661	210856661	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	210856661	210856661	A	G	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.2932	p.S978P	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				192	0	0	145	33	18.5393
KCNH1	0	genome.wustl.edu	37	1	210977369	210977369	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	210977369	210977369	C	T	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	silent	c.1602	p.E534	1.000	superfamily_cNMP-bd-like,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				117	0	0	60	50	45.4545
KCNH1	0	genome.wustl.edu	37	1	211093016	211093016	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	211093016	211093016	C	A	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.1428	p.E476D	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				205	0	0	181	47	20.614
RCOR3	0	genome.wustl.edu	37	1	211451540	211451540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	211451540	211451540	C	T	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	missense	c.424	p.R142C	1.000	NULL	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				175	0	0	177	47	20.9821
RD3	0	genome.wustl.edu	37	1	211654646	211654646	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	211654646	211654646	G	A	SNP	RD3	ENST00000367002	human	ensembl	74_37	-1	known	nonsense	c.112	p.R38*	0.999	NULL	NULL	-	no_errors	RD3	HGNC	ENSG00000198570				161	0	0	60	72	54.5455
LPGAT1	0	genome.wustl.edu	37	1	211956643	211956643	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	211956643	211956643	T	G	SNP	LPGAT1	ENST00000366997	human	ensembl	74_37	-1	known	missense	c.655	p.K219Q	0.995	pfam_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LPGAT1	HGNC	ENSG00000123684				83	0	0	67	33	33
EIF4G3	0	genome.wustl.edu	37	1	21220089	21220089	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	21220089	21220089	C	T	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.2024	p.R675Q	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				104	0	0	63	31	32.9787
PPP2R5A	0	genome.wustl.edu	37	1	212515594	212515594	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	212515594	212515594	G	A	SNP	PPP2R5A	ENST00000261461	human	ensembl	74_37	+1	known	missense	c.545	p.R182Q	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5A	HGNC	ENSG00000066027				91	0	0	105	26	19.8473
RPS6KC1	0	genome.wustl.edu	37	1	213341250	213341250	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	213341250	213341250	G	A	SNP	RPS6KC1	ENST00000366960	human	ensembl	74_37	+1	known	silent	c.885	p.E295	0.991	pfam_MIT,smart_MIT	pfam_Prot_kinase_dom,pfam_MIT,pfam_Phox,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Phox,smart_Phox,smart_MIT,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Phox,pfscan_Prot_kinase_dom	-	no_errors	RPS6KC1	HGNC	ENSG00000136643				77	0	0	43	39	47.561
PROX1	0	genome.wustl.edu	37	1	214171593	214171593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214171593	214171593	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	missense	c.1715	p.S572L	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				131	0	0	132	32	19.5122
SMYD2	0	genome.wustl.edu	37	1	214492285	214492285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214492285	214492285	G	A	SNP	SMYD2	ENST00000366957	human	ensembl	74_37	+1	known	missense	c.493	p.G165R	0.907	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499				117	0	0	101	36	26.2774
PTPN14	0	genome.wustl.edu	37	1	214551407	214551407	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214551407	214551407	C	A	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	missense	c.2583	p.Q861H	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104				108	0	0	69	18	20.6897
CENPF	0	genome.wustl.edu	37	1	214794191	214794191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214794191	214794191	G	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.767	p.R256Q	0.008	pfam_Centromere_CenpF_N	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				142	0	0	150	41	21.466
CENPF	0	genome.wustl.edu	37	1	214802406	214802406	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214802406	214802406	A	C	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.1086	p.Q362H	0.997	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				41	0	0	47	20	29.8507
CENPF	0	genome.wustl.edu	37	1	214813974	214813974	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214813974	214813974	G	A	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.2293	p.D765N	0.001	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				70	0	0	56	13	18.8406
CENPF	0	genome.wustl.edu	37	1	214815908	214815908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214815908	214815908	G	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.4227	p.E1409D	0.967	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				54	0	0	69	12	14.8148
CENPF	0	genome.wustl.edu	37	1	214816283	214816283	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214816283	214816283	G	T	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.4602	p.E1534D	0.061	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				81	0	0	72	29	28.7129
CENPF	0	genome.wustl.edu	37	1	214826201	214826201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214826201	214826201	A	G	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.8191	p.K2731E	0.695	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				78	0	0	43	55	56.1224
KCNK2	0	genome.wustl.edu	37	1	215259996	215259996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	215259996	215259996	C	T	SNP	KCNK2	ENST00000444842	human	ensembl	74_37	+1	known	missense	c.332	p.S111L	0.929	prints_2pore_dom_K_chnl_TREK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482				216	0	0	113	118	51.0823
KCNK2	0	genome.wustl.edu	37	1	215297989	215297989	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	215297989	215297989	C	T	SNP	KCNK2	ENST00000444842	human	ensembl	74_37	+1	known	missense	c.371	p.A124V	1.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK2	HGNC	ENSG00000082482				145	0	0	153	50	24.6305
ECE1	0	genome.wustl.edu	37	1	21546588	21546588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	21546588	21546588	C	T	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	missense	c.2173	p.E725K	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298				87	0	0	27	16	37.2093
ECE1	0	genome.wustl.edu	37	1	21551860	21551860	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	21551860	21551860	C	T	SNP	ECE1	ENST00000374893	human	ensembl	74_37	-1	known	silent	c.1923	p.Q641	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	ECE1	HGNC	ENSG00000117298				106	0	0	49	14	22.2222
KCTD3	0	genome.wustl.edu	37	1	215792219	215792219	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	215792219	215792219	C	A	SNP	KCTD3	ENST00000465650	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.047	-	-	-	no_errors	KCTD3	HGNC	ENSG00000136636				80	0	0	72	14	16.2791
KCTD3	0	genome.wustl.edu	37	1	215792499	215792499	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	215792499	215792499	A	C	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	silent	c.1752	p.V584	0.995	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				157	0	0	129	35	21.3415
USH2A	0	genome.wustl.edu	37	1	215812516	215812516	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	215812516	215812516	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	nonsense	c.15033	p.Y5011*	0.891	NULL	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				231	0	0	239	62	20.598
USH2A	0	genome.wustl.edu	37	1	216108085	216108085	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	216108085	216108085	T	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.7173	p.E2391D	0.048	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				130	0	0	75	68	47.5524
USH2A	0	genome.wustl.edu	37	1	216270438	216270438	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	216270438	216270438	A	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.4745	p.L1582R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				49	0	0	54	7	11.4754
USH2A	0	genome.wustl.edu	37	1	216380731	216380731	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	216380731	216380731	G	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.3200	p.S1067Y	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				130	0	0	107	28	20.7407
USH2A	0	genome.wustl.edu	37	1	216420132	216420132	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	216420132	216420132	A	G	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.2604	p.C868	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				276	0	0	245	78	24.1486
SPATA17	0	genome.wustl.edu	37	1	217947760	217947760	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	217947760	217947760	C	T	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	nonsense	c.604	p.R202*	0.007	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				108	0	0	101	12	10.6195
SPATA17	0	genome.wustl.edu	37	1	217955597	217955597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	217955597	217955597	G	A	SNP	SPATA17	ENST00000366933	human	ensembl	74_37	+1	known	missense	c.805	p.D269N	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SPATA17	HGNC	ENSG00000162814				77	0	0	77	20	20.6186
TGFB2	0	genome.wustl.edu	37	1	218578621	218578621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	218578621	218578621	C	T	SNP	TGFB2	ENST00000366929	human	ensembl	74_37	+1	known	missense	c.541	p.R181C	1.000	pirsf_TGF-beta,pfam_TGF-b_N,prints_TGFb2	pirsf_TGF-beta,pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_TGFb2,prints_TGF-beta	-	no_errors	TGFB2	HGNC	ENSG00000092969				340	0	0	259	63	19.5652
LYPLAL1	0	genome.wustl.edu	37	1	219384943	219384943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	219384943	219384943	C	A	SNP	LYPLAL1	ENST00000366928	human	ensembl	74_37	+1	known	missense	c.587	p.S196Y	0.825	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro	pfam_PLipase/COase/thioEstase,pfam_Dienelactn_hydro,pfam_Esterase_put	-	no_errors	LYPLAL1	HGNC	ENSG00000143353				155	0	0	136	50	26.8817
USP48	0	genome.wustl.edu	37	1	22005786	22005786	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	22005786	22005786	T	G	SNP	USP48	ENST00000479177	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP48	HGNC	ENSG00000090686				43	0	0	27	13	32.5
IARS2	0	genome.wustl.edu	37	1	220279257	220279257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	220279257	220279257	G	A	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.1091	p.C364Y	1.000	pfam_aa-tRNA-synth_Ia,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				117	0	0	124	43	25.7485
MIR215	0	genome.wustl.edu	37	1	220291244	220291244	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	220291244	220291244	A	C	SNP	MIR215	ENST00000384858	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR215	HGNC	ENSG00000207590				31	0	0	14	17	54.8387
RAB3GAP2	0	genome.wustl.edu	37	1	220440069	220440069	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	220440069	220440069	C	A	SNP	RAB3GAP2	ENST00000462353	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.471	-	-	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				76	0	0	35	38	52.0548
USP48	0	genome.wustl.edu	37	1	22055105	22055105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	22055105	22055105	C	T	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	missense	c.1408	p.E470K	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				172	0	0	84	53	38.6861
USP48	0	genome.wustl.edu	37	1	22056301	22056301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	22056301	22056301	C	T	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	missense	c.1196	p.R399H	0.992	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				178	0	0	106	50	32.0513
USP48	0	genome.wustl.edu	37	1	22084131	22084131	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	22084131	22084131	A	C	SNP	USP48	ENST00000489108	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	USP48	HGNC	ENSG00000090686				37	0	0	43	10	18.8679
MIA3	0	genome.wustl.edu	37	1	222802768	222802768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	222802768	222802768	G	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.2206	p.A736T	0.986	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				115	0	0	93	29	23.7705
MIA3	0	genome.wustl.edu	37	1	222819059	222819059	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	222819059	222819059	A	C	SNP	MIA3	ENST00000470521	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIA3	HGNC	ENSG00000154305				41	0	0	39	11	22
BROX	0	genome.wustl.edu	37	1	222906034	222906034	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	222906034	222906034	A	G	SNP	BROX	ENST00000539697	human	ensembl	74_37	+1	known	missense	c.1118	p.D373G	1.000	pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	BROX	HGNC	ENSG00000162819				58	0	0	47	17	26.5625
DISP1	0	genome.wustl.edu	37	1	223177427	223177427	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223177427	223177427	G	A	SNP	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	silent	c.2688	p.E896	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				122	0	0	73	22	23.1579
SUSD4	0	genome.wustl.edu	37	1	223395482	223395482	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223395482	223395482	A	G	SNP	SUSD4	ENST00000478605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SUSD4	HGNC	ENSG00000143502				132	0	0	71	58	44.9612
C1orf65	0	genome.wustl.edu	37	1	223568033	223568033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223568033	223568033	C	T	SNP	C1orf65	ENST00000366875	human	ensembl	74_37	+1	known	missense	c.1216	p.R406C	0.000	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395				61	0	0	28	25	47.1698
CAPN2	0	genome.wustl.edu	37	1	223946952	223946952	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223946952	223946952	T	C	SNP	CAPN2	ENST00000474026	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CAPN2	HGNC	ENSG00000162909				59	0	0	39	18	31.5789
TP53BP2	0	genome.wustl.edu	37	1	223984003	223984003	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223984003	223984003	C	T	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	silent	c.2238	p.E746	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				226	0	0	169	60	26.2009
TP53BP2	0	genome.wustl.edu	37	1	223988509	223988509	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	223988509	223988509	G	T	SNP	TP53BP2	ENST00000343537	human	ensembl	74_37	-1	known	missense	c.1229	p.S410Y	0.592	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	TP53BP2	HGNC	ENSG00000143514				73	0	0	65	15	18.75
FBXO28	0	genome.wustl.edu	37	1	224321810	224321810	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	224321810	224321810	C	T	SNP	FBXO28	ENST00000366862	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO28	HGNC	ENSG00000143756				33	0	0	13	22	62.8571
CNIH3	0	genome.wustl.edu	37	1	224849073	224849073	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	224849073	224849073	G	A	SNP	CNIH3	ENST00000496277	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CNIH3	HGNC	ENSG00000143786				26	0	0	16	14	46.6667
LBR	0	genome.wustl.edu	37	1	225599097	225599097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	225599097	225599097	C	T	SNP	LBR	ENST00000272163	human	ensembl	74_37	-1	known	missense	c.1130	p.R377Q	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_Lamin-B_rcpt_of_tudor,pfam_DUF1295,smart_Tudor	-	no_errors	LBR	HGNC	ENSG00000143815				118	0	0	76	85	52.795
LIN9	0	genome.wustl.edu	37	1	226421140	226421140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	226421140	226421140	G	A	SNP	LIN9	ENST00000328205	human	ensembl	74_37	-1	known	missense	c.1378	p.R460W	0.939	NULL	pfam_LIN-9/ALY1	-	no_errors	LIN9	HGNC	ENSG00000183814				192	0	0	175	48	21.5247
ITPKB	0	genome.wustl.edu	37	1	226825420	226825420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	226825420	226825420	C	T	SNP	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	missense	c.2585	p.R862Q	0.994	pfam_IPK	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772				45	0	0	32	14	30.4348
CDC42BPA	0	genome.wustl.edu	37	1	227219208	227219208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227219208	227219208	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	74_37	-1	known	missense	c.3461	p.A1154V	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776				140	0	0	119	37	23.7179
CDC42BPA	0	genome.wustl.edu	37	1	227333279	227333279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227333279	227333279	G	A	SNP	CDC42BPA	ENST00000334218	human	ensembl	74_37	-1	known	missense	c.1054	p.R352W	1.000	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776				122	0	0	149	42	21.9895
CDC42BPA	0	genome.wustl.edu	37	1	227400862	227400862	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227400862	227400862	T	G	SNP	CDC42BPA	ENST00000334218	human	ensembl	74_37	-1	known	missense	c.329	p.K110T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776				41	0	0	71	17	19.3182
ZNF678	0	genome.wustl.edu	37	1	227842301	227842301	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227842301	227842301	G	T	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	missense	c.515	p.R172I	0.760	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450				89	0	0	88	28	24.1379
ZNF678	0	genome.wustl.edu	37	1	227843225	227843225	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227843225	227843225	G	T	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	missense	c.1439	p.R480I	0.309	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450				52	0	0	56	15	21.1268
ZNF678	0	genome.wustl.edu	37	1	227843477	227843477	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	227843477	227843477	G	T	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	missense	c.1691	p.R564I	0.979	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450				81	0	0	56	40	41.6667
ZBTB40	0	genome.wustl.edu	37	1	22816534	22816534	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	22816534	22816534	T	C	SNP	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	silent	c.93	p.G31	0.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				103	0	0	56	24	30
WNT3A	0	genome.wustl.edu	37	1	228238550	228238550	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228238550	228238550	C	T	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	silent	c.507	p.F169	0.977	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				87	0	0	45	15	25
WNT3A	0	genome.wustl.edu	37	1	228238597	228238597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228238597	228238597	G	A	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	missense	c.554	p.R185H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				54	0	0	19	17	47.2222
ARF1	0	genome.wustl.edu	37	1	228285837	228285837	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228285837	228285837	G	A	SNP	ARF1	ENST00000470558	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARF1	HGNC	ENSG00000143761				22	0	0	14	4	22.2222
ARF1	0	genome.wustl.edu	37	1	228285857	228285857	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228285857	228285857	G	A	SNP	ARF1	ENST00000470558	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.852	-	-	-	no_errors	ARF1	HGNC	ENSG00000143761				13	0	0	11	4	26.6667
LOC100129534	0	genome.wustl.edu	37	1	2283185	2283185	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	2283185	2283185	C	A	SNP	LOC100129534	ENST00000602865	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP4-740C4.6	Clone_based_vega_gene	ENSG00000269896				54	0	0	21	9	30
OBSCN	0	genome.wustl.edu	37	1	228402664	228402664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228402664	228402664	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.1693	p.E565K	0.663	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				41	0	0	29	11	27.5
OBSCN	0	genome.wustl.edu	37	1	228434331	228434331	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228434331	228434331	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3860	p.T1287I	0.998	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				165	0	0	70	69	49.6403
OBSCN	0	genome.wustl.edu	37	1	228451947	228451947	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228451947	228451947	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.4716	p.K1572N	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				124	0	0	48	58	54.717
OBSCN	0	genome.wustl.edu	37	1	228511096	228511096	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228511096	228511096	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.15441	p.C5147	0.550	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				33	0	0	18	3	14.2857
OBSCN	0	genome.wustl.edu	37	1	228527683	228527683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	228527683	228527683	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.17296	p.D5766N	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				130	0	0	56	53	48.6239
NUP133	0	genome.wustl.edu	37	1	229580703	229580703	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	229580703	229580703	C	A	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.3292	p.D1098Y	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				110	0	0	95	82	46.3277
ABCB10	0	genome.wustl.edu	37	1	229653939	229653939	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	229653939	229653939	A	C	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.2204	p.F735C	0.249	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				80	0	0	59	53	47.3214
ABCB10	0	genome.wustl.edu	37	1	229675310	229675310	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	229675310	229675310	A	C	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.1232	p.L411R	0.995	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				136	0	0	71	69	49.2857
ABCB10	0	genome.wustl.edu	37	1	229683424	229683424	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	229683424	229683424	C	A	SNP	ABCB10	ENST00000344517	human	ensembl	74_37	-1	known	missense	c.743	p.R248I	0.993	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB10	HGNC	ENSG00000135776				87	0	0	72	15	17.2414
PGBD5	0	genome.wustl.edu	37	1	230468774	230468774	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	230468774	230468774	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	silent	c.1179	p.C393	0.943	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				17	0	0	9	7	43.75
COG2	0	genome.wustl.edu	37	1	230795218	230795218	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	230795218	230795218	C	T	SNP	COG2	ENST00000366669	human	ensembl	74_37	+1	known	silent	c.81	p.F27	0.995	pfam_COG_su2_N	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775				102	0	0	46	60	56.6038
COG2	0	genome.wustl.edu	37	1	230805215	230805215	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	230805215	230805215	G	A	SNP	COG2	ENST00000366669	human	ensembl	74_37	+1	known	silent	c.708	p.T236	0.567	NULL	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775				70	0	0	47	47	50
TTC13	0	genome.wustl.edu	37	1	231079614	231079614	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	231079614	231079614	C	T	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	missense	c.610	p.E204K	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643				131	0	0	123	42	25.4545
TRIM67	0	genome.wustl.edu	37	1	231349577	231349577	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	231349577	231349577	T	C	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	missense	c.2140	p.C714R	0.995	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				192	0	0	79	96	54.8571
C1orf131	0	genome.wustl.edu	37	1	231374789	231374789	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	231374789	231374789	C	T	SNP	C1orf131	ENST00000366649	human	ensembl	74_37	-1	known	silent	c.264	p.S88	0.017	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633				67	0	0	74	26	26
EXOC8	0	genome.wustl.edu	37	1	231471824	231471824	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	231471824	231471824	G	A	SNP	EXOC8	ENST00000360394	human	ensembl	74_37	-1	known	silent	c.1668	p.H556	1.000	NULL	superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903				112	0	0	65	73	52.8986
EPHB2	0	genome.wustl.edu	37	1	23235657	23235657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	23235657	23235657	A	G	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.2495	p.N832S	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216				93	0	0	54	17	23.9437
SIPA1L2	0	genome.wustl.edu	37	1	232538143	232538143	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	232538143	232538143	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.5017	p.R1673W	0.586	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				48	0	0	29	26	47.2727
SIPA1L2	0	genome.wustl.edu	37	1	232596771	232596771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	232596771	232596771	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.2957	p.R986H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				176	0	0	141	42	22.9508
SIPA1L2	0	genome.wustl.edu	37	1	232615380	232615380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	232615380	232615380	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.2078	p.R693K	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				83	0	0	89	15	14.4231
SIPA1L2	0	genome.wustl.edu	37	1	232649902	232649902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	232649902	232649902	G	A	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.1184	p.A395V	0.931	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991				289	1	0.344828	132	132	50
KIAA1804	0	genome.wustl.edu	37	1	233482190	233482190	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	233482190	233482190	T	G	SNP	KIAA1804	ENST00000366624	human	ensembl	74_37	+1	known	missense	c.808	p.L270V	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MLK4	Uniprot_gn	ENSG00000143674				78	0	0	61	26	29.8851
KIAA1804	0	genome.wustl.edu	37	1	233490640	233490640	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	233490640	233490640	G	T	SNP	KIAA1804	ENST00000366624	human	ensembl	74_37	+1	known	missense	c.1194	p.L398F	0.997	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MLK4	Uniprot_gn	ENSG00000143674				178	0	0	77	83	51.875
COA6	0	genome.wustl.edu	37	1	234509574	234509574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	234509574	234509574	C	A	SNP	COA6	ENST00000366613	human	ensembl	74_37	+1	novel	missense	c.110	p.S37Y	0.001	superfamily_Cyt_c_oxidase_su6B	pfam_Cyt_c_oxidase_su6B,superfamily_Cyt_c_oxidase_su6B	-	no_errors	COA6	HGNC	ENSG00000168275				81	0	0	58	16	21.6216
ARID4B	0	genome.wustl.edu	37	1	235377167	235377167	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235377167	235377167	T	G	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	missense	c.1758	p.K586N	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Tudor	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				191	0	0	101	131	56.4655
ARID4B	0	genome.wustl.edu	37	1	235383751	235383751	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235383751	235383751	C	A	SNP	ARID4B	ENST00000264183	human	ensembl	74_37	-1	known	nonsense	c.1273	p.E425*	1.000	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4B	HGNC	ENSG00000054267				44	0	0	65	17	20.7317
LYST	0	genome.wustl.edu	37	1	235887376	235887376	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235887376	235887376	G	T	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.9267	p.I3089	0.999	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				86	0	0	95	23	19.4915
LYST	0	genome.wustl.edu	37	1	235897198	235897198	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235897198	235897198	C	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.8544	p.K2848N	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				58	0	0	91	25	21.5517
LYST	0	genome.wustl.edu	37	1	235944236	235944236	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235944236	235944236	C	A	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	nonsense	c.5143	p.E1715*	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				23	0	0	32	30	48.3871
LYST	0	genome.wustl.edu	37	1	235972028	235972028	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235972028	235972028	T	G	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	missense	c.2090	p.Q697P	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				53	0	0	57	12	17.3913
LYST	0	genome.wustl.edu	37	1	235972915	235972915	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	235972915	235972915	T	C	SNP	LYST	ENST00000389793	human	ensembl	74_37	-1	known	silent	c.1203	p.L401	0.972	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				174	0	0	95	118	55.3991
HNRNPR	0	genome.wustl.edu	37	1	23637094	23637094	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	23637094	23637094	A	G	SNP	HNRNPR	ENST00000374616	human	ensembl	74_37	-1	known	silent	c.1764	p.R588	0.996	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944				268	0	0	138	71	33.9713
HEATR1	0	genome.wustl.edu	37	1	236746034	236746034	+	Splice_Site	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236746034	236746034	A	C	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	splice_site	c.2562+2	e18+2	1.000	-	-	-	no_errors	HEATR1	HGNC	ENSG00000119285				144	0	0	131	44	25.1429
HEATR1	0	genome.wustl.edu	37	1	236749198	236749198	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236749198	236749198	G	A	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.1971	p.I657	0.536	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				51	0	0	60	16	21.0526
HEATR1	0	genome.wustl.edu	37	1	236754253	236754253	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236754253	236754253	A	C	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	missense	c.1424	p.F475C	1.000	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				38	0	0	30	24	44.4444
ACTN2	0	genome.wustl.edu	37	1	236907933	236907933	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236907933	236907933	G	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1263	p.E421D	0.987	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				52	0	0	40	13	24.5283
ACTN2	0	genome.wustl.edu	37	1	236908053	236908053	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236908053	236908053	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	silent	c.1383	p.I461	0.553	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				80	0	0	35	36	50.7042
MTR	0	genome.wustl.edu	37	1	236992548	236992548	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	236992548	236992548	A	C	SNP	MTR	ENST00000366577	human	ensembl	74_37	+1	known	missense	c.1055	p.E352A	1.000	superfamily_S_MeTrfase,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984				163	1	0.609756	155	36	18.8482
RYR2	0	genome.wustl.edu	37	1	237617847	237617847	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237617847	237617847	G	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1443	p.K481N	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				39	0	0	40	8	16.6667
ASAP3	0	genome.wustl.edu	37	1	23768696	23768696	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	23768696	23768696	G	T	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	missense	c.654	p.F218L	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				13	0	0	8	7	46.6667
RYR2	0	genome.wustl.edu	37	1	237880516	237880516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237880516	237880516	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.10336	p.E3446K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				40	0	0	14	9	39.1304
RYR2	0	genome.wustl.edu	37	1	237935360	237935360	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237935360	237935360	A	G	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.11624	p.N3875S	1.000	pfam_RIH_assoc-dom	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				8	0	0	4	5	55.5556
RYR2	0	genome.wustl.edu	37	1	237947276	237947276	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237947276	237947276	C	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	silent	c.12282	p.H4094	0.383	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				42	0	0	41	21	33.871
RYR2	0	genome.wustl.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237947421	237947421	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12427	p.E4143K	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				118	0	0	88	30	25.4237
RYR2	0	genome.wustl.edu	37	1	237947567	237947567	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	237947567	237947567	G	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12573	p.K4191N	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				128	0	0	126	39	23.6364
LOC100130331	0	genome.wustl.edu	37	1	238090214	238090214	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	238090214	238090214	A	C	SNP	LOC100130331	ENST00000450451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-193H5.1	Clone_based_vega_gene	ENSG00000237250				27	0	0	17	11	39.2857
CHRM3	0	genome.wustl.edu	37	1	240071148	240071148	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	240071148	240071148	C	T	SNP	CHRM3	ENST00000255380	human	ensembl	74_37	+1	known	nonsense	c.397	p.R133*	0.948	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M3_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM3	HGNC	ENSG00000133019				117	0	0	78	32	29.0909
FMN2	0	genome.wustl.edu	37	1	240370340	240370340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	240370340	240370340	C	T	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.2228	p.S743L	0.998	NULL	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				71	0	0	49	11	18.3333
FMN2	0	genome.wustl.edu	37	1	240492436	240492436	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	240492436	240492436	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4276	p.E1426K	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				103	0	0	95	27	22.1311
FMN2	0	genome.wustl.edu	37	1	240492457	240492457	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	240492457	240492457	A	C	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4297	p.K1433Q	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				94	0	0	87	39	30.9524
FMN2	0	genome.wustl.edu	37	1	240497233	240497233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	240497233	240497233	G	A	SNP	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	missense	c.4631	p.R1544Q	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				38	0	0	32	5	13.5135
WDR64	0	genome.wustl.edu	37	1	241946608	241946608	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	241946608	241946608	C	A	SNP	WDR64	ENST00000366552	human	ensembl	74_37	+1	known	missense	c.2600	p.S867Y	0.992	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR64	HGNC	ENSG00000162843				72	0	0	70	13	15.6627
PLD5	0	genome.wustl.edu	37	1	242271009	242271009	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	242271009	242271009	C	T	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	silent	c.1203	p.A401	0.996	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				164	0	0	167	60	26.4317
PLD5	0	genome.wustl.edu	37	1	242271076	242271076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	242271076	242271076	C	T	SNP	PLD5	ENST00000536534	human	ensembl	74_37	-1	known	missense	c.1136	p.R379Q	1.000	NULL	smart_PLipase_D/transphosphatidylase	-	no_errors	PLD5	HGNC	ENSG00000180287				149	0	0	88	77	46.6667
CEP170	0	genome.wustl.edu	37	1	243328764	243328764	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	243328764	243328764	A	C	SNP	CEP170	ENST00000366542	human	ensembl	74_37	-1	known	nonsense	c.2498	p.L833*	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,superfamily_Fibronectin_type3,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170	HGNC	ENSG00000143702				27	0	0	17	17	50
AKT3	0	genome.wustl.edu	37	1	243778458	243778458	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	243778458	243778458	T	C	SNP	AKT3	ENST00000263826	human	ensembl	74_37	-1	known	silent	c.567	p.E189	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom	-	no_errors	AKT3	HGNC	ENSG00000117020				40	0	0	22	23	51.1111
MYOM3	0	genome.wustl.edu	37	1	24410928	24410928	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	24410928	24410928	G	A	SNP	MYOM3	ENST00000475306	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	MYOM3	HGNC	ENSG00000142661				101	0	0	49	37	43.0233
MYOM3	0	genome.wustl.edu	37	1	24413228	24413228	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	24413228	24413228	C	A	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.1707	p.K569N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				142	0	0	64	23	26.4368
ZBTB18	0	genome.wustl.edu	37	1	244217801	244217801	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	244217801	244217801	C	T	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	missense	c.725	p.S242L	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456				174	0	0	144	47	24.6073
MYOM3	0	genome.wustl.edu	37	1	24421951	24421951	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	24421951	24421951	G	A	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	silent	c.774	p.F258	0.999	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661				173	0	0	97	34	25.9542
C1orf100	0	genome.wustl.edu	37	1	244552296	244552296	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	244552296	244552296	G	A	SNP	C1orf100	ENST00000308105	human	ensembl	74_37	+1	known	silent	c.369	p.P123	0.680	NULL	NULL	-	no_errors	C1orf100	HGNC	ENSG00000173728				156	0	0	126	43	25.4438
HNRNPU	0	genome.wustl.edu	37	1	245022042	245022042	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	245022042	245022042	T	C	SNP	HNRNPU	ENST00000283179	human	ensembl	74_37	-1	known	missense	c.1219	p.T407A	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPU	HGNC	ENSG00000153187				29	0	0	22	27	55.102
EFCAB2	0	genome.wustl.edu	37	1	245245415	245245415	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	245245415	245245415	C	T	SNP	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	nonsense	c.622	p.R208*	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666				128	0	0	123	29	19.0789
KIF26B	0	genome.wustl.edu	37	1	245809568	245809568	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	245809568	245809568	A	G	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	silent	c.2244	p.K748	0.967	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				34	0	0	45	3	6.25
KIF26B	0	genome.wustl.edu	37	1	245849116	245849116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	245849116	245849116	G	A	SNP	KIF26B	ENST00000407071	human	ensembl	74_37	+1	known	missense	c.2831	p.S944N	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF26B	HGNC	ENSG00000162849				57	0	0	30	10	25
TFB2M	0	genome.wustl.edu	37	1	246727664	246727664	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	246727664	246727664	A	C	SNP	TFB2M	ENST00000366514	human	ensembl	74_37	-1	known	missense	c.386	p.F129C	1.000	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851				70	0	0	51	27	34.6154
CNST	0	genome.wustl.edu	37	1	246811464	246811464	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	246811464	246811464	C	T	SNP	CNST	ENST00000483271	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CNST	HGNC	ENSG00000162852				15	0	0	11	5	31.25
ZNF695	0	genome.wustl.edu	37	1	247162690	247162690	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	247162690	247162690	C	T	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	silent	c.219	p.E73	0.418	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472				77	0	0	38	41	51.8987
NIPAL3	0	genome.wustl.edu	37	1	24746100	24746100	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	24746100	24746100	C	T	SNP	NIPAL3	ENST00000374399	human	ensembl	74_37	+1	known	silent	c.63	p.S21	0.000	NULL	pfam_Mg_trans_NIPA	-	no_errors	NIPAL3	HGNC	ENSG00000001461				42	0	0	17	20	54.0541
NLRP3	0	genome.wustl.edu	37	1	247582372	247582372	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	247582372	247582372	G	A	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	silent	c.276	p.P92	0.000	superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				48	0	0	37	7	15.9091
NLRP3	0	genome.wustl.edu	37	1	247588450	247588450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	247588450	247588450	G	A	SNP	NLRP3	ENST00000336119	human	ensembl	74_37	+1	known	missense	c.1705	p.E569K	0.853	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP3	HGNC	ENSG00000162711				79	0	0	35	39	52.7027
OR2G3	0	genome.wustl.edu	37	1	247769596	247769596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	247769596	247769596	G	A	SNP	OR2G3	ENST00000320002	human	ensembl	74_37	+1	known	missense	c.709	p.A237T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476				82	0	0	51	33	39.2857
OR14A16	0	genome.wustl.edu	37	1	247978292	247978292	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	247978292	247978292	A	G	SNP	OR14A16	ENST00000357627	human	ensembl	74_37	-1	known	missense	c.740	p.L247S	0.035	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14A16	HGNC	ENSG00000196772				74	0	0	58	22	27.5
TRIM58	0	genome.wustl.edu	37	1	248039649	248039649	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248039649	248039649	T	G	SNP	TRIM58	ENST00000366481	human	ensembl	74_37	+1	known	missense	c.1319	p.F440C	0.112	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722				280	0	0	135	123	47.6744
OR2AK2	0	genome.wustl.edu	37	1	248128684	248128684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248128684	248128684	A	C	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	missense	c.51	p.K17N	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080				149	0	0	108	39	26.5306
OR2L2	0	genome.wustl.edu	37	1	248202363	248202363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248202363	248202363	G	A	SNP	OR2L2	ENST00000366479	human	ensembl	74_37	+1	known	missense	c.794	p.R265Q	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L2	HGNC	ENSG00000203663				168	0	0	141	45	24.1935
OR2L3	0	genome.wustl.edu	37	1	248224049	248224049	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248224049	248224049	T	C	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	silent	c.66	p.I22	0.023	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				470	0	0	233	268	53.493
OR2L3	0	genome.wustl.edu	37	1	248224853	248224853	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248224853	248224853	C	T	SNP	OR2L3	ENST00000359959	human	ensembl	74_37	+1	known	silent	c.870	p.S290	0.998	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L3	HGNC	ENSG00000198128				133	0	0	55	86	60.9929
OR2M4	0	genome.wustl.edu	37	1	248403071	248403071	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248403071	248403071	C	A	SNP	OR2M4	ENST00000306687	human	ensembl	74_37	+1	known	missense	c.841	p.L281I	0.706	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M4	HGNC	ENSG00000171180				98	0	0	45	64	58.7156
OR2T12	0	genome.wustl.edu	37	1	248458301	248458301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248458301	248458301	C	T	SNP	OR2T12	ENST00000317996	human	ensembl	74_37	-1	known	missense	c.580	p.E194K	0.011	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T12	HGNC	ENSG00000177201				138	0	0	118	26	18.0556
OR2M7	0	genome.wustl.edu	37	1	248486997	248486997	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248486997	248486997	G	T	SNP	OR2M7	ENST00000317965	human	ensembl	74_37	-1	known	missense	c.874	p.L292I	0.095	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M7	HGNC	ENSG00000177186				98	0	0	81	35	30.1724
OR2T1	0	genome.wustl.edu	37	1	248569654	248569654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248569654	248569654	A	G	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.359	p.D120G	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				285	0	0	205	46	18.3267
OR2T1	0	genome.wustl.edu	37	1	248570369	248570369	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248570369	248570369	C	A	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.1074	p.F358L	0.006	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				259	0	0	185	57	23.5537
OR2G6	0	genome.wustl.edu	37	1	248684964	248684964	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248684964	248684964	A	G	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.17	p.N6S	0.009	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				127	0	0	152	34	18.2796
OR2G6	0	genome.wustl.edu	37	1	248685634	248685634	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248685634	248685634	A	C	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.687	p.K229N	0.299	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558				124	0	0	105	22	17.3228
OR14I1	0	genome.wustl.edu	37	1	248845530	248845530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248845530	248845530	C	T	SNP	OR14I1	ENST00000342623	human	ensembl	74_37	-1	known	missense	c.76	p.A26T	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR14I1	HGNC	ENSG00000189181				79	0	0	50	34	40.4762
SYF2	0	genome.wustl.edu	37	1	25554613	25554613	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	25554613	25554613	A	C	SNP	SYF2	ENST00000236273	human	ensembl	74_37	-1	known	missense	c.372	p.F124L	1.000	pfam_mRNA_splic_SYF2	pfam_mRNA_splic_SYF2	-	no_errors	SYF2	HGNC	ENSG00000117614				115	0	0	65	34	34.3434
RHD	0	genome.wustl.edu	37	1	25655390	25655390	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	25655390	25655390	T	G	SNP	RHD	ENST00000328664	human	ensembl	74_37	+1	known	missense	c.1229	p.F410C	0.996	NULL	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHD	HGNC	ENSG00000187010				45	0	0	22	16	42.1053
LDLRAP1	0	genome.wustl.edu	37	1	25891489	25891489	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	25891489	25891489	C	T	SNP	LDLRAP1	ENST00000488127	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LDLRAP1	HGNC	ENSG00000157978				25	0	0	15	9	37.5
MAN1C1	0	genome.wustl.edu	37	1	26110217	26110217	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26110217	26110217	C	T	SNP	MAN1C1	ENST00000374332	human	ensembl	74_37	+1	known	silent	c.1830	p.T610	0.003	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1C1	HGNC	ENSG00000117643				85	0	0	48	26	35.1351
AUNIP	0	genome.wustl.edu	37	1	26185789	26185789	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26185789	26185789	C	T	SNP	AUNIP	ENST00000538789	human	ensembl	74_37	-1	known	silent	c.60	p.L20	1.000	NULL	NULL	-	no_errors	AUNIP	HGNC	ENSG00000127423				11	0	0	4	2	33.3333
SLC30A2	0	genome.wustl.edu	37	1	26371619	26371619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26371619	26371619	G	A	SNP	SLC30A2	ENST00000374276	human	ensembl	74_37	-1	known	missense	c.140	p.A47V	0.000	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A2	HGNC	ENSG00000158014				277	1	0.359712	110	54	32.9268
FAM110D	0	genome.wustl.edu	37	1	26487894	26487894	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26487894	26487894	C	T	SNP	FAM110D	ENST00000374268	human	ensembl	74_37	+1	known	nonsense	c.112	p.R38*	0.771	NULL	NULL	-	no_errors	FAM110D	HGNC	ENSG00000197245				16	0	0	6	3	33.3333
CD52	0	genome.wustl.edu	37	1	26646686	26646686	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26646686	26646686	A	C	SNP	CD52	ENST00000374213	human	ensembl	74_37	+1	known	missense	c.79	p.N27H	0.000	NULL	NULL	-	no_errors	CD52	HGNC	ENSG00000169442				98	0	0	41	25	37.8788
AIM1L	0	genome.wustl.edu	37	1	26655305	26655305	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26655305	26655305	G	A	SNP	AIM1L	ENST00000527815	human	ensembl	74_37	-1	known	silent	c.1752	p.I584	0.037	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092				180	0	0	78	37	32.1739
ZNF683	0	genome.wustl.edu	37	1	26691442	26691442	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	26691442	26691442	G	T	SNP	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	missense	c.595	p.L199I	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083				77	0	0	16	11	40.7407
ARID1A	0	genome.wustl.edu	37	1	27094302	27094302	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27094302	27094302	A	G	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.3010	p.T1004A	1.000	superfamily_ARID/BRIGHT_DNA-bd	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				93	0	0	35	24	40.678
ARID1A	0	genome.wustl.edu	37	1	27097788	27097788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27097788	27097788	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	missense	c.3377	p.S1126F	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				79	0	0	39	7	15.2174
PIGV	0	genome.wustl.edu	37	1	27121613	27121613	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27121613	27121613	A	C	SNP	PIGV	ENST00000078527	human	ensembl	74_37	+1	known	missense	c.1088	p.N363T	0.000	pfam_GPI_Mannosyltransferase_2	pfam_GPI_Mannosyltransferase_2	-	no_errors	PIGV	HGNC	ENSG00000060642				206	1	0.483092	94	66	41.25
GPATCH3	0	genome.wustl.edu	37	1	27217691	27217691	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27217691	27217691	A	C	SNP	GPATCH3	ENST00000361720	human	ensembl	74_37	-1	known	missense	c.1388	p.F463C	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH3	HGNC	ENSG00000198746				56	0	0	31	16	34.0426
MAP3K6	0	genome.wustl.edu	37	1	27688646	27688646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27688646	27688646	C	T	SNP	MAP3K6	ENST00000357582	human	ensembl	74_37	-1	known	missense	c.1351	p.A451T	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K6	HGNC	ENSG00000142733				72	0	0	27	16	37.2093
FCN3	0	genome.wustl.edu	37	1	27697428	27697428	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27697428	27697428	G	T	SNP	FCN3	ENST00000270879	human	ensembl	74_37	-1	known	missense	c.429	p.F143L	0.989	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Collagen,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FCN3	HGNC	ENSG00000142748				122	0	0	58	25	30.1205
WASF2	0	genome.wustl.edu	37	1	27745548	27745548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27745548	27745548	C	T	SNP	WASF2	ENST00000430629	human	ensembl	74_37	-1	known	missense	c.172	p.A58T	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF2	HGNC	ENSG00000158195				129	0	0	63	48	43.2432
AHDC1	0	genome.wustl.edu	37	1	27876445	27876445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27876445	27876445	G	A	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	missense	c.2182	p.R728W	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				67	0	0	32	20	38.4615
FGR	0	genome.wustl.edu	37	1	27939476	27939476	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	27939476	27939476	C	A	SNP	FGR	ENST00000374003	human	ensembl	74_37	-1	known	missense	c.1539	p.E513D	1.000	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FGR	HGNC	ENSG00000000938				67	0	0	29	17	36.9565
EYA3	0	genome.wustl.edu	37	1	28319925	28319925	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	28319925	28319925	T	G	SNP	EYA3	ENST00000373871	human	ensembl	74_37	-1	known	missense	c.1289	p.K430T	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA3	HGNC	ENSG00000158161				188	0	0	110	43	28.1046
SNHG12	0	genome.wustl.edu	37	1	28905055	28905055	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	28905055	28905055	T	G	SNP	SNHG12	ENST00000475441	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG12	HGNC	ENSG00000197989				27	0	0	10	10	50
SNHG12	0	genome.wustl.edu	37	1	28906436	28906436	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	28906436	28906436	C	T	SNP	SNHG12	ENST00000488745	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	SNHG12	HGNC	ENSG00000197989				63	0	0	27	17	38.6364
GMEB1	0	genome.wustl.edu	37	1	29041386	29041386	+	RNA	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	29041386	29041386	A	T	SNP	GMEB1	ENST00000480454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.252	-	-	-	no_errors	GMEB1	HGNC	ENSG00000162419				13	0	0	7	2	22.2222
PTPRU	0	genome.wustl.edu	37	1	29605969	29605969	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	29605969	29605969	T	C	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.1565	p.I522T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				135	0	0	47	35	42.6829
MATN1	0	genome.wustl.edu	37	1	31191761	31191761	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	31191761	31191761	T	C	SNP	MATN1	ENST00000373765	human	ensembl	74_37	-1	known	missense	c.485	p.Q162R	0.985	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Matrilin_coiled-coil_trimer,pfam_EGF-like_Ca-bd_dom,smart_VWF_A,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_VWF_A	-	no_errors	MATN1	HGNC	ENSG00000162510				17	0	0	5	4	44.4444
PUM1	0	genome.wustl.edu	37	1	31532388	31532388	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	31532388	31532388	C	A	SNP	PUM1	ENST00000426105	human	ensembl	74_37	-1	known	missense	c.26	p.R9I	1.000	NULL	pfam_Pumilio_RNA-bd_rpt,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	PUM1	HGNC	ENSG00000134644				134	0	0	61	38	38.3838
COL16A1	0	genome.wustl.edu	37	1	32145658	32145658	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	32145658	32145658	G	T	SNP	COL16A1	ENST00000271069	human	ensembl	74_37	-1	known	silent	c.2652	p.I884	0.964	NULL	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL16A1	HGNC	ENSG00000084636				45	0	0	29	5	14.7059
BAI2	0	genome.wustl.edu	37	1	32206090	32206090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	32206090	32206090	G	A	SNP	BAI2	ENST00000373658	human	ensembl	74_37	-1	known	missense	c.1847	p.S616L	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI2	HGNC	ENSG00000121753				35	0	0	16	10	38.4615
SPOCD1	0	genome.wustl.edu	37	1	32280649	32280649	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	32280649	32280649	G	A	SNP	SPOCD1	ENST00000360482	human	ensembl	74_37	-1	known	silent	c.286	p.L96	0.002	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,superfamily_TFIIS_cen_dom,smart_TFS2M	-	no_errors	SPOCD1	HGNC	ENSG00000134668				110	0	0	36	22	37.931
KPNA6	0	genome.wustl.edu	37	1	32636370	32636370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	32636370	32636370	G	A	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	missense	c.1501	p.D501N	1.000	superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				157	0	0	84	37	30.5785
FAM167B	0	genome.wustl.edu	37	1	32713241	32713241	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	32713241	32713241	C	T	SNP	FAM167B	ENST00000373582	human	ensembl	74_37	+1	known	silent	c.219	p.F73	0.177	NULL	pfam_FAM167	-	no_errors	FAM167B	HGNC	ENSG00000183615				129	0	0	53	24	31.1688
ZBTB8A	0	genome.wustl.edu	37	1	33059046	33059046	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33059046	33059046	A	G	SNP	ZBTB8A	ENST00000373510	human	ensembl	74_37	+1	known	missense	c.514	p.T172A	0.502	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB8A	HGNC	ENSG00000160062				104	0	0	52	35	40.2299
ZBTB8A	0	genome.wustl.edu	37	1	33066006	33066006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33066006	33066006	C	T	SNP	ZBTB8A	ENST00000373510	human	ensembl	74_37	+1	known	missense	c.1312	p.P438S	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,pfam_DUF3342,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB8A	HGNC	ENSG00000160062				101	0	0	56	14	20
ZBTB8OS	0	genome.wustl.edu	37	1	33087386	33087386	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33087386	33087386	T	G	SNP	ZBTB8OS	ENST00000373506	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.094	-	-	-	no_errors	ZBTB8OS	HGNC	ENSG00000176261				17	0	0	15	10	40
PRDM16	0	genome.wustl.edu	37	1	3319387	3319387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	3319387	3319387	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.709	p.E237K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				113	0	0	41	19	31.6667
YARS	0	genome.wustl.edu	37	1	33248064	33248064	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33248064	33248064	A	C	SNP	YARS	ENST00000373477	human	ensembl	74_37	-1	known	missense	c.983	p.F328C	1.000	NULL	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold,prints_Tyr-tRNA-ligase,pfscan_tRNA-bd_dom,tigrfam_Tyr-tRNA-ligase	-	no_errors	YARS	HGNC	ENSG00000134684				157	0	0	76	37	32.7434
PRDM16	0	genome.wustl.edu	37	1	3328013	3328013	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	3328013	3328013	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.1252	p.D418N	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				91	0	0	45	28	38.3562
S100PBP	0	genome.wustl.edu	37	1	33321706	33321706	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33321706	33321706	C	A	SNP	S100PBP	ENST00000527692	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.875	-	-	-	no_errors	S100PBP	HGNC	ENSG00000116497				21	0	0	13	6	31.5789
FNDC5	0	genome.wustl.edu	37	1	33330326	33330326	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33330326	33330326	G	T	SNP	FNDC5	ENST00000609187	human	ensembl	74_37	-1	known	missense	c.347	p.T116N	1.000	NULL	superfamily_Fibronectin_type3	-	no_errors	FNDC5	HGNC	ENSG00000160097				105	0	0	38	21	35.5932
ZSCAN20	0	genome.wustl.edu	37	1	33960823	33960823	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	33960823	33960823	A	C	SNP	ZSCAN20	ENST00000361328	human	ensembl	74_37	+1	known	missense	c.2879	p.K960T	0.038	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_SANT/Myb,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN20	HGNC	ENSG00000121903				91	0	0	60	23	27.7108
CSMD2	0	genome.wustl.edu	37	1	34037145	34037145	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	34037145	34037145	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.7944	p.T2648	0.916	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				81	0	0	49	24	32.8767
CSMD2	0	genome.wustl.edu	37	1	34066314	34066314	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	34066314	34066314	T	C	SNP	CSMD2	ENST00000489419	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CSMD2	HGNC	ENSG00000121904				16	0	0	9	5	35.7143
MEGF6	0	genome.wustl.edu	37	1	3428235	3428235	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	3428235	3428235	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.993	p.I331	0.081	NULL	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				98	0	0	44	19	30.1587
GJA4	0	genome.wustl.edu	37	1	35259868	35259868	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35259868	35259868	G	A	SNP	GJA4	ENST00000342280	human	ensembl	74_37	+1	known	silent	c.54	p.S18	0.115	pfam_Connexin_N	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin37	-	no_errors	GJA4	HGNC	ENSG00000187513				91	0	0	34	23	40.3509
DLGAP3	0	genome.wustl.edu	37	1	35370086	35370086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35370086	35370086	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.899	p.S300N	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				153	0	0	71	34	32.381
ZMYM6	0	genome.wustl.edu	37	1	35452862	35452862	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35452862	35452862	A	C	SNP	ZMYM6	ENST00000357182	human	ensembl	74_37	-1	known	missense	c.3821	p.F1274C	0.079	superfamily_RNaseH-like_dom	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				88	0	0	55	31	36.0465
ZMYM6	0	genome.wustl.edu	37	1	35480485	35480485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35480485	35480485	C	T	SNP	ZMYM6	ENST00000357182	human	ensembl	74_37	-1	known	missense	c.608	p.R203Q	1.000	smart_TRASH_dom	pfam_Znf_MYM,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				67	0	0	47	16	25.3968
ZMYM6	0	genome.wustl.edu	37	1	35484869	35484869	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35484869	35484869	T	G	SNP	ZMYM6	ENST00000317538	human	ensembl	74_37	-1	novel	nonstop	c.513	p.*171Y	0.000	NULL	pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM6	HGNC	ENSG00000163867				41	0	0	22	13	37.1429
ZMYM1	0	genome.wustl.edu	37	1	35579062	35579062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35579062	35579062	C	T	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	missense	c.1631	p.S544L	0.925	NULL	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056				155	0	0	126	43	25.4438
ZMYM1	0	genome.wustl.edu	37	1	35580514	35580514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35580514	35580514	G	A	SNP	ZMYM1	ENST00000359858	human	ensembl	74_37	+1	novel	missense	c.3083	p.R1028K	0.997	superfamily_RNaseH-like_dom	pfam_Znf_MYM,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_TRASH_dom	-	no_errors	ZMYM1	HGNC	ENSG00000197056				151	0	0	81	38	31.9328
ZMYM4	0	genome.wustl.edu	37	1	35852607	35852607	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35852607	35852607	T	G	SNP	ZMYM4	ENST00000314607	human	ensembl	74_37	+1	known	missense	c.1840	p.L614V	1.000	smart_TRASH_dom	pfam_DUF3504,pfam_Znf_MYM,smart_TRASH_dom	-	no_errors	ZMYM4	HGNC	ENSG00000146463				42	0	0	25	9	26.4706
KIAA0319L	0	genome.wustl.edu	37	1	35925982	35925982	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	35925982	35925982	G	C	SNP	KIAA0319L	ENST00000325722	human	ensembl	74_37	-1	known	missense	c.1351	p.L451V	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319L	HGNC	ENSG00000142687				138	0	0	81	37	31.3559
AGO4	0	genome.wustl.edu	37	1	36301555	36301555	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36301555	36301555	A	G	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.1685	p.K562R	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				125	0	0	87	35	28.6885
AGO3	0	genome.wustl.edu	37	1	36499775	36499775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36499775	36499775	C	T	SNP	AGO3	ENST00000373191	human	ensembl	74_37	+1	known	missense	c.1592	p.A531V	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO3	HGNC	ENSG00000126070				27	0	0	25	7	21.875
TRAPPC3	0	genome.wustl.edu	37	1	36602647	36602647	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36602647	36602647	G	A	SNP	TRAPPC3	ENST00000462715	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.168	-	-	-	no_errors	TRAPPC3	HGNC	ENSG00000054116				31	0	0	16	8	33.3333
THRAP3	0	genome.wustl.edu	37	1	36754728	36754728	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36754728	36754728	G	T	SNP	THRAP3	ENST00000354618	human	ensembl	74_37	+1	known	nonsense	c.1108	p.E370*	1.000	NULL	NULL	-	no_errors	THRAP3	HGNC	ENSG00000054118				71	0	0	47	20	29.8507
MRPS15	0	genome.wustl.edu	37	1	36922119	36922119	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36922119	36922119	A	G	SNP	MRPS15	ENST00000477040	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MRPS15	HGNC	ENSG00000116898				11	0	0	3	4	57.1429
MRPS15	0	genome.wustl.edu	37	1	36926331	36926331	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	36926331	36926331	A	C	SNP	MRPS15	ENST00000373116	human	ensembl	74_37	-1	known	missense	c.347	p.V116G	0.000	pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	-	no_errors	MRPS15	HGNC	ENSG00000116898				92	0	0	43	22	33.8462
GRIK3	0	genome.wustl.edu	37	1	37319226	37319226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	37319226	37319226	C	T	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.1202	p.G401D	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				76	0	0	34	22	39.2857
GRIK3	0	genome.wustl.edu	37	1	37337828	37337828	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	37337828	37337828	G	A	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	silent	c.693	p.F231	0.993	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873				66	0	0	26	13	33.3333
C1orf109	0	genome.wustl.edu	37	1	38148886	38148886	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	38148886	38148886	A	G	SNP	C1orf109	ENST00000609516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922				249	0	0	113	68	37.5691
CDCA8	0	genome.wustl.edu	37	1	38172656	38172656	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	38172656	38172656	C	T	SNP	CDCA8	ENST00000327331	human	ensembl	74_37	+1	known	nonsense	c.718	p.R240*	1.000	pfam_Cell_div_borealin	pfam_Cell_div_borealin,pfam_Borealin-like_N	-	no_errors	CDCA8	HGNC	ENSG00000134690				211	1	0.471698	88	31	26.0504
RRAGC	0	genome.wustl.edu	37	1	39305238	39305238	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39305238	39305238	C	T	SNP	RRAGC	ENST00000373001	human	ensembl	74_37	-1	known	missense	c.1187	p.R396Q	0.888	NULL	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RRAGC	HGNC	ENSG00000116954				74	0	0	41	22	34.9206
GJA9	0	genome.wustl.edu	37	1	39341360	39341360	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39341360	39341360	A	G	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	silent	c.411	p.C137	0.186	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233				220	0	0	114	56	32.9412
ENSG00000228436	0	genome.wustl.edu	37	1	39341827	39341827	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39341827	39341827	T	G	SNP	ENSG00000228436	ENST00000443161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP5-864K19.4	Clone_based_vega_gene	ENSG00000228436				96	0	0	60	15	20
RHBDL2	0	genome.wustl.edu	37	1	39358897	39358897	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39358897	39358897	C	A	SNP	RHBDL2	ENST00000372985	human	ensembl	74_37	-1	known	splice_site	c.850-1	e6-1	1.000	-	-	-	no_errors	RHBDL2	HGNC	ENSG00000158315				32	0	0	21	12	36.3636
MACF1	0	genome.wustl.edu	37	1	39749819	39749819	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39749819	39749819	T	C	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.1012	p.S338P	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				103	0	0	52	21	28.7671
MACF1	0	genome.wustl.edu	37	1	39757662	39757662	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39757662	39757662	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	silent	c.1881	p.T627	0.896	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				88	0	0	42	20	32.2581
MACF1	0	genome.wustl.edu	37	1	39775246	39775246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39775246	39775246	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.2809	p.E937K	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				102	0	0	66	34	34
MACF1	0	genome.wustl.edu	37	1	39785358	39785358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39785358	39785358	G	A	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	missense	c.3983	p.R1328K	1.000	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				82	0	0	46	22	32.3529
MACF1	0	genome.wustl.edu	37	1	39797149	39797149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39797149	39797149	G	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.5000	p.G1667D	0.000	superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				153	0	0	88	41	31.7829
MACF1	0	genome.wustl.edu	37	1	39797279	39797279	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39797279	39797279	A	C	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.5130	p.E1710D	0.433	pfam_Plectin_repeat,superfamily_RNaseH-like_dom,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				155	0	0	109	46	29.6774
MACF1	0	genome.wustl.edu	37	1	39801293	39801293	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39801293	39801293	C	A	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	silent	c.9144	p.S3048	0.000	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				103	0	0	59	28	32.1839
MACF1	0	genome.wustl.edu	37	1	39802891	39802891	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39802891	39802891	A	G	SNP	MACF1	ENST00000567887	human	ensembl	74_37	+1	putative	missense	c.10214	p.E3405G	1.000	superfamily_RNaseH-like_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				184	0	0	119	50	29.5858
MACF1	0	genome.wustl.edu	37	1	39907927	39907927	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39907927	39907927	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	nonsense	c.12706	p.R4236*	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				90	0	0	44	22	33.3333
MACF1	0	genome.wustl.edu	37	1	39910339	39910339	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	39910339	39910339	C	T	SNP	MACF1	ENST00000317713	human	ensembl	74_37	+1	known	silent	c.13260	p.L4420	0.753	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	MACF1	HGNC	ENSG00000127603				78	0	0	47	14	22.9508
NT5C1A	0	genome.wustl.edu	37	1	40124988	40124988	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40124988	40124988	A	G	SNP	NT5C1A	ENST00000235628	human	ensembl	74_37	-1	known	silent	c.912	p.D304	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981				201	0	0	69	35	33.6538
NT5C1A	0	genome.wustl.edu	37	1	40131295	40131295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40131295	40131295	G	A	SNP	NT5C1A	ENST00000235628	human	ensembl	74_37	-1	known	missense	c.331	p.R111W	1.000	pfam_5-nucleotidase	pfam_5-nucleotidase	-	no_errors	NT5C1A	HGNC	ENSG00000116981				127	0	0	35	29	45.3125
CAP1	0	genome.wustl.edu	37	1	40537207	40537207	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40537207	40537207	C	T	SNP	CAP1	ENST00000461993	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	CAP1	HGNC	ENSG00000131236				39	0	0	18	7	28
RLF	0	genome.wustl.edu	37	1	40701665	40701665	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40701665	40701665	G	T	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	nonsense	c.1291	p.E431*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				128	0	0	83	46	35.6589
RLF	0	genome.wustl.edu	37	1	40705137	40705137	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40705137	40705137	T	G	SNP	RLF	ENST00000372771	human	ensembl	74_37	+1	known	missense	c.4763	p.L1588R	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RLF	HGNC	ENSG00000117000				105	0	0	56	32	36.3636
ZMPSTE24	0	genome.wustl.edu	37	1	40758159	40758159	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40758159	40758159	T	G	SNP	ZMPSTE24	ENST00000372759	human	ensembl	74_37	+1	known	missense	c.1246	p.F416V	1.000	pfam_Peptidase_M48	pfam_Peptidase_M48	-	no_errors	ZMPSTE24	HGNC	ENSG00000084073				153	1	0.649351	82	47	36.4341
ZFP69B	0	genome.wustl.edu	37	1	40922718	40922718	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	40922718	40922718	G	T	SNP	ZFP69B	ENST00000484445	human	ensembl	74_37	+1	putative	nonsense	c.229	p.E77*	1.000	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZFP69B	HGNC	ENSG00000187801				67	0	0	42	8	16
CTPS1	0	genome.wustl.edu	37	1	41475885	41475885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	41475885	41475885	G	A	SNP	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	missense	c.1744	p.E582K	0.961	NULL	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS1	HGNC	ENSG00000171793				88	0	0	51	23	31.0811
EDN2	0	genome.wustl.edu	37	1	41949772	41949772	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	41949772	41949772	T	C	SNP	EDN2	ENST00000372587	human	ensembl	74_37	-1	known	missense	c.167	p.D56G	1.000	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	pfam_Endothln-like_toxin,smart_Endothln-like_toxin,prints_Bibrotoxin/Sarafotoxin-D	-	no_errors	EDN2	HGNC	ENSG00000127129				54	0	0	18	9	33.3333
HIVEP3	0	genome.wustl.edu	37	1	42049380	42049380	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	42049380	42049380	C	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	missense	c.1089	p.K363N	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				167	0	0	58	31	34.8315
RIMKLA	0	genome.wustl.edu	37	1	42880351	42880351	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	42880351	42880351	C	A	SNP	RIMKLA	ENST00000431473	human	ensembl	74_37	+1	known	silent	c.882	p.I294	1.000	pfam_ATP-grasp_RimK-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	pfam_ATP-grasp_RimK-type,pfam_GSHS_ATP-bd,pfam_ATP-grasp_DUF201-type,pfscan_ATP-grasp,tigrfam_RpS6_RimK/Lys_biosynth_LsyX	-	no_errors	RIMKLA	HGNC	ENSG00000177181				260	0	0	117	69	37.0968
ZMYND12	0	genome.wustl.edu	37	1	42914271	42914271	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	42914271	42914271	T	G	SNP	ZMYND12	ENST00000372565	human	ensembl	74_37	-1	known	missense	c.291	p.K97N	0.992	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	ZMYND12	HGNC	ENSG00000066185				106	0	0	45	22	32.8358
CCDC30	0	genome.wustl.edu	37	1	43011180	43011180	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	43011180	43011180	G	T	SNP	CCDC30	ENST00000340612	human	ensembl	74_37	+1	known	missense	c.355	p.D119Y	1.000	NULL	NULL	-	no_errors	CCDC30	HGNC	ENSG00000186409				91	0	0	56	26	31.7073
SLC2A1	0	genome.wustl.edu	37	1	43396474	43396474	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	43396474	43396474	C	T	SNP	SLC2A1	ENST00000426263	human	ensembl	74_37	-1	known	silent	c.339	p.S113	0.091	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,prints_Glu_transpt_1,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A1	HGNC	ENSG00000117394				63	0	0	22	10	31.25
WDR65	0	genome.wustl.edu	37	1	43647389	43647389	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	43647389	43647389	T	G	SNP	WDR65	ENST00000528956	human	ensembl	74_37	+1	known	silent	c.342	p.A114	0.993	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR65	HGNC	ENSG00000243710				156	0	0	109	35	24.3056
TIE1	0	genome.wustl.edu	37	1	43775110	43775110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	43775110	43775110	C	T	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.1240	p.P414S	1.000	smart_Ig_sub	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056				92	0	0	29	21	42
SZT2	0	genome.wustl.edu	37	1	43908278	43908278	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	43908278	43908278	C	T	SNP	SZT2	ENST00000562955	human	ensembl	74_37	+1	known	nonsense	c.7969	p.R2657*	1.000	NULL	NULL	-	no_errors	SZT2	HGNC	ENSG00000198198				197	1	0.505051	85	52	37.9562
KDM4A	0	genome.wustl.edu	37	1	44156616	44156616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	44156616	44156616	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	missense	c.2138	p.S713L	0.677	smart_Znf_PHD	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135				480	2	0.414938	255	103	28.7709
SLC6A9	0	genome.wustl.edu	37	1	44463386	44463386	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	44463386	44463386	C	A	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.1952	p.S651I	1.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				255	0	0	99	52	34.4371
TMEM53	0	genome.wustl.edu	37	1	45120404	45120404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	45120404	45120404	C	T	SNP	TMEM53	ENST00000372237	human	ensembl	74_37	-1	known	missense	c.661	p.E221K	0.653	pfam_DUF829_TMEM53	pfam_DUF829_TMEM53	-	no_errors	TMEM53	HGNC	ENSG00000126106				166	0	0	73	43	37.069
PTCH2	0	genome.wustl.edu	37	1	45292046	45292046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	45292046	45292046	G	A	SNP	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	missense	c.2990	p.A997V	0.999	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425				106	0	0	66	27	29.0323
PRDX1	0	genome.wustl.edu	37	1	45977024	45977024	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	45977024	45977024	C	A	SNP	PRDX1	ENST00000262746	human	ensembl	74_37	-1	known	nonsense	c.577	p.E193*	1.000	pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX1	HGNC	ENSG00000117450				384	0	0	234	91	28
NASP	0	genome.wustl.edu	37	1	46073549	46073549	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	46073549	46073549	A	C	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.972	p.E324D	0.143	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				79	0	0	64	21	24.7059
MAST2	0	genome.wustl.edu	37	1	46496777	46496777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	46496777	46496777	C	T	SNP	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	missense	c.2807	p.A936V	0.994	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				58	0	0	22	13	37.1429
PIK3R3	0	genome.wustl.edu	37	1	46521530	46521530	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	46521530	46521530	T	G	SNP	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	missense	c.1016	p.K339T	1.000	prints_PI3kinase_P85	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				114	0	0	69	44	38.9381
PIK3R3	0	genome.wustl.edu	37	1	46531771	46531771	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	46531771	46531771	A	G	SNP	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	silent	c.714	p.S238	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				91	0	0	80	36	31.0345
MKNK1	0	genome.wustl.edu	37	1	47027233	47027233	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47027233	47027233	C	A	SNP	MKNK1	ENST00000371946	human	ensembl	74_37	-1	known	missense	c.1045	p.D349Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277				121	0	0	45	21	31.8182
CYP4B1	0	genome.wustl.edu	37	1	47283819	47283819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47283819	47283819	G	A	SNP	CYP4B1	ENST00000371923	human	ensembl	74_37	+1	known	missense	c.1289	p.R430H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973				152	0	0	77	30	28.0374
CYP4B1	0	genome.wustl.edu	37	1	47284422	47284422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47284422	47284422	T	C	SNP	CYP4B1	ENST00000371923	human	ensembl	74_37	+1	known	missense	c.1475	p.V492A	0.994	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973				166	0	0	82	46	35.9375
CYP4Z1	0	genome.wustl.edu	37	1	47564769	47564769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47564769	47564769	G	A	SNP	CYP4Z1	ENST00000334194	human	ensembl	74_37	+1	known	missense	c.880	p.E294K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				163	0	0	84	51	37.7778
CYP4Z1	0	genome.wustl.edu	37	1	47583620	47583620	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47583620	47583620	C	T	SNP	CYP4Z1	ENST00000471598	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	CYP4Z1	HGNC	ENSG00000186160				39	0	0	25	5	16.6667
STIL	0	genome.wustl.edu	37	1	47735473	47735473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47735473	47735473	C	T	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	missense	c.2449	p.D817N	1.000	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				145	0	0	88	28	24.1379
STIL	0	genome.wustl.edu	37	1	47746069	47746069	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47746069	47746069	T	C	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	silent	c.2061	p.R687	0.053	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				218	0	0	102	65	38.9222
STIL	0	genome.wustl.edu	37	1	47767944	47767944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	47767944	47767944	G	A	SNP	STIL	ENST00000371877	human	ensembl	74_37	-1	known	missense	c.227	p.S76L	0.001	NULL	NULL	-	no_errors	STIL	HGNC	ENSG00000123473				74	0	0	41	29	41.4286
SPATA6	0	genome.wustl.edu	37	1	48821347	48821347	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	48821347	48821347	A	C	SNP	SPATA6	ENST00000371847	human	ensembl	74_37	-1	known	missense	c.1189	p.L397V	0.991	NULL	NULL	-	no_errors	SPATA6	HGNC	ENSG00000132122				67	0	0	46	20	30.303
SPATA6	0	genome.wustl.edu	37	1	48864948	48864948	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	48864948	48864948	G	T	SNP	SPATA6	ENST00000463938	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.362	-	-	-	no_errors	SPATA6	HGNC	ENSG00000132122				25	0	0	17	15	46.875
AGBL4	0	genome.wustl.edu	37	1	49100248	49100248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	49100248	49100248	G	A	SNP	AGBL4	ENST00000371839	human	ensembl	74_37	-1	known	missense	c.868	p.R290C	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094				19	0	0	16	6	27.2727
EPS15	0	genome.wustl.edu	37	1	51826915	51826915	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	51826915	51826915	A	G	SNP	EPS15	ENST00000371733	human	ensembl	74_37	-1	known	silent	c.2472	p.C824	0.192	NULL	smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15	HGNC	ENSG00000085832				112	0	0	73	43	37.069
OSBPL9	0	genome.wustl.edu	37	1	52253122	52253122	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52253122	52253122	C	T	SNP	OSBPL9	ENST00000371710	human	ensembl	74_37	+1	known	nonsense	c.2152	p.R718*	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL9	HGNC	ENSG00000117859				168	0	0	97	46	32.1678
NRD1	0	genome.wustl.edu	37	1	52263977	52263977	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52263977	52263977	C	A	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	nonsense	c.2752	p.E918*	0.999	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618				108	0	0	57	24	29.6296
NRD1	0	genome.wustl.edu	37	1	52272492	52272492	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52272492	52272492	T	G	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	missense	c.2288	p.K763T	1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618				135	0	0	94	55	36.9128
KTI12	0	genome.wustl.edu	37	1	52498747	52498747	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52498747	52498747	T	G	SNP	KTI12	ENST00000371614	human	ensembl	74_37	-1	known	missense	c.687	p.L229F	0.994	pfam_Chromatin_KTI12	pfam_Chromatin_KTI12,superfamily_P-loop_NTPase	-	no_errors	KTI12	HGNC	ENSG00000198841				147	0	0	86	28	24.5614
ZFYVE9	0	genome.wustl.edu	37	1	52703746	52703746	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52703746	52703746	G	A	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	silent	c.657	p.P219	0.042	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077				157	0	0	88	43	32.8244
CC2D1B	0	genome.wustl.edu	37	1	52822738	52822738	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52822738	52822738	G	A	SNP	CC2D1B	ENST00000371586	human	ensembl	74_37	-1	known	nonsense	c.1831	p.R611*	0.997	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1B	HGNC	ENSG00000154222				27	0	0	12	7	36.8421
ZCCHC11	0	genome.wustl.edu	37	1	52981601	52981601	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	52981601	52981601	C	A	SNP	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	nonsense	c.844	p.E282*	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744				135	0	0	86	41	32.2835
SCP2	0	genome.wustl.edu	37	1	53443987	53443987	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	53443987	53443987	A	C	SNP	SCP2	ENST00000371514	human	ensembl	74_37	+1	known	missense	c.773	p.E258A	1.000	NULL	pfam_SCP2_sterol-bd_dom,pfam_Thiolase_C,pfam_Thiolase_N,superfamily_Thiolase-like,superfamily_SCP2_sterol-bd_dom	-	no_errors	SCP2	HGNC	ENSG00000116171				75	0	0	42	21	33.3333
GLIS1	0	genome.wustl.edu	37	1	54060472	54060472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	54060472	54060472	G	A	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	missense	c.104	p.A35V	0.221	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332				29	0	0	13	7	35
MROH7-TTC4	0	genome.wustl.edu	37	1	55167779	55167779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	55167779	55167779	G	A	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.3302	p.R1101H	0.973	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723				34	0	0	19	3	13.6364
USP24	0	genome.wustl.edu	37	1	55624658	55624658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	55624658	55624658	G	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.784	p.R262C	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				20	0	0	8	9	52.9412
PRKAA2	0	genome.wustl.edu	37	1	57169927	57169927	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	57169927	57169927	C	T	SNP	PRKAA2	ENST00000371244	human	ensembl	74_37	+1	known	missense	c.1072	p.H358Y	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409				129	0	0	56	38	40.4255
C1orf168	0	genome.wustl.edu	37	1	57192242	57192242	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	57192242	57192242	A	G	SNP	C1orf168	ENST00000343433	human	ensembl	74_37	-1	known	missense	c.1808	p.L603P	0.097	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889				92	0	0	64	28	30.4348
DAB1	0	genome.wustl.edu	37	1	57481012	57481012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	57481012	57481012	C	T	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.1087	p.A363T	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				119	0	0	55	20	26.6667
MYSM1	0	genome.wustl.edu	37	1	59125684	59125684	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	59125684	59125684	C	A	SNP	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	missense	c.2472	p.K824N	0.000	NULL	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				48	0	0	45	16	26.2295
MYSM1	0	genome.wustl.edu	37	1	59154730	59154730	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	59154730	59154730	C	A	SNP	MYSM1	ENST00000472487	human	ensembl	74_37	-1	known	nonsense	c.379	p.E127*	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SWIRM,pfam_JAB_MPN_dom,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,smart_JAB_MPN_dom,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	MYSM1	HGNC	ENSG00000162601				51	0	0	27	12	30.7692
INADL	0	genome.wustl.edu	37	1	62367109	62367109	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62367109	62367109	A	C	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.3359	p.K1120T	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				98	0	0	46	27	36.9863
RPL22	0	genome.wustl.edu	37	1	6246758	6246758	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6246758	6246758	C	T	SNP	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	missense	c.361	p.E121K	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				44	0	0	20	14	41.1765
INADL	0	genome.wustl.edu	37	1	62586964	62586964	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62586964	62586964	T	G	SNP	INADL	ENST00000371158	human	ensembl	74_37	+1	known	missense	c.5002	p.S1668A	0.000	superfamily_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_L27,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	INADL	HGNC	ENSG00000132849				87	0	0	50	23	31.5068
INADL	0	genome.wustl.edu	37	1	62593793	62593793	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62593793	62593793	T	G	SNP	INADL	ENST00000472512	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	INADL	HGNC	ENSG00000132849				59	0	0	38	25	39.6825
RNF207	0	genome.wustl.edu	37	1	6272055	6272055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6272055	6272055	C	T	SNP	RNF207	ENST00000377939	human	ensembl	74_37	+1	novel	missense	c.1238	p.A413V	0.995	NULL	pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	RNF207	HGNC	ENSG00000158286				17	0	0	9	2	18.1818
USP1	0	genome.wustl.edu	37	1	62910637	62910637	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62910637	62910637	G	T	SNP	USP1	ENST00000339950	human	ensembl	74_37	+1	known	missense	c.786	p.E262D	0.109	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP1	HGNC	ENSG00000162607				83	0	0	65	24	26.9663
USP1	0	genome.wustl.edu	37	1	62910879	62910879	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62910879	62910879	A	C	SNP	USP1	ENST00000339950	human	ensembl	74_37	+1	known	missense	c.1028	p.K343T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP1	HGNC	ENSG00000162607				71	0	0	42	27	39.1304
DOCK7	0	genome.wustl.edu	37	1	62979530	62979530	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	62979530	62979530	G	A	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	nonsense	c.3976	p.R1326*	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				151	0	0	109	47	30.1282
DOCK7	0	genome.wustl.edu	37	1	63024812	63024812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	63024812	63024812	C	T	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.2279	p.R760Q	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				64	0	0	41	10	19.6078
ATG4C	0	genome.wustl.edu	37	1	63269479	63269479	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	63269479	63269479	G	T	SNP	ATG4C	ENST00000317868	human	ensembl	74_37	+1	known	nonsense	c.22	p.E8*	1.000	NULL	pfam_Peptidase_C54	-	no_errors	ATG4C	HGNC	ENSG00000125703				71	0	0	39	28	41.791
ATG4C	0	genome.wustl.edu	37	1	63282366	63282366	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	63282366	63282366	A	C	SNP	ATG4C	ENST00000317868	human	ensembl	74_37	+1	known	missense	c.281	p.E94A	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4C	HGNC	ENSG00000125703				54	0	0	51	22	30.137
ALG6	0	genome.wustl.edu	37	1	63872011	63872011	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	63872011	63872011	T	C	SNP	ALG6	ENST00000371108	human	ensembl	74_37	+1	known	missense	c.370	p.Y124H	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035				85	0	0	68	27	28.4211
CACHD1	0	genome.wustl.edu	37	1	65016280	65016280	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	65016280	65016280	A	G	SNP	CACHD1	ENST00000371073	human	ensembl	74_37	+1	known	missense	c.202	p.I68V	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfscan_VWF_A	-	no_errors	CACHD1	HGNC	ENSG00000158966				50	0	0	29	17	36.9565
JAK1	0	genome.wustl.edu	37	1	65305188	65305188	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	65305188	65305188	G	A	SNP	JAK1	ENST00000481702	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	JAK1	HGNC	ENSG00000162434				68	0	0	30	15	33.3333
AK4	0	genome.wustl.edu	37	1	65691785	65691785	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	65691785	65691785	G	A	SNP	AK4	ENST00000327299	human	ensembl	74_37	+1	known	silent	c.597	p.T199	0.856	superfamily_P-loop_NTPase,tigrfam_Adenyl_kin_sub	pfam_Adenylate_kin,pfam_Adenylate_kinase_lid-dom,superfamily_P-loop_NTPase,superfamily_Adenylate_kinase_lid-dom,prints_Adenylate_kin,tigrfam_Adenyl_kin_sub	-	no_errors	AK4	HGNC	ENSG00000162433				47	0	0	24	10	29.4118
NOL9	0	genome.wustl.edu	37	1	6586025	6586025	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6586025	6586025	A	G	SNP	NOL9	ENST00000377705	human	ensembl	74_37	-1	known	silent	c.1998	p.D666	0.999	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	NOL9	HGNC	ENSG00000162408				165	0	0	90	25	21.7391
DNAJC6	0	genome.wustl.edu	37	1	65878696	65878696	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	65878696	65878696	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	silent	c.2901	p.K967	1.000	superfamily_DnaJ_domain,pfscan_DnaJ_domain	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				110	0	0	63	59	48.3607
LEPR	0	genome.wustl.edu	37	1	66081710	66081710	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	66081710	66081710	C	A	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	nonsense	c.2015	p.S672*	0.995	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				89	0	0	55	26	32.0988
LEPR	0	genome.wustl.edu	37	1	66081833	66081833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	66081833	66081833	C	T	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	missense	c.2138	p.T713M	0.282	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				95	0	0	54	22	28.9474
LEPR	0	genome.wustl.edu	37	1	66101895	66101895	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	66101895	66101895	T	G	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	missense	c.2695	p.F899V	1.000	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				203	0	0	122	66	35.1064
TAS1R1	0	genome.wustl.edu	37	1	6634952	6634952	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6634952	6634952	G	T	SNP	TAS1R1	ENST00000333172	human	ensembl	74_37	+1	known	nonsense	c.760	p.E254*	0.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	TAS1R1	HGNC	ENSG00000173662				120	0	0	36	37	50.6849
ZBTB48	0	genome.wustl.edu	37	1	6647651	6647651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6647651	6647651	G	A	SNP	ZBTB48	ENST00000466813	human	ensembl	74_37	+1	known	missense	c.113	p.R38Q	0.002	NULL	NULL	-	no_errors	ZBTB48	HGNC	ENSG00000204859				106	0	0	59	15	20.2703
PHF13	0	genome.wustl.edu	37	1	6676920	6676920	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	6676920	6676920	T	C	SNP	PHF13	ENST00000377648	human	ensembl	74_37	+1	known	splice_site	c.141+2	e2+2	1.000	-	-	-	no_errors	PHF13	HGNC	ENSG00000116273				74	0	0	40	10	20
TCTEX1D1	0	genome.wustl.edu	37	1	67243091	67243091	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67243091	67243091	C	A	SNP	TCTEX1D1	ENST00000282670	human	ensembl	74_37	+1	known	missense	c.494	p.S165Y	0.997	pfam_Tctex	pfam_Tctex	-	no_errors	TCTEX1D1	HGNC	ENSG00000152760				124	0	0	76	35	31.5315
WDR78	0	genome.wustl.edu	37	1	67292585	67292585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67292585	67292585	C	T	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	missense	c.2257	p.V753I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				159	0	0	97	58	37.4194
WDR78	0	genome.wustl.edu	37	1	67358960	67358960	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67358960	67358960	C	G	SNP	WDR78	ENST00000371026	human	ensembl	74_37	-1	known	missense	c.482	p.S161T	0.006	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR78	HGNC	ENSG00000152763				139	0	0	74	45	37.8151
C1orf141	0	genome.wustl.edu	37	1	67558934	67558934	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67558934	67558934	C	A	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	missense	c.957	p.Q319H	0.088	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				133	0	0	83	32	27.8261
C1orf141	0	genome.wustl.edu	37	1	67559156	67559156	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67559156	67559156	G	A	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	silent	c.735	p.F245	0.336	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				38	0	0	24	14	36.8421
C1orf141	0	genome.wustl.edu	37	1	67561067	67561067	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67561067	67561067	C	A	SNP	C1orf141	ENST00000371006	human	ensembl	74_37	-1	known	nonsense	c.454	p.E152*	0.679	NULL	NULL	-	no_errors	C1orf141	HGNC	ENSG00000203963				22	0	0	8	6	42.8571
IL23R	0	genome.wustl.edu	37	1	67635287	67635287	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67635287	67635287	G	A	SNP	IL23R	ENST00000347310	human	ensembl	74_37	+1	known	silent	c.333	p.E111	0.997	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL23R	HGNC	ENSG00000162594				109	0	0	70	35	33.3333
IL12RB2	0	genome.wustl.edu	37	1	67786106	67786106	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67786106	67786106	C	T	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	silent	c.55	p.L19	0.037	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				108	0	0	50	36	41.8605
IL12RB2	0	genome.wustl.edu	37	1	67804371	67804371	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67804371	67804371	T	G	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1023	p.I341M	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				86	0	0	50	21	29.5775
IL12RB2	0	genome.wustl.edu	37	1	67816583	67816583	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67816583	67816583	A	C	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1069	p.I357L	0.989	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				96	0	0	56	27	32.5301
IL12RB2	0	genome.wustl.edu	37	1	67852280	67852280	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67852280	67852280	C	A	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1874	p.A625E	0.000	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				212	0	0	119	59	33.1461
SERBP1	0	genome.wustl.edu	37	1	67880971	67880971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67880971	67880971	C	A	SNP	SERBP1	ENST00000370995	human	ensembl	74_37	-1	known	missense	c.1048	p.D350Y	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864				153	0	0	91	47	34.058
SERBP1	0	genome.wustl.edu	37	1	67885969	67885969	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	67885969	67885969	C	A	SNP	SERBP1	ENST00000462814	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SERBP1	HGNC	ENSG00000142864				35	0	0	16	11	40.7407
LRRC7	0	genome.wustl.edu	37	1	70502292	70502292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	70502292	70502292	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.2159	p.S720F	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				161	0	0	76	48	38.7097
LRRC7	0	genome.wustl.edu	37	1	70504011	70504011	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	70504011	70504011	C	T	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.2390	p.S797L	0.980	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				195	0	0	87	58	40
ANKRD13C	0	genome.wustl.edu	37	1	70742520	70742520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	70742520	70742520	C	T	SNP	ANKRD13C	ENST00000370944	human	ensembl	74_37	-1	known	missense	c.1223	p.R408Q	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454				49	0	0	26	18	40.9091
PTGER3	0	genome.wustl.edu	37	1	71513120	71513120	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	71513120	71513120	G	A	SNP	PTGER3	ENST00000354608	human	ensembl	74_37	-1	known	silent	c.141	p.C47	1.000	prints_Prostglndn_EP3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_serpentine_rcpt_Srbc,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP3_rcpt,prints_Prostanoid_rcpt,prints_EP3_rcpt_2,prints_Prostglndn_DP_rcpt,prints_GPCR_Rhodpsn,prints_Thbox_rcpt	-	no_errors	PTGER3	HGNC	ENSG00000050628				28	0	0	13	4	23.5294
FPGT-TNNI3K	0	genome.wustl.edu	37	1	74901807	74901807	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	74901807	74901807	G	T	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	missense	c.2158	p.D720Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				109	0	0	77	29	27.3585
C1orf173	0	genome.wustl.edu	37	1	75038351	75038351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75038351	75038351	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.3043	p.E1015K	0.037	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				176	0	0	103	46	30.8725
C1orf173	0	genome.wustl.edu	37	1	75039081	75039081	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75039081	75039081	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.2313	p.K771N	0.008	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				125	1	0.793651	81	36	30.7692
C1orf173	0	genome.wustl.edu	37	1	75055504	75055504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75055504	75055504	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.1987	p.E663K	0.002	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				154	0	0	91	43	32.0896
C1orf173	0	genome.wustl.edu	37	1	75097446	75097446	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75097446	75097446	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.770	p.R257I	0.984	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				121	0	0	58	30	34.0909
C1orf173	0	genome.wustl.edu	37	1	75097470	75097470	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75097470	75097470	C	A	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.746	p.R249I	0.000	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965				129	0	0	55	26	32.0988
TYW3	0	genome.wustl.edu	37	1	75229792	75229792	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	75229792	75229792	T	G	SNP	TYW3	ENST00000370867	human	ensembl	74_37	+1	known	missense	c.775	p.Y259D	0.410	NULL	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623				91	0	0	54	27	33.3333
ACADM	0	genome.wustl.edu	37	1	76199306	76199306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	76199306	76199306	C	A	SNP	ACADM	ENST00000420607	human	ensembl	74_37	+1	known	missense	c.392	p.S131Y	1.000	pfam_AcylCoA_DH/ox_N,superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADM	HGNC	ENSG00000117054				156	0	0	97	37	27.6119
SNORD45B	0	genome.wustl.edu	37	1	76255178	76255178	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	76255178	76255178	G	A	SNP	SNORD45B	ENST00000364617	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD45B	HGNC	ENSG00000201487				53	0	0	29	11	27.5
MSH4	0	genome.wustl.edu	37	1	76276403	76276403	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	76276403	76276403	T	G	SNP	MSH4	ENST00000263187	human	ensembl	74_37	+1	known	missense	c.610	p.L204V	1.000	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468				39	0	0	35	15	30
ST6GALNAC3	0	genome.wustl.edu	37	1	76878054	76878054	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	76878054	76878054	G	A	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	74_37	+1	known	missense	c.575	p.R192H	1.000	pfam_Glyco_trans_29	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005				90	0	0	53	22	29.3333
CAMTA1	0	genome.wustl.edu	37	1	7725121	7725121	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7725121	7725121	C	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	silent	c.2514	p.G838	0.988	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				196	0	0	71	35	33.0189
ZZZ3	0	genome.wustl.edu	37	1	78041751	78041751	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78041751	78041751	A	G	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	splice_site	c.2331+2	e8+2	1.000	-	-	-	no_errors	ZZZ3	HGNC	ENSG00000036549				115	0	0	88	20	18.5185
CAMTA1	0	genome.wustl.edu	37	1	7806101	7806101	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7806101	7806101	G	T	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	nonsense	c.4567	p.E1523*	1.000	superfamily_P-loop_NTPase	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735				119	0	0	66	30	31.25
ZZZ3	0	genome.wustl.edu	37	1	78098028	78098028	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78098028	78098028	C	T	SNP	ZZZ3	ENST00000370801	human	ensembl	74_37	-1	known	missense	c.1012	p.E338K	0.000	NULL	pfam_SANT/Myb,pfam_Znf_ZZ,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Znf_ZZ,pfscan_Myb-like_dom	-	no_errors	ZZZ3	HGNC	ENSG00000036549				209	0	0	108	56	34.1463
USP33	0	genome.wustl.edu	37	1	78180466	78180466	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78180466	78180466	T	G	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	missense	c.2141	p.K714T	1.000	pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				89	0	0	59	28	32.1839
USP33	0	genome.wustl.edu	37	1	78195593	78195593	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78195593	78195593	A	G	SNP	USP33	ENST00000357428	human	ensembl	74_37	-1	known	silent	c.762	p.F254	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				93	0	0	73	33	31.1321
FAM73A	0	genome.wustl.edu	37	1	78325057	78325057	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78325057	78325057	C	T	SNP	FAM73A	ENST00000370791	human	ensembl	74_37	+1	known	nonsense	c.1174	p.R392*	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73A	HGNC	ENSG00000180488				73	0	0	62	20	24.3902
NEXN	0	genome.wustl.edu	37	1	78408391	78408391	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	78408391	78408391	A	C	SNP	NEXN	ENST00000334785	human	ensembl	74_37	+1	known	missense	c.1905	p.E635D	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NEXN	HGNC	ENSG00000162614				100	0	0	68	33	32.6733
PER3	0	genome.wustl.edu	37	1	7863754	7863754	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7863754	7863754	T	C	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	silent	c.979	p.L327	1.000	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				36	0	0	23	8	25.8065
PER3	0	genome.wustl.edu	37	1	7863904	7863904	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7863904	7863904	C	T	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	nonsense	c.1129	p.R377*	0.997	superfamily_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				83	0	0	43	20	31.746
UTS2	0	genome.wustl.edu	37	1	7907902	7907902	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7907902	7907902	C	A	SNP	UTS2	ENST00000054668	human	ensembl	74_37	-1	known	missense	c.344	p.S115I	0.349	NULL	pfam_Urotensin_II	-	no_errors	UTS2	HGNC	ENSG00000049247				137	0	0	65	49	42.9825
IFI44	0	genome.wustl.edu	37	1	79125147	79125147	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	79125147	79125147	C	T	SNP	IFI44	ENST00000370747	human	ensembl	74_37	+1	known	nonsense	c.991	p.R331*	0.216	superfamily_P-loop_NTPase	pfam_TLDc,superfamily_P-loop_NTPase	-	no_errors	IFI44	HGNC	ENSG00000137965				63	0	0	32	17	34.6939
ELTD1	0	genome.wustl.edu	37	1	79383340	79383340	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	79383340	79383340	T	C	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	silent	c.1728	p.G576	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				27	0	0	24	7	22.5806
ELTD1	0	genome.wustl.edu	37	1	79392576	79392576	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	79392576	79392576	G	A	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	nonsense	c.1078	p.R360*	0.028	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				42	0	0	38	10	20.8333
ELTD1	0	genome.wustl.edu	37	1	79392761	79392761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	79392761	79392761	G	A	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.893	p.A298V	1.000	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				62	0	0	41	15	26.7857
TNFRSF9	0	genome.wustl.edu	37	1	7998864	7998864	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	7998864	7998864	T	G	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.125	p.N42T	0.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				135	0	0	69	31	31
LPHN2	0	genome.wustl.edu	37	1	82302724	82302724	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	82302724	82302724	T	G	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	missense	c.55	p.F19V	1.000	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				57	0	0	36	21	36.8421
LPHN2	0	genome.wustl.edu	37	1	82409063	82409063	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	82409063	82409063	G	T	SNP	LPHN2	ENST00000370717	human	ensembl	74_37	+1	known	nonsense	c.808	p.E270*	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	LPHN2	HGNC	ENSG00000117114				142	0	0	76	52	40.625
SLC45A1	0	genome.wustl.edu	37	1	8399674	8399674	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	8399674	8399674	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	silent	c.1998	p.S666	0.002	superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				265	2	0.749064	152	56	26.9231
TTLL7	0	genome.wustl.edu	37	1	84386821	84386821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	84386821	84386821	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.1313	p.R438Q	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				64	0	0	53	29	35.3659
TTLL7	0	genome.wustl.edu	37	1	84399362	84399362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	84399362	84399362	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	74_37	-1	known	missense	c.976	p.E326K	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL7	HGNC	ENSG00000137941				181	0	0	98	29	22.8346
SSX2IP	0	genome.wustl.edu	37	1	85124050	85124050	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85124050	85124050	T	G	SNP	SSX2IP	ENST00000342203	human	ensembl	74_37	-1	known	missense	c.1029	p.R343S	0.509	NULL	pfam_Afadin/alpha-actinin-bd	-	no_errors	SSX2IP	HGNC	ENSG00000117155				85	0	0	57	20	25.974
LPAR3	0	genome.wustl.edu	37	1	85279676	85279676	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85279676	85279676	C	A	SNP	LPAR3	ENST00000370611	human	ensembl	74_37	-1	known	missense	c.915	p.K305N	1.000	prints_LPA_rcpt,prints_Melcrt_ACTH_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG7,prints_GPCR_Rhodpsn,prints_LPA_rcpt,prints_LPA_rcpt_EDG2,prints_Melcrt_ACTH_rcpt	-	no_errors	LPAR3	HGNC	ENSG00000171517				131	0	0	71	26	26.8041
MCOLN2	0	genome.wustl.edu	37	1	85403733	85403733	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85403733	85403733	A	C	SNP	MCOLN2	ENST00000370608	human	ensembl	74_37	-1	known	missense	c.1143	p.F381L	0.887	pfam_PKD1_2_channel	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898				68	0	0	59	18	23.3766
MCOLN2	0	genome.wustl.edu	37	1	85424296	85424296	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85424296	85424296	A	C	SNP	MCOLN2	ENST00000370608	human	ensembl	74_37	-1	known	nonsense	c.327	p.Y109*	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN2	HGNC	ENSG00000153898				97	0	0	69	23	25
MCOLN3	0	genome.wustl.edu	37	1	85499799	85499799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85499799	85499799	C	T	SNP	MCOLN3	ENST00000370589	human	ensembl	74_37	-1	known	missense	c.532	p.D178N	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732				125	0	0	64	36	36
MCOLN3	0	genome.wustl.edu	37	1	85511015	85511015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85511015	85511015	C	T	SNP	MCOLN3	ENST00000370589	human	ensembl	74_37	-1	known	missense	c.29	p.S10N	1.000	NULL	pfam_PKD1_2_channel	-	no_errors	MCOLN3	HGNC	ENSG00000055732				68	0	0	34	17	33.3333
WDR63	0	genome.wustl.edu	37	1	85583527	85583527	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85583527	85583527	C	A	SNP	WDR63	ENST00000294664	human	ensembl	74_37	+1	known	missense	c.1902	p.F634L	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR63	HGNC	ENSG00000162643				126	0	0	95	43	31.1594
BCL10	0	genome.wustl.edu	37	1	85736475	85736475	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85736475	85736475	G	A	SNP	BCL10	ENST00000370580	human	ensembl	74_37	-1	known	nonsense	c.172	p.R58*	1.000	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	BCL10	HGNC	ENSG00000142867				113	0	0	60	44	42.3077
DDAH1	0	genome.wustl.edu	37	1	85817243	85817243	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	85817243	85817243	G	A	SNP	DDAH1	ENST00000284031	human	ensembl	74_37	-1	known	silent	c.423	p.G141	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904				92	0	0	55	33	37.5
CYR61	0	genome.wustl.edu	37	1	86047711	86047711	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86047711	86047711	C	T	SNP	CYR61	ENST00000451137	human	ensembl	74_37	+1	known	silent	c.378	p.G126	0.651	pfam_VWF_C,smart_VWF_C,pirsf_IGFBP_CNN,pfscan_VWF_C	pfam_Cys_knot,pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	CYR61	HGNC	ENSG00000142871				188	0	0	108	42	28
CLCA1	0	genome.wustl.edu	37	1	86947924	86947924	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86947924	86947924	G	T	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.594	p.K198N	0.000	pfam_Cl_channel_Ca,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				51	0	0	37	15	28.8462
CLCA1	0	genome.wustl.edu	37	1	86952219	86952219	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86952219	86952219	G	A	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.965	p.R322H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				100	0	0	50	24	32.4324
CLCA1	0	genome.wustl.edu	37	1	86952423	86952423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86952423	86952423	G	A	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.1169	p.R390Q	0.004	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				144	0	0	71	28	28.2828
CLCA1	0	genome.wustl.edu	37	1	86956953	86956953	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86956953	86956953	T	G	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.1363	p.L455V	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				87	0	0	46	21	31.3433
CLCA1	0	genome.wustl.edu	37	1	86965337	86965337	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	86965337	86965337	C	A	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	missense	c.2354	p.A785D	1.000	superfamily_Fibronectin_type3,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				62	0	0	36	21	36.8421
CLCA3P	0	genome.wustl.edu	37	1	87100011	87100011	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	87100011	87100011	C	T	SNP	CLCA3P	ENST00000284054	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLCA3P	HGNC	ENSG00000153923				109	1	0.909091	80	24	23.0769
HS2ST1	0	genome.wustl.edu	37	1	87563550	87563550	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	87563550	87563550	C	T	SNP	HS2ST1	ENST00000370550	human	ensembl	74_37	+1	known	silent	c.618	p.G206	1.000	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS2ST1	HGNC	ENSG00000153936				116	0	0	61	23	27.381
ENSG00000267561	0	genome.wustl.edu	37	1	87633842	87633842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	87633842	87633842	G	A	SNP	ENSG00000267561	ENST00000370548	human	ensembl	74_37	+1	putative	missense	c.895	p.G299R	0.033	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	RP5-1052I5.2	Clone_based_vega_gene	ENSG00000267561				9	0	0	9	2	18.1818
PKN2	0	genome.wustl.edu	37	1	89236102	89236102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89236102	89236102	G	A	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.572	p.R191Q	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				115	0	0	51	36	41.3793
PKN2	0	genome.wustl.edu	37	1	89250336	89250336	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89250336	89250336	C	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.1000	p.R334C	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				75	0	0	42	27	39.1304
PKN2	0	genome.wustl.edu	37	1	89294214	89294214	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89294214	89294214	C	A	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.2470	p.L824I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				63	0	0	46	24	34.2857
RBMXL1	0	genome.wustl.edu	37	1	89449292	89449292	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89449292	89449292	G	T	SNP	RBMXL1	ENST00000321792	human	ensembl	74_37	-1	known	nonsense	c.218	p.S73*	0.983	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_RBM1CTR,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL1	HGNC	ENSG00000213516				337	3	0.882353	220	33	13.0435
GBP5	0	genome.wustl.edu	37	1	89733110	89733110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89733110	89733110	C	T	SNP	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	missense	c.418	p.D140N	0.256	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451				68	0	0	40	19	32.2034
KLHL17	0	genome.wustl.edu	37	1	899373	899373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	899373	899373	C	T	SNP	KLHL17	ENST00000338591	human	ensembl	74_37	+1	known	nonsense	c.1429	p.R477*	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL17	HGNC	ENSG00000187961				217	0	0	85	47	35.6061
LRRC8C	0	genome.wustl.edu	37	1	90179562	90179562	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	90179562	90179562	C	A	SNP	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	missense	c.1433	p.S478Y	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				111	0	0	70	38	35.1852
ZNF326	0	genome.wustl.edu	37	1	90478702	90478702	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	90478702	90478702	A	C	SNP	ZNF326	ENST00000340281	human	ensembl	74_37	+1	known	missense	c.832	p.N278H	0.999	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664				31	0	0	24	22	47.8261
SLC2A7	0	genome.wustl.edu	37	1	9079302	9079302	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	9079302	9079302	G	A	SNP	SLC2A7	ENST00000400906	human	ensembl	74_37	-1	known	silent	c.402	p.I134	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241				71	0	0	42	14	25
BARHL2	0	genome.wustl.edu	37	1	91178030	91178030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	91178030	91178030	C	T	SNP	BARHL2	ENST00000370445	human	ensembl	74_37	-1	known	missense	c.1003	p.A335T	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	BARHL2	HGNC	ENSG00000143032				45	0	0	19	8	29.6296
ZNF644	0	genome.wustl.edu	37	1	91404174	91404174	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	91404174	91404174	T	G	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.2737	p.N913H	0.991	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				84	0	0	68	23	25.2747
ZNF644	0	genome.wustl.edu	37	1	91404625	91404625	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	91404625	91404625	T	G	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.2286	p.K762N	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				100	0	0	91	43	32.0896
ZNF644	0	genome.wustl.edu	37	1	91405928	91405928	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	91405928	91405928	T	A	SNP	ZNF644	ENST00000337393	human	ensembl	74_37	-1	known	missense	c.983	p.Q328L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF644	HGNC	ENSG00000122482				108	0	0	76	31	28.972
CDC7	0	genome.wustl.edu	37	1	91985809	91985809	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	91985809	91985809	G	T	SNP	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	nonsense	c.1303	p.E435*	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046				72	0	0	37	16	30.1887
BRDT	0	genome.wustl.edu	37	1	92442839	92442839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	92442839	92442839	G	T	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	missense	c.858	p.K286N	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				98	0	0	78	38	32.7586
BRDT	0	genome.wustl.edu	37	1	92469985	92469985	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	92469985	92469985	G	A	SNP	BRDT	ENST00000362005	human	ensembl	74_37	+1	known	silent	c.2403	p.K801	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRDT	HGNC	ENSG00000137948				97	0	0	74	35	32.1101
EPHX4	0	genome.wustl.edu	37	1	92515886	92515886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	92515886	92515886	G	A	SNP	EPHX4	ENST00000370383	human	ensembl	74_37	+1	known	missense	c.617	p.R206Q	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_Epox_hydrolase-like,prints_AB_hydrolase_1	-	no_errors	EPHX4	HGNC	ENSG00000172031				84	0	0	63	25	28.4091
RPAP2	0	genome.wustl.edu	37	1	92846313	92846313	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	92846313	92846313	C	A	SNP	RPAP2	ENST00000610020	human	ensembl	74_37	+1	known	missense	c.1721	p.S574Y	0.871	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484				131	0	0	94	52	35.6164
H6PD	0	genome.wustl.edu	37	1	9305498	9305498	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	9305498	9305498	C	T	SNP	H6PD	ENST00000377403	human	ensembl	74_37	+1	known	missense	c.505	p.R169W	1.000	pfam_G6P_DH_NAD-bd,prints_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,prints_G6P_DH,tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	H6PD	HGNC	ENSG00000049239				193	1	0.515464	105	26	19.8473
EVI5	0	genome.wustl.edu	37	1	93073271	93073271	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	93073271	93073271	C	A	SNP	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	missense	c.1826	p.S609I	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				34	0	0	24	6	20
CCDC18	0	genome.wustl.edu	37	1	93672695	93672695	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	93672695	93672695	G	T	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	nonsense	c.1303	p.E435*	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				49	0	0	30	13	30.2326
CCDC18	0	genome.wustl.edu	37	1	93712497	93712497	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	93712497	93712497	G	T	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	nonsense	c.3538	p.E1180*	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483				47	0	0	42	20	32.2581
BCAR3	0	genome.wustl.edu	37	1	94107889	94107889	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94107889	94107889	G	T	SNP	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	missense	c.328	p.L110I	0.107	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936				107	0	0	74	30	28.8462
ABCA4	0	genome.wustl.edu	37	1	94463453	94463453	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94463453	94463453	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	silent	c.6693	p.I2231	0.661	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				65	0	0	34	14	29.1667
ABCA4	0	genome.wustl.edu	37	1	94526167	94526167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94526167	94526167	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.2086	p.I696V	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				123	0	0	60	31	34.0659
ABCA4	0	genome.wustl.edu	37	1	94528764	94528764	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94528764	94528764	T	C	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.1664	p.D555G	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				246	0	0	120	62	34.0659
ARHGAP29	0	genome.wustl.edu	37	1	94640272	94640272	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94640272	94640272	T	C	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	missense	c.2939	p.E980G	0.150	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				156	0	0	111	39	26
ARHGAP29	0	genome.wustl.edu	37	1	94650597	94650597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94650597	94650597	C	T	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	missense	c.1940	p.R647Q	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				44	0	0	22	21	48.8372
ARHGAP29	0	genome.wustl.edu	37	1	94651015	94651015	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	94651015	94651015	A	G	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	silent	c.1803	p.F601	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962				61	0	0	41	31	43.0556
DPYD	0	genome.wustl.edu	37	1	97548022	97548022	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	97548022	97548022	A	G	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.2771	p.V924A	1.000	NULL	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				161	0	0	105	41	28.0822
DPYD	0	genome.wustl.edu	37	1	97770839	97770839	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	97770839	97770839	G	A	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	nonsense	c.2275	p.R759*	1.000	pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				136	0	0	82	35	29.9145
PIK3CD	0	genome.wustl.edu	37	1	9780235	9780235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	9780235	9780235	G	A	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	missense	c.1300	p.A434T	0.988	superfamily_C2_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				127	0	0	54	17	23.9437
DPYD	0	genome.wustl.edu	37	1	97839170	97839170	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	97839170	97839170	A	C	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.2005	p.L669V	1.000	pfam_Dihydroorotate_DH_1_2,pfam_tRNA_hU_synthase,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641				77	0	0	58	20	25.641
AGRN	0	genome.wustl.edu	37	1	981387	981387	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	981387	981387	C	T	SNP	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	silent	c.2724	p.F908	0.943	smart_FacI_MAC,smart_Fol_N,smart_EG-like_dom	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				118	0	0	44	26	37.1429
LPPR4	0	genome.wustl.edu	37	1	99772241	99772241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	99772241	99772241	G	A	SNP	LPPR4	ENST00000370185	human	ensembl	74_37	+1	known	missense	c.1967	p.S656N	0.932	NULL	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	LPPR4	Uniprot_gn	ENSG00000117600				56	0	0	42	11	20.7547
HPS1	0	genome.wustl.edu	37	10	100190928	100190928	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	100190928	100190928	A	C	SNP	HPS1	ENST00000325103	human	ensembl	74_37	-1	known	missense	c.628	p.F210V	1.000	NULL	NULL	-	no_errors	HPS1	HGNC	ENSG00000107521				53	0	0	25	6	19.3548
GOT1	0	genome.wustl.edu	37	10	101163418	101163418	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	101163418	101163418	T	G	SNP	GOT1	ENST00000489349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOT1	HGNC	ENSG00000120053				155	0	0	80	36	31.0345
SLC25A28	0	genome.wustl.edu	37	10	101373638	101373638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	101373638	101373638	C	T	SNP	SLC25A28	ENST00000370495	human	ensembl	74_37	-1	known	missense	c.335	p.R112H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A28	HGNC	ENSG00000155287				57	0	0	24	8	25
COX15	0	genome.wustl.edu	37	10	101476256	101476256	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	101476256	101476256	T	G	SNP	COX15	ENST00000497381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	COX15	HGNC	ENSG00000014919				69	0	0	33	18	35.2941
DNMBP	0	genome.wustl.edu	37	10	101716155	101716155	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	101716155	101716155	G	T	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.1076	p.S359Y	0.002	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				129	0	0	54	35	39.3258
FAM178A	0	genome.wustl.edu	37	10	102676415	102676415	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	102676415	102676415	G	A	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	silent	c.273	p.R91	0.999	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				71	0	0	47	14	22.9508
FAM178A	0	genome.wustl.edu	37	10	102698458	102698458	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	102698458	102698458	G	T	SNP	FAM178A	ENST00000370269	human	ensembl	74_37	+1	known	missense	c.2619	p.E873D	1.000	NULL	NULL	-	no_errors	FAM178A	HGNC	ENSG00000119906				152	0	0	120	44	26.8293
KAZALD1	0	genome.wustl.edu	37	10	102824352	102824352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	102824352	102824352	G	A	SNP	KAZALD1	ENST00000370200	human	ensembl	74_37	+1	known	missense	c.767	p.R256H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	KAZALD1	HGNC	ENSG00000107821				93	0	0	41	25	37.8788
BTRC	0	genome.wustl.edu	37	10	103294454	103294454	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	103294454	103294454	G	A	SNP	BTRC	ENST00000370187	human	ensembl	74_37	+1	known	silent	c.1134	p.T378	0.002	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167				221	0	0	165	14	7.82123
POLL	0	genome.wustl.edu	37	10	103340084	103340084	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	103340084	103340084	G	A	SNP	POLL	ENST00000299206	human	ensembl	74_37	-1	known	silent	c.1284	p.V428	0.706	smart_DNA-dir_DNA_pol_X,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	pfam_DNA_pol_lambd_fingers_domain,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_DNA-dir_DNA_pol_X,pfscan_BRCT_dom,prints_DNA_pol_X_beta-like,prints_DNA_pol_X	-	no_errors	POLL	HGNC	ENSG00000166169				148	0	0	72	49	40.4959
C10orf76	0	genome.wustl.edu	37	10	103789309	103789309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	103789309	103789309	C	T	SNP	C10orf76	ENST00000311122	human	ensembl	74_37	-1	known	missense	c.500	p.R167K	0.006	NULL	NULL	-	no_errors	C10orf76	HGNC	ENSG00000120029				46	0	0	28	11	28.2051
HPS6	0	genome.wustl.edu	37	10	103826086	103826086	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	103826086	103826086	C	T	SNP	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	silent	c.855	p.F285	0.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				143	0	0	51	34	40
PSD	0	genome.wustl.edu	37	10	104164427	104164427	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104164427	104164427	G	T	SNP	PSD	ENST00000020673	human	ensembl	74_37	-1	known	missense	c.2613	p.F871L	1.000	smart_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD	HGNC	ENSG00000059915				264	0	0	132	61	31.6062
SUFU	0	genome.wustl.edu	37	10	104268934	104268934	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104268934	104268934	G	T	SNP	SUFU	ENST00000369902	human	ensembl	74_37	+1	known	missense	c.191	p.G64V	1.000	pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	pfam_SUFU_C,pfam_SUFU-like_domain,pirsf_Suppressor_of_fused_euk	-	no_errors	SUFU	HGNC	ENSG00000107882				153	0	0	68	42	38.1818
WBP1L	0	genome.wustl.edu	37	10	104569765	104569765	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104569765	104569765	C	T	SNP	WBP1L	ENST00000448841	human	ensembl	74_37	+1	known	silent	c.309	p.I103	0.667	pfam_Uncharacterised_WW-bd	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1L	HGNC	ENSG00000166272				195	0	0	119	40	25.1572
CYP17A1	0	genome.wustl.edu	37	10	104594476	104594476	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104594476	104594476	G	T	SNP	CYP17A1	ENST00000489268	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CYP17A1	HGNC	ENSG00000148795				63	0	0	15	15	50
NT5C2	0	genome.wustl.edu	37	10	104852955	104852955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104852955	104852955	C	T	SNP	NT5C2	ENST00000343289	human	ensembl	74_37	-1	known	missense	c.1100	p.R367Q	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685				126	0	0	86	32	27.1186
NT5C2	0	genome.wustl.edu	37	10	104854130	104854130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	104854130	104854130	C	T	SNP	NT5C2	ENST00000343289	human	ensembl	74_37	-1	known	missense	c.896	p.G299D	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685				63	0	0	30	7	18.9189
PDCD11	0	genome.wustl.edu	37	10	105172967	105172967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105172967	105172967	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1073	p.R358Q	0.063	superfamily_NA-bd_OB-fold	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				147	0	0	71	30	29.703
PDCD11	0	genome.wustl.edu	37	10	105177564	105177564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105177564	105177564	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.1786	p.V596I	0.982	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				153	0	0	90	40	30.7692
PDCD11	0	genome.wustl.edu	37	10	105198554	105198554	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105198554	105198554	T	C	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.4014	p.G1338	0.549	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				119	1	0.833333	64	29	31.1828
PDCD11	0	genome.wustl.edu	37	10	105203006	105203006	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105203006	105203006	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.5040	p.V1680	1.000	smart_HAT	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				120	1	0.826446	68	30	30.6122
PDCD11	0	genome.wustl.edu	37	10	105205159	105205159	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105205159	105205159	T	C	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.5469	p.H1823	0.996	pfam_Suf,smart_HAT	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				182	0	0	129	10	7.19424
OBFC1	0	genome.wustl.edu	37	10	105642357	105642357	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105642357	105642357	A	C	SNP	OBFC1	ENST00000466828	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OBFC1	HGNC	ENSG00000107960				60	0	0	33	13	28.2609
GTPBP4	0	genome.wustl.edu	37	10	1058589	1058589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	1058589	1058589	G	A	SNP	GTPBP4	ENST00000360803	human	ensembl	74_37	+1	known	missense	c.1529	p.R510Q	0.989	NULL	pfam_NOG1_Rossman_fold_dom,pfam_NOG_C,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_MIRO-like,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP4	HGNC	ENSG00000107937				32	0	0	27	13	32.5
WDR96	0	genome.wustl.edu	37	10	105900722	105900722	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105900722	105900722	T	C	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	missense	c.4309	p.T1437A	0.998	NULL	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748				29	0	0	31	10	24.3902
WDR96	0	genome.wustl.edu	37	10	105921768	105921768	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	105921768	105921768	T	C	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	missense	c.3365	p.D1122G	1.000	NULL	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748				424	0	0	249	126	33.6
CCDC147	0	genome.wustl.edu	37	10	106128305	106128305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106128305	106128305	C	T	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.917	p.A306V	0.984	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				99	0	0	54	17	23.9437
CCDC147	0	genome.wustl.edu	37	10	106160654	106160654	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106160654	106160654	G	T	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	nonsense	c.2032	p.E678*	0.991	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				54	0	0	37	27	42.1875
CCDC147	0	genome.wustl.edu	37	10	106209871	106209871	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106209871	106209871	G	T	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	nonsense	c.2419	p.E807*	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				99	0	0	92	44	32.3529
SORCS3	0	genome.wustl.edu	37	10	106737154	106737154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106737154	106737154	C	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.857	p.A286V	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				96	0	0	43	16	27.1186
SORCS3	0	genome.wustl.edu	37	10	106737155	106737155	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106737155	106737155	G	A	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	silent	c.858	p.A286	0.005	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				97	0	0	41	18	30.5085
SORCS3	0	genome.wustl.edu	37	10	106899200	106899200	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	106899200	106899200	G	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	nonsense	c.1258	p.E420*	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				165	0	0	87	34	28.0992
SMNDC1	0	genome.wustl.edu	37	10	112058499	112058499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	112058499	112058499	G	A	SNP	SMNDC1	ENST00000369603	human	ensembl	74_37	-1	known	missense	c.170	p.T57M	0.999	NULL	pfam_Survival_motor_neuron,smart_Tudor,pfscan_Tudor	-	no_errors	SMNDC1	HGNC	ENSG00000119953				51	0	0	36	26	41.9355
WDR37	0	genome.wustl.edu	37	10	1126003	1126003	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	1126003	1126003	G	A	SNP	WDR37	ENST00000263150	human	ensembl	74_37	+1	known	silent	c.288	p.A96	0.015	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR37	HGNC	ENSG00000047056				78	0	0	42	21	33.3333
PDCD4	0	genome.wustl.edu	37	10	112635813	112635813	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	112635813	112635813	A	G	SNP	PDCD4	ENST00000280154	human	ensembl	74_37	+1	known	missense	c.28	p.N10D	1.000	NULL	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593				46	0	0	50	4	7.40741
TECTB	0	genome.wustl.edu	37	10	114053507	114053507	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114053507	114053507	C	A	SNP	TECTB	ENST00000369422	human	ensembl	74_37	+1	known	missense	c.495	p.F165L	0.998	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TECTB	HGNC	ENSG00000119913				95	0	0	63	22	25.8824
TECTB	0	genome.wustl.edu	37	10	114059303	114059303	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114059303	114059303	C	T	SNP	TECTB	ENST00000369422	human	ensembl	74_37	+1	known	silent	c.888	p.V296	0.114	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TECTB	HGNC	ENSG00000119913				83	0	0	57	16	21.9178
ACSL5	0	genome.wustl.edu	37	10	114186031	114186031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114186031	114186031	G	A	SNP	ACSL5	ENST00000356116	human	ensembl	74_37	+1	known	missense	c.1921	p.V641M	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142				114	0	0	61	27	30.6818
ACSL5	0	genome.wustl.edu	37	10	114186112	114186112	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114186112	114186112	A	C	SNP	ACSL5	ENST00000356116	human	ensembl	74_37	+1	known	missense	c.2002	p.N668H	0.998	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL5	HGNC	ENSG00000197142				108	0	0	44	26	37.1429
VTI1A	0	genome.wustl.edu	37	10	114224397	114224397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114224397	114224397	G	A	SNP	VTI1A	ENST00000393077	human	ensembl	74_37	+1	known	missense	c.245	p.G82E	1.000	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1A	HGNC	ENSG00000151532				43	0	0	28	18	39.1304
TCF7L2	0	genome.wustl.edu	37	10	114920412	114920412	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114920412	114920412	C	T	SNP	TCF7L2	ENST00000534894	human	ensembl	74_37	+1	known	missense	c.1477	p.R493W	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				21	0	0	2	5	71.4286
TCF7L2	0	genome.wustl.edu	37	10	114925333	114925333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	114925333	114925333	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	missense	c.1462	p.R488C	1.000	NULL	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				207	0	0	134	61	31.2821
USP6NL	0	genome.wustl.edu	37	10	11504533	11504533	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	11504533	11504533	A	G	SNP	USP6NL	ENST00000379237	human	ensembl	74_37	-1	known	silent	c.2463	p.S821	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429				147	0	0	116	45	27.9503
NRAP	0	genome.wustl.edu	37	10	115380377	115380377	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	115380377	115380377	C	A	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	nonsense	c.2884	p.E962*	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				168	0	0	99	44	30.7692
NHLRC2	0	genome.wustl.edu	37	10	115661480	115661480	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	115661480	115661480	C	T	SNP	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	nonsense	c.1195	p.R399*	1.000	NULL	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				188	0	0	113	58	33.9181
NHLRC2	0	genome.wustl.edu	37	10	115662299	115662299	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	115662299	115662299	A	G	SNP	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	missense	c.1441	p.T481A	0.527	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				125	0	0	92	44	32.3529
C10orf118	0	genome.wustl.edu	37	10	115887281	115887281	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	115887281	115887281	T	G	SNP	C10orf118	ENST00000369287	human	ensembl	74_37	-1	known	missense	c.2332	p.K778Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	C10orf118	HGNC	ENSG00000165813				82	0	0	62	34	35.4167
TRUB1	0	genome.wustl.edu	37	10	116734914	116734914	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	116734914	116734914	A	G	SNP	TRUB1	ENST00000298746	human	ensembl	74_37	+1	known	missense	c.826	p.T276A	1.000	superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832				179	0	0	167	21	11.1702
ATRNL1	0	genome.wustl.edu	37	10	116931127	116931127	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	116931127	116931127	T	C	SNP	ATRNL1	ENST00000529665	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	ATRNL1	HGNC	ENSG00000107518				38	0	0	21	8	27.5862
ATRNL1	0	genome.wustl.edu	37	10	117024726	117024726	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	117024726	117024726	T	G	SNP	ATRNL1	ENST00000355044	human	ensembl	74_37	+1	known	missense	c.1744	p.F582V	1.000	pfam_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_Plexin_repeat,pfam_CUB_dom,pfam_EGF_extracell,superfamily_C-type_lectin_fold,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_EG-like_dom,smart_CUB_dom,smart_Plexin-like_fold,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRNL1	HGNC	ENSG00000107518				127	0	0	104	42	28.7671
GFRA1	0	genome.wustl.edu	37	10	117849401	117849401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	117849401	117849401	C	T	SNP	GFRA1	ENST00000355422	human	ensembl	74_37	-1	known	missense	c.1048	p.D350N	1.000	pirsf_Glial_neurotroph_fac_rcpt_a1/2	pfam_GDNF/GAS1,smart_GDNF/GAS1,pirsf_Glial_neurotroph_fac_rcpt_a1/2,prints_GDNF_rcpt,prints_GDNF_rcpt_A1	-	no_errors	GFRA1	HGNC	ENSG00000151892				82	0	0	35	16	31.3725
PNLIPRP3	0	genome.wustl.edu	37	10	118236226	118236226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118236226	118236226	A	G	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.1235	p.N412S	0.805	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				110	0	0	65	35	35
PNLIP	0	genome.wustl.edu	37	10	118306875	118306875	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118306875	118306875	G	T	SNP	PNLIP	ENST00000369221	human	ensembl	74_37	+1	known	missense	c.116	p.R39I	1.000	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIP	HGNC	ENSG00000175535				150	0	0	65	36	35.6436
PNLIPRP1	0	genome.wustl.edu	37	10	118354250	118354250	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118354250	118354250	C	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	74_37	+1	known	silent	c.339	p.F113	0.231	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase_panc	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021				157	0	0	66	36	35.2941
PNLIPRP2	0	genome.wustl.edu	37	10	118383524	118383524	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118383524	118383524	C	T	SNP	PNLIPRP2	ENST00000537242	human	ensembl	74_37	+1	known	nonsense	c.118	p.R40*	0.980	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase_panc	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase,pfscan_PLAT/LH2_dom	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862				94	0	0	44	26	37.1429
HSPA12A	0	genome.wustl.edu	37	10	118460485	118460485	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118460485	118460485	T	G	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.410	p.E137A	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				184	0	0	93	39	29.5455
KIAA1598	0	genome.wustl.edu	37	10	118661437	118661437	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118661437	118661437	G	A	SNP	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	silent	c.1512	p.S504	1.000	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				39	0	0	18	10	35.7143
KCNK18	0	genome.wustl.edu	37	10	118960684	118960684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	118960684	118960684	A	C	SNP	KCNK18	ENST00000334549	human	ensembl	74_37	+1	known	missense	c.238	p.K80Q	0.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK18	HGNC	ENSG00000186795				292	0	0	139	71	33.8095
SLC18A2	0	genome.wustl.edu	37	10	119014811	119014811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	119014811	119014811	C	T	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.724	p.L242F	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646				69	0	0	51	17	25
PDZD8	0	genome.wustl.edu	37	10	119043112	119043112	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	119043112	119043112	C	T	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	silent	c.3132	p.Q1044	1.000	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				157	0	0	91	50	35.461
PDZD8	0	genome.wustl.edu	37	10	119044160	119044160	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	119044160	119044160	C	A	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	missense	c.2084	p.R695I	0.549	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				119	0	0	78	31	28.4404
PDZD8	0	genome.wustl.edu	37	10	119044314	119044314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	119044314	119044314	C	T	SNP	PDZD8	ENST00000334464	human	ensembl	74_37	-1	known	missense	c.1930	p.D644N	0.391	NULL	pfam_PDZ,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_PDZ,smart_PDZ,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_PDZ,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	PDZD8	HGNC	ENSG00000165650				106	0	0	60	35	36.8421
FAM204A	0	genome.wustl.edu	37	10	120070249	120070249	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	120070249	120070249	A	C	SNP	FAM204A	ENST00000469758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM204A	HGNC	ENSG00000165669				16	0	0	15	11	42.3077
CACUL1	0	genome.wustl.edu	37	10	120460905	120460905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	120460905	120460905	C	T	SNP	CACUL1	ENST00000369151	human	ensembl	74_37	-1	known	missense	c.709	p.E237K	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	-	no_errors	CACUL1	HGNC	ENSG00000151893				68	0	0	47	35	42.6829
EIF3A	0	genome.wustl.edu	37	10	120825078	120825078	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	120825078	120825078	A	G	SNP	EIF3A	ENST00000369144	human	ensembl	74_37	-1	known	missense	c.955	p.S319P	1.000	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	EIF3A	HGNC	ENSG00000107581				144	0	0	72	36	33.3333
SFXN4	0	genome.wustl.edu	37	10	120923675	120923675	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	120923675	120923675	A	C	SNP	SFXN4	ENST00000355697	human	ensembl	74_37	-1	known	missense	c.145	p.L49V	0.467	pfam_Mtc	pfam_Mtc	-	no_errors	SFXN4	HGNC	ENSG00000183605				118	0	0	63	60	48.7805
BAG3	0	genome.wustl.edu	37	10	121436099	121436099	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	121436099	121436099	G	T	SNP	BAG3	ENST00000369085	human	ensembl	74_37	+1	known	nonsense	c.1033	p.E345*	0.967	NULL	pfam_BAG_domain,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_BAG_domain,pfscan_BAG_domain,pfscan_WW_dom	-	no_errors	BAG3	HGNC	ENSG00000151929				250	1	0.398406	108	81	42.8571
INPP5F	0	genome.wustl.edu	37	10	121565919	121565919	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	121565919	121565919	T	C	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	missense	c.1367	p.V456A	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				23	0	0	22	8	26.6667
CDC123	0	genome.wustl.edu	37	10	12280462	12280462	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	12280462	12280462	T	G	SNP	CDC123	ENST00000281141	human	ensembl	74_37	+1	known	missense	c.695	p.F232C	0.989	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465				40	0	0	24	13	35.1351
FGFR2	0	genome.wustl.edu	37	10	123274722	123274722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	123274722	123274722	C	T	SNP	FGFR2	ENST00000457416	human	ensembl	74_37	-1	known	missense	c.1199	p.R400Q	1.000	pirsf_FGF_rcpt_fam	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR2	HGNC	ENSG00000066468				125	1	0.793651	85	36	29.7521
NSMCE4A	0	genome.wustl.edu	37	10	123719125	123719125	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	123719125	123719125	A	C	SNP	NSMCE4A	ENST00000459911	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.803	-	-	-	no_errors	NSMCE4A	HGNC	ENSG00000107672				54	0	0	40	17	29.8246
TACC2	0	genome.wustl.edu	37	10	123845456	123845456	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	123845456	123845456	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	silent	c.3441	p.P1147	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				75	0	0	40	20	33.3333
TACC2	0	genome.wustl.edu	37	10	123997519	123997519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	123997519	123997519	A	G	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.8315	p.Y2772C	1.000	pfam_TACC	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				49	0	0	31	19	38
TACC2	0	genome.wustl.edu	37	10	124009084	124009084	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124009084	124009084	C	T	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	nonsense	c.8686	p.R2896*	0.991	pfam_TACC	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				59	0	0	30	18	37.5
BTBD16	0	genome.wustl.edu	37	10	124043396	124043396	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124043396	124043396	C	A	SNP	BTBD16	ENST00000368994	human	ensembl	74_37	+1	known	missense	c.201	p.F67L	0.005	superfamily_BTB/POZ_fold	superfamily_BTB/POZ_fold	-	no_errors	BTBD16	HGNC	ENSG00000138152				48	0	0	39	25	39.0625
HTRA1	0	genome.wustl.edu	37	10	124271569	124271569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124271569	124271569	C	T	SNP	HTRA1	ENST00000368984	human	ensembl	74_37	+1	known	missense	c.1262	p.T421I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1,pfam_PDZ,pfam_Kazal_dom,pfam_IGFBP-like,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA1	HGNC	ENSG00000166033				118	0	0	67	23	25.5556
CUZD1	0	genome.wustl.edu	37	10	124594392	124594392	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124594392	124594392	T	C	SNP	CUZD1	ENST00000368904	human	ensembl	74_37	-1	known	silent	c.1212	p.S404	0.001	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	CUZD1	HGNC	ENSG00000138161				51	0	0	30	16	34.7826
C10orf88	0	genome.wustl.edu	37	10	124692137	124692137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124692137	124692137	G	T	SNP	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	missense	c.1144	p.L382I	1.000	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				44	0	0	24	11	31.4286
ACADSB	0	genome.wustl.edu	37	10	124812651	124812651	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	124812651	124812651	G	T	SNP	ACADSB	ENST00000358776	human	ensembl	74_37	+1	known	missense	c.1203	p.E401D	1.000	pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACADSB	HGNC	ENSG00000196177				78	0	0	39	27	40.9091
C10orf137	0	genome.wustl.edu	37	10	127422070	127422070	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	127422070	127422070	T	G	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.1226	p.F409C	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				42	0	0	23	23	50
C10orf137	0	genome.wustl.edu	37	10	127431743	127431743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	127431743	127431743	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	missense	c.2488	p.P830S	1.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				56	0	0	45	18	28.5714
MMP21	0	genome.wustl.edu	37	10	127459031	127459031	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	127459031	127459031	C	T	SNP	MMP21	ENST00000368808	human	ensembl	74_37	-1	known	missense	c.1109	p.R370Q	0.965	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP21	HGNC	ENSG00000154485				207	1	0.480769	97	41	29.7101
MKI67	0	genome.wustl.edu	37	10	129899683	129899683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	129899683	129899683	G	A	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.9544	p.L3182F	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				223	0	0	131	48	26.8156
MKI67	0	genome.wustl.edu	37	10	129901203	129901203	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	129901203	129901203	T	G	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.8901	p.K2967N	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				192	0	0	71	74	51.0345
MKI67	0	genome.wustl.edu	37	10	129904177	129904177	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	129904177	129904177	A	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.5927	p.I1976S	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				367	0	0	182	104	36.3636
MKI67	0	genome.wustl.edu	37	10	129905488	129905488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	129905488	129905488	T	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.4616	p.H1539R	0.000	pfam_K167R	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				461	1	0.21645	331	30	8.31025
MKI67	0	genome.wustl.edu	37	10	129907415	129907415	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	129907415	129907415	T	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.2689	p.N897D	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				188	0	0	101	57	36.0759
MGMT	0	genome.wustl.edu	37	10	131557541	131557541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	131557541	131557541	T	C	SNP	MGMT	ENST00000306010	human	ensembl	74_37	+1	known	missense	c.443	p.L148S	0.999	pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd	-	no_errors	MGMT	HGNC	ENSG00000170430				159	0	0	86	43	33.3333
EBF3	0	genome.wustl.edu	37	10	131760461	131760461	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	131760461	131760461	G	A	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	missense	c.385	p.R129C	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				125	0	0	49	28	36.3636
GLRX3	0	genome.wustl.edu	37	10	131943557	131943557	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	131943557	131943557	G	T	SNP	GLRX3	ENST00000331244	human	ensembl	74_37	+1	known	nonsense	c.175	p.E59*	0.993	pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010				75	0	0	43	19	30.6452
TCERG1L	0	genome.wustl.edu	37	10	132915125	132915125	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	132915125	132915125	C	T	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	silent	c.1332	p.P444	0.016	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				9	0	0	9	4	30.7692
TCERG1L	0	genome.wustl.edu	37	10	132965127	132965127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	132965127	132965127	C	T	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	missense	c.878	p.R293Q	0.031	NULL	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				63	0	0	35	5	12.5
PHYH	0	genome.wustl.edu	37	10	13336491	13336491	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	13336491	13336491	C	A	SNP	PHYH	ENST00000263038	human	ensembl	74_37	-1	known	missense	c.351	p.M117I	0.000	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537				99	0	0	47	31	39.7436
PPP2R2D	0	genome.wustl.edu	37	10	133758887	133758887	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	133758887	133758887	C	T	SNP	PPP2R2D	ENST00000455566	human	ensembl	74_37	+1	known	silent	c.651	p.F217	0.415	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2D	HGNC	ENSG00000175470				147	0	0	67	39	36.7925
BNIP3	0	genome.wustl.edu	37	10	133784192	133784192	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	133784192	133784192	T	G	SNP	BNIP3	ENST00000368636	human	ensembl	74_37	-1	known	missense	c.489	p.K163N	0.999	pfam_BNIP3	pfam_BNIP3	-	no_errors	BNIP3	HGNC	ENSG00000176171				60	0	0	33	22	40
DPYSL4	0	genome.wustl.edu	37	10	134016247	134016247	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	134016247	134016247	T	G	SNP	DPYSL4	ENST00000338492	human	ensembl	74_37	+1	known	missense	c.1379	p.F460C	0.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL4	HGNC	ENSG00000151640				166	0	0	49	30	37.9747
LRRC27	0	genome.wustl.edu	37	10	134161693	134161693	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	134161693	134161693	G	T	SNP	LRRC27	ENST00000368613	human	ensembl	74_37	+1	known	missense	c.759	p.W253C	0.952	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC27	HGNC	ENSG00000148814				108	0	0	55	25	31.25
BEND7	0	genome.wustl.edu	37	10	13481494	13481494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	13481494	13481494	G	A	SNP	BEND7	ENST00000396900	human	ensembl	74_37	-1	known	missense	c.1238	p.A413V	0.000	NULL	pfam_BEN_domain	-	no_errors	BEND7	HGNC	ENSG00000165626				58	0	0	29	11	27.5
KNDC1	0	genome.wustl.edu	37	10	135009295	135009295	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	135009295	135009295	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.1704	p.P568	0.005	superfamily_Kinase-like_dom,smart_KIND	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				27	0	0	10	3	23.0769
KNDC1	0	genome.wustl.edu	37	10	135015105	135015105	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	135015105	135015105	C	T	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	silent	c.3096	p.F1032	0.006	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				136	0	0	72	33	31.4286
CYP2E1	0	genome.wustl.edu	37	10	135347293	135347293	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	135347293	135347293	G	A	SNP	CYP2E1	ENST00000252945	human	ensembl	74_37	+1	known	missense	c.859	p.D287N	0.436	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2E-like	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2E-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2E1	HGNC	ENSG00000130649				174	0	0	79	33	29.4643
FRMD4A	0	genome.wustl.edu	37	10	13735997	13735997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	13735997	13735997	C	T	SNP	FRMD4A	ENST00000357447	human	ensembl	74_37	-1	known	missense	c.1018	p.D340N	1.000	NULL	pfam_DUF3338,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4A	HGNC	ENSG00000151474				111	0	0	50	25	33.3333
ADARB2	0	genome.wustl.edu	37	10	1405799	1405799	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	1405799	1405799	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	silent	c.501	p.F167	0.988	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				40	0	0	13	10	43.4783
FAM107B	0	genome.wustl.edu	37	10	14572476	14572476	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	14572476	14572476	G	T	SNP	FAM107B	ENST00000181796	human	ensembl	74_37	-1	known	missense	c.508	p.L170I	0.987	NULL	pfam_DUF1151	-	no_errors	FAM107B	HGNC	ENSG00000065809				109	0	0	61	27	30.6818
HSPA14	0	genome.wustl.edu	37	10	14893117	14893117	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	14893117	14893117	A	C	SNP	HSPA14	ENST00000470430	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPA14	HGNC	ENSG00000187522				22	0	0	10	7	41.1765
SUV39H2	0	genome.wustl.edu	37	10	14938972	14938972	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	14938972	14938972	C	A	SNP	SUV39H2	ENST00000354919	human	ensembl	74_37	+1	known	missense	c.305	p.S102Y	1.000	pirsf_Histone_H3-K9_MeTrfase,pfscan_Chromo_domain/shadow	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,smart_Post-SET_dom,pirsf_Histone_H3-K9_MeTrfase,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom,pfscan_Chromo_domain/shadow	-	no_errors	SUV39H2	HGNC	ENSG00000152455				87	0	0	60	30	33.3333
DCLRE1C	0	genome.wustl.edu	37	10	14951273	14951273	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	14951273	14951273	C	T	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	missense	c.1213	p.V405I	0.885	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457				69	0	0	43	21	32.8125
NMT2	0	genome.wustl.edu	37	10	15161473	15161473	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15161473	15161473	C	A	SNP	NMT2	ENST00000378165	human	ensembl	74_37	-1	known	missense	c.1039	p.D347Y	1.000	pfam_MyristoylCoA_TrFase_C,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	pfam_MyristoylCoA_TrFase_C,pfam_MyristoylCoA_TrFase_N,superfamily_Acyl_CoA_acyltransferase,pirsf_MyristoylCoA_TrFase	-	no_errors	NMT2	HGNC	ENSG00000152465				124	0	0	69	28	28.866
FAM171A1	0	genome.wustl.edu	37	10	15255460	15255460	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15255460	15255460	G	A	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	silent	c.2127	p.F709	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				189	1	0.526316	99	31	23.8462
FAM171A1	0	genome.wustl.edu	37	10	15258059	15258059	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15258059	15258059	C	T	SNP	FAM171A1	ENST00000378116	human	ensembl	74_37	-1	known	missense	c.922	p.A308T	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468				47	0	0	34	18	34.6154
ITGA8	0	genome.wustl.edu	37	10	15573138	15573138	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15573138	15573138	G	T	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	missense	c.2893	p.P965T	0.982	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				101	0	0	73	28	27.7228
ITGA8	0	genome.wustl.edu	37	10	15600166	15600166	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15600166	15600166	G	A	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	silent	c.2673	p.S891	0.624	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				107	0	0	48	23	32.3944
ITGA8	0	genome.wustl.edu	37	10	15628612	15628612	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15628612	15628612	G	A	SNP	ITGA8	ENST00000378076	human	ensembl	74_37	-1	known	silent	c.2343	p.I781	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA8	HGNC	ENSG00000077943				63	0	0	42	14	25
FAM188A	0	genome.wustl.edu	37	10	15821133	15821133	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	15821133	15821133	T	C	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	missense	c.1196	p.Y399C	1.000	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				60	0	0	38	21	35.5932
PTER	0	genome.wustl.edu	37	10	16526545	16526545	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	16526545	16526545	G	T	SNP	PTER	ENST00000298942	human	ensembl	74_37	+1	known	missense	c.162	p.M54I	1.000	pfam_Aryldialkylphosphatase	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				101	0	0	50	36	41.8605
PTER	0	genome.wustl.edu	37	10	16553255	16553255	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	16553255	16553255	G	A	SNP	PTER	ENST00000298942	human	ensembl	74_37	+1	known	silent	c.1050	p.*350	0.089	NULL	pfam_Aryldialkylphosphatase,pfam_TatD_family	-	no_errors	PTER	HGNC	ENSG00000165983				120	0	0	75	35	31.8182
CUBN	0	genome.wustl.edu	37	10	16882375	16882375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	16882375	16882375	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9986	p.S3329L	0.071	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				107	0	0	59	26	30.5882
CUBN	0	genome.wustl.edu	37	10	16911750	16911750	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	16911750	16911750	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.9339	p.C3113	0.993	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				159	0	0	80	45	36
CUBN	0	genome.wustl.edu	37	10	16918924	16918924	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	16918924	16918924	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.9078	p.F3026	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				122	0	0	65	28	30.1075
CUBN	0	genome.wustl.edu	37	10	17024530	17024530	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17024530	17024530	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.4648	p.L1550	0.987	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				89	0	0	54	29	34.9398
CUBN	0	genome.wustl.edu	37	10	17145179	17145179	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17145179	17145179	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.1475	p.V492A	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				81	0	0	33	30	47.619
CUBN	0	genome.wustl.edu	37	10	17147483	17147483	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17147483	17147483	A	G	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.1203	p.S401	0.467	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				129	0	0	74	29	28.1553
CUBN	0	genome.wustl.edu	37	10	17165587	17165587	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17165587	17165587	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.489	p.K163	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				38	0	0	24	5	17.2414
TRDMT1	0	genome.wustl.edu	37	10	17201203	17201203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17201203	17201203	C	T	SNP	TRDMT1	ENST00000377799	human	ensembl	74_37	-1	known	missense	c.485	p.R162Q	0.991	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	pfam_C5_MeTfrase,prints_C5_MeTfrase,tigrfam_C5_MeTfrase	-	no_errors	TRDMT1	HGNC	ENSG00000107614				86	0	0	75	39	34.2105
VIM	0	genome.wustl.edu	37	10	17277206	17277206	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17277206	17277206	G	T	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	missense	c.1047	p.E349D	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				98	0	0	70	24	25.5319
ST8SIA6	0	genome.wustl.edu	37	10	17432535	17432535	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17432535	17432535	C	T	SNP	ST8SIA6	ENST00000377602	human	ensembl	74_37	-1	known	silent	c.285	p.T95	0.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA6	HGNC	ENSG00000148488				155	0	0	95	39	29.1045
101928757	0	genome.wustl.edu	37	10	17891665	17891665	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17891665	17891665	A	C	SNP	101928757	ENST00000457317	human	ensembl	74_37	+1	known	missense	c.1146	p.K382N	0.975	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_Ricin_B_lectin,superfamily_C-type_lectin_fold,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				140	0	0	73	57	43.8462
101928757	0	genome.wustl.edu	37	10	17905582	17905582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	17905582	17905582	G	T	SNP	101928757	ENST00000331429	human	ensembl	74_37	+1	novel	missense	c.1673	p.R558M	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				49	0	0	9	22	70.9677
MRC1	0	genome.wustl.edu	37	10	18138590	18138590	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	18138590	18138590	A	C	SNP	MRC1	ENST00000239761	human	ensembl	74_37	+1	known	missense	c.1146	p.K382N	0.995	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586				33	0	0	16	5	23.8095
SLC39A12	0	genome.wustl.edu	37	10	18280228	18280228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	18280228	18280228	A	G	SNP	SLC39A12	ENST00000377369	human	ensembl	74_37	+1	known	missense	c.1418	p.D473G	0.003	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A12	HGNC	ENSG00000148482				62	0	0	54	22	28.9474
NSUN6	0	genome.wustl.edu	37	10	18875000	18875000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	18875000	18875000	T	G	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	missense	c.800	p.K267T	1.000	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058				51	0	0	32	17	34.6939
PLXDC2	0	genome.wustl.edu	37	10	20465940	20465940	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	20465940	20465940	G	T	SNP	PLXDC2	ENST00000377252	human	ensembl	74_37	+1	known	missense	c.896	p.R299I	1.000	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	-	no_errors	PLXDC2	HGNC	ENSG00000120594				123	0	0	78	33	29.7297
NEBL	0	genome.wustl.edu	37	10	21098812	21098812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	21098812	21098812	C	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2534	p.R845H	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				94	0	0	59	26	30.5882
NEBL	0	genome.wustl.edu	37	10	21177096	21177096	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	21177096	21177096	G	T	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.299	p.S100Y	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				68	0	0	43	19	30.6452
MLLT10	0	genome.wustl.edu	37	10	21906051	21906051	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	21906051	21906051	A	C	SNP	MLLT10	ENST00000307729	human	ensembl	74_37	+1	known	missense	c.614	p.K205T	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MLLT10	HGNC	ENSG00000078403				52	0	0	47	14	22.9508
DNAJC1	0	genome.wustl.edu	37	10	22171227	22171227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	22171227	22171227	C	T	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.962	p.R321Q	0.978	NULL	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770				39	0	0	46	20	30.303
SPAG6	0	genome.wustl.edu	37	10	22680806	22680806	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	22680806	22680806	C	A	SNP	SPAG6	ENST00000376603	human	ensembl	74_37	+1	known	missense	c.1382	p.S461Y	0.002	superfamily_ARM-type_fold	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327				61	0	0	30	13	30.2326
C10orf67	0	genome.wustl.edu	37	10	23611421	23611421	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	23611421	23611421	G	T	SNP	C10orf67	ENST00000323327	human	ensembl	74_37	-1	known	missense	c.376	p.L126I	0.003	NULL	NULL	-	no_errors	C10orf67	HGNC	ENSG00000179133				67	0	0	42	16	27.5862
KIAA1217	0	genome.wustl.edu	37	10	24832504	24832504	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	24832504	24832504	C	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	silent	c.4305	p.V1435	0.669	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				116	0	0	53	33	38.3721
ARHGAP21	0	genome.wustl.edu	37	10	24874037	24874037	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	24874037	24874037	T	C	SNP	ARHGAP21	ENST00000396432	human	ensembl	74_37	-1	known	silent	c.5181	p.A1727	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863				198	0	0	112	68	37.7778
THNSL1	0	genome.wustl.edu	37	10	25312156	25312156	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	25312156	25312156	C	T	SNP	THNSL1	ENST00000376356	human	ensembl	74_37	+1	known	missense	c.4	p.L2F	0.999	superfamily_P-loop_NTPase	pfam_Shikimate_kinase/TSH1,pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_P-loop_NTPase,prints_Shikimate_kinase/TSH1,tigrfam_Thr_synthase_like	-	no_errors	THNSL1	HGNC	ENSG00000185875				47	0	0	39	13	25
GPR158	0	genome.wustl.edu	37	10	25464659	25464659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	25464659	25464659	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.310	p.E104K	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				105	0	0	47	21	30.8824
GPR158	0	genome.wustl.edu	37	10	25509998	25509998	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	25509998	25509998	A	G	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.920	p.D307G	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				76	0	0	45	21	31.8182
GPR158	0	genome.wustl.edu	37	10	25861601	25861601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	25861601	25861601	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.1538	p.R513Q	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				114	0	0	84	40	32.2581
MYO3A	0	genome.wustl.edu	37	10	26385323	26385323	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	26385323	26385323	T	G	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.1576	p.F526V	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				41	0	0	25	17	40.4762
MYO3A	0	genome.wustl.edu	37	10	26490219	26490219	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	26490219	26490219	G	T	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.4571	p.R1524I	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				20	0	0	13	5	27.7778
ZMYND11	0	genome.wustl.edu	37	10	267147	267147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	267147	267147	G	A	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.289	p.E97K	1.000	superfamily_Znf_FYVE_PHD	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				179	0	0	111	46	29.2994
ABI1	0	genome.wustl.edu	37	10	27066139	27066139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27066139	27066139	C	T	SNP	ABI1	ENST00000355394	human	ensembl	74_37	-1	known	missense	c.317	p.R106Q	1.000	pfam_Abl-interactor_HHR_dom,pfscan_T_SNARE_dom	pfam_Abl-interactor_HHR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,pfscan_T_SNARE_dom,prints_SH3_domain,prints_p67phox	-	no_errors	ABI1	HGNC	ENSG00000136754				52	0	0	29	12	29.2683
LINC00202-1	0	genome.wustl.edu	37	10	27223483	27223483	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27223483	27223483	G	T	SNP	LINC00202-1	ENST00000458682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00202-1	HGNC	ENSG00000232224				65	0	0	40	24	37.5
ANKRD26	0	genome.wustl.edu	37	10	27323866	27323866	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27323866	27323866	A	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.3561	p.F1187L	0.085	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				179	0	0	128	56	30.4348
ANKRD26	0	genome.wustl.edu	37	10	27335401	27335401	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27335401	27335401	T	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	silent	c.1914	p.K638	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				84	0	0	43	19	30.6452
ANKRD26	0	genome.wustl.edu	37	10	27356125	27356125	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27356125	27356125	A	C	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.1315	p.L439V	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				85	0	0	55	24	30.3797
ANKRD26	0	genome.wustl.edu	37	10	27368089	27368089	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27368089	27368089	G	T	SNP	ANKRD26	ENST00000436985	human	ensembl	74_37	-1	known	missense	c.889	p.L297I	0.000	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Polyketide_synth_docking,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD26	HGNC	ENSG00000107890				77	0	0	61	33	35.1064
YME1L1	0	genome.wustl.edu	37	10	27411786	27411786	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27411786	27411786	G	T	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	missense	c.1390	p.L464I	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				100	0	0	52	27	34.1772
YME1L1	0	genome.wustl.edu	37	10	27411858	27411858	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27411858	27411858	A	C	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	missense	c.1318	p.L440V	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				105	0	0	91	7	7.14286
MASTL	0	genome.wustl.edu	37	10	27459259	27459259	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27459259	27459259	A	C	SNP	MASTL	ENST00000375940	human	ensembl	74_37	+1	known	missense	c.1371	p.K457N	0.979	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MASTL	HGNC	ENSG00000120539				60	0	0	52	29	35.8025
PTCHD3	0	genome.wustl.edu	37	10	27687698	27687698	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27687698	27687698	A	G	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.1829	p.V610A	0.001	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				107	1	0.925926	51	30	37.037
PTCHD3	0	genome.wustl.edu	37	10	27702138	27702138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27702138	27702138	C	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.1042	p.D348N	0.002	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				365	0	0	210	88	29.5302
PTCHD3	0	genome.wustl.edu	37	10	27702944	27702944	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	27702944	27702944	G	A	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.236	p.S79L	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				120	0	0	56	24	30
MKX	0	genome.wustl.edu	37	10	28023641	28023641	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	28023641	28023641	C	A	SNP	MKX	ENST00000375790	human	ensembl	74_37	-1	known	missense	c.582	p.E194D	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MKX	HGNC	ENSG00000150051				138	0	0	66	30	31.25
ARMC4	0	genome.wustl.edu	37	10	28196681	28196681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	28196681	28196681	G	A	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.2521	p.R841C	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				90	0	0	51	15	22.7273
ARMC4	0	genome.wustl.edu	37	10	28274087	28274087	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	28274087	28274087	C	A	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	nonsense	c.436	p.E146*	0.981	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				16	0	0	18	9	33.3333
WAC	0	genome.wustl.edu	37	10	28900756	28900756	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	28900756	28900756	A	C	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	silent	c.1342	p.R448	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787				157	0	0	83	38	31.405
WAC	0	genome.wustl.edu	37	10	28905110	28905110	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	28905110	28905110	G	T	SNP	WAC	ENST00000354911	human	ensembl	74_37	+1	known	missense	c.1565	p.R522I	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WAC	HGNC	ENSG00000095787				133	0	0	92	38	29.2308
ZMYND11	0	genome.wustl.edu	37	10	294869	294869	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	294869	294869	G	A	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	silent	c.1527	p.K509	0.997	NULL	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				45	0	0	24	21	46.6667
SVIL	0	genome.wustl.edu	37	10	29813568	29813568	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	29813568	29813568	C	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	nonsense	c.2419	p.E807*	1.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				255	0	0	109	54	33.1288
ZEB1	0	genome.wustl.edu	37	10	31809761	31809761	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	31809761	31809761	A	G	SNP	ZEB1	ENST00000361642	human	ensembl	74_37	+1	known	missense	c.1501	p.T501A	0.681	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB1	HGNC	ENSG00000148516				109	0	0	77	34	30.6306
KIF5B	0	genome.wustl.edu	37	10	32311856	32311856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	32311856	32311856	C	T	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	missense	c.1834	p.E612K	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				79	0	0	58	38	39.5833
KIF5B	0	genome.wustl.edu	37	10	32327109	32327109	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	32327109	32327109	G	T	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	missense	c.480	p.N160K	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759				87	0	0	52	15	22.3881
ENSG00000227253	0	genome.wustl.edu	37	10	32558113	32558113	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	32558113	32558113	G	T	SNP	ENSG00000227253	ENST00000415731	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-166N17.1	Clone_based_vega_gene	ENSG00000227253				21	0	0	10	5	33.3333
C10orf68	0	genome.wustl.edu	37	10	33000570	33000570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	33000570	33000570	A	C	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.402	p.E134D	0.002	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				69	0	0	36	17	32.0755
C10orf68	0	genome.wustl.edu	37	10	33143334	33143334	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	33143334	33143334	C	T	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.1949	p.S650L	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				34	0	0	25	14	35.8974
NRP1	0	genome.wustl.edu	37	10	33545355	33545355	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	33545355	33545355	G	A	SNP	NRP1	ENST00000265371	human	ensembl	74_37	-1	known	nonsense	c.703	p.R235*	0.982	pirsf_Neuropilin,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP1	HGNC	ENSG00000099250				119	0	0	80	35	30.4348
CREM	0	genome.wustl.edu	37	10	35467886	35467886	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	35467886	35467886	G	T	SNP	CREM	ENST00000395895	human	ensembl	74_37	+1	known	nonsense	c.385	p.E129*	1.000	pfam_Coactivator_CBP_pKID,pfscan_Coactivator_CBP_pKID,prints_Leuzip_CREB	pfam_bZIP,pfam_Coactivator_CBP_pKID,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREM	HGNC	ENSG00000095794				41	0	0	23	15	39.4737
CCNY	0	genome.wustl.edu	37	10	35842060	35842060	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	35842060	35842060	T	C	SNP	CCNY	ENST00000374704	human	ensembl	74_37	+1	known	silent	c.693	p.A231	0.261	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	pfam_Cyclin_N,pfam_Cyclin_PHO80-like,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_Y	-	no_errors	CCNY	HGNC	ENSG00000108100				118	0	0	58	32	35.5556
ANKRD30A	0	genome.wustl.edu	37	10	37422915	37422915	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	37422915	37422915	A	G	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.521	p.D174G	0.007	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				255	0	0	159	65	29.0179
ANKRD30A	0	genome.wustl.edu	37	10	37454065	37454065	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	37454065	37454065	A	C	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.1878	p.E626D	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				61	0	0	50	25	33.3333
ANKRD30A	0	genome.wustl.edu	37	10	37490200	37490200	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	37490200	37490200	T	C	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.2648	p.V883A	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				94	0	0	73	32	30.4762
ZNF248	0	genome.wustl.edu	37	10	38121547	38121547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	38121547	38121547	C	T	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	missense	c.736	p.E246K	0.993	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				110	1	0.900901	60	37	38.1443
ZNF248	0	genome.wustl.edu	37	10	38121740	38121740	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	38121740	38121740	C	A	SNP	ZNF248	ENST00000357328	human	ensembl	74_37	-1	known	missense	c.543	p.E181D	0.857	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF248	HGNC	ENSG00000198105				69	0	0	48	28	36.8421
SEPT7P9	0	genome.wustl.edu	37	10	38680932	38680932	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	38680932	38680932	A	C	SNP	SEPT7P9	ENST00000475691	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEPT7P9	HGNC	ENSG00000120555				21	0	0	17	4	19.0476
ZNF37BP	0	genome.wustl.edu	37	10	43014647	43014647	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	43014647	43014647	G	T	SNP	ZNF37BP	ENST00000452075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZNF37BP	HGNC	ENSG00000234420				15	0	0	10	4	28.5714
ZNF37BP	0	genome.wustl.edu	37	10	43015615	43015615	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	43015615	43015615	C	T	SNP	ZNF37BP	ENST00000452075	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	ZNF37BP	HGNC	ENSG00000234420				17	0	0	19	4	17.3913
BMS1	0	genome.wustl.edu	37	10	43316063	43316063	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	43316063	43316063	C	T	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	silent	c.2877	p.I959	0.623	pfam_BMS1_TSR1_C	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				106	0	0	62	24	27.907
RET	0	genome.wustl.edu	37	10	43608350	43608350	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	43608350	43608350	C	T	SNP	RET	ENST00000355710	human	ensembl	74_37	+1	known	silent	c.1698	p.P566	0.107	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731				85	0	0	32	7	17.9487
ZNF239	0	genome.wustl.edu	37	10	44052344	44052344	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	44052344	44052344	C	T	SNP	ZNF239	ENST00000306006	human	ensembl	74_37	-1	known	missense	c.1184	p.R395K	0.981	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793				99	0	0	46	31	40.2597
ZNF239	0	genome.wustl.edu	37	10	44053445	44053445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	44053445	44053445	G	A	SNP	ZNF239	ENST00000306006	human	ensembl	74_37	-1	known	missense	c.83	p.S28F	0.018	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF239	HGNC	ENSG00000196793				120	0	0	66	31	31.9588
DIP2C	0	genome.wustl.edu	37	10	460034	460034	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	460034	460034	C	T	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	silent	c.876	p.P292	0.586	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				117	0	0	52	20	27.7778
ZFAND4	0	genome.wustl.edu	37	10	46121766	46121766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	46121766	46121766	A	G	SNP	ZFAND4	ENST00000344646	human	ensembl	74_37	-1	known	missense	c.1505	p.L502P	0.001	NULL	pfam_Ubiquitin_dom,pfam_Znf_AN1,smart_Ubiquitin_dom,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	ZFAND4	HGNC	ENSG00000172671				170	0	0	97	53	35.3333
GDF2	0	genome.wustl.edu	37	10	48414100	48414100	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	48414100	48414100	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	silent	c.768	p.V256	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802				98	0	0	37	30	44.7761
FRMPD2	0	genome.wustl.edu	37	10	49444554	49444554	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	49444554	49444554	T	C	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.964	p.M322V	0.335	NULL	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				97	0	0	62	25	28.7356
SLC18A3	0	genome.wustl.edu	37	10	50819126	50819126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	50819126	50819126	C	T	SNP	SLC18A3	ENST00000374115	human	ensembl	74_37	+1	known	missense	c.340	p.R114C	0.122	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A3	HGNC	ENSG00000187714				124	0	0	73	28	27.7228
CHAT	0	genome.wustl.edu	37	10	50830170	50830170	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	50830170	50830170	A	G	SNP	CHAT	ENST00000337653	human	ensembl	74_37	+1	known	silent	c.726	p.V242	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CHAT	HGNC	ENSG00000070748				218	0	0	108	48	30.7692
OGDHL	0	genome.wustl.edu	37	10	50951941	50951941	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	50951941	50951941	C	T	SNP	OGDHL	ENST00000496884	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	OGDHL	HGNC	ENSG00000197444				29	0	0	11	7	38.8889
OGDHL	0	genome.wustl.edu	37	10	50953530	50953530	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	50953530	50953530	G	A	SNP	OGDHL	ENST00000374103	human	ensembl	74_37	-1	known	missense	c.1489	p.R497W	1.000	pfam_DH_E1,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	pfam_DH_E1,pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd,pirsf_2oxoglutarate_DH_E1,tigrfam_2oxoglutarate_DH_E1	-	no_errors	OGDHL	HGNC	ENSG00000197444				101	0	0	43	16	27.1186
AGAP7	0	genome.wustl.edu	37	10	51464802	51464802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	51464802	51464802	G	A	SNP	AGAP7	ENST00000374095	human	ensembl	74_37	-1	known	missense	c.1654	p.L552F	0.998	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169				125	0	0	58	18	23.6842
MSMB	0	genome.wustl.edu	37	10	51562273	51562273	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	51562273	51562273	T	C	SNP	MSMB	ENST00000358559	human	ensembl	74_37	+1	known	missense	c.218	p.V73A	0.000	pfam_PSP94	pfam_PSP94	-	no_errors	MSMB	HGNC	ENSG00000138294				322	0	0	187	95	33.6879
FAM21A	0	genome.wustl.edu	37	10	51829368	51829368	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	51829368	51829368	A	C	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.188	p.K63T	1.000	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290				164	0	0	110	54	32.9268
SGMS1	0	genome.wustl.edu	37	10	52103662	52103662	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	52103662	52103662	G	A	SNP	SGMS1	ENST00000361781	human	ensembl	74_37	-1	known	silent	c.213	p.H71	0.996	superfamily_SAM/pointed	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964				107	0	0	59	25	29.7619
AKR1C4	0	genome.wustl.edu	37	10	5242274	5242274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	5242274	5242274	G	A	SNP	AKR1C4	ENST00000263126	human	ensembl	74_37	+1	known	missense	c.215	p.G72D	0.993	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C4	HGNC	ENSG00000198610				140	0	0	98	42	30
PRKG1	0	genome.wustl.edu	37	10	52912940	52912940	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	52912940	52912940	A	C	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.328	p.K110Q	1.000	pirsf_cGMP-dependent_protein_kinase,superfamily_cNMP-bd-like	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				150	0	0	102	52	33.7662
CSTF2T	0	genome.wustl.edu	37	10	53458833	53458833	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	53458833	53458833	T	G	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	silent	c.477	p.R159	0.996	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				252	0	0	146	72	33.0275
PCDH15	0	genome.wustl.edu	37	10	55566762	55566762	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	55566762	55566762	G	A	SNP	PCDH15	ENST00000414778	human	ensembl	74_37	-1	known	silent	c.4623	p.N1541	0.798	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				83	0	0	74	27	26.7327
PCDH15	0	genome.wustl.edu	37	10	55569095	55569095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	55569095	55569095	C	T	SNP	PCDH15	ENST00000395445	human	ensembl	74_37	-1	novel	missense	c.4715	p.R1572K	0.407	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				74	0	0	51	32	38.5542
PCDH15	0	genome.wustl.edu	37	10	55569225	55569225	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	55569225	55569225	T	G	SNP	PCDH15	ENST00000395445	human	ensembl	74_37	-1	novel	missense	c.4585	p.K1529Q	0.983	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				171	0	0	140	77	35.4839
PCDH15	0	genome.wustl.edu	37	10	55582450	55582450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	55582450	55582450	C	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.5036	p.R1679K	0.026	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				124	0	0	90	40	30.7692
PCDH15	0	genome.wustl.edu	37	10	55700682	55700682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	55700682	55700682	G	T	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.3176	p.S1059Y	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				75	0	0	48	17	26.1538
FAM208B	0	genome.wustl.edu	37	10	5784301	5784301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	5784301	5784301	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.2569	p.E857K	0.006	pfam_DUF3715	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				174	0	0	107	51	32.2785
FAM208B	0	genome.wustl.edu	37	10	5791054	5791054	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	5791054	5791054	G	A	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	silent	c.5670	p.E1890	0.004	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				60	0	0	40	14	25.9259
ANKRD16	0	genome.wustl.edu	37	10	5922312	5922312	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	5922312	5922312	G	T	SNP	ANKRD16	ENST00000380092	human	ensembl	74_37	-1	known	missense	c.877	p.L293I	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD16	HGNC	ENSG00000134461				25	0	0	22	10	31.25
IL15RA	0	genome.wustl.edu	37	10	5994867	5994867	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	5994867	5994867	G	T	SNP	IL15RA	ENST00000379972	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IL15RA	HGNC	ENSG00000134470				8	0	0	3	4	57.1429
BICC1	0	genome.wustl.edu	37	10	60548181	60548181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	60548181	60548181	C	T	SNP	BICC1	ENST00000373886	human	ensembl	74_37	+1	known	missense	c.598	p.R200W	1.000	smart_KH_dom	pfam_KH_dom_type_1,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_KH_dom,smart_SAM,pfscan_SAM,pfscan_KH_dom_type_1	-	no_errors	BICC1	HGNC	ENSG00000122870				40	0	0	38	12	24
PHYHIPL	0	genome.wustl.edu	37	10	61005148	61005148	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61005148	61005148	T	G	SNP	PHYHIPL	ENST00000373880	human	ensembl	74_37	+1	known	missense	c.928	p.F310V	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIPL	HGNC	ENSG00000165443				90	0	0	62	36	36.7347
PHYHIPL	0	genome.wustl.edu	37	10	61005308	61005308	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61005308	61005308	A	C	SNP	PHYHIPL	ENST00000373880	human	ensembl	74_37	+1	known	missense	c.1088	p.K363T	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIPL	HGNC	ENSG00000165443				137	0	0	83	35	29.661
FAM13C	0	genome.wustl.edu	37	10	61011369	61011369	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61011369	61011369	C	A	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	nonsense	c.1600	p.E534*	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				199	0	0	143	54	27.4112
FAM13C	0	genome.wustl.edu	37	10	61062583	61062583	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61062583	61062583	T	G	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.485	p.E162A	0.938	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541				118	0	0	73	33	31.1321
CCDC6	0	genome.wustl.edu	37	10	61554295	61554295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61554295	61554295	C	T	SNP	CCDC6	ENST00000263102	human	ensembl	74_37	-1	known	missense	c.1166	p.G389E	1.000	NULL	pfam_DUF2046	-	no_errors	CCDC6	HGNC	ENSG00000108091				105	0	0	65	33	33.6735
ANK3	0	genome.wustl.edu	37	10	61831943	61831943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61831943	61831943	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.8696	p.S2899F	0.998	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				75	0	0	57	22	27.8481
ANK3	0	genome.wustl.edu	37	10	61832027	61832027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61832027	61832027	G	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.8612	p.S2871L	0.997	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				114	0	0	67	44	39.6396
ANK3	0	genome.wustl.edu	37	10	61844546	61844546	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	61844546	61844546	C	T	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	silent	c.3888	p.G1296	1.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				84	0	0	69	25	26.5957
JMJD1C	0	genome.wustl.edu	37	10	64973807	64973807	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	64973807	64973807	T	G	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.2120	p.K707T	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				122	0	0	61	43	41.3462
SIRT1	0	genome.wustl.edu	37	10	69648688	69648688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	69648688	69648688	G	A	SNP	SIRT1	ENST00000212015	human	ensembl	74_37	+1	known	missense	c.596	p.R199Q	1.000	NULL	pfam_Sirtuin,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT1	HGNC	ENSG00000096717				107	0	0	78	29	27.1028
HERC4	0	genome.wustl.edu	37	10	69700806	69700806	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	69700806	69700806	A	C	SNP	HERC4	ENST00000395198	human	ensembl	74_37	-1	known	missense	c.2418	p.I806M	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC4	HGNC	ENSG00000148634				87	0	0	75	33	30.5556
MYPN	0	genome.wustl.edu	37	10	69905258	69905258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	69905258	69905258	G	A	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.1105	p.D369N	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				63	0	0	64	33	34.0206
MYPN	0	genome.wustl.edu	37	10	69948801	69948801	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	69948801	69948801	A	G	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.2843	p.D948G	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				96	0	0	56	24	30
HNRNPH3	0	genome.wustl.edu	37	10	70099299	70099299	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70099299	70099299	A	C	SNP	HNRNPH3	ENST00000265866	human	ensembl	74_37	+1	known	missense	c.626	p.N209T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH3	HGNC	ENSG00000096746				49	0	0	34	15	30.6122
DNA2	0	genome.wustl.edu	37	10	70182635	70182635	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70182635	70182635	T	G	SNP	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	missense	c.2479	p.T827P	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346				43	0	0	21	13	38.2353
TET1	0	genome.wustl.edu	37	10	70446447	70446447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70446447	70446447	C	T	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.5387	p.S1796L	0.011	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				88	0	0	41	27	39.7059
TET1	0	genome.wustl.edu	37	10	70451273	70451273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70451273	70451273	G	A	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.6113	p.R2038H	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				102	0	0	64	24	27.2727
CCAR1	0	genome.wustl.edu	37	10	70525798	70525798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70525798	70525798	G	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.2260	p.D754N	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				80	0	0	53	27	33.75
CCAR1	0	genome.wustl.edu	37	10	70550991	70550991	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70550991	70550991	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.3421	p.Q1141K	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				78	0	0	53	37	41.1111
STOX1	0	genome.wustl.edu	37	10	70644481	70644481	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70644481	70644481	A	C	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	missense	c.929	p.K310T	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				154	0	0	87	48	35.5556
STOX1	0	genome.wustl.edu	37	10	70645601	70645601	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70645601	70645601	A	C	SNP	STOX1	ENST00000298596	human	ensembl	74_37	+1	known	missense	c.2049	p.Q683H	0.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730				222	0	0	122	57	31.8436
KIAA1279	0	genome.wustl.edu	37	10	70776080	70776080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70776080	70776080	G	A	SNP	KIAA1279	ENST00000361983	human	ensembl	74_37	+1	known	missense	c.1774	p.E592K	0.560	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954				74	0	0	47	23	32.8571
SRGN	0	genome.wustl.edu	37	10	70864007	70864007	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70864007	70864007	A	G	SNP	SRGN	ENST00000462445	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SRGN	HGNC	ENSG00000122862				32	0	0	25	15	37.5
VPS26A	0	genome.wustl.edu	37	10	70922222	70922222	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	70922222	70922222	A	G	SNP	VPS26A	ENST00000263559	human	ensembl	74_37	+1	known	missense	c.612	p.I204M	1.000	pfam_VPS26	pfam_VPS26	-	no_errors	VPS26A	HGNC	ENSG00000122958				25	0	0	23	17	42.5
HK1	0	genome.wustl.edu	37	10	71144127	71144127	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	71144127	71144127	A	C	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	missense	c.1714	p.N572H	1.000	pfam_Hexokinase_N,prints_Hexokinase	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				253	0	0	105	66	38.5965
HK1	0	genome.wustl.edu	37	10	71152041	71152041	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	71152041	71152041	T	C	SNP	HK1	ENST00000448642	human	ensembl	74_37	+1	known	silent	c.2301	p.Y767	0.794	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK1	HGNC	ENSG00000156515				100	0	0	53	24	31.1688
COL13A1	0	genome.wustl.edu	37	10	71657243	71657243	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	71657243	71657243	A	C	SNP	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	missense	c.670	p.S224R	0.368	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				52	0	0	24	11	31.4286
ADAMTS14	0	genome.wustl.edu	37	10	72517751	72517751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	72517751	72517751	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.2980	p.R994W	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				144	0	0	63	46	42.2018
ADAMTS14	0	genome.wustl.edu	37	10	72520350	72520350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	72520350	72520350	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.3422	p.T1141M	0.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				130	0	0	69	21	23.3333
SLC29A3	0	genome.wustl.edu	37	10	73122094	73122094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	73122094	73122094	G	A	SNP	SLC29A3	ENST00000373189	human	ensembl	74_37	+1	known	missense	c.1157	p.R386Q	1.000	pfam_Eqnu_transpt,prints_Eqnu_transpt	pfam_Eqnu_transpt,prints_Eqnu_transpt	-	no_errors	SLC29A3	HGNC	ENSG00000198246				291	0	0	135	54	28.5714
SFMBT2	0	genome.wustl.edu	37	10	7326097	7326097	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7326097	7326097	C	A	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	missense	c.541	p.G181C	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879				124	0	0	65	41	38.6792
CDH23	0	genome.wustl.edu	37	10	73466770	73466770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	73466770	73466770	G	A	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.3085	p.V1029M	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				24	0	0	9	5	35.7143
CHST3	0	genome.wustl.edu	37	10	73767275	73767275	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	73767275	73767275	C	T	SNP	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	silent	c.486	p.F162	0.998	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863				37	0	0	18	10	35.7143
SPOCK2	0	genome.wustl.edu	37	10	73830147	73830147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	73830147	73830147	C	A	SNP	SPOCK2	ENST00000317376	human	ensembl	74_37	-1	known	missense	c.397	p.D133Y	1.000	NULL	pfam_SPARC/Testican_Ca-bd-dom,pfam_Thyroglobulin_1,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SPOCK2	HGNC	ENSG00000107742				62	0	0	35	14	28.5714
PLA2G12B	0	genome.wustl.edu	37	10	74714364	74714364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	74714364	74714364	G	A	SNP	PLA2G12B	ENST00000373032	human	ensembl	74_37	-1	known	missense	c.80	p.T27M	0.000	pfam_PLipase_A2_secretory_G12	pfam_PLipase_A2_secretory_G12,superfamily_PLipase_A2_dom	-	no_errors	PLA2G12B	HGNC	ENSG00000138308				225	1	0.442478	121	52	30.0578
P4HA1	0	genome.wustl.edu	37	10	74813221	74813221	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	74813221	74813221	G	A	SNP	P4HA1	ENST00000263556	human	ensembl	74_37	-1	known	silent	c.591	p.G197	0.986	NULL	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA1	HGNC	ENSG00000122884				175	0	0	89	63	41.4474
NUDT13	0	genome.wustl.edu	37	10	74890738	74890738	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	74890738	74890738	A	G	SNP	NUDT13	ENST00000488223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	NUDT13	HGNC	ENSG00000166321				33	0	0	8	9	52.9412
TTC18	0	genome.wustl.edu	37	10	75035326	75035326	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	75035326	75035326	A	C	SNP	TTC18	ENST00000310715	human	ensembl	74_37	-1	known	missense	c.2761	p.L921V	0.982	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC18	HGNC	ENSG00000156042				206	0	0	122	45	26.9461
AGAP5	0	genome.wustl.edu	37	10	75435151	75435151	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	75435151	75435151	A	C	SNP	AGAP5	ENST00000374094	human	ensembl	74_37	-1	known	missense	c.1267	p.F423V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP5	HGNC	ENSG00000172650				382	0	0	177	93	34.4444
ENSG00000242288	0	genome.wustl.edu	37	10	75488238	75488238	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	75488238	75488238	A	C	SNP	ENSG00000242288	ENST00000399449	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.921	-	-	-	no_errors	RP11-464F9.1	Clone_based_vega_gene	ENSG00000242288				47	0	0	45	27	37.5
CHCHD1	0	genome.wustl.edu	37	10	75542236	75542236	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	75542236	75542236	G	T	SNP	CHCHD1	ENST00000372837	human	ensembl	74_37	+1	known	nonsense	c.280	p.E94*	0.000	NULL	pfam_CHCH,superfamily_Cys_alpha_HP_mot_SF	-	no_errors	CHCHD1	HGNC	ENSG00000172586				77	0	0	42	24	36.3636
NDST2	0	genome.wustl.edu	37	10	75566834	75566834	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	75566834	75566834	G	T	SNP	NDST2	ENST00000463410	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDST2	HGNC	ENSG00000166507				366	1	0.27248	162	74	31.3559
KAT6B	0	genome.wustl.edu	37	10	76784845	76784845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	76784845	76784845	C	T	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.3502	p.P1168S	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				83	0	0	44	25	36.2319
KAT6B	0	genome.wustl.edu	37	10	76788342	76788342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	76788342	76788342	C	T	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.3760	p.R1254C	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				132	0	0	77	36	31.8584
ITIH5	0	genome.wustl.edu	37	10	7682734	7682734	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7682734	7682734	T	G	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.384	p.K128N	0.959	pfam_VIT,smart_VIT	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				122	0	0	78	37	32.1739
ITIH2	0	genome.wustl.edu	37	10	7769791	7769791	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7769791	7769791	G	T	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	missense	c.1279	p.G427C	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655				48	0	0	29	14	32.5581
ITIH2	0	genome.wustl.edu	37	10	7785224	7785224	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7785224	7785224	T	C	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	splice_site	c.2209+2	e17+2	1.000	-	-	-	no_errors	ITIH2	HGNC	ENSG00000151655				124	0	0	114	50	30.4878
KIN	0	genome.wustl.edu	37	10	7816807	7816807	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7816807	7816807	A	T	SNP	KIN	ENST00000379562	human	ensembl	74_37	-1	known	missense	c.655	p.S219T	0.004	NULL	pfam_DNA/RNA-bd_Kin17_cons_domain	-	no_errors	KIN	HGNC	ENSG00000151657				142	1	0.699301	68	36	34.6154
ATP5C1	0	genome.wustl.edu	37	10	7838094	7838094	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7838094	7838094	C	T	SNP	ATP5C1	ENST00000356708	human	ensembl	74_37	+1	known	nonsense	c.67	p.R23*	1.000	NULL	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	-	no_errors	ATP5C1	HGNC	ENSG00000165629				40	0	0	28	8	22.2222
ATP5C1	0	genome.wustl.edu	37	10	7844253	7844253	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7844253	7844253	G	A	SNP	ATP5C1	ENST00000356708	human	ensembl	74_37	+1	known	missense	c.658	p.D220N	1.000	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,tigrfam_ATPase_F1-cplx_gsu	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	-	no_errors	ATP5C1	HGNC	ENSG00000165629				81	0	0	45	25	35.7143
ATP5C1	0	genome.wustl.edu	37	10	7844768	7844768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7844768	7844768	G	A	SNP	ATP5C1	ENST00000356708	human	ensembl	74_37	+1	known	missense	c.841	p.A281T	1.000	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	pfam_ATPase_F1-cplx_gsu,superfamily_ATPase_F1_gsu_dom,prints_ATPase_F1-cplx_gsu,tigrfam_ATPase_F1-cplx_gsu	-	no_errors	ATP5C1	HGNC	ENSG00000165629				123	0	0	74	44	37.2881
KCNMA1	0	genome.wustl.edu	37	10	78651404	78651404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	78651404	78651404	G	A	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.3233	p.A1078V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				80	0	0	37	31	45.5882
TAF3	0	genome.wustl.edu	37	10	7866365	7866365	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	7866365	7866365	T	C	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	missense	c.251	p.I84T	1.000	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				186	0	0	100	64	39.0244
KCNMA1	0	genome.wustl.edu	37	10	79397114	79397114	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	79397114	79397114	A	G	SNP	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	missense	c.287	p.V96A	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				40	0	0	28	8	22.2222
POLR3A	0	genome.wustl.edu	37	10	79779000	79779000	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	79779000	79779000	G	T	SNP	POLR3A	ENST00000372371	human	ensembl	74_37	-1	known	missense	c.1209	p.F403L	0.998	pfam_RNA_pol_asu,smart_RNA_pol_N	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,smart_RNA_pol_N	-	no_errors	POLR3A	HGNC	ENSG00000148606				98	0	0	43	21	32.8125
GATA3	0	genome.wustl.edu	37	10	8115837	8115837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	8115837	8115837	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.1186	p.A396T	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				151	0	0	94	36	27.6923
SFTPD	0	genome.wustl.edu	37	10	81706344	81706344	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	81706344	81706344	C	A	SNP	SFTPD	ENST00000372292	human	ensembl	74_37	-1	known	missense	c.72	p.K24N	0.047	NULL	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661				56	0	0	20	22	52.381
TSPAN14	0	genome.wustl.edu	37	10	82275789	82275789	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	82275789	82275789	G	A	SNP	TSPAN14	ENST00000265450	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN14	HGNC	ENSG00000108219				21	0	0	3	5	62.5
NRG3	0	genome.wustl.edu	37	10	84118498	84118498	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	84118498	84118498	C	T	SNP	NRG3	ENST00000555784	human	ensembl	74_37	+1	known	nonsense	c.139	p.R47*	0.998	NULL	NULL	-	no_errors	NRG3	HGNC	ENSG00000185737				124	0	0	53	28	34.5679
NRG3	0	genome.wustl.edu	37	10	84745345	84745345	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	84745345	84745345	C	A	SNP	NRG3	ENST00000404547	human	ensembl	74_37	+1	known	missense	c.2147	p.S716Y	0.987	NULL	pfscan_EG-like_dom	-	no_errors	NRG3	HGNC	ENSG00000185737				144	0	0	87	31	26.2712
GHITM	0	genome.wustl.edu	37	10	85902490	85902490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	85902490	85902490	C	T	SNP	GHITM	ENST00000372134	human	ensembl	74_37	+1	known	missense	c.209	p.S70L	0.996	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GHITM	HGNC	ENSG00000165678				51	0	0	32	17	34.6939
RGR	0	genome.wustl.edu	37	10	86012656	86012656	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	86012656	86012656	C	T	SNP	RGR	ENST00000359452	human	ensembl	74_37	+1	known	silent	c.414	p.F138	0.857	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_RPE_GPCR,prints_GPCR_Rhodpsn	-	no_errors	RGR	HGNC	ENSG00000148604				175	0	0	86	24	21.8182
LARP4B	0	genome.wustl.edu	37	10	871710	871710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	871710	871710	C	T	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	missense	c.1226	p.R409Q	0.999	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				29	0	0	14	8	36.3636
LARP4B	0	genome.wustl.edu	37	10	875374	875374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	875374	875374	A	G	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	missense	c.1076	p.I359T	0.999	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				69	0	0	41	20	32.7869
ENSG00000271880	0	genome.wustl.edu	37	10	88769752	88769752	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	88769752	88769752	T	C	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.695	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				43	0	0	25	9	26.4706
PTEN	0	genome.wustl.edu	37	10	89693129	89693129	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	89693129	89693129	T	C	SNP	PTEN	ENST00000498703	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTEN	HGNC	ENSG00000171862				9	0	0	13	7	35
LIPJ	0	genome.wustl.edu	37	10	90353788	90353788	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	90353788	90353788	C	T	SNP	LIPJ	ENST00000371939	human	ensembl	74_37	+1	known	silent	c.216	p.G72	1.000	NULL	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPJ	HGNC	ENSG00000204022				109	1	0.909091	104	7	6.30631
LIPJ	0	genome.wustl.edu	37	10	90356076	90356076	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	90356076	90356076	G	T	SNP	LIPJ	ENST00000371939	human	ensembl	74_37	+1	known	missense	c.479	p.R160I	0.081	pfam_AB_hydrolase_1	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPJ	HGNC	ENSG00000204022				29	0	0	23	13	36.1111
LIPF	0	genome.wustl.edu	37	10	90427119	90427119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	90427119	90427119	G	A	SNP	LIPF	ENST00000394375	human	ensembl	74_37	+1	known	missense	c.95	p.G32E	0.194	NULL	pfam_AB_hydrolase_lipase,pfam_AB_hydrolase_1	-	no_errors	LIPF	HGNC	ENSG00000182333				94	0	0	47	24	33.8028
ANKRD22	0	genome.wustl.edu	37	10	90582738	90582738	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	90582738	90582738	T	G	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	missense	c.536	p.K179T	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				150	0	0	119	59	33.1461
LARP4B	0	genome.wustl.edu	37	10	910209	910209	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	910209	910209	A	G	SNP	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	missense	c.143	p.V48A	0.998	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				84	0	0	47	24	33.8028
IFIT2	0	genome.wustl.edu	37	10	91066464	91066464	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	91066464	91066464	C	T	SNP	IFIT2	ENST00000371826	human	ensembl	74_37	+1	known	missense	c.751	p.R251C	0.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT2	HGNC	ENSG00000119922				140	0	0	71	34	32.381
IFIT3	0	genome.wustl.edu	37	10	91099660	91099660	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	91099660	91099660	T	G	SNP	IFIT3	ENST00000371811	human	ensembl	74_37	+1	known	missense	c.1248	p.N416K	0.129	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT3	HGNC	ENSG00000119917				103	0	0	59	21	26.25
KIF20B	0	genome.wustl.edu	37	10	91484801	91484801	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	91484801	91484801	G	A	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	silent	c.1887	p.E629	0.071	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				96	0	0	58	31	34.8315
KIF20B	0	genome.wustl.edu	37	10	91498280	91498280	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	91498280	91498280	G	T	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	nonsense	c.3772	p.E1258*	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				57	0	0	59	24	28.9157
KIF20B	0	genome.wustl.edu	37	10	91528597	91528597	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	91528597	91528597	A	C	SNP	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	missense	c.5284	p.K1762Q	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				65	0	0	57	30	34.4828
ANKRD1	0	genome.wustl.edu	37	10	92675935	92675935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	92675935	92675935	C	T	SNP	ANKRD1	ENST00000371697	human	ensembl	74_37	-1	known	missense	c.644	p.R215Q	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD1	HGNC	ENSG00000148677				57	0	0	39	16	29.0909
BTAF1	0	genome.wustl.edu	37	10	93786976	93786976	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	93786976	93786976	G	A	SNP	BTAF1	ENST00000265990	human	ensembl	74_37	+1	known	silent	c.5325	p.A1775	0.995	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DUF3535,pfam_SNF2_N,pfam_HEAT,pfam_Helicase_C,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	BTAF1	HGNC	ENSG00000095564				136	0	0	103	58	36.0248
IDE	0	genome.wustl.edu	37	10	94215362	94215362	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	94215362	94215362	T	G	SNP	IDE	ENST00000265986	human	ensembl	74_37	-1	known	missense	c.2935	p.N979H	1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				77	0	0	59	25	29.7619
CYP26C1	0	genome.wustl.edu	37	10	94824234	94824234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	94824234	94824234	G	A	SNP	CYP26C1	ENST00000285949	human	ensembl	74_37	+1	known	missense	c.802	p.D268N	0.134	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP26C1	HGNC	ENSG00000187553				107	0	0	57	17	22.973
CYP26A1	0	genome.wustl.edu	37	10	94836943	94836943	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	94836943	94836943	T	C	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	missense	c.1376	p.L459P	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596				64	0	0	51	24	32
MYOF	0	genome.wustl.edu	37	10	95161176	95161176	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95161176	95161176	C	A	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.1116	p.Q372H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119				140	0	0	83	34	29.0598
FFAR4	0	genome.wustl.edu	37	10	95335855	95335855	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95335855	95335855	C	T	SNP	FFAR4	ENST00000371483	human	ensembl	74_37	+1	known	missense	c.575	p.S192L	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	FFAR4	HGNC	ENSG00000186188				192	0	0	105	44	29.5302
FRA10AC1	0	genome.wustl.edu	37	10	95445100	95445100	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95445100	95445100	T	C	SNP	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	silent	c.528	p.G176	1.000	pfam_Folate-sensitive_fs_Fra10Ac1	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690				116	0	0	89	47	34.5588
FRA10AC1	0	genome.wustl.edu	37	10	95447191	95447191	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95447191	95447191	G	A	SNP	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	nonsense	c.481	p.R161*	1.000	pfam_Folate-sensitive_fs_Fra10Ac1	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690				17	0	0	11	8	42.1053
LGI1	0	genome.wustl.edu	37	10	95556817	95556817	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95556817	95556817	C	T	SNP	LGI1	ENST00000371418	human	ensembl	74_37	+1	known	nonsense	c.931	p.R311*	0.997	pfam_EPTP,superfamily_WD40_repeat_dom	pfam_EPTP,pfam_Leu-rich_rpt,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI1	HGNC	ENSG00000108231				117	0	0	68	31	31.3131
PIPSL	0	genome.wustl.edu	37	10	95720561	95720561	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95720561	95720561	G	A	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.004	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764				98	0	0	57	30	34.4828
PLCE1	0	genome.wustl.edu	37	10	95791016	95791016	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	95791016	95791016	G	A	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.213	p.K71	0.002	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				116	0	0	98	6	5.76923
NOC3L	0	genome.wustl.edu	37	10	96097537	96097537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	96097537	96097537	C	T	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	missense	c.2186	p.R729Q	1.000	pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145				99	0	0	65	31	32.2917
NOC3L	0	genome.wustl.edu	37	10	96099593	96099593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	96099593	96099593	C	T	SNP	NOC3L	ENST00000371350	human	ensembl	74_37	-1	known	missense	c.1865	p.R622Q	1.000	pfam_CCAAT-binding_factor,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	pfam_CCAAT-binding_factor,pfam_NOC3p,superfamily_ARM-type_fold,pirsf_Nucleolar_cplx-assoc_3	-	no_errors	NOC3L	HGNC	ENSG00000173145				90	0	0	59	15	20.2703
CYP2C8	0	genome.wustl.edu	37	10	96796963	96796963	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	96796963	96796963	C	A	SNP	CYP2C8	ENST00000371270	human	ensembl	74_37	-1	known	missense	c.1395	p.K465N	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115				51	0	0	27	14	34.1463
CYP2C8	0	genome.wustl.edu	37	10	96829106	96829106	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	96829106	96829106	T	G	SNP	CYP2C8	ENST00000371270	human	ensembl	74_37	-1	known	silent	c.54	p.S18	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2C8	HGNC	ENSG00000138115				82	0	0	53	33	38.3721
ENTPD1-AS1	0	genome.wustl.edu	37	10	97779216	97779216	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	97779216	97779216	C	T	SNP	ENTPD1-AS1	ENST00000458228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ENTPD1-AS1	HGNC	ENSG00000226688				26	0	0	36	12	25
ENTPD1-AS1	0	genome.wustl.edu	37	10	97779620	97779620	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	97779620	97779620	A	G	SNP	ENTPD1-AS1	ENST00000458228	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ENTPD1-AS1	HGNC	ENSG00000226688				105	0	0	64	36	36
ZNF518A	0	genome.wustl.edu	37	10	97916956	97916956	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	97916956	97916956	G	T	SNP	ZNF518A	ENST00000478086	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				26	0	0	17	9	34.6154
ZNF518A	0	genome.wustl.edu	37	10	97918860	97918860	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	97918860	97918860	A	C	SNP	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				58	0	0	56	22	28.2051
TM9SF3	0	genome.wustl.edu	37	10	98321841	98321841	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98321841	98321841	T	G	SNP	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	missense	c.476	p.K159T	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				26	0	0	24	15	38.4615
PIK3AP1	0	genome.wustl.edu	37	10	98376434	98376434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98376434	98376434	C	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	missense	c.1976	p.R659Q	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				159	0	0	83	36	30.2521
PIK3AP1	0	genome.wustl.edu	37	10	98408569	98408569	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98408569	98408569	C	T	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	silent	c.1032	p.A344	0.001	superfamily_Ankyrin_rpt-contain_dom	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				56	0	0	31	8	20.5128
C10orf12	0	genome.wustl.edu	37	10	98743206	98743206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98743206	98743206	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.2059	p.E687K	0.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				135	0	0	69	31	31
C10orf12	0	genome.wustl.edu	37	10	98744567	98744567	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98744567	98744567	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	silent	c.3420	p.T1140	0.002	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				66	0	0	52	26	33.3333
SLIT1	0	genome.wustl.edu	37	10	98764578	98764578	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	98764578	98764578	G	T	SNP	SLIT1	ENST00000266058	human	ensembl	74_37	-1	known	silent	c.3582	p.V1194	0.926	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_EG-like_dom,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT1	HGNC	ENSG00000187122				65	0	0	34	16	32
MMS19	0	genome.wustl.edu	37	10	99223673	99223673	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	99223673	99223673	A	C	SNP	MMS19	ENST00000370782	human	ensembl	74_37	-1	known	nonsense	c.1854	p.Y618*	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_C,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229				30	0	0	10	5	33.3333
MMS19	0	genome.wustl.edu	37	10	99225597	99225597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	99225597	99225597	G	A	SNP	MMS19	ENST00000370782	human	ensembl	74_37	-1	known	missense	c.1721	p.P574L	1.000	superfamily_ARM-type_fold	pfam_Tscrpt_C,superfamily_ARM-type_fold	-	no_errors	MMS19	HGNC	ENSG00000155229				151	0	0	97	36	27.0677
CRTAC1	0	genome.wustl.edu	37	10	99655723	99655723	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	99655723	99655723	G	A	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	silent	c.1236	p.F412	0.999	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				92	0	0	46	18	28.125
R3HCC1L	0	genome.wustl.edu	37	10	99991421	99991421	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	10	99991421	99991421	T	C	SNP	R3HCC1L	ENST00000370584	human	ensembl	74_37	+1	known	silent	c.1938	p.L646	0.967	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024				122	0	0	69	43	38.3929
PGR	0	genome.wustl.edu	37	11	100922293	100922293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	100922293	100922293	C	T	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.2219	p.R740Q	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				78	0	0	61	28	31.4607
MUC6	0	genome.wustl.edu	37	11	1016585	1016585	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1016585	1016585	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.6216	p.S2072R	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				653	1	0.152905	286	82	22.2826
KIAA1377	0	genome.wustl.edu	37	11	101832555	101832555	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	101832555	101832555	A	C	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	missense	c.789	p.E263D	0.913	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				62	0	0	47	15	24.1935
KIAA1377	0	genome.wustl.edu	37	11	101863564	101863564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	101863564	101863564	A	G	SNP	KIAA1377	ENST00000263468	human	ensembl	74_37	+1	known	missense	c.3300	p.I1100M	0.995	NULL	NULL	-	no_errors	KIAA1377	HGNC	ENSG00000110318				14	0	0	25	12	32.4324
MMP8	0	genome.wustl.edu	37	11	102592161	102592161	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	102592161	102592161	G	A	SNP	MMP8	ENST00000236826	human	ensembl	74_37	-1	known	missense	c.593	p.A198V	0.956	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP8	HGNC	ENSG00000118113				78	0	0	56	11	16.4179
MUC6	0	genome.wustl.edu	37	11	1026380	1026380	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1026380	1026380	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.2493	p.F831L	0.603	smart_VWC_out	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				35	0	0	20	6	23.0769
MMP10	0	genome.wustl.edu	37	11	102650413	102650413	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	102650413	102650413	T	C	SNP	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	missense	c.169	p.N57D	0.000	pirsf_Pept_M10A_Metazoans,pfam_Peptidoglycan-bd-like,superfamily_Peptidoglycan-bd-like	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670				47	0	0	43	19	30.6452
MUC6	0	genome.wustl.edu	37	11	1027310	1027310	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1027310	1027310	A	G	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.2189	p.F730S	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				327	0	0	84	72	46.1538
MMP12	0	genome.wustl.edu	37	11	102736644	102736644	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	102736644	102736644	G	T	SNP	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				34	0	0	35	3	7.89474
MUC6	0	genome.wustl.edu	37	11	1027763	1027763	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1027763	1027763	C	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.1903	p.A635T	0.937	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				26	0	0	18	5	21.7391
DYNC2H1	0	genome.wustl.edu	37	11	102986023	102986023	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	102986023	102986023	G	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.620	p.R207I	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				8	0	0	3	5	62.5
DYNC2H1	0	genome.wustl.edu	37	11	103070011	103070011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	103070011	103070011	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.7894	p.E2632K	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				38	0	0	16	13	44.8276
DYNC2H1	0	genome.wustl.edu	37	11	103086472	103086472	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	103086472	103086472	A	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.8717	p.E2906A	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				19	0	0	11	10	47.619
CARD18	0	genome.wustl.edu	37	11	105009778	105009778	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	105009778	105009778	A	C	SNP	CARD18	ENST00000530950	human	ensembl	74_37	-1	known	missense	c.35	p.I12S	0.003	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD18	HGNC	ENSG00000255501				107	0	0	61	20	24.6914
GRIA4	0	genome.wustl.edu	37	11	105732782	105732782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	105732782	105732782	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				84	0	0	60	31	34.0659
GUCY1A2	0	genome.wustl.edu	37	11	106810861	106810861	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	106810861	106810861	G	T	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.531	p.F177L	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				84	0	0	74	30	28.8462
GUCY1A2	0	genome.wustl.edu	37	11	106888540	106888540	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	106888540	106888540	C	T	SNP	GUCY1A2	ENST00000282249	human	ensembl	74_37	-1	known	missense	c.242	p.R81H	1.000	NULL	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A2	HGNC	ENSG00000152402				10	0	0	7	5	41.6667
CTR9	0	genome.wustl.edu	37	11	10789639	10789639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	10789639	10789639	C	T	SNP	CTR9	ENST00000361367	human	ensembl	74_37	+1	known	missense	c.1891	p.R631C	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CTR9	HGNC	ENSG00000198730				123	0	0	58	25	30.1205
CUL5	0	genome.wustl.edu	37	11	107969212	107969212	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	107969212	107969212	G	T	SNP	CUL5	ENST00000393094	human	ensembl	74_37	+1	known	nonsense	c.2104	p.E702*	1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL5	HGNC	ENSG00000166266				69	0	0	59	37	38.5417
ATM	0	genome.wustl.edu	37	11	108114687	108114687	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108114687	108114687	C	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.504	p.F168L	0.325	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				15	0	0	8	3	27.2727
ATM	0	genome.wustl.edu	37	11	108138042	108138042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108138042	108138042	G	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.2611	p.E871K	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				76	0	0	37	22	37.2881
ATM	0	genome.wustl.edu	37	11	108203492	108203492	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108203492	108203492	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	nonsense	c.7792	p.R2598*	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				38	0	0	26	9	25.7143
ATM	0	genome.wustl.edu	37	11	108213967	108213967	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108213967	108213967	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	nonsense	c.8287	p.R2763*	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				183	0	0	148	41	21.6931
ATM	0	genome.wustl.edu	37	11	108216486	108216486	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108216486	108216486	C	A	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.8435	p.S2812Y	0.979	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				140	0	0	88	57	39.3103
DDX10	0	genome.wustl.edu	37	11	108593962	108593962	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	108593962	108593962	G	T	SNP	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	nonsense	c.1738	p.E580*	0.354	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105				49	0	0	34	16	32
ZC3H12C	0	genome.wustl.edu	37	11	110007958	110007958	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	110007958	110007958	G	T	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	nonsense	c.592	p.E198*	1.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				45	0	0	38	12	24
ZC3H12C	0	genome.wustl.edu	37	11	110035304	110035304	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	110035304	110035304	A	C	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	missense	c.1494	p.Q498H	0.890	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289				109	0	0	57	32	35.9551
FDX1	0	genome.wustl.edu	37	11	110333089	110333089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	110333089	110333089	G	A	SNP	FDX1	ENST00000260270	human	ensembl	74_37	+1	known	missense	c.452	p.G151D	1.000	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	pfam_2Fe-2S_ferredoxin-type,superfamily_2Fe-2S_ferredoxin-type,pfscan_2Fe-2S_ferredoxin-type,prints_Adrenodoxin	-	no_errors	FDX1	HGNC	ENSG00000137714				89	0	0	29	19	39.5833
ARHGAP20	0	genome.wustl.edu	37	11	110451042	110451042	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	110451042	110451042	A	C	SNP	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	silent	c.2628	p.G876	0.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				178	0	0	107	59	35.5422
C11orf88	0	genome.wustl.edu	37	11	111404477	111404477	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	111404477	111404477	A	G	SNP	C11orf88	ENST00000529167	human	ensembl	74_37	+1	known	missense	c.427	p.T143A	0.875	NULL	NULL	-	no_errors	C11orf88	HGNC	ENSG00000183644				63	0	0	55	23	29.4872
PPP2R1B	0	genome.wustl.edu	37	11	111624289	111624289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	111624289	111624289	C	T	SNP	PPP2R1B	ENST00000311129	human	ensembl	74_37	-1	known	missense	c.1042	p.D348N	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713				41	0	0	24	13	35.1351
FDXACB1	0	genome.wustl.edu	37	11	111746444	111746444	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	111746444	111746444	G	A	SNP	FDXACB1	ENST00000260257	human	ensembl	74_37	-1	known	silent	c.1077	p.I359	0.973	NULL	pfam_DUF2431,pfam_PheS_beta_Fdx_antiC-bd,superfamily_PheS_beta_Fdx_antiC-bd,smart_PheS_beta_Fdx_antiC-bd	-	no_errors	FDXACB1	HGNC	ENSG00000255561				222	0	0	95	63	39.8734
BCO2	0	genome.wustl.edu	37	11	112064319	112064319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	112064319	112064319	G	A	SNP	BCO2	ENST00000357685	human	ensembl	74_37	+1	known	missense	c.416	p.R139Q	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCO2	HGNC	ENSG00000197580				56	0	0	34	17	33.3333
TTC12	0	genome.wustl.edu	37	11	113233147	113233147	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113233147	113233147	A	G	SNP	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	missense	c.1639	p.T547A	0.916	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292				102	0	0	72	26	26.5306
ZW10	0	genome.wustl.edu	37	11	113614686	113614686	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113614686	113614686	A	C	SNP	ZW10	ENST00000200135	human	ensembl	74_37	-1	known	missense	c.1349	p.V450G	0.010	pfam_RZZ-complex_Zw10	pfam_RZZ-complex_Zw10	-	no_errors	ZW10	HGNC	ENSG00000086827				118	1	0.840336	63	29	31.5217
CLDN25	0	genome.wustl.edu	37	11	113650908	113650908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113650908	113650908	G	A	SNP	CLDN25	ENST00000453129	human	ensembl	74_37	+1	known	missense	c.391	p.A131T	0.909	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN25	HGNC	ENSG00000228607				126	0	0	55	41	42.7083
ATF4P4	0	genome.wustl.edu	37	11	113661046	113661046	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113661046	113661046	G	A	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.887	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167				119	0	0	60	30	33.3333
USP28	0	genome.wustl.edu	37	11	113670038	113670038	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113670038	113670038	G	T	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.3158	p.S1053Y	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028				146	0	0	73	38	34.2342
CSNK2A3	0	genome.wustl.edu	37	11	11374429	11374429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	11374429	11374429	G	A	SNP	CSNK2A3	ENST00000528848	human	ensembl	74_37	-1	novel	missense	c.238	p.R80C	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A3	HGNC	ENSG00000254598				190	0	0	93	41	30.597
HTR3A	0	genome.wustl.edu	37	11	113846067	113846067	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	113846067	113846067	A	C	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.38	p.Q13P	0.000	tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				46	0	0	24	8	25
REXO2	0	genome.wustl.edu	37	11	114320615	114320615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	114320615	114320615	G	A	SNP	REXO2	ENST00000265881	human	ensembl	74_37	+1	known	missense	c.632	p.R211Q	1.000	superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	REXO2	HGNC	ENSG00000076043				97	0	0	72	49	40.4959
CADM1	0	genome.wustl.edu	37	11	115061632	115061632	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	115061632	115061632	C	A	SNP	CADM1	ENST00000331581	human	ensembl	74_37	-1	novel	nonsense	c.1141	p.E381*	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				26	0	0	11	8	42.1053
CADM1	0	genome.wustl.edu	37	11	115085387	115085387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	115085387	115085387	C	T	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.935	p.R312H	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				121	0	0	69	37	34.9057
APOA5	0	genome.wustl.edu	37	11	116661297	116661297	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	116661297	116661297	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	silent	c.648	p.H216	0.042	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243				38	0	0	20	8	28.5714
APOA4	0	genome.wustl.edu	37	11	116692535	116692535	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	116692535	116692535	A	C	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.239	p.L80R	0.998	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				198	0	0	73	35	32.4074
SIDT2	0	genome.wustl.edu	37	11	117066741	117066741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117066741	117066741	G	A	SNP	SIDT2	ENST00000324225	human	ensembl	74_37	+1	known	missense	c.2458	p.D820N	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577				183	0	0	97	34	25.9542
CEP164	0	genome.wustl.edu	37	11	117278689	117278689	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117278689	117278689	A	C	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	missense	c.3550	p.N1184H	0.053	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274				22	0	0	13	7	35
DSCAML1	0	genome.wustl.edu	37	11	117307845	117307845	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117307845	117307845	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.4893	p.Y1631	0.997	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				118	0	0	51	17	25
DSCAML1	0	genome.wustl.edu	37	11	117375680	117375680	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117375680	117375680	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.2321	p.D774G	0.995	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				117	0	0	53	15	22.0588
DSCAML1	0	genome.wustl.edu	37	11	117387316	117387316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117387316	117387316	C	T	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.1829	p.R610H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				65	0	0	32	9	21.9512
ENSG00000254844	0	genome.wustl.edu	37	11	117691317	117691317	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117691317	117691317	C	T	SNP	ENSG00000254844	ENST00000531850	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-728F11.3	Clone_based_vega_gene	ENSG00000254844				50	0	0	31	6	16.2162
TMPRSS13	0	genome.wustl.edu	37	11	117779398	117779398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	117779398	117779398	C	T	SNP	TMPRSS13	ENST00000445164	human	ensembl	74_37	-1	known	missense	c.1211	p.S404N	0.297	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_TMPRSS13,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SRCR,pfscan_Peptidase_S1	-	no_errors	TMPRSS13	HGNC	ENSG00000137747				9	0	0	9	6	40
SCN2B	0	genome.wustl.edu	37	11	118039303	118039303	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118039303	118039303	C	A	SNP	SCN2B	ENST00000278947	human	ensembl	74_37	-1	known	missense	c.234	p.E78D	1.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	SCN2B	HGNC	ENSG00000149575				198	0	0	92	36	28.125
AMICA1	0	genome.wustl.edu	37	11	118074145	118074145	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118074145	118074145	C	T	SNP	AMICA1	ENST00000356289	human	ensembl	74_37	-1	known	missense	c.770	p.R257Q	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	AMICA1	HGNC	ENSG00000160593				373	0	0	181	76	29.572
KMT2A	0	genome.wustl.edu	37	11	118352757	118352757	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118352757	118352757	A	C	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.3962	p.K1321T	0.998	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				79	0	0	35	27	43.5484
ARCN1	0	genome.wustl.edu	37	11	118452034	118452034	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118452034	118452034	G	A	SNP	ARCN1	ENST00000264028	human	ensembl	74_37	+1	known	missense	c.77	p.R26Q	1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139				192	0	0	111	50	31.0559
PHLDB1	0	genome.wustl.edu	37	11	118498939	118498939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118498939	118498939	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.1400	p.R467Q	0.976	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				188	0	0	92	32	25.8065
TREH	0	genome.wustl.edu	37	11	118529423	118529423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118529423	118529423	C	T	SNP	TREH	ENST00000264029	human	ensembl	74_37	-1	known	missense	c.1565	p.G522E	1.000	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like,prints_Glyco_hydro_37	-	no_errors	TREH	HGNC	ENSG00000118094				27	0	0	8	3	27.2727
BCL9L	0	genome.wustl.edu	37	11	118771988	118771988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118771988	118771988	C	T	SNP	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	missense	c.2464	p.A822T	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174				129	0	0	36	17	32.0755
SLC37A4	0	genome.wustl.edu	37	11	118895938	118895938	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118895938	118895938	A	G	SNP	SLC37A4	ENST00000357590	human	ensembl	74_37	-1	known	silent	c.1152	p.C384	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar_P_transporter	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar_P_transporter	-	no_errors	SLC37A4	HGNC	ENSG00000137700				43	0	0	27	11	28.9474
DPAGT1	0	genome.wustl.edu	37	11	118967732	118967732	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	118967732	118967732	G	A	SNP	DPAGT1	ENST00000354202	human	ensembl	74_37	-1	known	silent	c.1203	p.L401	0.998	NULL	pfam_Glycosyl_transferase_4	-	no_errors	DPAGT1	HGNC	ENSG00000172269				84	0	0	26	18	40.9091
MFRP	0	genome.wustl.edu	37	11	119216216	119216216	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	119216216	119216216	C	A	SNP	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	missense	c.555	p.K185N	0.943	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				108	0	0	43	15	25.8621
USP47	0	genome.wustl.edu	37	11	11971915	11971915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	11971915	11971915	C	T	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.3529	p.R1177C	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				59	0	0	34	17	33.3333
USP47	0	genome.wustl.edu	37	11	11971986	11971986	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	11971986	11971986	T	G	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.3600	p.I1200M	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242				94	0	0	64	36	36
ARHGEF12	0	genome.wustl.edu	37	11	120292551	120292551	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	120292551	120292551	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.281	p.R94Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				95	0	0	68	31	31.3131
ARHGEF12	0	genome.wustl.edu	37	11	120350997	120350997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	120350997	120350997	G	A	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.4038	p.M1346I	0.000	NULL	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914				144	1	0.689655	82	44	34.9206
TECTA	0	genome.wustl.edu	37	11	121000423	121000423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	121000423	121000423	C	T	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.2444	p.T815M	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				204	0	0	97	62	38.9937
SC5D	0	genome.wustl.edu	37	11	121174120	121174120	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	121174120	121174120	T	G	SNP	SC5D	ENST00000264027	human	ensembl	74_37	+1	known	missense	c.36	p.F12L	1.000	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	SC5D	HGNC	ENSG00000109929				86	0	0	88	36	29.0323
SORL1	0	genome.wustl.edu	37	11	121429396	121429396	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	121429396	121429396	G	T	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	silent	c.2760	p.V920	0.999	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				196	0	0	125	37	22.8395
SORL1	0	genome.wustl.edu	37	11	121478832	121478832	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	121478832	121478832	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.5186	p.R1729H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				80	0	0	42	19	31.1475
SORL1	0	genome.wustl.edu	37	11	121491794	121491794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	121491794	121491794	G	A	SNP	SORL1	ENST00000260197	human	ensembl	74_37	+1	known	missense	c.5911	p.D1971N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642				75	0	0	40	16	28.5714
MICAL2	0	genome.wustl.edu	37	11	12231140	12231140	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	12231140	12231140	T	C	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.686	p.L229P	1.000	prints_Rng_hydrolase-like	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				122	0	0	61	19	23.75
CLMP	0	genome.wustl.edu	37	11	122944366	122944366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	122944366	122944366	C	T	SNP	CLMP	ENST00000448775	human	ensembl	74_37	-1	known	missense	c.938	p.R313H	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD47_Vset,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CLMP	HGNC	ENSG00000166250				222	1	0.44843	98	51	34.2282
MICALCL	0	genome.wustl.edu	37	11	12315174	12315174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	12315174	12315174	C	T	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.196	p.R66W	0.000	NULL	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				261	0	0	176	55	23.8095
GRAMD1B	0	genome.wustl.edu	37	11	123477453	123477453	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	123477453	123477453	A	G	SNP	GRAMD1B	ENST00000322282	human	ensembl	74_37	+1	known	missense	c.1031	p.D344G	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1B	HGNC	ENSG00000023171				38	0	0	21	8	27.5862
OR8D4	0	genome.wustl.edu	37	11	123778058	123778058	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	123778058	123778058	G	T	SNP	OR8D4	ENST00000321355	human	ensembl	74_37	+1	known	missense	c.920	p.R307I	0.299	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D4	HGNC	ENSG00000181518				42	0	0	37	16	30.1887
PANX3	0	genome.wustl.edu	37	11	124489454	124489454	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	124489454	124489454	A	G	SNP	PANX3	ENST00000284288	human	ensembl	74_37	+1	known	missense	c.802	p.I268V	0.005	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX3	HGNC	ENSG00000154143				106	0	0	53	23	30.2632
HEPACAM	0	genome.wustl.edu	37	11	124793897	124793897	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	124793897	124793897	G	A	SNP	HEPACAM	ENST00000298251	human	ensembl	74_37	-1	known	missense	c.437	p.S146L	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	HEPACAM	HGNC	ENSG00000165478				22	0	0	20	3	13.0435
CCDC15	0	genome.wustl.edu	37	11	124858023	124858023	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	124858023	124858023	A	C	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.1901	p.K634T	0.001	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				92	0	0	66	32	32.6531
CCDC15	0	genome.wustl.edu	37	11	124863121	124863121	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	124863121	124863121	T	C	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	silent	c.2196	p.N732	0.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				13	0	0	17	4	19.0476
CCDC15	0	genome.wustl.edu	37	11	124908850	124908850	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	124908850	124908850	G	T	SNP	CCDC15	ENST00000344762	human	ensembl	74_37	+1	known	missense	c.2619	p.E873D	1.000	NULL	NULL	-	no_errors	CCDC15	HGNC	ENSG00000149548				118	0	0	104	40	27.7778
PKNOX2	0	genome.wustl.edu	37	11	125301169	125301169	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125301169	125301169	G	T	SNP	PKNOX2	ENST00000298282	human	ensembl	74_37	+1	known	nonsense	c.1300	p.E434*	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX2	HGNC	ENSG00000165495				62	0	0	22	9	29.0323
FEZ1	0	genome.wustl.edu	37	11	125315903	125315903	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125315903	125315903	C	T	SNP	FEZ1	ENST00000526507	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.964	-	-	-	no_errors	FEZ1	HGNC	ENSG00000149557				148	0	0	71	43	37.7193
PARVA	0	genome.wustl.edu	37	11	12535563	12535563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	12535563	12535563	A	G	SNP	PARVA	ENST00000334956	human	ensembl	74_37	+1	known	missense	c.938	p.N313S	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVA	HGNC	ENSG00000197702				47	0	0	27	15	35.7143
EI24	0	genome.wustl.edu	37	11	125451124	125451124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125451124	125451124	C	T	SNP	EI24	ENST00000278903	human	ensembl	74_37	+1	known	missense	c.691	p.R231W	1.000	NULL	NULL	-	no_errors	EI24	HGNC	ENSG00000149547				41	0	0	21	13	38.2353
STT3A	0	genome.wustl.edu	37	11	125488282	125488282	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125488282	125488282	C	A	SNP	STT3A	ENST00000392708	human	ensembl	74_37	+1	known	missense	c.1789	p.L597I	1.000	pfam_Oligo_trans_STT3	pfam_Oligo_trans_STT3	-	no_errors	STT3A	HGNC	ENSG00000134910				62	0	0	32	16	33.3333
CHEK1	0	genome.wustl.edu	37	11	125497713	125497713	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125497713	125497713	T	G	SNP	CHEK1	ENST00000438015	human	ensembl	74_37	+1	known	missense	c.277	p.F93V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554				102	0	0	64	20	23.8095
CHEK1	0	genome.wustl.edu	37	11	125505412	125505412	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125505412	125505412	C	T	SNP	CHEK1	ENST00000438015	human	ensembl	74_37	+1	known	silent	c.702	p.I234	0.266	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CHEK1	HGNC	ENSG00000149554				152	0	0	143	54	27.4112
PATE1	0	genome.wustl.edu	37	11	125617607	125617607	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125617607	125617607	T	G	SNP	PATE1	ENST00000305738	human	ensembl	74_37	+1	known	missense	c.137	p.V46G	0.340	NULL	NULL	-	no_errors	PATE1	HGNC	ENSG00000171053				153	0	0	60	31	34.0659
PUS3	0	genome.wustl.edu	37	11	125763722	125763722	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125763722	125763722	C	T	SNP	PUS3	ENST00000227474	human	ensembl	74_37	-1	known	silent	c.1404	p.T468	0.002	NULL	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS3	HGNC	ENSG00000110060				179	0	0	105	59	35.9756
PUS3	0	genome.wustl.edu	37	11	125763900	125763900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125763900	125763900	C	T	SNP	PUS3	ENST00000227474	human	ensembl	74_37	-1	known	missense	c.1226	p.R409H	1.000	NULL	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS3	HGNC	ENSG00000110060				230	0	0	123	58	32.0442
HYLS1	0	genome.wustl.edu	37	11	125769653	125769653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125769653	125769653	C	A	SNP	HYLS1	ENST00000356438	human	ensembl	74_37	+1	known	missense	c.390	p.D130E	1.000	NULL	NULL	-	no_errors	HYLS1	HGNC	ENSG00000198331				111	1	0.892857	58	41	41.4141
DDX25	0	genome.wustl.edu	37	11	125792754	125792754	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	125792754	125792754	A	C	SNP	DDX25	ENST00000263576	human	ensembl	74_37	+1	known	missense	c.1430	p.E477A	1.000	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX25	HGNC	ENSG00000109832				13	0	0	10	4	28.5714
RPUSD4	0	genome.wustl.edu	37	11	126074205	126074205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	126074205	126074205	C	T	SNP	RPUSD4	ENST00000298317	human	ensembl	74_37	-1	known	missense	c.815	p.R272Q	1.000	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD4	HGNC	ENSG00000165526				99	0	0	50	24	32.4324
FAM118B	0	genome.wustl.edu	37	11	126104933	126104933	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	126104933	126104933	G	A	SNP	FAM118B	ENST00000533050	human	ensembl	74_37	+1	known	missense	c.37	p.E13K	0.699	NULL	NULL	-	no_errors	FAM118B	HGNC	ENSG00000197798				49	0	0	27	11	28.9474
MUC5B	0	genome.wustl.edu	37	11	1268507	1268507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1268507	1268507	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.10406	p.T3469M	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				128	0	0	61	29	32.2222
MUC5B	0	genome.wustl.edu	37	11	1271226	1271226	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1271226	1271226	G	A	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.13125	p.T4375	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				238	0	0	101	56	35.6688
ARHGAP32	0	genome.wustl.edu	37	11	128844756	128844756	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	128844756	128844756	C	T	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.2294	p.G765E	1.000	NULL	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				71	0	0	44	27	38.0282
ARHGAP32	0	genome.wustl.edu	37	11	128936648	128936648	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	128936648	128936648	T	C	SNP	ARHGAP32	ENST00000310343	human	ensembl	74_37	-1	known	missense	c.605	p.D202G	0.998	pfam_Phox,superfamily_Phox	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Phox,smart_SH3_domain,smart_RhoGAP_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP32	HGNC	ENSG00000134909				50	0	0	27	10	27.027
ADAMTS8	0	genome.wustl.edu	37	11	130284622	130284622	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	130284622	130284622	C	A	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	missense	c.1370	p.G457V	1.000	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				104	0	0	60	24	28.5714
ADAMTS15	0	genome.wustl.edu	37	11	130319043	130319043	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	130319043	130319043	G	T	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	missense	c.175	p.A59S	0.384	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106				127	1	0.78125	65	36	35.6436
TOLLIP	0	genome.wustl.edu	37	11	1311585	1311585	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1311585	1311585	G	A	SNP	TOLLIP	ENST00000317204	human	ensembl	74_37	-1	known	missense	c.238	p.R80C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_CUE,pfam_C2_dom,superfamily_C2_dom,superfamily_UBA-like,smart_C2_dom,smart_CUE,pfscan_CUE	-	no_errors	TOLLIP	HGNC	ENSG00000078902				77	0	0	30	13	30.2326
ARNTL	0	genome.wustl.edu	37	11	13380010	13380010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	13380010	13380010	G	A	SNP	ARNTL	ENST00000403290	human	ensembl	74_37	+1	known	missense	c.251	p.R84H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL	HGNC	ENSG00000133794				222	0	0	136	57	29.5337
NCAPD3	0	genome.wustl.edu	37	11	134079276	134079276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	134079276	134079276	C	A	SNP	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	missense	c.663	p.K221N	0.998	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				72	0	0	37	20	35.0877
VPS26B	0	genome.wustl.edu	37	11	134095105	134095105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	134095105	134095105	A	G	SNP	VPS26B	ENST00000281187	human	ensembl	74_37	+1	known	missense	c.89	p.E30G	1.000	pfam_VPS26,superfamily_Ig_E-set	pfam_VPS26,superfamily_Ig_E-set	-	no_errors	VPS26B	HGNC	ENSG00000151502				71	0	0	23	18	43.9024
RRAS2	0	genome.wustl.edu	37	11	14300968	14300968	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14300968	14300968	T	G	SNP	RRAS2	ENST00000545643	human	ensembl	74_37	-1	known	missense	c.548	p.K183T	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RRAS2	HGNC	ENSG00000133818				107	0	0	68	33	32.6733
COPB1	0	genome.wustl.edu	37	11	14490365	14490365	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14490365	14490365	G	A	SNP	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	silent	c.2007	p.D669	1.000	pfam_Coatomer_bsu_C,pirsf_COPB1	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083				246	0	0	149	70	31.9635
PDE3B	0	genome.wustl.edu	37	11	14880774	14880774	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14880774	14880774	C	T	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	silent	c.2706	p.L902	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				74	0	0	38	18	32.1429
PDE3B	0	genome.wustl.edu	37	11	14891108	14891108	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14891108	14891108	A	C	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.3241	p.K1081Q	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				112	0	0	81	20	19.802
CYP2R1	0	genome.wustl.edu	37	11	14901790	14901790	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14901790	14901790	C	A	SNP	CYP2R1	ENST00000334636	human	ensembl	74_37	-1	known	nonsense	c.892	p.E298*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2R1	HGNC	ENSG00000186104				78	0	0	62	23	27.0588
CYP2R1	0	genome.wustl.edu	37	11	14907379	14907379	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	14907379	14907379	C	T	SNP	CYP2R1	ENST00000334636	human	ensembl	74_37	-1	known	missense	c.310	p.E104K	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2R1	HGNC	ENSG00000186104				77	0	0	57	29	33.7209
DUSP8	0	genome.wustl.edu	37	11	1578801	1578801	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	1578801	1578801	G	A	SNP	DUSP8	ENST00000331588	human	ensembl	74_37	-1	known	silent	c.825	p.F275	0.988	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP8	HGNC	ENSG00000184545				18	0	0	9	4	30.7692
SOX6	0	genome.wustl.edu	37	11	16119153	16119153	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	16119153	16119153	A	G	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	splice_site	c.978+2	e7+2	1.000	-	-	-	no_errors	SOX6	HGNC	ENSG00000110693				56	0	0	29	13	30.9524
SOX6	0	genome.wustl.edu	37	11	16208354	16208354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	16208354	16208354	T	C	SNP	SOX6	ENST00000352083	human	ensembl	74_37	-1	known	missense	c.683	p.D228G	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX6	HGNC	ENSG00000110693				239	0	0	125	47	27.3256
PLEKHA7	0	genome.wustl.edu	37	11	16824525	16824525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	16824525	16824525	C	A	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.2151	p.E717D	1.000	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				141	0	0	69	39	36.1111
PLEKHA7	0	genome.wustl.edu	37	11	16863173	16863173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	16863173	16863173	C	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.793	p.D265N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				130	0	0	72	32	30.7692
PLEKHA7	0	genome.wustl.edu	37	11	16892681	16892681	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	16892681	16892681	A	G	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	silent	c.270	p.F90	1.000	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689				66	0	0	34	15	30.6122
OR7E14P	0	genome.wustl.edu	37	11	17073756	17073756	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	17073756	17073756	A	G	SNP	OR7E14P	ENST00000530490	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.814	-	-	-	no_errors	OR7E14P	HGNC	ENSG00000184669				54	0	0	33	18	35.2941
PIK3C2A	0	genome.wustl.edu	37	11	17139172	17139172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	17139172	17139172	C	T	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.3082	p.E1028K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				100	0	0	59	35	37.234
PIK3C2A	0	genome.wustl.edu	37	11	17177086	17177086	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	17177086	17177086	G	A	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	nonsense	c.1156	p.R386*	0.963	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				82	0	0	52	21	28.7671
PIK3C2A	0	genome.wustl.edu	37	11	17190351	17190351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	17190351	17190351	G	A	SNP	PIK3C2A	ENST00000265970	human	ensembl	74_37	-1	known	missense	c.938	p.S313L	0.603	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2A	HGNC	ENSG00000011405				150	0	0	109	28	20.438
USH1C	0	genome.wustl.edu	37	11	17537820	17537820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	17537820	17537820	G	A	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	missense	c.1228	p.R410C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				31	0	0	17	3	15
TPH1	0	genome.wustl.edu	37	11	18042653	18042653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18042653	18042653	C	T	SNP	TPH1	ENST00000341556	human	ensembl	74_37	-1	known	missense	c.1220	p.S407N	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167				205	0	0	60	63	51.2195
TPH1	0	genome.wustl.edu	37	11	18057677	18057677	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18057677	18057677	T	C	SNP	TPH1	ENST00000341556	human	ensembl	74_37	-1	known	missense	c.130	p.N44D	1.000	pfam_ACT_dom,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH1	HGNC	ENSG00000129167				42	0	0	34	10	22.7273
MRGPRX3	0	genome.wustl.edu	37	11	18159568	18159568	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18159568	18159568	C	A	SNP	MRGPRX3	ENST00000396275	human	ensembl	74_37	+1	known	missense	c.819	p.F273L	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX3	HGNC	ENSG00000179826				112	0	0	63	31	32.9787
SAA2	0	genome.wustl.edu	37	11	18267004	18267004	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18267004	18267004	C	T	SNP	SAA2	ENST00000256733	human	ensembl	74_37	-1	known	missense	c.289	p.D97N	0.987	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A	pfam_Serum_amyloid_A,smart_Serum_amyloid_A,pirsf_Serum_amyloid_A,prints_Serum_amyloid_A	-	no_errors	SAA2	HGNC	ENSG00000134339				103	0	0	48	26	35.1351
HPS5	0	genome.wustl.edu	37	11	18309169	18309169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18309169	18309169	G	A	SNP	HPS5	ENST00000349215	human	ensembl	74_37	-1	known	missense	c.2630	p.S877L	0.402	pirsf_BLOC-2_complex_Hps5_subunit	superfamily_WD40_repeat_dom,pirsf_BLOC-2_complex_Hps5_subunit	-	no_errors	HPS5	HGNC	ENSG00000110756				96	0	0	60	25	29.4118
LDHA	0	genome.wustl.edu	37	11	18421014	18421014	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18421014	18421014	G	A	SNP	LDHA	ENST00000540430	human	ensembl	74_37	+1	known	missense	c.250	p.E84K	1.000	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHA	HGNC	ENSG00000134333				131	0	0	80	41	33.8843
TSG101	0	genome.wustl.edu	37	11	18536371	18536371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18536371	18536371	G	A	SNP	TSG101	ENST00000251968	human	ensembl	74_37	-1	known	missense	c.211	p.P71S	1.000	pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319				223	0	0	143	50	25.9067
SPTY2D1-AS1	0	genome.wustl.edu	37	11	18631601	18631601	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18631601	18631601	C	T	SNP	SPTY2D1-AS1	ENST00000501599	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.579	-	-	-	no_errors	SPTY2D1-AS1	HGNC	ENSG00000247595				25	0	0	14	8	36.3636
TMEM86A	0	genome.wustl.edu	37	11	18723139	18723139	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	18723139	18723139	G	A	SNP	TMEM86A	ENST00000280734	human	ensembl	74_37	+1	known	silent	c.306	p.V102	1.000	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86A	HGNC	ENSG00000151117				180	0	0	81	37	31.3559
SCGB1C1	0	genome.wustl.edu	37	11	193746	193746	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	193746	193746	C	A	SNP	SCGB1C1	ENST00000342878	human	ensembl	74_37	+1	known	missense	c.90	p.F30L	1.000	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1C1	HGNC	ENSG00000188076				107	0	0	77	7	8.33333
H19	0	genome.wustl.edu	37	11	2016731	2016731	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	2016731	2016731	A	G	SNP	H19	ENST00000411754	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	H19	HGNC	ENSG00000130600				41	0	0	11	7	38.8889
SLC6A5	0	genome.wustl.edu	37	11	20668389	20668389	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	20668389	20668389	G	T	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	missense	c.1979	p.R660I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				69	0	0	41	7	14.5833
SLC6A5	0	genome.wustl.edu	37	11	20673936	20673936	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	20673936	20673936	T	C	SNP	SLC6A5	ENST00000525748	human	ensembl	74_37	+1	known	silent	c.2172	p.C724	0.978	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A5	HGNC	ENSG00000165970				203	0	0	97	50	34.0136
NELL1	0	genome.wustl.edu	37	11	21135211	21135211	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	21135211	21135211	C	T	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	silent	c.1377	p.R459	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				123	0	0	68	46	40.3509
NELL1	0	genome.wustl.edu	37	11	21135236	21135236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	21135236	21135236	C	T	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.1402	p.R468C	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				132	0	0	67	49	42.2414
NELL1	0	genome.wustl.edu	37	11	21596583	21596583	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	21596583	21596583	A	G	SNP	NELL1	ENST00000529218	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NELL1	HGNC	ENSG00000165973				45	0	0	31	21	40.3846
ANO5	0	genome.wustl.edu	37	11	22291982	22291982	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	22291982	22291982	G	T	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	nonsense	c.2023	p.E675*	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				169	0	0	106	43	28.8591
SLC17A6	0	genome.wustl.edu	37	11	22396342	22396342	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	22396342	22396342	T	G	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.1083	p.I361M	0.997	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				229	0	0	154	79	33.9056
KCNQ1	0	genome.wustl.edu	37	11	2609948	2609948	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	2609948	2609948	G	T	SNP	KCNQ1	ENST00000155840	human	ensembl	74_37	+1	known	missense	c.1257	p.K419N	0.978	prints_K_chnl_volt-dep_KCQN1	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCQN1,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ1	HGNC	ENSG00000053918				41	0	0	18	5	21.7391
ANO3	0	genome.wustl.edu	37	11	26584609	26584609	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	26584609	26584609	C	T	SNP	ANO3	ENST00000529242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANO3	HGNC	ENSG00000134343				53	0	0	28	17	37.7778
SLC5A12	0	genome.wustl.edu	37	11	26700347	26700347	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	26700347	26700347	A	G	SNP	SLC5A12	ENST00000396005	human	ensembl	74_37	-1	known	silent	c.1491	p.D497	0.094	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942				119	0	0	53	27	33.75
FIBIN	0	genome.wustl.edu	37	11	27016106	27016106	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	27016106	27016106	C	T	SNP	FIBIN	ENST00000318627	human	ensembl	74_37	+1	known	silent	c.33	p.F11	0.374	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971				117	0	0	66	17	20.4819
BDNF	0	genome.wustl.edu	37	11	27679427	27679427	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	27679427	27679427	G	A	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	nonsense	c.931	p.R311*	1.000	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				155	0	0	110	47	29.9363
KCNA4	0	genome.wustl.edu	37	11	30032364	30032364	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	30032364	30032364	G	T	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.1862	p.S621Y	1.000	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				143	0	0	78	34	30.3571
CARS	0	genome.wustl.edu	37	11	3039178	3039178	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	3039178	3039178	A	G	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.1636	p.F546L	1.000	tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619				64	0	0	28	14	33.3333
MPPED2	0	genome.wustl.edu	37	11	30439133	30439133	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	30439133	30439133	G	T	SNP	MPPED2	ENST00000358117	human	ensembl	74_37	-1	known	missense	c.584	p.S195Y	1.000	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	MPPED2	HGNC	ENSG00000066382				58	0	0	41	12	22.6415
CARS	0	genome.wustl.edu	37	11	3050134	3050134	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	3050134	3050134	C	T	SNP	CARS	ENST00000465240	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	CARS	HGNC	ENSG00000110619				45	0	0	24	8	25
ELP4	0	genome.wustl.edu	37	11	31625328	31625328	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	31625328	31625328	C	A	SNP	ELP4	ENST00000395934	human	ensembl	74_37	+1	known	nonsense	c.527	p.S176*	0.962	pfam_Elongator_complex_protein_4	pfam_Elongator_complex_protein_4,superfamily_P-loop_NTPase	-	no_errors	ELP4	HGNC	ENSG00000109911				100	0	0	84	42	33.3333
ELP4	0	genome.wustl.edu	37	11	31648659	31648659	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	31648659	31648659	C	T	SNP	ELP4	ENST00000395934	human	ensembl	74_37	+1	known	missense	c.656	p.S219F	0.496	pfam_Elongator_complex_protein_4	pfam_Elongator_complex_protein_4,superfamily_P-loop_NTPase	-	no_errors	ELP4	HGNC	ENSG00000109911				78	0	0	55	20	26.6667
WT1	0	genome.wustl.edu	37	11	32439194	32439194	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32439194	32439194	A	C	SNP	WT1	ENST00000332351	human	ensembl	74_37	-1	known	missense	c.879	p.N293K	0.994	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Wilms_tumour	-	no_errors	WT1	HGNC	ENSG00000184937				68	0	0	33	26	44.0678
WT1	0	genome.wustl.edu	37	11	32449551	32449551	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32449551	32449551	C	T	SNP	WT1	ENST00000332351	human	ensembl	74_37	-1	known	missense	c.823	p.D275N	1.000	pfam_Wilms_tumour_N	pfam_Wilms_tumour_N,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Wilms_tumour	-	no_errors	WT1	HGNC	ENSG00000184937				51	0	0	16	8	33.3333
CCDC73	0	genome.wustl.edu	37	11	32635173	32635173	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32635173	32635173	T	G	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.2691	p.K897N	1.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				184	0	0	122	61	33.3333
CCDC73	0	genome.wustl.edu	37	11	32636375	32636375	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32636375	32636375	T	G	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.1489	p.I497L	0.005	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				82	0	0	57	22	27.8481
CCDC73	0	genome.wustl.edu	37	11	32637444	32637444	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32637444	32637444	C	A	SNP	CCDC73	ENST00000534415	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	CCDC73	HGNC	ENSG00000186714				16	0	0	19	10	34.4828
CCDC73	0	genome.wustl.edu	37	11	32657256	32657256	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32657256	32657256	C	G	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	missense	c.1171	p.D391H	0.984	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				34	0	0	20	10	33.3333
CCDC73	0	genome.wustl.edu	37	11	32676471	32676471	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32676471	32676471	A	G	SNP	CCDC73	ENST00000335185	human	ensembl	74_37	-1	known	silent	c.693	p.C231	1.000	NULL	NULL	-	no_errors	CCDC73	HGNC	ENSG00000186714				38	0	0	23	16	41.0256
QSER1	0	genome.wustl.edu	37	11	32954327	32954327	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32954327	32954327	C	A	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	missense	c.1136	p.S379Y	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				165	0	0	97	47	32.6389
QSER1	0	genome.wustl.edu	37	11	32976960	32976960	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	32976960	32976960	T	C	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	splice_site	c.4230+2	e4+2	1.000	-	-	-	no_errors	QSER1	HGNC	ENSG00000060749				37	0	0	31	10	24.3902
TCP11L1	0	genome.wustl.edu	37	11	33094125	33094125	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	33094125	33094125	A	G	SNP	TCP11L1	ENST00000527661	human	ensembl	74_37	+1	known	missense	c.1433	p.E478G	1.000	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148				188	0	0	120	45	27.2727
HIPK3	0	genome.wustl.edu	37	11	33308184	33308184	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	33308184	33308184	A	G	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.224	p.N75S	0.265	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				154	0	0	84	39	31.7073
HIPK3	0	genome.wustl.edu	37	11	33308552	33308552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	33308552	33308552	G	A	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.592	p.E198K	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				107	1	0.925926	46	31	40.2597
HIPK3	0	genome.wustl.edu	37	11	33375100	33375100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	33375100	33375100	T	C	SNP	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	missense	c.3634	p.Y1212H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				117	0	0	84	6	6.66667
CAPRIN1	0	genome.wustl.edu	37	11	34098105	34098105	+	Splice_Site	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	34098105	34098105	A	C	SNP	CAPRIN1	ENST00000341394	human	ensembl	74_37	+1	known	splice_site	c.606-2	e5-2	1.000	-	-	-	no_errors	CAPRIN1	HGNC	ENSG00000135387				112	0	0	80	42	34.4262
NAT10	0	genome.wustl.edu	37	11	34163346	34163346	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	34163346	34163346	G	A	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	silent	c.2793	p.K931	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372				72	0	0	37	16	30.1887
ABTB2	0	genome.wustl.edu	37	11	34184328	34184328	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	34184328	34184328	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	silent	c.2013	p.T671	0.973	smart_Ankyrin_rpt	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016				65	0	0	25	10	28.5714
EHF	0	genome.wustl.edu	37	11	34670605	34670605	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	34670605	34670605	T	C	SNP	EHF	ENST00000257831	human	ensembl	74_37	+1	known	missense	c.383	p.V128A	1.000	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	EHF	HGNC	ENSG00000135373				271	0	0	123	60	32.7869
EHF	0	genome.wustl.edu	37	11	34680177	34680177	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	34680177	34680177	C	T	SNP	EHF	ENST00000257831	human	ensembl	74_37	+1	known	silent	c.705	p.G235	0.998	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	EHF	HGNC	ENSG00000135373				113	0	0	75	43	36.4407
FJX1	0	genome.wustl.edu	37	11	35641111	35641111	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	35641111	35641111	C	A	SNP	FJX1	ENST00000317811	human	ensembl	74_37	+1	known	silent	c.927	p.L309	0.997	pfam_DUF1193	pfam_DUF1193	-	no_errors	FJX1	HGNC	ENSG00000179431				81	0	0	28	11	28.2051
FJX1	0	genome.wustl.edu	37	11	35641181	35641181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	35641181	35641181	G	A	SNP	FJX1	ENST00000317811	human	ensembl	74_37	+1	known	missense	c.997	p.A333T	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FJX1	HGNC	ENSG00000179431				58	0	0	25	13	34.2105
PRR5L	0	genome.wustl.edu	37	11	36467895	36467895	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	36467895	36467895	G	T	SNP	PRR5L	ENST00000378867	human	ensembl	74_37	+1	known	missense	c.490	p.D164Y	1.000	pfam_HbrB	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362				85	0	0	41	29	41.4286
NUP98	0	genome.wustl.edu	37	11	3716702	3716702	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	3716702	3716702	A	G	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.4144	p.F1382L	1.000	pfam_Nup96	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713				299	0	0	183	77	29.6154
B4GALNT4	0	genome.wustl.edu	37	11	380147	380147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	380147	380147	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.2660	p.R887Q	0.990	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				43	0	0	19	8	29.6296
HNRNPKP3	0	genome.wustl.edu	37	11	43284436	43284436	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	43284436	43284436	T	G	SNP	HNRNPKP3	ENST00000511537	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557				24	0	0	16	10	38.4615
ACCSL	0	genome.wustl.edu	37	11	44070029	44070029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	44070029	44070029	C	T	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.443	p.S148L	0.000	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				137	0	0	81	30	27.027
SYT13	0	genome.wustl.edu	37	11	45267974	45267974	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	45267974	45267974	C	T	SNP	SYT13	ENST00000020926	human	ensembl	74_37	-1	known	silent	c.936	p.K312	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT13	HGNC	ENSG00000019505				89	0	0	44	20	31.25
CHST1	0	genome.wustl.edu	37	11	45671749	45671749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	45671749	45671749	G	A	SNP	CHST1	ENST00000308064	human	ensembl	74_37	-1	known	missense	c.725	p.S242L	0.998	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST1	HGNC	ENSG00000175264				140	0	0	53	38	41.7582
OR52M1	0	genome.wustl.edu	37	11	4567211	4567211	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4567211	4567211	T	C	SNP	OR52M1	ENST00000360213	human	ensembl	74_37	+1	known	missense	c.791	p.I264T	0.780	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52M1	HGNC	ENSG00000197790				145	0	0	72	36	33.3333
C11orf40	0	genome.wustl.edu	37	11	4593454	4593454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4593454	4593454	C	T	SNP	C11orf40	ENST00000307616	human	ensembl	74_37	-1	known	missense	c.379	p.A127T	0.207	NULL	NULL	-	no_errors	C11orf40	HGNC	ENSG00000171987				87	0	0	58	17	22.6667
OR52I2	0	genome.wustl.edu	37	11	4608256	4608256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4608256	4608256	A	G	SNP	OR52I2	ENST00000312614	human	ensembl	74_37	+1	known	missense	c.214	p.N72D	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52I2	HGNC	ENSG00000226288				353	0	0	186	74	28.4615
TRIM68	0	genome.wustl.edu	37	11	4621672	4621672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4621672	4621672	G	A	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.1292	p.A431V	0.987	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				106	0	0	66	22	25
ATG13	0	genome.wustl.edu	37	11	46665897	46665897	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	46665897	46665897	T	G	SNP	ATG13	ENST00000312040	human	ensembl	74_37	+1	known	missense	c.56	p.F19C	1.000	pfam_Autophagy-rel_p13	pfam_Autophagy-rel_p13	-	no_errors	ATG13	HGNC	ENSG00000175224				107	0	0	59	31	34.4444
CKAP5	0	genome.wustl.edu	37	11	46776615	46776615	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	46776615	46776615	G	A	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.4692	p.I1564	0.101	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				78	0	0	31	13	29.5455
CKAP5	0	genome.wustl.edu	37	11	46804892	46804892	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	46804892	46804892	C	A	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.2181	p.K727N	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				55	0	0	30	19	38.7755
C11orf49	0	genome.wustl.edu	37	11	47179525	47179525	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	47179525	47179525	G	A	SNP	C11orf49	ENST00000525953	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C11orf49	HGNC	ENSG00000149179				86	0	0	43	17	28.3333
MADD	0	genome.wustl.edu	37	11	47348331	47348331	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	47348331	47348331	C	T	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	nonsense	c.4765	p.R1589*	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				111	0	0	53	28	34.5679
SPI1	0	genome.wustl.edu	37	11	47397271	47397271	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	47397271	47397271	C	A	SNP	SPI1	ENST00000227163	human	ensembl	74_37	-1	known	missense	c.58	p.D20Y	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPI1	HGNC	ENSG00000066336				123	0	0	71	12	14.4578
MTCH2	0	genome.wustl.edu	37	11	47640313	47640313	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	47640313	47640313	G	T	SNP	MTCH2	ENST00000534074	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MTCH2	HGNC	ENSG00000109919				101	0	0	54	36	40
OR51F1	0	genome.wustl.edu	37	11	4790838	4790838	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4790838	4790838	A	G	SNP	OR51F1	ENST00000380383	human	ensembl	74_37	-1	known	missense	c.331	p.F111L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51F1	HGNC	ENSG00000188069				73	0	0	39	27	40.9091
OR51S1	0	genome.wustl.edu	37	11	4870013	4870013	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4870013	4870013	C	T	SNP	OR51S1	ENST00000322101	human	ensembl	74_37	-1	known	silent	c.426	p.A142	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51S1	HGNC	ENSG00000176922				193	0	0	97	49	33.5616
OR51T1	0	genome.wustl.edu	37	11	4904076	4904076	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	4904076	4904076	G	A	SNP	OR51T1	ENST00000380378	human	ensembl	74_37	+1	known	missense	c.1028	p.G343D	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51T1	HGNC	ENSG00000176900				95	0	0	44	22	33.3333
TRIM49B	0	genome.wustl.edu	37	11	49059322	49059322	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	49059322	49059322	G	A	SNP	TRIM49B	ENST00000332682	human	ensembl	74_37	+1	known	silent	c.1152	p.K384	0.053	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49B	HGNC	ENSG00000182053				159	0	0	68	52	43.3333
LOC440040	0	genome.wustl.edu	37	11	49831387	49831387	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	49831387	49831387	C	T	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.087	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				47	0	0	28	17	37.7778
OR4C12	0	genome.wustl.edu	37	11	50003388	50003388	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	50003388	50003388	A	G	SNP	OR4C12	ENST00000335238	human	ensembl	74_37	-1	known	missense	c.650	p.V217A	0.995	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4C12	HGNC	ENSG00000221954				105	0	0	79	24	23.301
OR52A5	0	genome.wustl.edu	37	11	5153774	5153774	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5153774	5153774	G	T	SNP	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	missense	c.99	p.F33L	0.505	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				107	0	0	68	25	26.8817
OR52A1	0	genome.wustl.edu	37	11	5173501	5173501	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5173501	5173501	G	A	SNP	OR52A1	ENST00000328942	human	ensembl	74_37	-1	known	silent	c.99	p.F33	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A1	HGNC	ENSG00000182070				78	0	0	41	23	35.9375
HBD	0	genome.wustl.edu	37	11	5253984	5253984	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5253984	5253984	A	G	SNP	HBD	ENST00000292901	human	ensembl	74_37	-1	putative	silent	c.360	p.C120	0.000	NULL	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b	-	no_errors	HBD	HGNC	ENSG00000223609				27	0	0	14	7	33.3333
HBG2	0	genome.wustl.edu	37	11	5275593	5275593	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5275593	5275593	G	T	SNP	HBG2	ENST00000336906	human	ensembl	74_37	-1	known	missense	c.244	p.L82I	0.118	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b,prints_Myoglobin	-	no_errors	HBG2	HGNC	ENSG00000196565				352	0	0	198	12	5.71429
OR51B4	0	genome.wustl.edu	37	11	5322320	5322320	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5322320	5322320	G	T	SNP	OR51B4	ENST00000380224	human	ensembl	74_37	-1	known	missense	c.857	p.P286H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B4	HGNC	ENSG00000183251				88	0	0	50	25	33.3333
OR51B5	0	genome.wustl.edu	37	11	5364321	5364321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5364321	5364321	C	T	SNP	OR51B5	ENST00000300773	human	ensembl	74_37	-1	known	missense	c.434	p.G145E	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180				106	0	0	67	29	30.2083
OR51B6	0	genome.wustl.edu	37	11	5373216	5373216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5373216	5373216	G	A	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.479	p.R160H	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				138	0	0	72	36	33.3333
OR51B6	0	genome.wustl.edu	37	11	5373534	5373534	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5373534	5373534	T	C	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.797	p.V266A	0.009	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				212	0	0	99	60	37.7358
OR51M1	0	genome.wustl.edu	37	11	5410951	5410951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5410951	5410951	C	T	SNP	OR51M1	ENST00000328611	human	ensembl	74_37	+1	known	missense	c.323	p.A108V	0.211	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698				303	0	0	109	67	38.0682
OR51M1	0	genome.wustl.edu	37	11	5411514	5411514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5411514	5411514	C	T	SNP	OR51M1	ENST00000328611	human	ensembl	74_37	+1	known	missense	c.886	p.P296S	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51M1	HGNC	ENSG00000184698				52	0	0	29	9	23.6842
OR4A16	0	genome.wustl.edu	37	11	55111601	55111601	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55111601	55111601	A	C	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	missense	c.925	p.K309Q	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				36	0	0	23	11	32.3529
UBQLN3	0	genome.wustl.edu	37	11	5529786	5529786	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5529786	5529786	T	G	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.1003	p.N335H	0.009	NULL	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				138	0	0	54	16	22.8571
OR4C15	0	genome.wustl.edu	37	11	55321977	55321977	+	Silent	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55321977	55321977	C	G	SNP	OR4C15	ENST00000314644	human	ensembl	74_37	+1	known	silent	c.195	p.V65	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C15	HGNC	ENSG00000181939				191	0	0	119	46	27.8788
LRRC56	0	genome.wustl.edu	37	11	554059	554059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	554059	554059	A	G	SNP	LRRC56	ENST00000270115	human	ensembl	74_37	+1	known	missense	c.1412	p.D471G	0.004	NULL	NULL	-	no_errors	LRRC56	HGNC	ENSG00000161328				179	0	0	79	30	27.5229
OR4S2	0	genome.wustl.edu	37	11	55418468	55418468	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55418468	55418468	C	A	SNP	OR4S2	ENST00000312422	human	ensembl	74_37	+1	known	missense	c.89	p.S30Y	0.272	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S2	HGNC	ENSG00000174982				160	0	0	81	39	32.5
OR4C6	0	genome.wustl.edu	37	11	55433046	55433046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55433046	55433046	G	A	SNP	OR4C6	ENST00000314259	human	ensembl	74_37	+1	known	missense	c.404	p.S135N	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C6	HGNC	ENSG00000181903				139	0	0	99	34	25.5639
OR5D13	0	genome.wustl.edu	37	11	55541018	55541018	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55541018	55541018	C	T	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	silent	c.105	p.F35	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				182	0	0	115	50	30.303
OR5D13	0	genome.wustl.edu	37	11	55541337	55541337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55541337	55541337	C	T	SNP	OR5D13	ENST00000361760	human	ensembl	74_37	+1	known	missense	c.424	p.L142F	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D13	HGNC	ENSG00000198877				303	0	0	173	71	29.0984
OR5D14	0	genome.wustl.edu	37	11	55563579	55563579	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55563579	55563579	A	G	SNP	OR5D14	ENST00000335605	human	ensembl	74_37	+1	known	missense	c.548	p.Y183C	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D14	HGNC	ENSG00000186113				293	0	0	178	68	27.6423
OR5L2	0	genome.wustl.edu	37	11	55595592	55595592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55595592	55595592	G	A	SNP	OR5L2	ENST00000378397	human	ensembl	74_37	+1	known	missense	c.898	p.A300T	0.046	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5L2	HGNC	ENSG00000205030				43	0	0	41	16	28.0702
OR5D16	0	genome.wustl.edu	37	11	55606387	55606387	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55606387	55606387	A	C	SNP	OR5D16	ENST00000378396	human	ensembl	74_37	+1	known	missense	c.160	p.N54H	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D16	HGNC	ENSG00000205029				227	0	0	151	62	29.108
OR5D16	0	genome.wustl.edu	37	11	55606573	55606573	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55606573	55606573	C	A	SNP	OR5D16	ENST00000378396	human	ensembl	74_37	+1	known	missense	c.346	p.L116I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D16	HGNC	ENSG00000205029				202	0	0	117	66	36.0656
TRIM51	0	genome.wustl.edu	37	11	55658701	55658701	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55658701	55658701	G	T	SNP	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	missense	c.952	p.D318Y	0.956	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				180	0	0	102	49	32.4503
OR5W2	0	genome.wustl.edu	37	11	55681666	55681666	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55681666	55681666	G	A	SNP	OR5W2	ENST00000344514	human	ensembl	74_37	-1	known	silent	c.393	p.L131	0.796	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612				104	0	0	61	30	32.967
OR10AG1	0	genome.wustl.edu	37	11	55735572	55735572	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55735572	55735572	T	C	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.368	p.Y123C	0.972	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				86	0	0	60	31	34.0659
OR10AG1	0	genome.wustl.edu	37	11	55735927	55735927	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55735927	55735927	G	T	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.13	p.L5I	0.777	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970				63	0	0	44	22	33.3333
OR5AS1	0	genome.wustl.edu	37	11	55798656	55798656	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55798656	55798656	G	A	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	silent	c.762	p.A254	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785				160	0	0	78	32	29.0909
OR8H2	0	genome.wustl.edu	37	11	55873182	55873182	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55873182	55873182	C	A	SNP	OR8H2	ENST00000313503	human	ensembl	74_37	+1	known	missense	c.664	p.L222I	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767				162	0	0	114	47	29.1925
OR8J3	0	genome.wustl.edu	37	11	55904703	55904703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55904703	55904703	G	T	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	missense	c.492	p.F164L	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				93	0	0	55	27	32.9268
OR8K5	0	genome.wustl.edu	37	11	55927518	55927518	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55927518	55927518	A	C	SNP	OR8K5	ENST00000313447	human	ensembl	74_37	-1	known	missense	c.276	p.I92M	0.924	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K5	HGNC	ENSG00000181752				144	0	0	86	47	35.3383
OR5T3	0	genome.wustl.edu	37	11	56020510	56020510	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56020510	56020510	A	G	SNP	OR5T3	ENST00000303059	human	ensembl	74_37	+1	known	missense	c.835	p.T279A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T3	HGNC	ENSG00000172489				189	0	0	115	48	29.4479
OR5T1	0	genome.wustl.edu	37	11	56043234	56043234	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56043234	56043234	T	G	SNP	OR5T1	ENST00000313033	human	ensembl	74_37	+1	known	missense	c.120	p.F40L	0.183	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698				103	0	0	80	27	25.2336
OR8K1	0	genome.wustl.edu	37	11	56114034	56114034	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56114034	56114034	T	G	SNP	OR8K1	ENST00000279783	human	ensembl	74_37	+1	known	missense	c.520	p.F174V	0.859	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K1	HGNC	ENSG00000150261				161	0	0	109	65	37.3563
OR5R1	0	genome.wustl.edu	37	11	56185686	56185686	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56185686	56185686	T	C	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	missense	c.23	p.Y8C	0.026	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942				143	0	0	88	32	26.6667
OR5R1	0	genome.wustl.edu	37	11	56185699	56185699	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56185699	56185699	C	A	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	missense	c.10	p.V4F	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942				125	1	0.793651	85	30	26.087
OR5M9	0	genome.wustl.edu	37	11	56230298	56230298	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56230298	56230298	C	A	SNP	OR5M9	ENST00000279791	human	ensembl	74_37	-1	known	nonsense	c.580	p.E194*	0.096	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M9	HGNC	ENSG00000150269				62	0	0	41	11	21.1538
OR5M8	0	genome.wustl.edu	37	11	56258583	56258583	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56258583	56258583	C	A	SNP	OR5M8	ENST00000327216	human	ensembl	74_37	-1	known	missense	c.264	p.K88N	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M8	HGNC	ENSG00000181371				153	0	0	73	43	37.069
OR5M11	0	genome.wustl.edu	37	11	56310494	56310494	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56310494	56310494	C	A	SNP	OR5M11	ENST00000528616	human	ensembl	74_37	-1	known	missense	c.240	p.Q80H	0.962	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M11	HGNC	ENSG00000255223				123	0	0	66	19	22.3529
TRIM6-TRIM34	0	genome.wustl.edu	37	11	5631384	5631384	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5631384	5631384	C	A	SNP	TRIM6-TRIM34	ENST00000354852	human	ensembl	74_37	+1	known	missense	c.867	p.F289L	0.999	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM6-TRIM34	HGNC	ENSG00000258588				75	0	0	43	30	41.0959
TRIM6	0	genome.wustl.edu	37	11	5632597	5632597	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5632597	5632597	C	T	SNP	TRIM6	ENST00000481603	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIM6	HGNC	ENSG00000121236				124	0	0	72	40	35.7143
OR5AR1	0	genome.wustl.edu	37	11	56432021	56432021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	56432021	56432021	C	T	SNP	OR5AR1	ENST00000302969	human	ensembl	74_37	+1	known	missense	c.860	p.P287L	0.989	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459				60	0	0	26	12	31.5789
APLNR	0	genome.wustl.edu	37	11	57003635	57003635	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57003635	57003635	C	T	SNP	APLNR	ENST00000257254	human	ensembl	74_37	-1	known	missense	c.844	p.D282N	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_APJ_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_APJ_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	APLNR	HGNC	ENSG00000134817				53	0	0	35	12	25.5319
TRIM5	0	genome.wustl.edu	37	11	5701382	5701382	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5701382	5701382	A	G	SNP	TRIM5	ENST00000305836	human	ensembl	74_37	-1	known	missense	c.26	p.V9A	0.449	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM5	HGNC	ENSG00000132256				101	0	0	62	21	25.3012
SSRP1	0	genome.wustl.edu	37	11	57099296	57099296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57099296	57099296	G	A	SNP	SSRP1	ENST00000278412	human	ensembl	74_37	-1	known	missense	c.1069	p.R357W	1.000	pfam_SSRP1_dom,pfam_DUF1747,prints_SSrcognition	pfam_SSRP1_dom,pfam_DUF1747,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom,prints_SSrcognition	-	no_errors	SSRP1	HGNC	ENSG00000149136				64	0	0	30	6	16.6667
TRIM22	0	genome.wustl.edu	37	11	5730393	5730393	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5730393	5730393	G	T	SNP	TRIM22	ENST00000379965	human	ensembl	74_37	+1	known	missense	c.1012	p.D338Y	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM22	HGNC	ENSG00000132274				149	0	0	96	31	24.4094
ZDHHC5	0	genome.wustl.edu	37	11	57456029	57456029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57456029	57456029	A	C	SNP	ZDHHC5	ENST00000287169	human	ensembl	74_37	+1	known	missense	c.276	p.K92N	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC5	HGNC	ENSG00000156599				103	0	0	40	28	41.1765
CTNND1	0	genome.wustl.edu	37	11	57576003	57576003	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57576003	57576003	G	T	SNP	CTNND1	ENST00000399050	human	ensembl	74_37	+1	known	nonsense	c.2233	p.E745*	0.993	superfamily_ARM-type_fold,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND1	HGNC	ENSG00000198561				81	0	0	45	24	34.7826
OR9I1	0	genome.wustl.edu	37	11	57886886	57886886	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57886886	57886886	C	T	SNP	OR9I1	ENST00000302610	human	ensembl	74_37	-1	known	missense	c.31	p.E11K	0.124	NULL	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR9I1	HGNC	ENSG00000172377				78	0	0	49	26	34.6667
OR9Q1	0	genome.wustl.edu	37	11	57947716	57947716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	57947716	57947716	C	T	SNP	OR9Q1	ENST00000335397	human	ensembl	74_37	+1	known	missense	c.800	p.S267L	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9Q1	HGNC	ENSG00000186509				169	1	0.588235	81	53	39.5522
OR10W1	0	genome.wustl.edu	37	11	58035240	58035240	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58035240	58035240	T	C	SNP	OR10W1	ENST00000395079	human	ensembl	74_37	-1	known	missense	c.91	p.T31A	0.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10W1	HGNC	ENSG00000172772				82	0	0	61	29	32.2222
OR52N1	0	genome.wustl.edu	37	11	5809177	5809177	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5809177	5809177	C	A	SNP	OR52N1	ENST00000317078	human	ensembl	74_37	-1	known	missense	c.870	p.M290I	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N1	HGNC	ENSG00000181001				87	0	0	26	57	68.6747
OR5B12	0	genome.wustl.edu	37	11	58207072	58207072	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58207072	58207072	G	T	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.553	p.L185I	0.956	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				81	0	0	47	21	30.8824
OR5B12	0	genome.wustl.edu	37	11	58207297	58207297	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58207297	58207297	T	A	SNP	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	missense	c.328	p.S110C	0.202	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				120	0	0	65	38	36.8932
ZFP91	0	genome.wustl.edu	37	11	58377501	58377501	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58377501	58377501	A	G	SNP	ZFP91	ENST00000316059	human	ensembl	74_37	+1	known	missense	c.569	p.Q190R	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP91	HGNC	ENSG00000186660				72	0	0	63	5	7.35294
GLYAT	0	genome.wustl.edu	37	11	58477342	58477342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58477342	58477342	G	A	SNP	GLYAT	ENST00000344743	human	ensembl	74_37	-1	known	missense	c.788	p.S263F	0.772	pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYAT	HGNC	ENSG00000149124				115	0	0	73	24	24.7423
GLYATL2	0	genome.wustl.edu	37	11	58604789	58604789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58604789	58604789	A	G	SNP	GLYATL2	ENST00000287275	human	ensembl	74_37	-1	known	missense	c.268	p.S90P	0.000	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL2	HGNC	ENSG00000156689				153	0	0	86	51	37.2263
OR52E8	0	genome.wustl.edu	37	11	5878752	5878752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5878752	5878752	G	A	SNP	OR52E8	ENST00000537935	human	ensembl	74_37	-1	known	missense	c.181	p.L61F	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E8	HGNC	ENSG00000183269				219	0	0	129	37	22.2892
FAM111A	0	genome.wustl.edu	37	11	58920482	58920482	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58920482	58920482	A	C	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	missense	c.1341	p.E447D	0.008	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				130	0	0	75	41	35.3448
FAM111A	0	genome.wustl.edu	37	11	58920784	58920784	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58920784	58920784	C	A	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	nonsense	c.1643	p.S548*	0.609	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				209	0	0	134	48	26.3736
MPEG1	0	genome.wustl.edu	37	11	58979109	58979109	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58979109	58979109	G	T	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	missense	c.1230	p.F410L	0.994	NULL	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				100	0	0	80	8	9.09091
MPEG1	0	genome.wustl.edu	37	11	58979454	58979454	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	58979454	58979454	A	G	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	silent	c.885	p.G295	0.761	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629				35	0	0	12	9	42.8571
OR52E4	0	genome.wustl.edu	37	11	5905807	5905807	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5905807	5905807	C	A	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.285	p.S95R	0.006	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				169	0	0	89	42	32.0611
OR52E4	0	genome.wustl.edu	37	11	5906275	5906275	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	5906275	5906275	C	A	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	nonsense	c.753	p.C251*	0.793	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				187	0	0	92	36	28.125
OR4D11	0	genome.wustl.edu	37	11	59271687	59271687	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	59271687	59271687	C	T	SNP	OR4D11	ENST00000313253	human	ensembl	74_37	+1	known	silent	c.639	p.F213	0.786	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D11	HGNC	ENSG00000176200				257	0	0	128	64	33.3333
OR4D9	0	genome.wustl.edu	37	11	59282741	59282741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	59282741	59282741	C	T	SNP	OR4D9	ENST00000329328	human	ensembl	74_37	+1	known	missense	c.356	p.A119V	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742				126	0	0	65	46	41.4414
OR4D9	0	genome.wustl.edu	37	11	59282896	59282896	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	59282896	59282896	C	T	SNP	OR4D9	ENST00000329328	human	ensembl	74_37	+1	known	missense	c.511	p.P171S	0.359	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D9	HGNC	ENSG00000172742				242	0	0	114	48	29.6296
MRPL16	0	genome.wustl.edu	37	11	59575228	59575228	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	59575228	59575228	T	C	SNP	MRPL16	ENST00000300151	human	ensembl	74_37	-1	known	missense	c.216	p.I72M	0.995	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,prints_Ribosomal_L16	-	no_errors	MRPL16	HGNC	ENSG00000166902				333	0	0	183	113	38.1757
GIF	0	genome.wustl.edu	37	11	59603299	59603299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	59603299	59603299	C	T	SNP	GIF	ENST00000257248	human	ensembl	74_37	-1	known	missense	c.1055	p.R352H	0.998	NULL	pfam_Cbl-bd_transpt_euk	-	no_errors	GIF	HGNC	ENSG00000134812				216	1	0.460829	87	71	44.9367
MS4A7	0	genome.wustl.edu	37	11	60156897	60156897	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60156897	60156897	C	A	SNP	MS4A7	ENST00000300184	human	ensembl	74_37	+1	known	missense	c.374	p.S125Y	0.002	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A7	HGNC	ENSG00000166927				82	0	0	43	9	17.3077
MS4A7	0	genome.wustl.edu	37	11	60157046	60157046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60157046	60157046	C	T	SNP	MS4A7	ENST00000300184	human	ensembl	74_37	+1	known	missense	c.523	p.L175F	0.287	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A7	HGNC	ENSG00000166927				125	0	0	61	21	25.6098
MS4A13	0	genome.wustl.edu	37	11	60296873	60296873	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60296873	60296873	C	A	SNP	MS4A13	ENST00000378186	human	ensembl	74_37	+1	known	missense	c.342	p.F114L	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A13	HGNC	ENSG00000204979				71	0	0	49	19	27.9412
MS4A13	0	genome.wustl.edu	37	11	60309995	60309995	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60309995	60309995	C	T	SNP	MS4A13	ENST00000378186	human	ensembl	74_37	+1	known	nonsense	c.406	p.R136*	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A13	HGNC	ENSG00000204979				37	0	0	17	9	34.6154
OR56A1	0	genome.wustl.edu	37	11	6048000	6048000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6048000	6048000	T	G	SNP	OR56A1	ENST00000316650	human	ensembl	74_37	-1	known	missense	c.935	p.K312T	0.058	pfam_7TM_GPCR_olfarory/Srsx	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR56A1	HGNC	ENSG00000180934				88	0	0	33	27	45
MS4A10	0	genome.wustl.edu	37	11	60559761	60559761	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60559761	60559761	G	A	SNP	MS4A10	ENST00000308287	human	ensembl	74_37	+1	known	silent	c.327	p.A109	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A10	HGNC	ENSG00000172689				195	0	0	102	37	26.6187
PRPF19	0	genome.wustl.edu	37	11	60665619	60665619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60665619	60665619	C	T	SNP	PRPF19	ENST00000227524	human	ensembl	74_37	-1	known	missense	c.1265	p.R422H	1.000	superfamily_WD40_repeat_dom,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Pre-mRNA_splic_Prp19,pfam_Ubox_domain,superfamily_WD40_repeat_dom,smart_Ubox_domain,smart_WD40_repeat,pfscan_Ricin_B_lectin,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF19	HGNC	ENSG00000110107				108	0	0	57	32	35.9551
SLC15A3	0	genome.wustl.edu	37	11	60708685	60708685	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	60708685	60708685	G	C	SNP	SLC15A3	ENST00000227880	human	ensembl	74_37	-1	known	missense	c.1185	p.D395E	1.000	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_POT_fam,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC15A3	HGNC	ENSG00000110446				50	0	0	14	10	41.6667
VWCE	0	genome.wustl.edu	37	11	61032439	61032439	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61032439	61032439	A	G	SNP	VWCE	ENST00000335613	human	ensembl	74_37	-1	known	missense	c.2128	p.C710R	0.892	pfam_VWF_C,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992				160	0	0	55	28	33.7349
CYB561A3	0	genome.wustl.edu	37	11	61118518	61118518	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61118518	61118518	A	G	SNP	CYB561A3	ENST00000426130	human	ensembl	74_37	-1	known	missense	c.701	p.I234T	0.868	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYB561A3	HGNC	ENSG00000162144				57	0	0	28	13	31.7073
PPP1R32	0	genome.wustl.edu	37	11	61253289	61253289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61253289	61253289	C	T	SNP	PPP1R32	ENST00000338608	human	ensembl	74_37	+1	known	missense	c.593	p.S198L	0.043	NULL	NULL	-	no_errors	PPP1R32	HGNC	ENSG00000162148				138	0	0	64	26	28.8889
TMEM258	0	genome.wustl.edu	37	11	61558069	61558069	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61558069	61558069	G	A	SNP	TMEM258	ENST00000257262	human	ensembl	74_37	-1	known	silent	c.9	p.L3	0.944	pfam_UPF0197	pfam_UPF0197	-	no_errors	TMEM258	HGNC	ENSG00000134825				38	0	0	19	11	36.6667
FADS3	0	genome.wustl.edu	37	11	61645986	61645986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61645986	61645986	C	T	SNP	FADS3	ENST00000278829	human	ensembl	74_37	-1	known	missense	c.745	p.E249K	0.999	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS3	HGNC	ENSG00000221968				174	0	0	86	24	21.8182
INCENP	0	genome.wustl.edu	37	11	61919280	61919280	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	61919280	61919280	G	A	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	silent	c.2589	p.P863	0.009	pfam_Inner_centromere_prot_ARK-bd	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503				147	0	0	72	30	29.4118
MTA2	0	genome.wustl.edu	37	11	62362466	62362466	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	62362466	62362466	G	A	SNP	MTA2	ENST00000278823	human	ensembl	74_37	-1	known	silent	c.1560	p.I520	0.991	NULL	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA2	HGNC	ENSG00000149480				336	0	0	156	70	30.9735
GANAB	0	genome.wustl.edu	37	11	62402472	62402472	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	62402472	62402472	C	T	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	silent	c.381	p.R127	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GANAB	HGNC	ENSG00000089597				128	0	0	47	38	44.7059
METTL12	0	genome.wustl.edu	37	11	62433962	62433962	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	62433962	62433962	C	A	SNP	METTL12	ENST00000532971	human	ensembl	74_37	+1	known	missense	c.162	p.F54L	1.000	NULL	pfam_Methyltransf_11	-	no_errors	METTL12	HGNC	ENSG00000214756				165	0	0	77	34	30.6306
HNRNPUL2	0	genome.wustl.edu	37	11	62484514	62484514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	62484514	62484514	C	T	SNP	HNRNPUL2	ENST00000301785	human	ensembl	74_37	-1	known	missense	c.1928	p.R643Q	0.981	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753				117	0	0	51	27	34.6154
STX5	0	genome.wustl.edu	37	11	62594857	62594857	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	62594857	62594857	C	A	SNP	STX5	ENST00000294179	human	ensembl	74_37	-1	known	missense	c.310	p.D104Y	1.000	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX5	HGNC	ENSG00000162236				256	0	0	136	48	26.087
CNGA4	0	genome.wustl.edu	37	11	6261346	6261346	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6261346	6261346	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.322	p.R108C	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				237	0	0	113	58	33.9181
CCKBR	0	genome.wustl.edu	37	11	6290930	6290930	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6290930	6290930	C	T	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	silent	c.183	p.Y61	0.738	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				155	1	0.641026	76	35	31.5315
CCKBR	0	genome.wustl.edu	37	11	6291065	6291065	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6291065	6291065	T	G	SNP	CCKBR	ENST00000525462	human	ensembl	74_37	+1	known	silent	c.318	p.A106	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Gastrin_rcpt,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	CCKBR	HGNC	ENSG00000110148				163	0	0	84	29	25.6637
SLC22A9	0	genome.wustl.edu	37	11	63137605	63137605	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63137605	63137605	T	G	SNP	SLC22A9	ENST00000279178	human	ensembl	74_37	+1	known	missense	c.77	p.I26S	0.001	NULL	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A9	HGNC	ENSG00000149742				219	0	0	124	47	27.4854
RARRES3	0	genome.wustl.edu	37	11	63312441	63312441	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63312441	63312441	A	C	SNP	RARRES3	ENST00000439013	human	ensembl	74_37	+1	putative	missense	c.467	p.E156A	0.000	NULL	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				93	0	0	65	22	25.2874
RARRES3	0	genome.wustl.edu	37	11	63313629	63313629	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63313629	63313629	G	A	SNP	RARRES3	ENST00000255688	human	ensembl	74_37	+1	known	silent	c.396	p.K132	0.000	pfam_LRAT-like_dom	pfam_LRAT-like_dom	-	no_errors	RARRES3	HGNC	ENSG00000133321				327	0	0	142	90	38.7931
RTN3	0	genome.wustl.edu	37	11	63487738	63487738	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63487738	63487738	G	A	SNP	RTN3	ENST00000377819	human	ensembl	74_37	+1	known	silent	c.1764	p.T588	0.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318				178	0	0	98	46	31.9444
MARK2	0	genome.wustl.edu	37	11	63667549	63667549	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63667549	63667549	C	T	SNP	MARK2	ENST00000402010	human	ensembl	74_37	+1	known	silent	c.735	p.S245	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK2	HGNC	ENSG00000072518				322	2	0.617284	136	79	36.7442
STIP1	0	genome.wustl.edu	37	11	63961954	63961954	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	63961954	63961954	G	T	SNP	STIP1	ENST00000305218	human	ensembl	74_37	+1	known	missense	c.365	p.R122I	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_STI1_HS-bd,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	STIP1	HGNC	ENSG00000168439				138	0	0	60	21	25.9259
PLCB3	0	genome.wustl.edu	37	11	64029069	64029069	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64029069	64029069	C	T	SNP	PLCB3	ENST00000279230	human	ensembl	74_37	+1	known	silent	c.1845	p.F615	0.846	pirsf_PLC-beta,pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,pfam_PLC-beta_CS,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB3	HGNC	ENSG00000149782				151	0	0	54	35	39.3258
SMPD1	0	genome.wustl.edu	37	11	6412632	6412632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6412632	6412632	C	T	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	0.312	superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				93	0	0	40	13	24.5283
SMPD1	0	genome.wustl.edu	37	11	6414487	6414487	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6414487	6414487	G	A	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	missense	c.1133	p.R378H	1.000	pfam_PEstase_dom,pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				61	0	0	21	14	40
NRXN2	0	genome.wustl.edu	37	11	64398002	64398002	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64398002	64398002	T	C	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.3629	p.D1210G	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				90	0	0	41	24	36.9231
SF1	0	genome.wustl.edu	37	11	64536783	64536783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64536783	64536783	C	T	SNP	SF1	ENST00000377390	human	ensembl	74_37	-1	known	missense	c.691	p.E231K	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066				157	0	0	72	40	35.7143
NAALADL1	0	genome.wustl.edu	37	11	64820878	64820878	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64820878	64820878	G	T	SNP	NAALADL1	ENST00000340252	human	ensembl	74_37	-1	putative	missense	c.1163	p.P388Q	0.000	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060				44	0	0	14	15	51.7241
ZNHIT2	0	genome.wustl.edu	37	11	64883942	64883942	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64883942	64883942	C	A	SNP	ZNHIT2	ENST00000310597	human	ensembl	74_37	-1	known	missense	c.1184	p.R395I	0.416	NULL	pfam_Znf_HIT,pfscan_Znf_HIT	-	no_errors	ZNHIT2	HGNC	ENSG00000174276				231	0	0	86	57	39.8601
ENSG00000255200	0	genome.wustl.edu	37	11	64942656	64942656	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	64942656	64942656	G	T	SNP	ENSG00000255200	ENST00000534819	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AP003068.18	Clone_based_vega_gene	ENSG00000255200				222	0	0	132	38	22.3529
ARFIP2	0	genome.wustl.edu	37	11	6500092	6500092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6500092	6500092	C	T	SNP	ARFIP2	ENST00000254584	human	ensembl	74_37	-1	known	missense	c.413	p.R138H	1.000	pfam_AH_dom,pfscan_AH_dom	pfam_AH_dom,pfscan_AH_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254				72	0	0	33	12	26.6667
POLA2	0	genome.wustl.edu	37	11	65046230	65046230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65046230	65046230	G	A	SNP	POLA2	ENST00000265465	human	ensembl	74_37	+1	known	missense	c.491	p.R164Q	0.683	pfam_Pol_alpha_B_N,pirsf_DNA_pol_alpha_bsu	pfam_Pol_alpha_B_N,pfam_DNA_pol_alpha/epsilon_bsu,pirsf_DNA_pol_alpha_bsu	-	no_errors	POLA2	HGNC	ENSG00000014138				234	0	0	127	53	29.4444
DPF2	0	genome.wustl.edu	37	11	65109022	65109022	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65109022	65109022	C	T	SNP	DPF2	ENST00000528416	human	ensembl	74_37	+1	known	nonsense	c.454	p.R152*	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884				83	0	0	60	15	20
MALAT1	0	genome.wustl.edu	37	11	65269454	65269454	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65269454	65269454	G	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				39	0	0	23	19	45.2381
MALAT1	0	genome.wustl.edu	37	11	65273714	65273714	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65273714	65273714	C	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				64	0	0	29	17	36.9565
EHBP1L1	0	genome.wustl.edu	37	11	65350612	65350612	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65350612	65350612	G	T	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.2469	p.E823D	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				63	0	0	34	20	37.037
MAP3K11	0	genome.wustl.edu	37	11	65380788	65380788	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65380788	65380788	C	T	SNP	MAP3K11	ENST00000309100	human	ensembl	74_37	-1	known	missense	c.440	p.R147H	1.000	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K11	HGNC	ENSG00000173327				122	0	0	48	33	40.7407
DNHD1	0	genome.wustl.edu	37	11	6540971	6540971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6540971	6540971	G	A	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.1534	p.A512T	0.404	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				103	0	0	53	20	27.3973
SART1	0	genome.wustl.edu	37	11	65745317	65745317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65745317	65745317	G	A	SNP	SART1	ENST00000312397	human	ensembl	74_37	+1	known	missense	c.2119	p.D707N	0.944	pfam_SART_1	pfam_SART_1	-	no_errors	SART1	HGNC	ENSG00000175467				49	0	0	18	11	37.931
SF3B2	0	genome.wustl.edu	37	11	65826323	65826323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	65826323	65826323	G	A	SNP	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	missense	c.989	p.R330Q	0.993	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				77	0	0	51	18	26.087
DNHD1	0	genome.wustl.edu	37	11	6588290	6588290	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6588290	6588290	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	nonsense	c.11551	p.R3851*	0.535	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				121	0	0	63	35	35.7143
DNHD1	0	genome.wustl.edu	37	11	6591310	6591310	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6591310	6591310	C	G	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.12935	p.A4312G	0.001	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				118	0	0	69	18	20.6897
SLC29A2	0	genome.wustl.edu	37	11	66136541	66136541	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	66136541	66136541	G	A	SNP	SLC29A2	ENST00000541567	human	ensembl	74_37	-1	known	missense	c.337	p.L113F	1.000	NULL	NULL	-	no_errors	SLC29A2	HGNC	ENSG00000174669				20	0	0	6	3	33.3333
NPAS4	0	genome.wustl.edu	37	11	66192494	66192494	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	66192494	66192494	A	C	SNP	NPAS4	ENST00000311034	human	ensembl	74_37	+1	known	missense	c.2133	p.E711D	1.000	NULL	pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	NPAS4	HGNC	ENSG00000174576				219	0	0	128	22	14.6667
CTSF	0	genome.wustl.edu	37	11	66334775	66334775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	66334775	66334775	C	T	SNP	CTSF	ENST00000310325	human	ensembl	74_37	-1	known	missense	c.549	p.M183I	0.204	NULL	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSF	HGNC	ENSG00000174080				185	0	0	101	39	27.8571
SPTBN2	0	genome.wustl.edu	37	11	66482842	66482842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	66482842	66482842	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	missense	c.334	p.R112W	1.000	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				83	0	0	25	19	43.1818
SYT12	0	genome.wustl.edu	37	11	66807670	66807670	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	66807670	66807670	C	A	SNP	SYT12	ENST00000393946	human	ensembl	74_37	+1	known	missense	c.617	p.S206Y	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT12	HGNC	ENSG00000173227				81	0	0	37	21	36.2069
CARNS1	0	genome.wustl.edu	37	11	67187257	67187257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	67187257	67187257	G	A	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	missense	c.1061	p.R354Q	0.986	NULL	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				19	0	0	13	8	38.0952
NDUFV1	0	genome.wustl.edu	37	11	67378679	67378679	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	67378679	67378679	G	A	SNP	NDUFV1	ENST00000322776	human	ensembl	74_37	+1	known	splice_site	c.913+1	e6+1	1.000	-	-	-	no_errors	NDUFV1	HGNC	ENSG00000167792				94	0	0	30	18	37.5
OR2AG2	0	genome.wustl.edu	37	11	6789862	6789862	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6789862	6789862	G	A	SNP	OR2AG2	ENST00000338569	human	ensembl	74_37	-1	known	silent	c.327	p.S109	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AG2	HGNC	ENSG00000188124				117	0	0	68	27	28.4211
SUV420H1	0	genome.wustl.edu	37	11	67926444	67926444	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	67926444	67926444	G	T	SNP	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	missense	c.1369	p.H457N	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				100	0	0	62	37	37.3737
OR6A2	0	genome.wustl.edu	37	11	6816380	6816380	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6816380	6816380	G	T	SNP	OR6A2	ENST00000332601	human	ensembl	74_37	-1	known	missense	c.560	p.S187Y	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933				154	0	0	89	55	38.1944
MTL5	0	genome.wustl.edu	37	11	68478501	68478501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68478501	68478501	G	A	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	missense	c.1175	p.S392F	1.000	pfam_CRC	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				70	0	0	38	14	26.9231
MTL5	0	genome.wustl.edu	37	11	68512569	68512569	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68512569	68512569	T	C	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	missense	c.641	p.Q214R	1.000	superfamily_Thionin	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				66	0	0	56	22	28.2051
CPT1A	0	genome.wustl.edu	37	11	68579981	68579981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68579981	68579981	C	T	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.205	p.V69M	0.989	NULL	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090				99	0	0	62	24	27.907
MRPL21	0	genome.wustl.edu	37	11	68663994	68663994	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68663994	68663994	G	A	SNP	MRPL21	ENST00000362034	human	ensembl	74_37	-1	known	nonsense	c.385	p.R129*	1.000	tigrfam_Ribosomal_L21	tigrfam_Ribosomal_L21	-	no_errors	MRPL21	HGNC	ENSG00000197345				240	0	0	108	42	28
OR10A5	0	genome.wustl.edu	37	11	6867289	6867289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6867289	6867289	G	A	SNP	OR10A5	ENST00000379831	human	ensembl	74_37	+1	known	missense	c.388	p.A130T	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A5	HGNC	ENSG00000166363				265	0	0	118	59	33.3333
IGHMBP2	0	genome.wustl.edu	37	11	68676003	68676003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68676003	68676003	G	A	SNP	IGHMBP2	ENST00000255078	human	ensembl	74_37	+1	known	missense	c.451	p.A151T	0.958	tigrfam_DNA_helicase_put	pfam_R3H_ss-bd,pfam_Znf_AN1,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_R3H_ss-bd,smart_Znf_AN1,pfscan_Znf_AN1,pfscan_R3H_ss-bd,tigrfam_DNA_helicase_put	-	no_errors	IGHMBP2	HGNC	ENSG00000132740				98	0	0	38	24	38.7097
MRGPRD	0	genome.wustl.edu	37	11	68747543	68747543	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	68747543	68747543	C	T	SNP	MRGPRD	ENST00000309106	human	ensembl	74_37	-1	known	missense	c.913	p.E305K	0.003	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRD	HGNC	ENSG00000172938				128	0	0	74	33	30.8411
MYEOV	0	genome.wustl.edu	37	11	69063584	69063584	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	69063584	69063584	G	T	SNP	MYEOV	ENST00000308946	human	ensembl	74_37	+1	known	nonsense	c.667	p.E223*	0.001	NULL	NULL	-	no_errors	MYEOV	HGNC	ENSG00000172927				140	0	0	44	32	42.1053
ZNF215	0	genome.wustl.edu	37	11	6977697	6977697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	6977697	6977697	A	G	SNP	ZNF215	ENST00000278319	human	ensembl	74_37	+1	known	missense	c.1489	p.K497E	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF215	HGNC	ENSG00000149054				104	0	0	67	26	27.957
ANO1	0	genome.wustl.edu	37	11	70031744	70031744	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	70031744	70031744	C	A	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	silent	c.2637	p.I879	0.995	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				113	0	0	47	25	34.7222
ANO1	0	genome.wustl.edu	37	11	70031792	70031792	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	70031792	70031792	C	T	SNP	ANO1	ENST00000355303	human	ensembl	74_37	+1	known	silent	c.2685	p.I895	0.210	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO1	HGNC	ENSG00000131620				95	0	0	34	20	37.037
ZNF214	0	genome.wustl.edu	37	11	7021924	7021924	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	7021924	7021924	G	T	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.990	p.F330L	0.946	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				133	0	0	71	32	31.068
PPFIA1	0	genome.wustl.edu	37	11	70221149	70221149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	70221149	70221149	G	A	SNP	PPFIA1	ENST00000253925	human	ensembl	74_37	+1	known	missense	c.3265	p.D1089N	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626				66	0	0	39	11	22
SHANK2	0	genome.wustl.edu	37	11	70507809	70507809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	70507809	70507809	G	A	SNP	SHANK2	ENST00000449833	human	ensembl	74_37	-1	known	missense	c.64	p.R22C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK2	HGNC	ENSG00000162105				247	0	0	132	53	28.6486
NLRP14	0	genome.wustl.edu	37	11	7063729	7063729	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	7063729	7063729	G	T	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.472	p.D158Y	0.000	superfamily_P-loop_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				114	0	0	66	26	28.2609
DHCR7	0	genome.wustl.edu	37	11	71150111	71150111	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71150111	71150111	G	T	SNP	DHCR7	ENST00000355527	human	ensembl	74_37	-1	known	missense	c.645	p.F215L	1.000	pfam_Ergosterol_biosynth_ERG4_ERG24	pfam_Ergosterol_biosynth_ERG4_ERG24	-	no_errors	DHCR7	HGNC	ENSG00000172893				50	0	0	30	11	26.8293
KRTAP5-8	0	genome.wustl.edu	37	11	71249203	71249203	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71249203	71249203	C	T	SNP	KRTAP5-8	ENST00000398534	human	ensembl	74_37	+1	known	silent	c.102	p.C34	1.000	NULL	NULL	-	no_errors	KRTAP5-8	HGNC	ENSG00000241233				391	0	0	200	76	27.5362
NUMA1	0	genome.wustl.edu	37	11	71720125	71720125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71720125	71720125	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.4946	p.R1649Q	0.990	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				83	0	0	31	16	34.0426
NUMA1	0	genome.wustl.edu	37	11	71726580	71726580	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71726580	71726580	C	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.1969	p.A657T	0.424	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497				148	0	0	58	27	31.7647
FOLR3	0	genome.wustl.edu	37	11	71847003	71847003	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71847003	71847003	A	G	SNP	FOLR3	ENST00000456237	human	ensembl	74_37	+1	known	missense	c.5	p.D2G	0.006	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR3	HGNC	ENSG00000110203				258	0	0	141	60	29.8507
ENSG00000256518	0	genome.wustl.edu	37	11	71870559	71870559	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71870559	71870559	A	G	SNP	ENSG00000256518	ENST00000542477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.968	-	-	-	no_errors	RP11-807H22.5	Clone_based_vega_gene	ENSG00000256518				37	0	0	10	8	44.4444
FOLR2	0	genome.wustl.edu	37	11	71929627	71929627	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	71929627	71929627	A	G	SNP	FOLR2	ENST00000449475	human	ensembl	74_37	+1	putative	missense	c.50	p.D17G	0.000	NULL	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457				34	0	0	11	5	31.25
PDE2A	0	genome.wustl.edu	37	11	72290417	72290417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	72290417	72290417	C	T	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	missense	c.2267	p.R756H	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				80	0	0	31	12	27.907
PAAF1	0	genome.wustl.edu	37	11	73602177	73602177	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	73602177	73602177	T	C	SNP	PAAF1	ENST00000310571	human	ensembl	74_37	+1	known	silent	c.213	p.C71	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAAF1	HGNC	ENSG00000175575				35	0	0	31	8	20.5128
C2CD3	0	genome.wustl.edu	37	11	73814566	73814566	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	73814566	73814566	A	T	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.2190	p.N730K	0.003	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				106	0	0	72	26	26.5306
SYT9	0	genome.wustl.edu	37	11	7439350	7439350	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	7439350	7439350	A	G	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	missense	c.1328	p.D443G	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				107	0	0	57	36	38.7097
RNF169	0	genome.wustl.edu	37	11	74521240	74521240	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	74521240	74521240	A	C	SNP	RNF169	ENST00000299563	human	ensembl	74_37	+1	known	missense	c.588	p.E196D	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF169	HGNC	ENSG00000166439				71	0	0	60	21	25.9259
XRRA1	0	genome.wustl.edu	37	11	74563045	74563045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	74563045	74563045	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.1229	p.A410V	0.983	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				124	0	0	46	31	40.2597
XRRA1	0	genome.wustl.edu	37	11	74641361	74641361	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	74641361	74641361	T	G	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.384	p.E128D	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				9	0	0	8	3	27.2727
SLCO2B1	0	genome.wustl.edu	37	11	74913973	74913973	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	74913973	74913973	G	A	SNP	SLCO2B1	ENST00000289575	human	ensembl	74_37	+1	known	silent	c.1791	p.L597	1.000	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491				216	0	0	92	50	35.2113
MOGAT2	0	genome.wustl.edu	37	11	75439872	75439872	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	75439872	75439872	G	T	SNP	MOGAT2	ENST00000198801	human	ensembl	74_37	+1	known	missense	c.688	p.D230Y	0.998	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT2	HGNC	ENSG00000166391				176	0	0	59	33	35.8696
ACER3	0	genome.wustl.edu	37	11	76726121	76726121	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	76726121	76726121	T	G	SNP	ACER3	ENST00000532485	human	ensembl	74_37	+1	known	missense	c.559	p.L187V	0.998	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER3	HGNC	ENSG00000078124				37	0	0	38	15	28.3019
MYO7A	0	genome.wustl.edu	37	11	76900472	76900472	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	76900472	76900472	C	A	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.3587	p.S1196Y	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				121	0	0	45	25	35.7143
PAK1	0	genome.wustl.edu	37	11	77090406	77090406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77090406	77090406	G	A	SNP	PAK1	ENST00000278568	human	ensembl	74_37	-1	known	missense	c.319	p.L107F	1.000	pfam_CRIB_dom,superfamily_WASP_C,smart_CRIB_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK1	HGNC	ENSG00000149269				123	0	0	65	25	27.7778
RSF1	0	genome.wustl.edu	37	11	77412131	77412131	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77412131	77412131	C	A	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	nonsense	c.2143	p.E715*	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				113	0	0	73	43	37.069
RSF1	0	genome.wustl.edu	37	11	77412799	77412799	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77412799	77412799	G	T	SNP	RSF1	ENST00000308488	human	ensembl	74_37	-1	known	missense	c.1475	p.S492Y	0.389	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	RSF1	HGNC	ENSG00000048649				173	0	0	112	54	32.5301
RSF1	0	genome.wustl.edu	37	11	77524560	77524560	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77524560	77524560	G	A	SNP	RSF1	ENST00000530604	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	RSF1	HGNC	ENSG00000048649				71	0	0	47	25	34.7222
KCTD14	0	genome.wustl.edu	37	11	77727688	77727688	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77727688	77727688	C	A	SNP	KCTD14	ENST00000353172	human	ensembl	74_37	-1	known	missense	c.719	p.R240I	0.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD14	HGNC	ENSG00000151364				85	0	0	47	27	36.4865
USP35	0	genome.wustl.edu	37	11	77911746	77911746	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77911746	77911746	G	A	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	silent	c.1089	p.S363	0.992	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				63	0	0	31	25	44.6429
USP35	0	genome.wustl.edu	37	11	77920554	77920554	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	77920554	77920554	G	A	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	silent	c.1653	p.S551	0.001	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				48	0	0	42	21	33.3333
NARS2	0	genome.wustl.edu	37	11	78176991	78176991	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	78176991	78176991	G	A	SNP	NARS2	ENST00000281038	human	ensembl	74_37	-1	known	silent	c.1095	p.F365	1.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-ligase	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-ligase	-	no_errors	NARS2	HGNC	ENSG00000137513				70	0	0	52	23	30.6667
TENM4	0	genome.wustl.edu	37	11	78369748	78369748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	78369748	78369748	C	A	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.7665	p.K2555N	0.959	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				89	0	0	31	22	41.5094
TENM4	0	genome.wustl.edu	37	11	78412982	78412982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	78412982	78412982	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.4676	p.R1559Q	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				111	0	0	54	14	20.5882
TENM4	0	genome.wustl.edu	37	11	78413045	78413045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	78413045	78413045	G	A	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.4613	p.T1538I	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				64	0	0	26	17	39.5349
TENM4	0	genome.wustl.edu	37	11	78440647	78440647	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	78440647	78440647	C	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	silent	c.3180	p.R1060	0.985	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				133	0	0	54	27	33.3333
OR10A6	0	genome.wustl.edu	37	11	7949332	7949332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	7949332	7949332	C	T	SNP	OR10A6	ENST00000309838	human	ensembl	74_37	-1	known	missense	c.878	p.R293Q	0.007	pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393				152	0	0	71	38	34.8624
OR10A6	0	genome.wustl.edu	37	11	7949936	7949936	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	7949936	7949936	T	G	SNP	OR10A6	ENST00000309838	human	ensembl	74_37	-1	known	missense	c.274	p.I92L	0.956	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A6	HGNC	ENSG00000175393				187	0	0	125	68	35.2332
PCF11	0	genome.wustl.edu	37	11	82877043	82877043	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	82877043	82877043	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	silent	c.1104	p.S368	0.968	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				37	0	0	14	6	30
PCF11	0	genome.wustl.edu	37	11	82878277	82878277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	82878277	82878277	G	A	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.1928	p.R643Q	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494				135	0	0	67	40	37.3832
ENSG00000254551	0	genome.wustl.edu	37	11	82920708	82920708	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	82920708	82920708	G	A	SNP	ENSG00000254551	ENST00000531869	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.640	-	-	-	no_errors	RP11-727A23.7	Clone_based_vega_gene	ENSG00000254551				20	0	0	9	5	35.7143
ANKRD42	0	genome.wustl.edu	37	11	82936079	82936079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	82936079	82936079	G	T	SNP	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	missense	c.685	p.D229Y	0.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				97	0	0	53	18	25.3521
STK33	0	genome.wustl.edu	37	11	8413955	8413955	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	8413955	8413955	C	T	SNP	STK33	ENST00000473980	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	STK33	HGNC	ENSG00000130413				79	0	0	31	21	40.3846
STK33	0	genome.wustl.edu	37	11	8496386	8496386	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	8496386	8496386	C	A	SNP	STK33	ENST00000315204	human	ensembl	74_37	-1	known	missense	c.67	p.D23Y	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK33	HGNC	ENSG00000130413				148	0	0	118	52	30.5882
DLG2	0	genome.wustl.edu	37	11	84996399	84996399	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	84996399	84996399	T	G	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.51	p.E17D	1.000	pfam_L27_1,pfscan_L27	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				83	0	0	67	19	22.093
TMEM126A	0	genome.wustl.edu	37	11	85365183	85365183	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	85365183	85365183	C	T	SNP	TMEM126A	ENST00000304511	human	ensembl	74_37	+1	known	nonsense	c.163	p.R55*	1.000	pfam_DUF1370_TMEM126	pfam_DUF1370_TMEM126	-	no_errors	TMEM126A	HGNC	ENSG00000171202				197	1	0.505051	137	60	30.4569
SYTL2	0	genome.wustl.edu	37	11	85436442	85436442	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	85436442	85436442	G	T	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.2630	p.S877Y	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501				129	0	0	77	39	33.6207
TMEM135	0	genome.wustl.edu	37	11	86947710	86947710	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	86947710	86947710	T	C	SNP	TMEM135	ENST00000305494	human	ensembl	74_37	+1	known	missense	c.493	p.Y165H	1.000	NULL	NULL	-	no_errors	TMEM135	HGNC	ENSG00000166575				51	0	0	43	19	30.6452
ST5	0	genome.wustl.edu	37	11	8715670	8715670	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	8715670	8715670	T	G	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	missense	c.3387	p.K1129N	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				97	0	0	62	20	24.3902
ST5	0	genome.wustl.edu	37	11	8724176	8724176	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	8724176	8724176	C	T	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	missense	c.2663	p.R888Q	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444				111	0	0	60	33	35.4839
ST5	0	genome.wustl.edu	37	11	8739286	8739286	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	8739286	8739286	A	G	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	splice_site	c.1629+2	e4+2	1.000	-	-	-	no_errors	ST5	HGNC	ENSG00000166444				81	0	0	34	14	29.1667
GRM5	0	genome.wustl.edu	37	11	88300351	88300351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	88300351	88300351	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2500	p.R834C	1.000	pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				134	0	0	48	40	45.4545
TYR	0	genome.wustl.edu	37	11	88911375	88911375	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	88911375	88911375	A	G	SNP	TYR	ENST00000263321	human	ensembl	74_37	+1	known	missense	c.254	p.Y85C	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498				76	0	0	34	17	33.3333
FOLH1B	0	genome.wustl.edu	37	11	89405123	89405123	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	89405123	89405123	G	T	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				117	0	0	65	33	33.6735
TRIM49	0	genome.wustl.edu	37	11	89537423	89537423	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	89537423	89537423	T	C	SNP	TRIM49	ENST00000329758	human	ensembl	74_37	-1	known	missense	c.215	p.K72R	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49	HGNC	ENSG00000168930				94	0	0	65	17	20.7317
NRIP3	0	genome.wustl.edu	37	11	9007350	9007350	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	9007350	9007350	G	T	SNP	NRIP3	ENST00000309166	human	ensembl	74_37	-1	known	missense	c.470	p.S157Y	1.000	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,superfamily_Peptidase_aspartic_dom	-	no_errors	NRIP3	HGNC	ENSG00000175352				173	0	0	80	44	35.4839
SCUBE2	0	genome.wustl.edu	37	11	9051490	9051490	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	9051490	9051490	G	T	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.2444	p.S815Y	1.000	pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				187	0	0	122	48	28.2353
DENND5A	0	genome.wustl.edu	37	11	9166618	9166618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	9166618	9166618	C	A	SNP	DENND5A	ENST00000328194	human	ensembl	74_37	-1	known	missense	c.3046	p.D1016Y	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pfscan_PLAT/LH2_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5A	HGNC	ENSG00000184014				193	1	0.515464	104	34	24.6377
FAT3	0	genome.wustl.edu	37	11	92086173	92086173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92086173	92086173	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.895	p.E299K	0.996	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				91	0	0	39	27	40.9091
FAT3	0	genome.wustl.edu	37	11	92086393	92086393	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92086393	92086393	T	C	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.1115	p.V372A	0.743	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				45	0	0	18	17	48.5714
FAT3	0	genome.wustl.edu	37	11	92087946	92087946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92087946	92087946	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.2668	p.D890N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				140	1	0.70922	84	40	32.2581
FAT3	0	genome.wustl.edu	37	11	92507255	92507255	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92507255	92507255	T	C	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.4244	p.I1415T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				67	0	0	27	23	46
FAT3	0	genome.wustl.edu	37	11	92532760	92532760	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92532760	92532760	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.6581	p.S2194Y	0.998	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				43	0	0	30	12	28.5714
FAT3	0	genome.wustl.edu	37	11	92577811	92577811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	92577811	92577811	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.11278	p.D3760N	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				26	0	0	10	8	44.4444
HEPHL1	0	genome.wustl.edu	37	11	93800819	93800819	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	93800819	93800819	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	silent	c.966	p.V322	0.029	pfam_Cu-oxidase_2,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333				216	0	0	124	41	24.8485
AMOTL1	0	genome.wustl.edu	37	11	94554964	94554964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	94554964	94554964	G	A	SNP	AMOTL1	ENST00000433060	human	ensembl	74_37	+1	known	missense	c.1390	p.D464N	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025				142	0	0	74	28	27.451
ZNF143	0	genome.wustl.edu	37	11	9522663	9522663	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	9522663	9522663	C	T	SNP	ZNF143	ENST00000396602	human	ensembl	74_37	+1	known	silent	c.993	p.F331	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478				155	0	0	82	30	26.7857
FAM76B	0	genome.wustl.edu	37	11	95512015	95512015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	95512015	95512015	C	T	SNP	FAM76B	ENST00000358780	human	ensembl	74_37	-1	known	missense	c.799	p.D267N	1.000	NULL	NULL	-	no_errors	FAM76B	HGNC	ENSG00000077458				68	0	0	41	17	29.3103
FAM76B	0	genome.wustl.edu	37	11	95512122	95512122	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	95512122	95512122	C	T	SNP	FAM76B	ENST00000358780	human	ensembl	74_37	-1	known	splice_site	c.693-1	e8-1	1.000	-	-	-	no_errors	FAM76B	HGNC	ENSG00000077458				42	0	0	27	18	40
FAM76B	0	genome.wustl.edu	37	11	95516362	95516362	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	95516362	95516362	C	A	SNP	FAM76B	ENST00000358780	human	ensembl	74_37	-1	known	nonsense	c.430	p.E144*	1.000	NULL	NULL	-	no_errors	FAM76B	HGNC	ENSG00000077458				51	0	0	32	15	31.9149
SCYL2	0	genome.wustl.edu	37	12	100732689	100732689	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	100732689	100732689	C	A	SNP	SCYL2	ENST00000360820	human	ensembl	74_37	+1	known	silent	c.2529	p.L843	0.990	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SCYL2	HGNC	ENSG00000136021				363	0	0	201	111	35.5769
SLC17A8	0	genome.wustl.edu	37	12	100806591	100806591	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	100806591	100806591	G	A	SNP	SLC17A8	ENST00000323346	human	ensembl	74_37	+1	known	silent	c.1230	p.S410	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A8	HGNC	ENSG00000179520				198	0	0	105	41	28.0822
GAS2L3	0	genome.wustl.edu	37	12	101017768	101017768	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	101017768	101017768	G	A	SNP	GAS2L3	ENST00000266754	human	ensembl	74_37	+1	known	silent	c.1185	p.P395	0.001	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L3	HGNC	ENSG00000139354				180	1	0.552486	101	50	33.1126
CLEC12A	0	genome.wustl.edu	37	12	10131996	10131996	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10131996	10131996	G	A	SNP	CLEC12A	ENST00000355690	human	ensembl	74_37	+1	known	silent	c.282	p.E94	1.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322				37	0	0	29	9	23.6842
ANO4	0	genome.wustl.edu	37	12	101381342	101381342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	101381342	101381342	C	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.628	p.R210W	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				526	0	0	259	122	32.021
CLEC1B	0	genome.wustl.edu	37	12	10145803	10145803	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10145803	10145803	T	C	SNP	CLEC1B	ENST00000298527	human	ensembl	74_37	-1	known	missense	c.629	p.N210S	0.012	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1B	HGNC	ENSG00000165682				259	0	0	142	79	35.7466
CLEC1B	0	genome.wustl.edu	37	12	10145850	10145850	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10145850	10145850	A	C	SNP	CLEC1B	ENST00000298527	human	ensembl	74_37	-1	known	missense	c.582	p.N194K	0.990	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1B	HGNC	ENSG00000165682				173	0	0	86	37	30.0813
ENSG00000256803	0	genome.wustl.edu	37	12	10168146	10168146	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10168146	10168146	T	G	SNP	ENSG00000256803	ENST00000544225	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-133L14.5	Clone_based_vega_gene	ENSG00000256803				80	0	0	54	26	32.5
MYBPC1	0	genome.wustl.edu	37	12	102036355	102036355	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	102036355	102036355	A	C	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	missense	c.824	p.K275T	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC1	HGNC	ENSG00000196091				24	0	0	18	4	18.1818
MYBPC1	0	genome.wustl.edu	37	12	102055019	102055019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	102055019	102055019	G	A	SNP	MYBPC1	ENST00000361466	human	ensembl	74_37	+1	known	missense	c.2011	p.D671N	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC1	HGNC	ENSG00000196091				37	0	0	19	16	45.7143
DRAM1	0	genome.wustl.edu	37	12	102313940	102313940	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	102313940	102313940	T	C	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	+1	known	silent	c.633	p.G211	0.998	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048				107	0	0	50	31	38.2716
CLEC1A	0	genome.wustl.edu	37	12	10233922	10233922	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10233922	10233922	G	T	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	missense	c.305	p.S102Y	0.995	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048				115	0	0	77	35	31.25
CLEC7A	0	genome.wustl.edu	37	12	10282621	10282621	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10282621	10282621	C	T	SNP	CLEC7A	ENST00000304084	human	ensembl	74_37	-1	known	missense	c.61	p.D21N	0.001	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC7A	HGNC	ENSG00000172243				45	0	0	35	8	18.6047
PAH	0	genome.wustl.edu	37	12	103240677	103240677	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	103240677	103240677	G	A	SNP	PAH	ENST00000553106	human	ensembl	74_37	-1	known	missense	c.965	p.A322V	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Phe-4-hydroxylase_tetra	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Phe-4-hydroxylase_tetra	-	no_errors	PAH	HGNC	ENSG00000171759				96	0	0	48	24	33.3333
TMEM52B	0	genome.wustl.edu	37	12	10339104	10339104	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10339104	10339104	A	C	SNP	TMEM52B	ENST00000381923	human	ensembl	74_37	+1	known	missense	c.223	p.N75H	0.001	NULL	NULL	-	no_errors	TMEM52B	HGNC	ENSG00000165685				109	0	0	60	34	36.1702
GABARAPL1	0	genome.wustl.edu	37	12	10374410	10374410	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10374410	10374410	C	A	SNP	GABARAPL1	ENST00000266458	human	ensembl	74_37	+1	known	missense	c.313	p.L105M	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL1	HGNC	ENSG00000139112				64	0	0	43	20	31.746
STAB2	0	genome.wustl.edu	37	12	103984697	103984697	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	103984697	103984697	C	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.104	p.S35Y	0.282	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				119	0	0	73	39	34.8214
STAB2	0	genome.wustl.edu	37	12	104049338	104049338	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104049338	104049338	C	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	silent	c.1713	p.L571	0.013	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				93	0	0	42	24	36.3636
STAB2	0	genome.wustl.edu	37	12	104089398	104089398	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104089398	104089398	A	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.3446	p.D1149G	0.939	pfam_FAS1_domain,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				132	0	0	81	30	27.027
STAB2	0	genome.wustl.edu	37	12	104098388	104098388	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104098388	104098388	C	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.3896	p.S1299Y	0.503	superfamily_Growth_fac_rcpt_N_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				49	0	0	30	11	26.8293
STAB2	0	genome.wustl.edu	37	12	104136216	104136216	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104136216	104136216	A	G	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.5915	p.N1972S	1.000	smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				213	0	0	106	45	29.8013
HSP90B1	0	genome.wustl.edu	37	12	104326616	104326616	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104326616	104326616	G	T	SNP	HSP90B1	ENST00000299767	human	ensembl	74_37	+1	known	nonsense	c.307	p.E103*	1.000	pirsf_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	pirsf_Hsp90_fam,pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90B1	HGNC	ENSG00000166598				134	0	0	107	50	31.8471
EID3	0	genome.wustl.edu	37	12	104697977	104697977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	104697977	104697977	G	A	SNP	EID3	ENST00000527879	human	ensembl	74_37	+1	known	missense	c.265	p.D89N	0.427	pfam_Nse4_C	pfam_Nse4_C	-	no_errors	EID3	HGNC	ENSG00000255150				155	0	0	88	49	35.7664
ALDH1L2	0	genome.wustl.edu	37	12	105462629	105462629	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	105462629	105462629	A	C	SNP	ALDH1L2	ENST00000258494	human	ensembl	74_37	-1	known	missense	c.462	p.F154L	0.994	pfam_Formyl_transf_N,superfamily_Formyl_transf_N,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L2	HGNC	ENSG00000136010				73	0	0	61	26	29.8851
KIAA1033	0	genome.wustl.edu	37	12	105543428	105543428	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	105543428	105543428	C	A	SNP	KIAA1033	ENST00000332180	human	ensembl	74_37	+1	known	missense	c.2550	p.F850L	1.000	NULL	NULL	-	no_errors	KIAA1033	HGNC	ENSG00000136051				62	0	0	54	20	27.027
NUAK1	0	genome.wustl.edu	37	12	106460770	106460770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	106460770	106460770	C	T	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1796	p.R599H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				77	0	0	40	21	34.4262
NUAK1	0	genome.wustl.edu	37	12	106461428	106461428	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	106461428	106461428	A	C	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1138	p.S380A	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				149	0	0	79	27	25.4717
MTERFD3	0	genome.wustl.edu	37	12	107372416	107372416	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	107372416	107372416	T	C	SNP	MTERFD3	ENST00000240050	human	ensembl	74_37	-1	known	missense	c.77	p.Y26C	0.001	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD3	HGNC	ENSG00000120832				85	0	0	60	26	30.2326
CRY1	0	genome.wustl.edu	37	12	107395696	107395696	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	107395696	107395696	A	G	SNP	CRY1	ENST00000008527	human	ensembl	74_37	-1	known	silent	c.441	p.P147	1.000	pfam_DNA_photolyase_N,superfamily_DNA_photolyase_N	pfam_Photolyase_FAD-bd/Cryptochr_C,pfam_DNA_photolyase_N,superfamily_Photolyase_FAD-bd/Cryptochr_C,superfamily_DNA_photolyase_N	-	no_errors	CRY1	HGNC	ENSG00000008405				129	0	0	81	36	30.7692
PRDM4	0	genome.wustl.edu	37	12	108128239	108128239	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	108128239	108128239	C	T	SNP	PRDM4	ENST00000228437	human	ensembl	74_37	-1	known	silent	c.2154	p.K718	1.000	smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851				246	0	0	144	68	32.0755
WSCD2	0	genome.wustl.edu	37	12	108626627	108626627	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	108626627	108626627	T	G	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.1099	p.F367V	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				83	0	0	39	21	35
DAO	0	genome.wustl.edu	37	12	109283296	109283296	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	109283296	109283296	G	T	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	nonsense	c.361	p.E121*	0.999	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DAO	HGNC	ENSG00000110887				118	0	0	54	28	34.1463
TAS2R8	0	genome.wustl.edu	37	12	10958754	10958754	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10958754	10958754	G	T	SNP	TAS2R8	ENST00000240615	human	ensembl	74_37	-1	known	missense	c.826	p.L276I	0.001	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	TAS2R8	HGNC	ENSG00000121314				56	0	0	46	21	31.3433
ACACB	0	genome.wustl.edu	37	12	109613808	109613808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	109613808	109613808	A	G	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.1289	p.D430G	0.000	pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				155	0	0	86	27	23.8938
ACACB	0	genome.wustl.edu	37	12	109613968	109613968	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	109613968	109613968	G	T	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.1337	p.R446I	0.900	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				443	0	0	285	126	30.6569
ACACB	0	genome.wustl.edu	37	12	109684234	109684234	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	109684234	109684234	A	G	SNP	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	missense	c.5552	p.D1851G	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				92	0	0	63	29	31.5217
FOXN4	0	genome.wustl.edu	37	12	109719237	109719237	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	109719237	109719237	C	T	SNP	FOXN4	ENST00000299162	human	ensembl	74_37	-1	known	silent	c.1269	p.P423	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN4	HGNC	ENSG00000139445				139	0	0	66	25	27.4725
PRR4	0	genome.wustl.edu	37	12	10999769	10999769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	10999769	10999769	G	A	SNP	PRR4	ENST00000228811	human	ensembl	74_37	-1	known	missense	c.298	p.R100C	0.000	NULL	NULL	-	no_errors	PRR4	HGNC	ENSG00000111215				290	0	0	145	72	33.1797
TRPV4	0	genome.wustl.edu	37	12	110252352	110252352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	110252352	110252352	C	T	SNP	TRPV4	ENST00000261740	human	ensembl	74_37	-1	known	missense	c.250	p.D84N	1.000	prints_TRPV4_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,prints_TRPV4_channel,tigrfam_TRP_channel	-	no_errors	TRPV4	HGNC	ENSG00000111199				75	0	0	35	11	23.913
ATP2A2	0	genome.wustl.edu	37	12	110780120	110780120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	110780120	110780120	G	A	SNP	ATP2A2	ENST00000539276	human	ensembl	74_37	+1	known	missense	c.2185	p.A729T	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A2	HGNC	ENSG00000174437				158	0	0	74	33	30.8411
MYL2	0	genome.wustl.edu	37	12	111352028	111352028	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	111352028	111352028	A	C	SNP	MYL2	ENST00000228841	human	ensembl	74_37	-1	known	missense	c.236	p.F79C	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL2	HGNC	ENSG00000111245				100	0	0	48	34	41.4634
MYL2	0	genome.wustl.edu	37	12	111356915	111356915	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	111356915	111356915	A	C	SNP	MYL2	ENST00000228841	human	ensembl	74_37	-1	known	missense	c.86	p.F29C	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL2	HGNC	ENSG00000111245				48	0	0	24	28	53.8462
CUX2	0	genome.wustl.edu	37	12	111749952	111749952	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	111749952	111749952	C	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.1949	p.A650V	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				41	0	0	16	7	30.4348
HECTD4	0	genome.wustl.edu	37	12	112667668	112667668	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	112667668	112667668	A	C	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.5837	p.L1946R	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				52	0	0	36	13	26.5306
HECTD4	0	genome.wustl.edu	37	12	112721041	112721041	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	112721041	112721041	G	A	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	silent	c.969	p.G323	0.003	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				52	0	0	28	17	37.7778
PTPN11	0	genome.wustl.edu	37	12	112939971	112939971	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	112939971	112939971	A	C	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	missense	c.1623	p.E541D	1.000	pirsf_Tyr_Pase_non-rcpt_typ-6/11	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295				115	0	0	77	38	33.0435
OAS1	0	genome.wustl.edu	37	12	113346601	113346601	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	113346601	113346601	C	T	SNP	OAS1	ENST00000445409	human	ensembl	74_37	+1	known	silent	c.441	p.F147	0.473	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS1	HGNC	ENSG00000089127				158	0	0	85	36	29.7521
OAS3	0	genome.wustl.edu	37	12	113384669	113384669	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	113384669	113384669	G	A	SNP	OAS3	ENST00000228928	human	ensembl	74_37	+1	known	missense	c.758	p.R253Q	0.735	pfam_2-5-oligoAdlate_synth_1_dom2/C	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS3	HGNC	ENSG00000111331				48	0	0	28	17	37.7778
OAS2	0	genome.wustl.edu	37	12	113416560	113416560	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	113416560	113416560	A	G	SNP	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	silent	c.147	p.E49	0.000	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335				74	0	0	40	10	20
PLBD2	0	genome.wustl.edu	37	12	113812324	113812324	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	113812324	113812324	G	A	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	missense	c.589	p.E197K	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				20	0	0	7	6	46.1538
PLBD2	0	genome.wustl.edu	37	12	113822728	113822728	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	113822728	113822728	G	A	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	silent	c.1191	p.V397	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				53	0	0	19	2	9.52381
ENSG00000257359	0	genome.wustl.edu	37	12	114374664	114374664	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	114374664	114374664	A	C	SNP	ENSG00000257359	ENST00000550206	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	RP11-780K2.1	Clone_based_vega_gene	ENSG00000257359				42	0	0	26	12	31.5789
TBX5	0	genome.wustl.edu	37	12	114832669	114832669	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	114832669	114832669	C	T	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	silent	c.540	p.Q180	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				295	0	0	173	67	27.9167
PRB2	0	genome.wustl.edu	37	12	11546911	11546911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	11546911	11546911	C	T	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	missense	c.101	p.G34E	0.000	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				251	0	0	103	54	34.3949
MED13L	0	genome.wustl.edu	37	12	116425055	116425055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	116425055	116425055	G	A	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.3973	p.R1325C	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				64	0	0	31	24	43.6364
LINC00173	0	genome.wustl.edu	37	12	116972465	116972465	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	116972465	116972465	G	A	SNP	LINC00173	ENST00000480237	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00173	HGNC	ENSG00000196668				93	0	0	42	17	28.8136
C12orf49	0	genome.wustl.edu	37	12	117158242	117158242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	117158242	117158242	G	A	SNP	C12orf49	ENST00000547630	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	1.000	NULL	NULL	-	no_errors	C12orf49	HGNC	ENSG00000111412				197	0	0	117	56	32.3699
NOS1	0	genome.wustl.edu	37	12	117685282	117685282	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	117685282	117685282	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.2694	p.C898	0.923	pfam_Flavodoxin/NO_synth,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				125	0	0	42	17	28.8136
NOS1	0	genome.wustl.edu	37	12	117691546	117691546	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	117691546	117691546	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	nonsense	c.2545	p.R849*	1.000	pfam_Flavodoxin/NO_synth,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				113	0	0	67	34	33.6634
NOS1	0	genome.wustl.edu	37	12	117723132	117723132	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	117723132	117723132	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.1296	p.F432	0.993	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				45	0	0	18	8	30.7692
RFC5	0	genome.wustl.edu	37	12	118467596	118467596	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	118467596	118467596	C	T	SNP	RFC5	ENST00000454402	human	ensembl	74_37	+1	known	nonsense	c.892	p.R298*	1.000	pfam_Rep_factorC_C_dom,superfamily_DNA_pol3_clamp-load_cplx_C	pfam_Rep_factorC_C_dom,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_DUF815,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC5	HGNC	ENSG00000111445				138	0	0	109	45	29.2208
SUDS3	0	genome.wustl.edu	37	12	118828948	118828948	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	118828948	118828948	A	C	SNP	SUDS3	ENST00000397564	human	ensembl	74_37	+1	known	silent	c.381	p.R127	1.000	pfam_Sds3	pfam_Sds3	-	no_errors	SUDS3	HGNC	ENSG00000111707				105	0	0	90	9	9.09091
CCDC60	0	genome.wustl.edu	37	12	119943093	119943093	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	119943093	119943093	G	T	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	nonsense	c.868	p.E290*	0.866	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				204	0	0	110	55	33.3333
PRKAB1	0	genome.wustl.edu	37	12	120118142	120118142	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	120118142	120118142	C	T	SNP	PRKAB1	ENST00000537057	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRKAB1	HGNC	ENSG00000111725				41	0	0	16	8	33.3333
CIT	0	genome.wustl.edu	37	12	120128041	120128041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	120128041	120128041	C	T	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.5975	p.R1992Q	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				45	0	0	21	7	25
CIT	0	genome.wustl.edu	37	12	120204980	120204980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	120204980	120204980	C	T	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	missense	c.2089	p.E697K	1.000	pirsf_Citron_Rho-interacting_kinase	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pirsf_Citron_Rho-interacting_kinase,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CIT	HGNC	ENSG00000122966				194	0	0	102	45	30.6122
MSI1	0	genome.wustl.edu	37	12	120795629	120795629	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	120795629	120795629	T	C	SNP	MSI1	ENST00000257552	human	ensembl	74_37	-1	known	missense	c.524	p.N175S	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097				49	0	0	26	13	33.3333
ACADS	0	genome.wustl.edu	37	12	121175984	121175984	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	121175984	121175984	T	C	SNP	ACADS	ENST00000411593	human	ensembl	74_37	+1	novel	missense	c.605	p.L202P	0.000	superfamily_AcylCoA_DH/oxidase_NM_dom	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom	-	no_errors	ACADS	HGNC	ENSG00000122971				25	0	0	15	3	16.6667
OASL	0	genome.wustl.edu	37	12	121458569	121458569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	121458569	121458569	G	A	SNP	OASL	ENST00000257570	human	ensembl	74_37	-1	known	missense	c.1340	p.A447V	0.287	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_2-5-oligoadenylate_synth_N,pfscan_Ubiquitin_supergroup	-	no_errors	OASL	HGNC	ENSG00000135114				156	0	0	77	38	33.0435
ENSG00000201945	0	genome.wustl.edu	37	12	121544906	121544906	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	121544906	121544906	A	C	SNP	ENSG00000201945	ENST00000365075	human	ensembl	74_37	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORA70	RFAM	ENSG00000201945				72	0	0	43	12	21.8182
P2RX4	0	genome.wustl.edu	37	12	121666569	121666569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	121666569	121666569	C	T	SNP	P2RX4	ENST00000337233	human	ensembl	74_37	+1	known	missense	c.647	p.S216L	0.008	pfam_P2X_purnocptor,prints_P2X4_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124				173	0	0	84	45	34.8837
P2RX4	0	genome.wustl.edu	37	12	121666584	121666584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	121666584	121666584	C	T	SNP	P2RX4	ENST00000337233	human	ensembl	74_37	+1	known	missense	c.662	p.A221V	0.104	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X4_purnocptor,prints_P2X_purnocptor,prints_P2X1_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX4	HGNC	ENSG00000135124				172	0	0	79	39	33.0508
ENSG00000256742	0	genome.wustl.edu	37	12	122018824	122018824	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	122018824	122018824	A	G	SNP	ENSG00000256742	ENST00000541574	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP13-941N14.1	Clone_based_vega_gene	ENSG00000256742				177	0	0	71	26	26.8041
MORN3	0	genome.wustl.edu	37	12	122097145	122097145	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	122097145	122097145	T	C	SNP	MORN3	ENST00000355329	human	ensembl	74_37	-1	known	silent	c.255	p.G85	0.113	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN3	HGNC	ENSG00000139714				144	0	0	64	32	33.3333
LRRC43	0	genome.wustl.edu	37	12	122685454	122685454	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	122685454	122685454	G	A	SNP	LRRC43	ENST00000339777	human	ensembl	74_37	+1	known	silent	c.1782	p.L594	0.000	NULL	NULL	-	no_errors	LRRC43	HGNC	ENSG00000158113				94	0	0	54	26	32.5
VPS33A	0	genome.wustl.edu	37	12	122748207	122748207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	122748207	122748207	G	A	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	missense	c.208	p.R70C	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719				61	0	0	45	21	31.8182
CLIP1	0	genome.wustl.edu	37	12	122757586	122757586	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	122757586	122757586	A	C	SNP	CLIP1	ENST00000540338	human	ensembl	74_37	-1	known	missense	c.4153	p.F1385V	1.000	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Znf_CCHC,superfamily_Prefoldin,pfscan_CAP-Gly_domain	-	no_errors	CLIP1	HGNC	ENSG00000130779				88	0	0	55	16	22.5352
RSRC2	0	genome.wustl.edu	37	12	123001843	123001843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123001843	123001843	G	A	SNP	RSRC2	ENST00000331738	human	ensembl	74_37	-1	known	missense	c.533	p.S178F	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC	ENSG00000111011				153	0	0	86	49	36.2963
KNTC1	0	genome.wustl.edu	37	12	123075984	123075984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123075984	123075984	G	A	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.4229	p.R1410H	0.859	NULL	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				196	0	0	125	64	33.8624
KNTC1	0	genome.wustl.edu	37	12	123097759	123097759	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123097759	123097759	A	C	SNP	KNTC1	ENST00000333479	human	ensembl	74_37	+1	known	missense	c.5723	p.K1908T	0.998	pfam_RZZ-complex_KNTC1/ROD_C	pfam_RZZ-complex_KNTC1/ROD_C,superfamily_Quino_amine_DH_bsu,superfamily_WD40_repeat_dom,superfamily_PAH	-	no_errors	KNTC1	HGNC	ENSG00000184445				129	0	0	62	38	38
HCAR2	0	genome.wustl.edu	37	12	123186857	123186857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123186857	123186857	C	T	SNP	HCAR2	ENST00000328880	human	ensembl	74_37	-1	known	missense	c.974	p.R325H	0.952	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR2	HGNC	ENSG00000182782				217	0	0	155	19	10.9195
HCAR3	0	genome.wustl.edu	37	12	123200148	123200148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123200148	123200148	C	A	SNP	HCAR3	ENST00000528880	human	ensembl	74_37	-1	known	missense	c.1137	p.E379D	0.001	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HCAR3	HGNC	ENSG00000255398				214	0	0	127	57	30.9783
HCAR3	0	genome.wustl.edu	37	12	123200311	123200311	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123200311	123200311	C	T	SNP	HCAR3	ENST00000528880	human	ensembl	74_37	-1	known	missense	c.974	p.R325H	0.974	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HCAR3	HGNC	ENSG00000255398				55	0	0	30	11	26.8293
HCAR1	0	genome.wustl.edu	37	12	123214130	123214130	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123214130	123214130	C	T	SNP	HCAR1	ENST00000356987	human	ensembl	74_37	-1	known	missense	c.757	p.D253N	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	HCAR1	HGNC	ENSG00000196917				144	0	0	67	26	27.957
HIP1R	0	genome.wustl.edu	37	12	123333139	123333139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123333139	123333139	G	A	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.284	p.R95Q	1.000	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				106	0	0	42	28	40
ARL6IP4	0	genome.wustl.edu	37	12	123467128	123467128	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123467128	123467128	T	G	SNP	ARL6IP4	ENST00000392435	human	ensembl	74_37	+1	known	missense	c.1012	p.L338V	0.002	NULL	pfam_Nucl_RNA-splicing_assoc_SR-25	-	no_errors	ARL6IP4	HGNC	ENSG00000182196				130	0	0	67	4	5.6338
MPHOSPH9	0	genome.wustl.edu	37	12	123649915	123649915	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123649915	123649915	C	A	SNP	MPHOSPH9	ENST00000392425	human	ensembl	74_37	-1	known	nonsense	c.2245	p.E749*	0.996	NULL	superfamily_Prefoldin	-	no_errors	MPHOSPH9	HGNC	ENSG00000051825				132	0	0	85	46	35.1145
RILPL1	0	genome.wustl.edu	37	12	123984017	123984017	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	123984017	123984017	T	G	SNP	RILPL1	ENST00000376874	human	ensembl	74_37	-1	known	missense	c.527	p.E176A	1.000	pfam_JNK/Rab-associated_protein-1_N	pfam_JNK/Rab-associated_protein-1_N,pfam_RILP	-	no_errors	RILPL1	HGNC	ENSG00000188026				109	0	0	44	31	41.3333
TMED2	0	genome.wustl.edu	37	12	124074954	124074954	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124074954	124074954	G	A	SNP	TMED2	ENST00000262225	human	ensembl	74_37	+1	known	missense	c.439	p.E147K	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED2	HGNC	ENSG00000086598				43	0	0	26	14	35
DNAH10	0	genome.wustl.edu	37	12	124257443	124257443	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124257443	124257443	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.276	p.E92D	0.948	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				167	0	0	85	56	39.7163
DNAH10	0	genome.wustl.edu	37	12	124323173	124323173	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124323173	124323173	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.4719	p.D1573	0.886	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				160	0	0	90	43	32.3308
DNAH10	0	genome.wustl.edu	37	12	124330340	124330340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124330340	124330340	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.5200	p.D1734N	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				158	0	0	86	30	25.8621
DNAH10	0	genome.wustl.edu	37	12	124333363	124333363	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124333363	124333363	C	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.5682	p.L1894	0.336	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				36	0	0	27	11	28.9474
DNAH10	0	genome.wustl.edu	37	12	124345647	124345647	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124345647	124345647	G	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.6484	p.D2162Y	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				62	0	0	41	6	12.766
DNAH10	0	genome.wustl.edu	37	12	124377783	124377783	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124377783	124377783	T	G	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.8645	p.I2882S	0.999	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				45	0	0	18	16	47.0588
DNAH10	0	genome.wustl.edu	37	12	124377848	124377848	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124377848	124377848	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.8710	p.L2904	0.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				87	0	0	41	28	40.5797
NCOR2	0	genome.wustl.edu	37	12	124870323	124870323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	124870323	124870323	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.1987	p.D663N	1.000	superfamily_Homeodomain-like	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498				227	0	0	87	52	37.4101
AACS	0	genome.wustl.edu	37	12	125561052	125561052	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	125561052	125561052	A	G	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.253	p.K85E	0.997	tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				209	0	0	128	8	5.88235
AACS	0	genome.wustl.edu	37	12	125613907	125613907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	125613907	125613907	G	A	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.1450	p.E484K	1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				270	0	0	136	71	34.2995
AACS	0	genome.wustl.edu	37	12	125626770	125626770	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	125626770	125626770	T	G	SNP	AACS	ENST00000316519	human	ensembl	74_37	+1	known	missense	c.2014	p.F672V	1.000	NULL	pfam_AMP-dep_Synth/Lig,tigrfam_Acac_CoA_synth	-	no_errors	AACS	HGNC	ENSG00000081760				90	0	0	54	23	29.8701
DUSP16	0	genome.wustl.edu	37	12	12630251	12630251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	12630251	12630251	C	T	SNP	DUSP16	ENST00000228862	human	ensembl	74_37	-1	known	missense	c.1514	p.R505Q	0.494	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP16	HGNC	ENSG00000111266				126	0	0	75	29	27.8846
FZD10	0	genome.wustl.edu	37	12	130648529	130648529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	130648529	130648529	G	A	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.1042	p.E348K	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				88	0	0	35	26	42.623
MIR614	0	genome.wustl.edu	37	12	13068773	13068773	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	13068773	13068773	G	A	SNP	MIR614	ENST00000385082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR614	HGNC	ENSG00000207817				73	0	0	32	26	44.8276
STX2	0	genome.wustl.edu	37	12	131297517	131297517	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	131297517	131297517	G	A	SNP	STX2	ENST00000392373	human	ensembl	74_37	-1	known	nonsense	c.265	p.R89*	0.442	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_Syntaxin_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX2	HGNC	ENSG00000111450				77	0	0	59	31	34.4444
RAN	0	genome.wustl.edu	37	12	131359262	131359262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	131359262	131359262	G	A	SNP	RAN	ENST00000392369	human	ensembl	74_37	+1	known	missense	c.419	p.R140Q	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAN	HGNC	ENSG00000132341				128	0	0	61	24	28.2353
GSG1	0	genome.wustl.edu	37	12	13237933	13237933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	13237933	13237933	C	T	SNP	GSG1	ENST00000324458	human	ensembl	74_37	-1	known	missense	c.991	p.D331N	0.927	NULL	pfam_GSG-1	-	no_errors	GSG1	HGNC	ENSG00000111305				13	0	0	1	2	66.6667
PUS1	0	genome.wustl.edu	37	12	132416843	132416843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	132416843	132416843	G	A	SNP	PUS1	ENST00000376649	human	ensembl	74_37	+1	known	missense	c.427	p.A143T	1.000	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	pfam_PsdUridine_synth_TruA_a/b_dom,superfamily_PsdUridine_synth_cat_dom,tigrfam_PsdUridine_synth_TruA	-	no_errors	PUS1	HGNC	ENSG00000177192				48	0	0	34	22	39.2857
EP400	0	genome.wustl.edu	37	12	132464278	132464278	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	132464278	132464278	A	C	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.1483	p.S495R	0.002	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				52	0	0	25	7	21.875
EP400	0	genome.wustl.edu	37	12	132510285	132510285	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	132510285	132510285	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.5058	p.V1686	0.949	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				42	0	0	17	8	32
POLE	0	genome.wustl.edu	37	12	133209378	133209378	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	133209378	133209378	T	C	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.6008	p.Y2003C	1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				99	0	0	48	21	30.4348
POLE	0	genome.wustl.edu	37	12	133250289	133250289	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	133250289	133250289	C	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	missense	c.1231	p.V411L	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084				293	0	0	148	70	32.1101
ANKLE2	0	genome.wustl.edu	37	12	133311027	133311027	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	133311027	133311027	G	T	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	missense	c.1835	p.A612D	0.922	NULL	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915				188	1	0.529101	89	35	28.2258
ZNF268	0	genome.wustl.edu	37	12	133764590	133764590	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	133764590	133764590	C	T	SNP	ZNF268	ENST00000228289	human	ensembl	74_37	+1	known	missense	c.166	p.R56C	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF268	HGNC	ENSG00000090612				14	0	0	11	3	21.4286
ATF7IP	0	genome.wustl.edu	37	12	14577784	14577784	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	14577784	14577784	A	C	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.935	p.K312T	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				98	0	0	59	39	39.7959
C12orf60	0	genome.wustl.edu	37	12	14976593	14976593	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	14976593	14976593	G	T	SNP	C12orf60	ENST00000330828	human	ensembl	74_37	+1	known	missense	c.724	p.A242S	0.000	NULL	NULL	-	no_errors	C12orf60	HGNC	ENSG00000182993				56	0	0	40	8	16.6667
ART4	0	genome.wustl.edu	37	12	14995923	14995923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	14995923	14995923	C	T	SNP	ART4	ENST00000228936	human	ensembl	74_37	-1	known	missense	c.125	p.R42K	0.217	NULL	pfam_ART,prints_ART	-	no_errors	ART4	HGNC	ENSG00000111339				33	0	0	14	11	44
ERP27	0	genome.wustl.edu	37	12	15073929	15073929	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	15073929	15073929	G	A	SNP	ERP27	ENST00000266397	human	ensembl	74_37	-1	known	silent	c.387	p.A129	0.003	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055				123	0	0	64	33	34.0206
ERP27	0	genome.wustl.edu	37	12	15087795	15087795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	15087795	15087795	G	A	SNP	ERP27	ENST00000266397	human	ensembl	74_37	-1	known	missense	c.328	p.R110C	0.457	superfamily_Thioredoxin-like_fold	superfamily_Thioredoxin-like_fold	-	no_errors	ERP27	HGNC	ENSG00000139055				109	0	0	67	32	32.3232
ARHGDIB	0	genome.wustl.edu	37	12	15103555	15103555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	15103555	15103555	G	A	SNP	ARHGDIB	ENST00000228945	human	ensembl	74_37	-1	known	missense	c.92	p.S31F	1.000	pfam_Rho_GDI,superfamily_Ig_E-set	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIB	HGNC	ENSG00000111348				159	0	0	89	38	29.9213
EPS8	0	genome.wustl.edu	37	12	15793747	15793747	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	15793747	15793747	G	A	SNP	EPS8	ENST00000281172	human	ensembl	74_37	-1	known	nonsense	c.1711	p.R571*	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8	HGNC	ENSG00000151491				116	0	0	73	43	37.069
PIK3C2G	0	genome.wustl.edu	37	12	18552625	18552625	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	18552625	18552625	T	G	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	missense	c.2159	p.F720C	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144				55	0	0	57	27	32.1429
LRTM2	0	genome.wustl.edu	37	12	1943890	1943890	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	1943890	1943890	G	A	SNP	LRTM2	ENST00000543730	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.033	-	-	-	no_errors	LRTM2	HGNC	ENSG00000166159				48	0	0	29	15	34.0909
PLEKHA5	0	genome.wustl.edu	37	12	19459655	19459655	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	19459655	19459655	G	A	SNP	PLEKHA5	ENST00000510738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				69	0	0	49	22	30.9859
DCP1B	0	genome.wustl.edu	37	12	2058449	2058449	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	2058449	2058449	A	G	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.1576	p.S526P	0.995	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				87	0	0	37	15	28.8462
SLCO1B3	0	genome.wustl.edu	37	12	21033812	21033812	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	21033812	21033812	T	C	SNP	SLCO1B3	ENST00000553473	human	ensembl	74_37	+1	known	missense	c.1355	p.V452A	0.037	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700				112	0	0	82	40	32.7869
SLCO1B1	0	genome.wustl.edu	37	12	21355460	21355460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	21355460	21355460	T	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.1171	p.F391L	0.070	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				30	0	0	33	16	32.6531
SLCO1B1	0	genome.wustl.edu	37	12	21392082	21392082	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	21392082	21392082	T	G	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.2035	p.F679V	0.001	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				89	0	0	83	41	33.0645
PYROXD1	0	genome.wustl.edu	37	12	21602535	21602535	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	21602535	21602535	G	A	SNP	PYROXD1	ENST00000240651	human	ensembl	74_37	+1	known	silent	c.324	p.K108	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_FAD_pyr_nucl-diS_OxRdtase	-	no_errors	PYROXD1	HGNC	ENSG00000121350				36	0	0	18	15	45.4545
LDHB	0	genome.wustl.edu	37	12	21807557	21807557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	21807557	21807557	C	T	SNP	LDHB	ENST00000350669	human	ensembl	74_37	-1	known	missense	c.49	p.A17T	0.900	NULL	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHB	HGNC	ENSG00000111716				150	0	0	99	37	27.2059
CMAS	0	genome.wustl.edu	37	12	22214262	22214262	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	22214262	22214262	T	A	SNP	CMAS	ENST00000229329	human	ensembl	74_37	+1	known	missense	c.836	p.V279D	1.000	superfamily_HAD-like_dom	pfam_Cytidylyl_trans,superfamily_HAD-like_dom	-	no_errors	CMAS	HGNC	ENSG00000111726				115	0	0	83	37	30.8333
CACNA1C	0	genome.wustl.edu	37	12	2224703	2224703	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	2224703	2224703	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.363	p.V121	0.001	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				59	0	0	44	23	34.3284
C2CD5	0	genome.wustl.edu	37	12	22623827	22623827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	22623827	22623827	C	T	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	missense	c.2377	p.A793T	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731				50	0	0	45	14	23.7288
C2CD5	0	genome.wustl.edu	37	12	22676481	22676481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	22676481	22676481	C	T	SNP	C2CD5	ENST00000333957	human	ensembl	74_37	-1	known	missense	c.679	p.D227N	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	C2CD5	HGNC	ENSG00000111731				91	0	0	66	43	39.4495
SOX5	0	genome.wustl.edu	37	12	24048769	24048769	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	24048769	24048769	C	T	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	silent	c.228	p.E76	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532				350	0	0	208	86	29.2517
BCAT1	0	genome.wustl.edu	37	12	24995140	24995140	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	24995140	24995140	A	C	SNP	BCAT1	ENST00000261192	human	ensembl	74_37	-1	known	silent	c.693	p.L231	0.944	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT1	HGNC	ENSG00000060982				45	0	0	40	16	28.5714
C12orf77	0	genome.wustl.edu	37	12	25148944	25148944	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	25148944	25148944	G	A	SNP	C12orf77	ENST00000549828	human	ensembl	74_37	-1	known	silent	c.204	p.N68	0.000	NULL	NULL	-	no_errors	C12orf77	HGNC	ENSG00000226397				61	0	0	33	15	31.25
CASC1	0	genome.wustl.edu	37	12	25264706	25264706	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	25264706	25264706	C	A	SNP	CASC1	ENST00000395987	human	ensembl	74_37	-1	known	missense	c.1779	p.K593N	0.989	NULL	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307				58	0	0	32	15	31.9149
CASC1	0	genome.wustl.edu	37	12	25297436	25297436	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	25297436	25297436	C	A	SNP	CASC1	ENST00000395987	human	ensembl	74_37	-1	known	missense	c.865	p.D289Y	0.000	pfam_Casc1_domain	pfam_Casc1_domain,prints_Casc1	-	no_errors	CASC1	HGNC	ENSG00000118307				186	0	0	108	55	33.7423
KRAS	0	genome.wustl.edu	37	12	25378562	25378562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	25378562	25378562	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.436	p.A146T	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				96	0	0	71	29	29
CACNA1C	0	genome.wustl.edu	37	12	2602492	2602492	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	2602492	2602492	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	silent	c.1053	p.F351	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				306	0	0	134	86	39.0909
BHLHE41	0	genome.wustl.edu	37	12	26276620	26276620	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	26276620	26276620	T	G	SNP	BHLHE41	ENST00000242728	human	ensembl	74_37	-1	known	missense	c.289	p.K97Q	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	BHLHE41	HGNC	ENSG00000123095				168	0	0	94	51	35.1724
ITPR2	0	genome.wustl.edu	37	12	26596550	26596550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	26596550	26596550	G	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.6376	p.L2126F	1.000	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				75	0	0	40	21	34.4262
ITPR2	0	genome.wustl.edu	37	12	26752221	26752221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	26752221	26752221	C	T	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	missense	c.3859	p.E1287K	1.000	pfam_Ca-rel_channel,superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				221	0	0	139	59	29.798
ITPR2	0	genome.wustl.edu	37	12	26775334	26775334	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	26775334	26775334	C	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	nonsense	c.3127	p.E1043*	1.000	superfamily_ARM-type_fold	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				34	0	0	26	9	25.7143
ITPR2	0	genome.wustl.edu	37	12	26811002	26811002	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	26811002	26811002	C	A	SNP	ITPR2	ENST00000381340	human	ensembl	74_37	-1	known	nonsense	c.1948	p.E650*	1.000	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR2	HGNC	ENSG00000123104				64	0	0	47	20	29.8507
ASUN	0	genome.wustl.edu	37	12	27064188	27064188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	27064188	27064188	G	A	SNP	ASUN	ENST00000261191	human	ensembl	74_37	-1	known	missense	c.1868	p.S623L	1.000	pfam_Cell_cycle_regulator_Mat89Bb	pfam_Cell_cycle_regulator_Mat89Bb	-	no_errors	ASUN	HGNC	ENSG00000064102				110	0	0	86	40	31.746
ARNTL2	0	genome.wustl.edu	37	12	27533205	27533205	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	27533205	27533205	C	T	SNP	ARNTL2	ENST00000266503	human	ensembl	74_37	+1	known	missense	c.352	p.R118W	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_PAS_fold,pfam_PAS_fold_3,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	ARNTL2	HGNC	ENSG00000029153				97	0	0	58	27	31.7647
PPFIBP1	0	genome.wustl.edu	37	12	27813821	27813821	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	27813821	27813821	C	T	SNP	PPFIBP1	ENST00000318304	human	ensembl	74_37	+1	known	silent	c.909	p.I303	0.984	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841				48	0	0	35	20	36.3636
PTHLH	0	genome.wustl.edu	37	12	28116612	28116612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	28116612	28116612	C	T	SNP	PTHLH	ENST00000354417	human	ensembl	74_37	-1	known	missense	c.193	p.A65T	0.991	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494				235	0	0	145	60	29.2683
LOC100506606	0	genome.wustl.edu	37	12	29446462	29446462	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	29446462	29446462	T	G	SNP	LOC100506606	ENST00000553105	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-996F15.2	Clone_based_vega_gene	ENSG00000257176				86	0	0	57	35	38.0435
FOXM1	0	genome.wustl.edu	37	12	2968582	2968582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	2968582	2968582	G	A	SNP	FOXM1	ENST00000342628	human	ensembl	74_37	-1	known	missense	c.1628	p.S543L	0.018	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXM1	HGNC	ENSG00000111206				223	0	0	84	61	42.069
IPO8	0	genome.wustl.edu	37	12	30837302	30837302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	30837302	30837302	C	T	SNP	IPO8	ENST00000256079	human	ensembl	74_37	-1	known	missense	c.256	p.E86K	1.000	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO8	HGNC	ENSG00000133704				179	0	0	107	55	33.9506
CAPRIN2	0	genome.wustl.edu	37	12	30869579	30869579	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	30869579	30869579	C	T	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	missense	c.2327	p.R776Q	0.987	pfam_Caprin-1_C	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888				261	0	0	142	64	31.068
TEAD4	0	genome.wustl.edu	37	12	3149557	3149557	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	3149557	3149557	G	A	SNP	TEAD4	ENST00000359864	human	ensembl	74_37	+1	known	silent	c.1218	p.E406	1.000	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD4	HGNC	ENSG00000197905				92	0	0	41	20	32.7869
AMN1	0	genome.wustl.edu	37	12	31850304	31850304	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	31850304	31850304	C	A	SNP	AMN1	ENST00000281471	human	ensembl	74_37	-1	known	missense	c.582	p.K194N	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	AMN1	HGNC	ENSG00000151743				84	0	0	55	26	32.0988
FGD4	0	genome.wustl.edu	37	12	32735043	32735043	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	32735043	32735043	A	C	SNP	FGD4	ENST00000427716	human	ensembl	74_37	+1	known	missense	c.242	p.K81T	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132				156	0	0	67	55	45.082
SLC6A13	0	genome.wustl.edu	37	12	331772	331772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	331772	331772	C	T	SNP	SLC6A13	ENST00000343164	human	ensembl	74_37	-1	known	missense	c.1441	p.E481K	0.996	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379				27	0	0	15	9	37.5
SYT10	0	genome.wustl.edu	37	12	33559799	33559799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	33559799	33559799	A	C	SNP	SYT10	ENST00000228567	human	ensembl	74_37	-1	known	missense	c.1002	p.I334M	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT10	HGNC	ENSG00000110975				95	0	0	70	34	32.6923
SLC6A13	0	genome.wustl.edu	37	12	335650	335650	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	335650	335650	G	A	SNP	SLC6A13	ENST00000343164	human	ensembl	74_37	-1	known	silent	c.966	p.S322	0.927	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379				56	0	0	35	17	32.6923
CPNE8	0	genome.wustl.edu	37	12	39161514	39161514	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	39161514	39161514	C	T	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	silent	c.498	p.A166	0.868	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				95	0	0	79	36	31.3043
KIF21A	0	genome.wustl.edu	37	12	39703566	39703566	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	39703566	39703566	G	A	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.4102	p.R1368C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				39	0	0	21	12	36.3636
ABCD2	0	genome.wustl.edu	37	12	39998622	39998622	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	39998622	39998622	G	A	SNP	ABCD2	ENST00000308666	human	ensembl	74_37	-1	known	silent	c.1347	p.S449	0.000	superfamily_ABC1_TM_dom	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD2	HGNC	ENSG00000173208				91	0	0	91	35	27.7778
C12orf40	0	genome.wustl.edu	37	12	40076662	40076662	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	40076662	40076662	G	A	SNP	C12orf40	ENST00000324616	human	ensembl	74_37	+1	known	silent	c.936	p.E312	0.086	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116				84	0	0	68	29	29.8969
LRRK2	0	genome.wustl.edu	37	12	40645114	40645114	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	40645114	40645114	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.1039	p.L347	0.047	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				40	0	0	21	16	43.2432
LRRK2	0	genome.wustl.edu	37	12	40681202	40681202	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	40681202	40681202	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.2550	p.S850	0.014	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				66	0	0	33	33	50
LRRK2	0	genome.wustl.edu	37	12	40715849	40715849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	40715849	40715849	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.5183	p.R1728H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				44	0	0	37	22	37.2881
CNTN1	0	genome.wustl.edu	37	12	41316077	41316077	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	41316077	41316077	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.247	p.D83N	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				87	0	0	57	27	32.1429
CNTN1	0	genome.wustl.edu	37	12	41327516	41327516	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	41327516	41327516	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.821	p.R274Q	0.985	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				111	1	0.892857	85	35	29.1667
PDZRN4	0	genome.wustl.edu	37	12	41582289	41582289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	41582289	41582289	C	T	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.32	p.A11V	0.318	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				18	0	0	9	10	52.6316
PDZRN4	0	genome.wustl.edu	37	12	41967456	41967456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	41967456	41967456	C	T	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.2875	p.R959C	0.998	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				82	0	0	54	22	28.9474
GXYLT1	0	genome.wustl.edu	37	12	42512847	42512847	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	42512847	42512847	G	A	SNP	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	silent	c.441	p.F147	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233				89	0	0	63	19	23.1707
PPHLN1	0	genome.wustl.edu	37	12	42836453	42836453	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	42836453	42836453	A	G	SNP	PPHLN1	ENST00000395568	human	ensembl	74_37	+1	known	silent	c.1035	p.G345	0.466	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283				318	0	0	178	72	28.8
PRICKLE1	0	genome.wustl.edu	37	12	42854435	42854435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	42854435	42854435	G	A	SNP	PRICKLE1	ENST00000345127	human	ensembl	74_37	-1	known	missense	c.1672	p.P558S	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE1	HGNC	ENSG00000139174				129	0	0	96	7	6.79612
KDM5A	0	genome.wustl.edu	37	12	430229	430229	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	430229	430229	C	A	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	nonsense	c.2473	p.E825*	1.000	pfam_Lys_sp_deMease_like_dom	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				183	0	0	113	50	30.6748
KDM5A	0	genome.wustl.edu	37	12	432777	432777	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	432777	432777	C	A	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	missense	c.2139	p.K713N	1.000	pfam_Znf_C5HC2	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614				119	0	0	92	36	28.125
ADAMTS20	0	genome.wustl.edu	37	12	43771280	43771280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	43771280	43771280	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.4883	p.R1628Q	0.088	superfamily_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				47	0	0	33	9	21.4286
ADAMTS20	0	genome.wustl.edu	37	12	43777440	43777440	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	43777440	43777440	G	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.4718	p.S1573Y	0.999	NULL	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				55	0	0	25	15	37.5
ADAMTS20	0	genome.wustl.edu	37	12	43840416	43840416	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	43840416	43840416	A	C	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.2179	p.F727V	1.000	pfam_ADAM_spacer1	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				55	0	0	28	15	34.8837
ADAMTS20	0	genome.wustl.edu	37	12	43847773	43847773	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	43847773	43847773	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.1697	p.S566N	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157				28	0	0	26	6	18.75
NELL2	0	genome.wustl.edu	37	12	44913847	44913847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	44913847	44913847	G	A	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.2491	p.R831C	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				99	0	0	51	25	32.8947
NELL2	0	genome.wustl.edu	37	12	44915858	44915858	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	44915858	44915858	G	A	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	silent	c.2250	p.C750	1.000	smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				86	0	0	55	24	30.3797
NELL2	0	genome.wustl.edu	37	12	45173782	45173782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	45173782	45173782	C	T	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.509	p.G170D	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613				155	0	0	91	38	29.4574
ANO6	0	genome.wustl.edu	37	12	45740823	45740823	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	45740823	45740823	G	A	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.298	p.E100K	0.998	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				85	0	0	37	19	33.9286
SCAF11	0	genome.wustl.edu	37	12	46320292	46320292	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	46320292	46320292	A	G	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	silent	c.3192	p.G1064	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				109	0	0	68	33	32.6733
SCAF11	0	genome.wustl.edu	37	12	46320408	46320408	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	46320408	46320408	C	A	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	nonsense	c.3076	p.E1026*	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				191	0	0	171	70	29.0456
SCAF11	0	genome.wustl.edu	37	12	46326965	46326965	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	46326965	46326965	C	A	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	missense	c.683	p.R228I	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218				88	0	0	57	21	26.9231
DYRK4	0	genome.wustl.edu	37	12	4716511	4716511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	4716511	4716511	G	A	SNP	DYRK4	ENST00000010132	human	ensembl	74_37	+1	known	missense	c.973	p.A325T	0.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK4	HGNC	ENSG00000010219				110	1	0.900901	52	25	32.4675
SLC38A4	0	genome.wustl.edu	37	12	47178396	47178396	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	47178396	47178396	A	G	SNP	SLC38A4	ENST00000266579	human	ensembl	74_37	-1	known	missense	c.422	p.L141S	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A4	HGNC	ENSG00000139209				78	0	0	55	33	37.5
PCED1B	0	genome.wustl.edu	37	12	47629778	47629778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	47629778	47629778	C	T	SNP	PCED1B	ENST00000432328	human	ensembl	74_37	+1	known	missense	c.932	p.P311L	0.000	NULL	NULL	-	no_errors	PCED1B	HGNC	ENSG00000179715				115	0	0	53	27	33.75
RPAP3	0	genome.wustl.edu	37	12	48096524	48096524	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	48096524	48096524	C	A	SNP	RPAP3	ENST00000005386	human	ensembl	74_37	-1	known	missense	c.100	p.D34Y	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	RPAP3	HGNC	ENSG00000005175				31	0	0	35	17	32.6923
COL2A1	0	genome.wustl.edu	37	12	48380929	48380929	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	48380929	48380929	A	C	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.1297	p.F433V	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				151	0	0	42	30	41.6667
GALNT8	0	genome.wustl.edu	37	12	4855352	4855352	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	4855352	4855352	C	A	SNP	GALNT8	ENST00000252318	human	ensembl	74_37	+1	known	missense	c.1101	p.F367L	0.994	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT8	HGNC	ENSG00000130035				131	0	0	84	24	22.2222
C12orf54	0	genome.wustl.edu	37	12	48881840	48881840	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	48881840	48881840	G	T	SNP	C12orf54	ENST00000548913	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C12orf54	HGNC	ENSG00000177627				40	0	0	25	6	19.3548
OR8S1	0	genome.wustl.edu	37	12	48919915	48919915	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	48919915	48919915	C	A	SNP	OR8S1	ENST00000310194	human	ensembl	74_37	+1	known	silent	c.501	p.V167	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376				152	0	0	90	27	23.0769
CCNT1	0	genome.wustl.edu	37	12	49087086	49087086	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	49087086	49087086	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	silent	c.1911	p.S637	0.985	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				103	0	0	55	27	32.9268
CCNT1	0	genome.wustl.edu	37	12	49099624	49099624	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	49099624	49099624	T	G	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	missense	c.299	p.K100T	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				94	0	0	48	31	39.2405
CCDC65	0	genome.wustl.edu	37	12	49298822	49298822	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	49298822	49298822	G	T	SNP	CCDC65	ENST00000266984	human	ensembl	74_37	+1	known	nonsense	c.226	p.E76*	1.000	NULL	NULL	-	no_errors	CCDC65	HGNC	ENSG00000139537				103	0	0	76	36	32.1429
TUBA1B	0	genome.wustl.edu	37	12	49522457	49522457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	49522457	49522457	G	A	SNP	TUBA1B	ENST00000336023	human	ensembl	74_37	-1	known	missense	c.640	p.R214C	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA1B	HGNC	ENSG00000123416				89	0	0	56	11	16.4179
MCRS1	0	genome.wustl.edu	37	12	49959911	49959911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	49959911	49959911	C	T	SNP	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	missense	c.137	p.R46Q	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778				183	0	0	71	44	38.2609
PRPF40B	0	genome.wustl.edu	37	12	50028234	50028234	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	50028234	50028234	A	G	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	missense	c.932	p.D311G	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	PRPF40B	HGNC	ENSG00000110844				144	0	0	58	39	40.2062
NCKAP5L	0	genome.wustl.edu	37	12	50196943	50196943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	50196943	50196943	C	A	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.129	p.E43D	1.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				112	0	0	47	17	26.5625
KCNA1	0	genome.wustl.edu	37	12	5021705	5021705	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	5021705	5021705	C	T	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	silent	c.1161	p.I387	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262				539	0	0	279	128	31.4496
AQP5	0	genome.wustl.edu	37	12	50357924	50357924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	50357924	50357924	C	T	SNP	AQP5	ENST00000293599	human	ensembl	74_37	+1	known	missense	c.578	p.A193V	0.979	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_5,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_5,tigrfam_MIP	-	no_errors	AQP5	HGNC	ENSG00000161798				100	0	0	51	23	31.0811
LARP4	0	genome.wustl.edu	37	12	50860866	50860866	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	50860866	50860866	G	T	SNP	LARP4	ENST00000429001	human	ensembl	74_37	+1	known	missense	c.1526	p.R509M	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4	HGNC	ENSG00000161813				70	0	0	50	32	39.0244
DIP2B	0	genome.wustl.edu	37	12	51069154	51069154	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	51069154	51069154	T	G	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.839	p.L280R	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				75	0	0	57	31	35.2273
DIP2B	0	genome.wustl.edu	37	12	51133264	51133264	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	51133264	51133264	C	A	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.4249	p.H1417N	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084				107	1	0.925926	83	21	20.1923
KCNA5	0	genome.wustl.edu	37	12	5154543	5154543	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	5154543	5154543	C	A	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	silent	c.1230	p.I410	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				58	0	0	37	15	28.8462
DAZAP2	0	genome.wustl.edu	37	12	51636389	51636389	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	51636389	51636389	T	C	SNP	DAZAP2	ENST00000549555	human	ensembl	74_37	+1	known	missense	c.577	p.F193L	1.000	NULL	pfam_DAZ_assoc-2	-	no_errors	DAZAP2	HGNC	ENSG00000183283				32	0	0	10	6	37.5
ANKRD33	0	genome.wustl.edu	37	12	52284396	52284396	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	52284396	52284396	T	C	SNP	ANKRD33	ENST00000340970	human	ensembl	74_37	+1	known	silent	c.291	p.V97	0.001	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD33	HGNC	ENSG00000167612				35	0	0	19	18	48.6486
KRT82	0	genome.wustl.edu	37	12	52799669	52799669	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	52799669	52799669	G	A	SNP	KRT82	ENST00000257974	human	ensembl	74_37	-1	known	silent	c.393	p.F131	0.953	pfam_IF	pfam_IF,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT82	HGNC	ENSG00000161850				499	0	0	276	139	33.494
KRT6B	0	genome.wustl.edu	37	12	52843820	52843820	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	52843820	52843820	C	A	SNP	KRT6B	ENST00000252252	human	ensembl	74_37	-1	known	missense	c.792	p.E264D	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479				209	0	0	159	14	8.09249
KRT6C	0	genome.wustl.edu	37	12	52862857	52862857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	52862857	52862857	A	G	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	missense	c.1684	p.Y562H	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				122	0	0	64	33	34.0206
KRT6C	0	genome.wustl.edu	37	12	52865480	52865480	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	52865480	52865480	C	A	SNP	KRT6C	ENST00000252250	human	ensembl	74_37	-1	known	missense	c.792	p.E264D	1.000	pfam_IF,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6C	HGNC	ENSG00000170465				157	0	0	119	33	21.7105
KRT1	0	genome.wustl.edu	37	12	53074020	53074020	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53074020	53074020	C	T	SNP	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	missense	c.113	p.R38H	0.918	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768				76	0	0	37	26	41.2698
KRT76	0	genome.wustl.edu	37	12	53170559	53170559	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53170559	53170559	C	T	SNP	KRT76	ENST00000332411	human	ensembl	74_37	-1	known	missense	c.517	p.D173N	1.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069				96	0	0	49	24	32.8767
KRT4	0	genome.wustl.edu	37	12	53202570	53202570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53202570	53202570	C	T	SNP	KRT4	ENST00000293774	human	ensembl	74_37	-1	known	missense	c.1121	p.R374H	1.000	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477				145	0	0	71	40	36.036
CSAD	0	genome.wustl.edu	37	12	53564258	53564258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53564258	53564258	G	A	SNP	CSAD	ENST00000267085	human	ensembl	74_37	-1	known	missense	c.677	p.A226V	1.000	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				104	0	0	62	26	29.5455
ESPL1	0	genome.wustl.edu	37	12	53680078	53680078	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53680078	53680078	C	T	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.3558	p.V1186	0.003	NULL	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				163	0	0	83	35	29.661
ESPL1	0	genome.wustl.edu	37	12	53687096	53687096	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53687096	53687096	C	T	SNP	ESPL1	ENST00000257934	human	ensembl	74_37	+1	known	silent	c.6201	p.R2067	0.882	pfam_Peptidase_C50	pfam_Peptidase_C50,superfamily_DsrEFH-like	-	no_errors	ESPL1	HGNC	ENSG00000135476				83	0	0	63	4	5.97015
MAP3K12	0	genome.wustl.edu	37	12	53880773	53880773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	53880773	53880773	T	C	SNP	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	missense	c.304	p.I102V	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				105	0	0	58	28	32.5581
HOXC12	0	genome.wustl.edu	37	12	54350167	54350167	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	54350167	54350167	G	A	SNP	HOXC12	ENST00000243103	human	ensembl	74_37	+1	known	silent	c.666	p.S222	0.997	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC12	HGNC	ENSG00000123407				231	0	0	111	64	36.5714
HOXC6	0	genome.wustl.edu	37	12	54423519	54423519	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	54423519	54423519	C	A	SNP	HOXC6	ENST00000243108	human	ensembl	74_37	+1	known	missense	c.481	p.H161N	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXC6	HGNC	ENSG00000197757				231	0	0	114	43	27.3885
HOXC5	0	genome.wustl.edu	37	12	54428171	54428171	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	54428171	54428171	C	T	SNP	HOXC5	ENST00000312492	human	ensembl	74_37	+1	known	silent	c.564	p.I188	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC5	HGNC	ENSG00000172789				140	0	0	72	45	38.4615
SMUG1	0	genome.wustl.edu	37	12	54575840	54575840	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	54575840	54575840	C	T	SNP	SMUG1	ENST00000505662	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMUG1	HGNC	ENSG00000123415				131	0	0	56	25	30.8642
OR6C3	0	genome.wustl.edu	37	12	55725556	55725556	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	55725556	55725556	T	G	SNP	OR6C3	ENST00000379667	human	ensembl	74_37	+1	known	missense	c.72	p.I24M	0.968	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329				129	0	0	97	46	32.1678
OR6C70	0	genome.wustl.edu	37	12	55863404	55863404	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	55863404	55863404	A	G	SNP	OR6C70	ENST00000327335	human	ensembl	74_37	-1	known	silent	c.519	p.D173	0.994	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C70	HGNC	ENSG00000184954				113	0	0	96	45	31.9149
OR6C68	0	genome.wustl.edu	37	12	55886733	55886733	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	55886733	55886733	C	A	SNP	OR6C68	ENST00000379662	human	ensembl	74_37	+1	known	nonsense	c.587	p.S196*	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR6C68	HGNC	ENSG00000205327				70	0	0	39	20	33.8983
MMP19	0	genome.wustl.edu	37	12	56231717	56231717	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56231717	56231717	A	G	SNP	MMP19	ENST00000322569	human	ensembl	74_37	-1	known	missense	c.970	p.F324L	0.318	superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP19	HGNC	ENSG00000123342				132	0	0	62	28	31.1111
MMP19	0	genome.wustl.edu	37	12	56235154	56235154	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56235154	56235154	C	T	SNP	MMP19	ENST00000547487	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MMP19	HGNC	ENSG00000123342				17	0	0	11	5	31.25
PMEL	0	genome.wustl.edu	37	12	56349139	56349139	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56349139	56349139	T	G	SNP	PMEL	ENST00000360714	human	ensembl	74_37	-1	known	missense	c.1790	p.E597A	0.911	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	PMEL	HGNC	ENSG00000185664				214	0	0	126	72	36.3636
PMEL	0	genome.wustl.edu	37	12	56349922	56349922	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56349922	56349922	C	T	SNP	PMEL	ENST00000360714	human	ensembl	74_37	-1	known	missense	c.1436	p.R479Q	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	PMEL	HGNC	ENSG00000185664				132	0	0	70	28	28.5714
ESYT1	0	genome.wustl.edu	37	12	56526515	56526515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56526515	56526515	G	A	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	missense	c.1174	p.E392K	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641				92	0	0	43	19	30.6452
SMARCC2	0	genome.wustl.edu	37	12	56559121	56559121	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56559121	56559121	A	G	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	silent	c.3120	p.V1040	0.995	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				123	1	0.806452	50	30	37.5
SLC39A5	0	genome.wustl.edu	37	12	56631136	56631136	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56631136	56631136	C	T	SNP	SLC39A5	ENST00000419232	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.807	-	-	-	no_errors	SLC39A5	HGNC	ENSG00000139540				73	0	0	42	13	23.6364
ANKRD52	0	genome.wustl.edu	37	12	56648032	56648032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56648032	56648032	G	A	SNP	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	missense	c.725	p.A242V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				302	0	0	170	69	28.8703
STAT2	0	genome.wustl.edu	37	12	56740662	56740662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56740662	56740662	C	T	SNP	STAT2	ENST00000314128	human	ensembl	74_37	-1	known	missense	c.1802	p.R601H	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT2_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT2	HGNC	ENSG00000170581				136	0	0	68	33	32.6733
APOF	0	genome.wustl.edu	37	12	56755504	56755504	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56755504	56755504	G	A	SNP	APOF	ENST00000398189	human	ensembl	74_37	-1	known	silent	c.486	p.V162	0.000	NULL	NULL	-	no_errors	APOF	HGNC	ENSG00000175336				27	0	0	25	4	13.7931
HSD17B6	0	genome.wustl.edu	37	12	57167906	57167906	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	57167906	57167906	C	T	SNP	HSD17B6	ENST00000322165	human	ensembl	74_37	+1	known	silent	c.270	p.I90	0.135	pfam_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B6	HGNC	ENSG00000025423				100	0	0	63	23	26.7442
HSD17B6	0	genome.wustl.edu	37	12	57180939	57180939	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	57180939	57180939	A	C	SNP	HSD17B6	ENST00000322165	human	ensembl	74_37	+1	known	missense	c.767	p.N256T	0.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B6	HGNC	ENSG00000025423				113	0	0	61	35	36.4583
MYO1A	0	genome.wustl.edu	37	12	57441820	57441820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	57441820	57441820	G	T	SNP	MYO1A	ENST00000300119	human	ensembl	74_37	-1	known	missense	c.183	p.F61L	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1A	HGNC	ENSG00000166866				87	0	0	44	20	31.25
PIP4K2C	0	genome.wustl.edu	37	12	57993209	57993209	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	57993209	57993209	C	T	SNP	PIP4K2C	ENST00000354947	human	ensembl	74_37	+1	known	silent	c.687	p.S229	1.000	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	pfam_PInositol-4-P-5-kinase_core,smart_PInositol-4P-5-kinase_core_sub	-	no_errors	PIP4K2C	HGNC	ENSG00000166908				77	0	0	43	20	31.746
ARHGEF25	0	genome.wustl.edu	37	12	58005727	58005727	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	58005727	58005727	G	A	SNP	ARHGEF25	ENST00000286494	human	ensembl	74_37	+1	known	missense	c.50	p.R17Q	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				25	0	0	21	5	19.2308
ARHGEF25	0	genome.wustl.edu	37	12	58010244	58010244	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	58010244	58010244	A	G	SNP	ARHGEF25	ENST00000333972	human	ensembl	74_37	+1	known	missense	c.1715	p.E572G	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF25	HGNC	ENSG00000240771				73	0	0	38	13	25.4902
SLC26A10	0	genome.wustl.edu	37	12	58015518	58015518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	58015518	58015518	G	A	SNP	SLC26A10	ENST00000320442	human	ensembl	74_37	+1	known	missense	c.601	p.E201K	0.997	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A10	HGNC	ENSG00000135502				26	0	0	13	7	35
B4GALNT1	0	genome.wustl.edu	37	12	58024083	58024083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	58024083	58024083	G	A	SNP	B4GALNT1	ENST00000552798	human	ensembl	74_37	-1	known	missense	c.523	p.R175C	0.980	NULL	NULL	-	no_errors	B4GALNT1	HGNC	ENSG00000135454				70	0	0	34	10	22.7273
CYP27B1	0	genome.wustl.edu	37	12	58159172	58159172	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	58159172	58159172	A	G	SNP	CYP27B1	ENST00000228606	human	ensembl	74_37	-1	known	missense	c.497	p.V166A	0.704	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27B1	HGNC	ENSG00000111012				31	0	0	7	5	41.6667
SLC16A7	0	genome.wustl.edu	37	12	60169004	60169004	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	60169004	60169004	C	T	SNP	SLC16A7	ENST00000261187	human	ensembl	74_37	+1	known	nonsense	c.928	p.R310*	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A7	HGNC	ENSG00000118596				154	0	0	96	52	35.1351
VWF	0	genome.wustl.edu	37	12	6058967	6058967	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6058967	6058967	A	G	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.8238	p.D2746	1.000	pirsf_VWF,smart_Cys_knot_C,pfscan_Cys_knot_C	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				150	0	0	76	33	30.2752
VWF	0	genome.wustl.edu	37	12	6132884	6132884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6132884	6132884	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.3292	p.A1098T	0.137	pirsf_VWF,pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				34	0	0	31	12	27.907
VWF	0	genome.wustl.edu	37	12	6181527	6181527	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6181527	6181527	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.1079	p.G360D	0.946	pirsf_VWF,smart_VWC_out,smart_VWF_C	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				83	0	0	36	22	37.931
VWF	0	genome.wustl.edu	37	12	6232023	6232023	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6232023	6232023	C	A	SNP	VWF	ENST00000572068	human	ensembl	74_37	-1	known	missense	c.34	p.D12Y	0.001	NULL	pfam_VWF_type-D,smart_VWF_type-D	-	no_errors	VWF	HGNC	ENSG00000110799				149	0	0	66	31	31.9588
MON2	0	genome.wustl.edu	37	12	62902072	62902072	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	62902072	62902072	G	T	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	nonsense	c.796	p.E266*	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987				82	0	0	69	42	37.8378
PPM1H	0	genome.wustl.edu	37	12	63042363	63042363	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	63042363	63042363	T	C	SNP	PPM1H	ENST00000228705	human	ensembl	74_37	-1	known	missense	c.1451	p.D484G	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1H	HGNC	ENSG00000111110				88	0	0	48	26	35.1351
CD9	0	genome.wustl.edu	37	12	6334636	6334636	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6334636	6334636	C	T	SNP	CD9	ENST00000009180	human	ensembl	74_37	+1	known	silent	c.111	p.F37	0.976	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD9	HGNC	ENSG00000010278				111	1	0.892857	67	26	27.957
MSRB3	0	genome.wustl.edu	37	12	65720710	65720710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	65720710	65720710	G	A	SNP	MSRB3	ENST00000355192	human	ensembl	74_37	+1	known	missense	c.202	p.E68K	1.000	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	-	no_errors	MSRB3	HGNC	ENSG00000174099				36	0	0	18	12	40
MSRB3	0	genome.wustl.edu	37	12	65857005	65857005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	65857005	65857005	C	T	SNP	MSRB3	ENST00000355192	human	ensembl	74_37	+1	known	missense	c.482	p.S161L	0.997	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	-	no_errors	MSRB3	HGNC	ENSG00000174099				148	0	0	63	34	35.0515
B4GALNT3	0	genome.wustl.edu	37	12	665919	665919	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	665919	665919	A	G	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	missense	c.2267	p.D756G	0.194	pfam_Chond_GalNAc	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				58	0	0	27	11	28.9474
HELB	0	genome.wustl.edu	37	12	66712497	66712497	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	66712497	66712497	G	T	SNP	HELB	ENST00000247815	human	ensembl	74_37	+1	known	missense	c.2080	p.D694Y	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	HELB	HGNC	ENSG00000127311				89	0	0	77	36	31.8584
GRIP1	0	genome.wustl.edu	37	12	66742845	66742845	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	66742845	66742845	C	A	SNP	GRIP1	ENST00000359742	human	ensembl	74_37	-1	known	missense	c.3341	p.S1114I	0.261	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	GRIP1	HGNC	ENSG00000155974				280	0	0	166	74	30.8333
CHD4	0	genome.wustl.edu	37	12	6692411	6692411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6692411	6692411	C	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4013	p.R1338I	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				298	1	0.334448	150	83	35.6223
ACRBP	0	genome.wustl.edu	37	12	6749577	6749577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6749577	6749577	C	T	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	missense	c.1189	p.D397N	0.005	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				63	0	0	30	12	28.5714
DYRK2	0	genome.wustl.edu	37	12	68050891	68050891	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	68050891	68050891	C	T	SNP	DYRK2	ENST00000344096	human	ensembl	74_37	+1	known	silent	c.204	p.G68	0.878	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK2	HGNC	ENSG00000127334				65	0	0	29	19	39.5833
IL26	0	genome.wustl.edu	37	12	68619407	68619407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	68619407	68619407	C	T	SNP	IL26	ENST00000229134	human	ensembl	74_37	-1	known	missense	c.130	p.A44T	0.001	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core	-	no_errors	IL26	HGNC	ENSG00000111536				346	1	0.288184	178	79	30.7393
MDM1	0	genome.wustl.edu	37	12	68696398	68696398	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	68696398	68696398	A	G	SNP	MDM1	ENST00000303145	human	ensembl	74_37	-1	known	splice_site	c.1972+2	e12+2	1.000	-	-	-	no_errors	MDM1	HGNC	ENSG00000111554				52	0	0	33	23	41.0714
NUP107	0	genome.wustl.edu	37	12	69128606	69128606	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	69128606	69128606	A	C	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.2381	p.K794T	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				43	0	0	31	15	32.6087
CD4	0	genome.wustl.edu	37	12	6925323	6925323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	6925323	6925323	G	A	SNP	CD4	ENST00000011653	human	ensembl	74_37	+1	known	missense	c.709	p.E237K	0.601	pfam_CD4-extracel,smart_Ig_sub,prints_Ag_CD4	pfam_CD4-extracel,pfam_Ig_C2-set,pfam_Tcell_CD4_Cterm,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,pfam_NK_rcpt_2B4_Ig_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Ag_CD4	-	no_errors	CD4	HGNC	ENSG00000010610				233	0	0	86	53	38.1295
C12orf57	0	genome.wustl.edu	37	12	7053657	7053657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7053657	7053657	T	C	SNP	C12orf57	ENST00000229281	human	ensembl	74_37	+1	known	missense	c.71	p.I24T	1.000	NULL	NULL	-	no_errors	C12orf57	HGNC	ENSG00000111678				35	0	0	17	5	22.7273
CNOT2	0	genome.wustl.edu	37	12	70723256	70723256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	70723256	70723256	C	T	SNP	CNOT2	ENST00000229195	human	ensembl	74_37	+1	known	missense	c.292	p.R98C	1.000	NULL	pfam_NOT	-	no_errors	CNOT2	HGNC	ENSG00000111596				88	0	0	67	24	26.3736
PTPRB	0	genome.wustl.edu	37	12	70925842	70925842	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	70925842	70925842	A	G	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	silent	c.6477	p.L2159	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				71	0	0	35	26	42.623
PTPRB	0	genome.wustl.edu	37	12	70986133	70986133	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	70986133	70986133	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.1709	p.R570Q	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				107	0	0	68	26	27.6596
PTPRB	0	genome.wustl.edu	37	12	71002899	71002899	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	71002899	71002899	T	G	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.929	p.N310T	0.988	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				155	0	0	75	44	36.9748
PTPRR	0	genome.wustl.edu	37	12	71056292	71056292	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	71056292	71056292	G	A	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	nonsense	c.1591	p.R531*	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				50	0	0	40	22	35.4839
PTPRR	0	genome.wustl.edu	37	12	71286586	71286586	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	71286586	71286586	C	T	SNP	PTPRR	ENST00000283228	human	ensembl	74_37	-1	known	missense	c.230	p.R77H	0.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRR	HGNC	ENSG00000153233				204	0	0	133	69	34.1584
ZFC3H1	0	genome.wustl.edu	37	12	72029233	72029233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	72029233	72029233	C	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.2228	p.R743Q	1.000	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				104	0	0	88	47	34.8148
TBC1D15	0	genome.wustl.edu	37	12	72266715	72266715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	72266715	72266715	G	A	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	missense	c.136	p.E46K	1.000	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749				153	0	0	124	49	28.3237
TBC1D15	0	genome.wustl.edu	37	12	72266725	72266725	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	72266725	72266725	T	C	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	missense	c.146	p.V49A	1.000	pfam_DUF3548	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749				156	0	0	124	48	27.907
TPH2	0	genome.wustl.edu	37	12	72372774	72372774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	72372774	72372774	G	A	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.848	p.S283N	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				207	0	0	116	59	33.7143
CLSTN3	0	genome.wustl.edu	37	12	7295598	7295598	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7295598	7295598	C	T	SNP	CLSTN3	ENST00000266546	human	ensembl	74_37	+1	known	silent	c.1674	p.F558	1.000	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN3	HGNC	ENSG00000139182				90	0	0	33	19	36.5385
ENSG00000238823	0	genome.wustl.edu	37	12	73278	73278	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	73278	73278	G	A	SNP	ENSG00000238823	ENST00000458783	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC215219.1	Clone_based_ensembl_gene	ENSG00000238823				141	0	0	142	45	24.0642
ACSM4	0	genome.wustl.edu	37	12	7475867	7475867	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7475867	7475867	A	C	SNP	ACSM4	ENST00000399422	human	ensembl	74_37	+1	novel	missense	c.1163	p.K388T	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM4	HGNC	ENSG00000215009				27	0	0	11	8	42.1053
ENSG00000257434	0	genome.wustl.edu	37	12	75436769	75436769	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	75436769	75436769	A	G	SNP	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434				25	0	0	13	8	38.0952
CD163L1	0	genome.wustl.edu	37	12	7556295	7556295	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7556295	7556295	C	G	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.1244	p.S415T	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				200	0	0	135	62	31.4721
GLIPR1L1	0	genome.wustl.edu	37	12	75737646	75737646	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	75737646	75737646	T	G	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	silent	c.348	p.A116	0.008	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401				53	0	0	35	22	38.5965
KRR1	0	genome.wustl.edu	37	12	75897739	75897739	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	75897739	75897739	T	C	SNP	KRR1	ENST00000229214	human	ensembl	74_37	-1	known	missense	c.776	p.K259R	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	KRR1	HGNC	ENSG00000111615				148	0	0	109	44	28.7582
KRR1	0	genome.wustl.edu	37	12	75902105	75902105	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	75902105	75902105	T	G	SNP	KRR1	ENST00000229214	human	ensembl	74_37	-1	known	missense	c.207	p.E69D	0.945	NULL	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	KRR1	HGNC	ENSG00000111615				62	0	0	43	22	33.8462
PHLDA1	0	genome.wustl.edu	37	12	76424776	76424776	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	76424776	76424776	T	C	SNP	PHLDA1	ENST00000266671	human	ensembl	74_37	-1	known	missense	c.746	p.Y249C	1.000	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	PHLDA1	HGNC	ENSG00000139289				108	0	0	47	26	35.6164
OSBPL8	0	genome.wustl.edu	37	12	76778098	76778098	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	76778098	76778098	A	C	SNP	OSBPL8	ENST00000261183	human	ensembl	74_37	-1	known	nonsense	c.1566	p.Y522*	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039				52	0	0	41	15	26.7857
ZDHHC17	0	genome.wustl.edu	37	12	77235880	77235880	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	77235880	77235880	G	T	SNP	ZDHHC17	ENST00000334822	human	ensembl	74_37	+1	known	missense	c.1260	p.K420N	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase,prints_Ankyrin_rpt	-	no_errors	ZDHHC17	HGNC	ENSG00000186908				24	0	0	20	11	35.4839
ZDHHC17	0	genome.wustl.edu	37	12	77244667	77244667	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	77244667	77244667	C	T	SNP	ZDHHC17	ENST00000334822	human	ensembl	74_37	+1	known	nonsense	c.1801	p.R601*	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_DHHC_palmitoyltrfase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_DHHC_palmitoyltrfase,prints_Ankyrin_rpt	-	no_errors	ZDHHC17	HGNC	ENSG00000186908				103	1	0.961538	96	50	34.2466
LOC100049716	0	genome.wustl.edu	37	12	772726	772726	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	772726	772726	A	G	SNP	LOC100049716	ENST00000543884	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-218M22.1	Clone_based_vega_gene	ENSG00000177406				73	0	0	28	17	37.7778
E2F7	0	genome.wustl.edu	37	12	77439830	77439830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	77439830	77439830	C	T	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.817	p.D273N	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				119	0	0	63	36	36.3636
NAV3	0	genome.wustl.edu	37	12	78388626	78388626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	78388626	78388626	G	A	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.715	p.A239T	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				63	0	0	63	26	29.2135
NAV3	0	genome.wustl.edu	37	12	78513721	78513721	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	78513721	78513721	C	T	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	nonsense	c.3745	p.R1249*	0.999	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				75	0	0	38	21	35.5932
NAV3	0	genome.wustl.edu	37	12	78598740	78598740	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	78598740	78598740	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.6860	p.E2287G	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798				69	0	0	45	25	35.7143
DPPA3	0	genome.wustl.edu	37	12	7867847	7867847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7867847	7867847	G	A	SNP	DPPA3	ENST00000345088	human	ensembl	74_37	+1	known	missense	c.151	p.E51K	0.000	NULL	NULL	-	no_errors	DPPA3	HGNC	ENSG00000187569				142	0	0	67	37	35.5769
SLC2A14	0	genome.wustl.edu	37	12	7972091	7972091	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	7972091	7972091	G	T	SNP	SLC2A14	ENST00000396589	human	ensembl	74_37	-1	known	missense	c.1127	p.S376Y	0.424	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A14	HGNC	ENSG00000173262				141	0	0	80	42	34.4262
OTOGL	0	genome.wustl.edu	37	12	80633220	80633220	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	80633220	80633220	G	T	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	splice_site	c.1025+1	e10+1	1.000	-	-	-	no_errors	OTOGL	HGNC	ENSG00000165899				75	0	0	45	26	36.6197
OTOGL	0	genome.wustl.edu	37	12	80747147	80747147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	80747147	80747147	G	A	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.5423	p.R1808Q	0.615	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				15	0	0	13	7	35
SLC2A3	0	genome.wustl.edu	37	12	8075568	8075568	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8075568	8075568	A	G	SNP	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	missense	c.1121	p.V374A	1.000	pfam_Sub_transporter,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				81	0	0	33	16	32.6531
LIN7A	0	genome.wustl.edu	37	12	81239585	81239585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	81239585	81239585	C	T	SNP	LIN7A	ENST00000552864	human	ensembl	74_37	-1	known	missense	c.407	p.R136H	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_Lin-7_homologue,pfscan_PDZ	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7A	HGNC	ENSG00000111052				89	0	0	57	30	34.4828
FOXJ2	0	genome.wustl.edu	37	12	8200530	8200530	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8200530	8200530	T	C	SNP	FOXJ2	ENST00000162391	human	ensembl	74_37	+1	known	silent	c.870	p.Y290	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970				92	0	0	30	20	40
C3AR1	0	genome.wustl.edu	37	12	8211843	8211843	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8211843	8211843	A	G	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	silent	c.939	p.G313	0.004	pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860				158	0	0	85	31	26.7241
NECAP1	0	genome.wustl.edu	37	12	8248234	8248234	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8248234	8248234	G	A	SNP	NECAP1	ENST00000339754	human	ensembl	74_37	+1	known	silent	c.714	p.T238	0.000	NULL	pfam_NECAP-1	-	no_errors	NECAP1	HGNC	ENSG00000089818				162	0	0	82	41	33.3333
METTL25	0	genome.wustl.edu	37	12	82792980	82792980	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	82792980	82792980	C	A	SNP	METTL25	ENST00000248306	human	ensembl	74_37	+1	known	missense	c.938	p.S313Y	0.999	NULL	NULL	-	no_errors	METTL25	HGNC	ENSG00000127720				54	0	0	53	26	32.9114
FAM90A1	0	genome.wustl.edu	37	12	8374624	8374624	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8374624	8374624	G	A	SNP	FAM90A1	ENST00000307435	human	ensembl	74_37	-1	known	missense	c.1189	p.R397W	0.004	NULL	NULL	-	no_errors	FAM90A1	HGNC	ENSG00000171847				82	0	0	40	13	24.5283
FAM86FP	0	genome.wustl.edu	37	12	8386974	8386974	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8386974	8386974	G	A	SNP	FAM86FP	ENST00000427893	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.328	-	-	-	no_errors	FAM86FP	HGNC	ENSG00000164845				97	0	0	46	20	30.303
ENSG00000221104	0	genome.wustl.edu	37	12	8519361	8519361	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8519361	8519361	G	A	SNP	ENSG00000221104	ENST00000408177	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.309	-	-	-	no_errors	AC092865.1	Clone_based_ensembl_gene	ENSG00000221104				144	0	0	64	41	39.0476
SLC6A15	0	genome.wustl.edu	37	12	85264417	85264417	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	85264417	85264417	G	A	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	silent	c.1335	p.A445	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041				114	0	0	74	39	34.5133
TSPAN19	0	genome.wustl.edu	37	12	85411330	85411330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	85411330	85411330	T	C	SNP	TSPAN19	ENST00000532498	human	ensembl	74_37	-1	known	missense	c.499	p.N167D	0.962	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN19	HGNC	ENSG00000231738				10	0	0	10	8	44.4444
LRRIQ1	0	genome.wustl.edu	37	12	85492191	85492191	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	85492191	85492191	T	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	missense	c.2946	p.I982M	0.992	smart_Leu-rich_rpt_typical-subtyp	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				61	0	0	50	27	35.0649
NTS	0	genome.wustl.edu	37	12	86276065	86276065	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	86276065	86276065	G	T	SNP	NTS	ENST00000256010	human	ensembl	74_37	+1	known	missense	c.425	p.R142I	1.000	pfam_NeurotensiN,prints_NeurotensiN	pfam_NeurotensiN,prints_NeurotensiN	-	no_errors	NTS	HGNC	ENSG00000133636				121	0	0	122	60	32.967
CLEC6A	0	genome.wustl.edu	37	12	8628798	8628798	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	8628798	8628798	G	A	SNP	CLEC6A	ENST00000382073	human	ensembl	74_37	+1	known	nonsense	c.447	p.W149*	0.998	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC6A	HGNC	ENSG00000205846				109	0	0	79	33	29.4643
WNK1	0	genome.wustl.edu	37	12	862916	862916	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	862916	862916	A	G	SNP	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	missense	c.185	p.D62G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237				102	0	0	38	15	28.3019
MGAT4C	0	genome.wustl.edu	37	12	86373668	86373668	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	86373668	86373668	A	C	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	missense	c.923	p.F308C	1.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				94	0	0	60	32	34.7826
MGAT4C	0	genome.wustl.edu	37	12	86383216	86383216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	86383216	86383216	G	T	SNP	MGAT4C	ENST00000393205	human	ensembl	74_37	-1	known	missense	c.196	p.L66I	1.000	superfamily_LSM_dom	pfam_Glyco_transf_54,superfamily_LSM_dom	-	no_errors	MGAT4C	HGNC	ENSG00000182050				35	0	0	21	11	34.375
MGAT4C	0	genome.wustl.edu	37	12	86383328	86383328	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	86383328	86383328	C	A	SNP	MGAT4C	ENST00000552435	human	ensembl	74_37	-1	putative	splice_site	c.1-1	e1-1	0.795	-	-	-	no_errors	MGAT4C	HGNC	ENSG00000182050				40	0	0	21	11	34.375
C12orf50	0	genome.wustl.edu	37	12	88420349	88420349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	88420349	88420349	G	A	SNP	C12orf50	ENST00000298699	human	ensembl	74_37	-1	known	missense	c.49	p.P17S	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805				72	0	0	49	18	26.8657
CEP290	0	genome.wustl.edu	37	12	88482952	88482952	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	88482952	88482952	C	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.3892	p.D1298Y	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707				32	0	0	21	12	36.3636
DUSP6	0	genome.wustl.edu	37	12	89745792	89745792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	89745792	89745792	G	A	SNP	DUSP6	ENST00000279488	human	ensembl	74_37	-1	known	missense	c.25	p.P9S	1.000	superfamily_Rhodanese-like_dom,pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP	-	no_errors	DUSP6	HGNC	ENSG00000139318				143	0	0	64	28	30.4348
POC1B	0	genome.wustl.edu	37	12	89864189	89864189	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	89864189	89864189	C	T	SNP	POC1B	ENST00000313546	human	ensembl	74_37	-1	known	silent	c.759	p.K253	1.000	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	POC1B	HGNC	ENSG00000139323				70	0	0	55	33	37.5
ATP2B1	0	genome.wustl.edu	37	12	90004246	90004246	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	90004246	90004246	G	A	SNP	ATP2B1	ENST00000261173	human	ensembl	74_37	-1	known	nonsense	c.2287	p.R763*	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B1	HGNC	ENSG00000070961				176	0	0	125	65	34.2105
A2ML1	0	genome.wustl.edu	37	12	9008114	9008114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	9008114	9008114	C	T	SNP	A2ML1	ENST00000299698	human	ensembl	74_37	+1	known	missense	c.2774	p.A925V	0.185	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	A2ML1	HGNC	ENSG00000166535				140	0	0	66	28	29.7872
LUM	0	genome.wustl.edu	37	12	91502039	91502039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	91502039	91502039	C	T	SNP	LUM	ENST00000266718	human	ensembl	74_37	-1	known	missense	c.718	p.E240K	1.000	pfam_Leu-rich_rpt	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329				211	0	0	110	74	40.2174
A2M	0	genome.wustl.edu	37	12	9261990	9261990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	9261990	9261990	A	G	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.685	p.F229L	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				24	0	0	23	8	25.8065
A2M	0	genome.wustl.edu	37	12	9265016	9265016	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	9265016	9265016	G	A	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	silent	c.387	p.V129	0.931	pfam_A2M_N,superfamily_Cupredoxin	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				68	0	0	25	14	35.8974
PZP	0	genome.wustl.edu	37	12	9303273	9303273	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	9303273	9303273	C	A	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.4351	p.A1451S	1.000	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				89	0	0	53	31	36.9048
PLEKHG7	0	genome.wustl.edu	37	12	93162759	93162759	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	93162759	93162759	T	G	SNP	PLEKHG7	ENST00000344636	human	ensembl	74_37	+1	known	missense	c.935	p.V312G	0.158	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG7	HGNC	ENSG00000187510				29	0	0	18	8	30.7692
EEA1	0	genome.wustl.edu	37	12	93170682	93170682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	93170682	93170682	C	T	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.4051	p.E1351K	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				141	0	0	108	48	30.7692
EEA1	0	genome.wustl.edu	37	12	93181715	93181715	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	93181715	93181715	T	G	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.3078	p.E1026D	0.705	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				44	0	0	32	16	33.3333
PZP	0	genome.wustl.edu	37	12	9318693	9318693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	9318693	9318693	C	T	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.2213	p.R738Q	0.058	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				179	0	0	129	52	28.7293
CRADD	0	genome.wustl.edu	37	12	94243757	94243757	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	94243757	94243757	A	G	SNP	CRADD	ENST00000332896	human	ensembl	74_37	+1	known	missense	c.310	p.T104A	0.000	superfamily_DEATH-like_dom	pfam_CARD,pfam_Death_domain,superfamily_DEATH-like_dom,smart_CARD,smart_Death_domain,pfscan_CARD,pfscan_Death_domain	-	no_errors	CRADD	HGNC	ENSG00000169372				100	0	0	92	6	6.12245
PLXNC1	0	genome.wustl.edu	37	12	94641876	94641876	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	94641876	94641876	A	C	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	missense	c.2586	p.K862N	1.000	superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				79	0	0	52	20	27.7778
PLXNC1	0	genome.wustl.edu	37	12	94673390	94673390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	94673390	94673390	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	missense	c.3740	p.S1247F	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				99	0	0	45	19	29.6875
FGD6	0	genome.wustl.edu	37	12	95478317	95478317	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95478317	95478317	A	G	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	silent	c.4213	p.L1405	0.839	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				86	0	0	59	29	32.9545
FGD6	0	genome.wustl.edu	37	12	95479665	95479665	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95479665	95479665	T	C	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.3998	p.D1333G	1.000	pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				155	0	0	95	46	32.6241
FGD6	0	genome.wustl.edu	37	12	95603582	95603582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95603582	95603582	C	T	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.1478	p.R493Q	0.139	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				185	0	0	94	48	33.8028
FGD6	0	genome.wustl.edu	37	12	95603952	95603952	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95603952	95603952	A	G	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.1108	p.C370R	0.892	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				115	0	0	102	7	6.42202
FGD6	0	genome.wustl.edu	37	12	95604098	95604098	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95604098	95604098	C	T	SNP	FGD6	ENST00000343958	human	ensembl	74_37	-1	known	missense	c.962	p.R321Q	0.254	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD6	HGNC	ENSG00000180263				203	0	0	110	45	29.0323
METAP2	0	genome.wustl.edu	37	12	95906667	95906667	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	95906667	95906667	T	G	SNP	METAP2	ENST00000323666	human	ensembl	74_37	+1	known	missense	c.1159	p.F387V	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP2	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP2	-	no_errors	METAP2	HGNC	ENSG00000111142				65	0	0	38	15	28.3019
CCDC38	0	genome.wustl.edu	37	12	96312688	96312688	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	96312688	96312688	A	C	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	missense	c.104	p.L35R	1.000	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				91	0	0	42	28	40
CCDC38	0	genome.wustl.edu	37	12	96312689	96312689	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	96312689	96312689	G	T	SNP	CCDC38	ENST00000344280	human	ensembl	74_37	-1	known	missense	c.103	p.L35I	1.000	NULL	NULL	-	no_errors	CCDC38	HGNC	ENSG00000165972				92	0	0	50	19	27.5362
CDK17	0	genome.wustl.edu	37	12	96692758	96692758	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	96692758	96692758	T	C	SNP	CDK17	ENST00000261211	human	ensembl	74_37	-1	known	missense	c.604	p.T202A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK17	HGNC	ENSG00000059758				66	0	0	41	16	28.0702
C12orf55	0	genome.wustl.edu	37	12	97051678	97051678	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	97051678	97051678	G	T	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	nonsense	c.5119	p.E1707*	1.000	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				195	0	0	173	48	21.7195
C12orf55	0	genome.wustl.edu	37	12	97093822	97093822	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	97093822	97093822	A	G	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.6425	p.N2142S	0.875	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				105	0	0	62	30	32.6087
C12orf55	0	genome.wustl.edu	37	12	97136242	97136242	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	97136242	97136242	A	C	SNP	C12orf55	ENST00000524981	human	ensembl	74_37	+1	putative	missense	c.7097	p.E2366A	0.340	NULL	superfamily_Fibronectin_type3	-	no_errors	C12orf55	HGNC	ENSG00000188596				36	0	0	25	12	32.4324
NEDD1	0	genome.wustl.edu	37	12	97345812	97345812	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	97345812	97345812	G	T	SNP	NEDD1	ENST00000557644	human	ensembl	74_37	+1	known	missense	c.1985	p.R662I	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NEDD1	HGNC	ENSG00000139350				50	0	0	43	20	31.746
SLC25A3	0	genome.wustl.edu	37	12	98992403	98992403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	98992403	98992403	G	A	SNP	SLC25A3	ENST00000228318	human	ensembl	74_37	+1	known	missense	c.566	p.R189Q	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A3	HGNC	ENSG00000075415				89	0	0	41	31	43.0556
APAF1	0	genome.wustl.edu	37	12	99080609	99080609	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	99080609	99080609	T	G	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	missense	c.2262	p.D754E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				91	0	0	64	6	8.57143
APAF1	0	genome.wustl.edu	37	12	99093197	99093197	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	99093197	99093197	G	A	SNP	APAF1	ENST00000551964	human	ensembl	74_37	+1	known	silent	c.2316	p.A772	0.801	superfamily_WD40_repeat_dom,pirsf_Apoptotic_pept-activating_1,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_NB-ARC,pfam_CARD,superfamily_WD40_repeat_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pirsf_Apoptotic_pept-activating_1,pfscan_CARD,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Disease_R,prints_G-protein_beta_WD-40_rep	-	no_errors	APAF1	HGNC	ENSG00000120868				47	0	0	40	16	28.5714
TM9SF2	0	genome.wustl.edu	37	13	100191723	100191723	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	100191723	100191723	A	C	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	missense	c.740	p.K247T	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				158	0	0	132	48	26.6667
TM9SF2	0	genome.wustl.edu	37	13	100201466	100201466	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	100201466	100201466	C	A	SNP	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	missense	c.1318	p.L440I	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304				69	0	0	60	32	34.7826
NALCN	0	genome.wustl.edu	37	13	101712261	101712261	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	101712261	101712261	A	C	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.4814	p.L1605R	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				89	0	0	37	30	44.7761
NALCN	0	genome.wustl.edu	37	13	101735209	101735209	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	101735209	101735209	A	G	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	missense	c.3716	p.V1239A	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				122	0	0	77	38	33.0435
NALCN	0	genome.wustl.edu	37	13	101742314	101742314	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	101742314	101742314	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.3273	p.A1091	0.001	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				351	0	0	220	93	29.7125
NALCN	0	genome.wustl.edu	37	13	101755555	101755555	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	101755555	101755555	C	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	nonsense	c.3025	p.E1009*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				152	0	0	113	49	30.2469
NALCN	0	genome.wustl.edu	37	13	101797193	101797193	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	101797193	101797193	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	nonsense	c.1894	p.R632*	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				214	0	0	148	64	30.1887
ITGBL1	0	genome.wustl.edu	37	13	102105271	102105271	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	102105271	102105271	G	A	SNP	ITGBL1	ENST00000376180	human	ensembl	74_37	+1	known	silent	c.87	p.S29	0.286	NULL	pfam_EGF_extracell,smart_EG-like_dom	-	no_errors	ITGBL1	HGNC	ENSG00000198542				123	0	0	93	7	7
ITGBL1	0	genome.wustl.edu	37	13	102359183	102359183	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	102359183	102359183	T	G	SNP	ITGBL1	ENST00000376180	human	ensembl	74_37	+1	known	missense	c.1210	p.C404G	1.000	NULL	pfam_EGF_extracell,smart_EG-like_dom	-	no_errors	ITGBL1	HGNC	ENSG00000198542				133	1	0.746269	73	43	37.069
TPP2	0	genome.wustl.edu	37	13	103295587	103295587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103295587	103295587	C	T	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	missense	c.2036	p.S679L	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				44	0	0	31	15	32.6087
BIVM	0	genome.wustl.edu	37	13	103459815	103459815	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103459815	103459815	T	G	SNP	BIVM	ENST00000257336	human	ensembl	74_37	+1	known	missense	c.198	p.I66M	1.000	NULL	NULL	-	no_errors	BIVM	HGNC	ENSG00000134897				109	0	0	75	40	34.7826
ERCC5	0	genome.wustl.edu	37	13	103506186	103506186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103506186	103506186	A	G	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.344	p.K115R	1.000	prints_XPG/Rad2_eukaryotes,tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				56	0	0	32	18	36
ERCC5	0	genome.wustl.edu	37	13	103508441	103508441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103508441	103508441	G	A	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.507	p.M169I	1.000	tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				75	0	0	58	31	34.8315
ERCC5	0	genome.wustl.edu	37	13	103513933	103513933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103513933	103513933	T	C	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.749	p.V250A	1.000	tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				152	0	0	87	28	24.3478
ERCC5	0	genome.wustl.edu	37	13	103524621	103524621	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	103524621	103524621	T	A	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.2752	p.L918I	0.014	superfamily_5-3_exonuclease_C,tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899				72	0	0	44	22	33.3333
DAOA	0	genome.wustl.edu	37	13	106124904	106124904	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	106124904	106124904	G	T	SNP	DAOA	ENST00000375936	human	ensembl	74_37	+1	known	nonsense	c.151	p.G51*	0.000	NULL	NULL	-	no_errors	DAOA	HGNC	ENSG00000182346				67	0	0	46	16	25.8065
ARGLU1	0	genome.wustl.edu	37	13	107196385	107196385	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	107196385	107196385	A	G	SNP	ARGLU1	ENST00000400198	human	ensembl	74_37	-1	known	missense	c.781	p.S261P	1.000	NULL	NULL	-	no_errors	ARGLU1	HGNC	ENSG00000134884				38	0	0	31	9	22.5
FAM155A	0	genome.wustl.edu	37	13	107863091	107863091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	107863091	107863091	C	T	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.928	p.A310T	1.000	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				91	0	0	47	26	35.6164
TNFSF13B	0	genome.wustl.edu	37	13	108955863	108955863	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	108955863	108955863	T	C	SNP	TNFSF13B	ENST00000375887	human	ensembl	74_37	+1	known	missense	c.656	p.V219A	1.000	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,pfscan_TNF_dom	-	no_errors	TNFSF13B	HGNC	ENSG00000102524				97	0	0	91	42	31.5789
MYO16	0	genome.wustl.edu	37	13	109753197	109753197	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	109753197	109753197	C	T	SNP	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	nonsense	c.3334	p.R1112*	0.973	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				68	0	0	48	17	26.1538
COL4A1	0	genome.wustl.edu	37	13	110831355	110831355	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	110831355	110831355	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.2373	p.G791	0.004	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				33	0	0	16	6	27.2727
COL4A1	0	genome.wustl.edu	37	13	110833708	110833708	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	110833708	110833708	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.2124	p.G708	0.056	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				43	0	0	24	11	31.4286
CARS2	0	genome.wustl.edu	37	13	111335429	111335429	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111335429	111335429	G	A	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	silent	c.624	p.V208	0.000	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				144	0	0	67	31	31.6327
CARS2	0	genome.wustl.edu	37	13	111340140	111340140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111340140	111340140	C	T	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.499	p.E167K	0.998	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				257	0	0	141	78	35.6164
ING1	0	genome.wustl.edu	37	13	111372025	111372025	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111372025	111372025	C	T	SNP	ING1	ENST00000375774	human	ensembl	74_37	+1	known	nonsense	c.1015	p.R339*	0.949	superfamily_Znf_FYVE_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING1	HGNC	ENSG00000153487				65	0	0	45	21	31.8182
ANKRD10	0	genome.wustl.edu	37	13	111532320	111532320	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111532320	111532320	A	G	SNP	ANKRD10	ENST00000267339	human	ensembl	74_37	-1	known	silent	c.927	p.I309	0.243	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448				104	0	0	53	49	48.0392
ANKRD10	0	genome.wustl.edu	37	13	111532435	111532435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111532435	111532435	G	A	SNP	ANKRD10	ENST00000267339	human	ensembl	74_37	-1	known	missense	c.812	p.S271L	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD10	HGNC	ENSG00000088448				64	0	0	35	16	31.3725
ARHGEF7	0	genome.wustl.edu	37	13	111935539	111935539	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	111935539	111935539	G	A	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	silent	c.1842	p.A614	0.984	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				12	0	0	4	6	60
TUBGCP3	0	genome.wustl.edu	37	13	113170831	113170831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	113170831	113170831	G	A	SNP	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	missense	c.2009	p.A670V	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216				81	0	0	43	18	29.5082
ATP11A	0	genome.wustl.edu	37	13	113527971	113527971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	113527971	113527971	C	A	SNP	ATP11A	ENST00000375630	human	ensembl	74_37	+1	known	missense	c.3142	p.L1048I	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11A	HGNC	ENSG00000068650				88	0	0	30	16	34.7826
F7	0	genome.wustl.edu	37	13	113772894	113772894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	113772894	113772894	G	A	SNP	F7	ENST00000375581	human	ensembl	74_37	+1	known	missense	c.973	p.E325K	0.019	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_Peptidase_S1A_nudel,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F7	HGNC	ENSG00000057593				107	0	0	41	29	41.4286
PCID2	0	genome.wustl.edu	37	13	113854922	113854922	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	113854922	113854922	A	C	SNP	PCID2	ENST00000462853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCID2	HGNC	ENSG00000126226				16	0	0	3	8	72.7273
TMEM255B	0	genome.wustl.edu	37	13	114469097	114469097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	114469097	114469097	C	T	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	missense	c.56	p.S19L	0.137	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				141	0	0	74	44	37.2881
TMEM255B	0	genome.wustl.edu	37	13	114502452	114502452	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	114502452	114502452	C	T	SNP	TMEM255B	ENST00000488362	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM255B	HGNC	ENSG00000184497				29	0	0	20	9	31.0345
CDC16	0	genome.wustl.edu	37	13	115030682	115030682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	115030682	115030682	G	A	SNP	CDC16	ENST00000356221	human	ensembl	74_37	+1	known	missense	c.1570	p.E524K	1.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC16	HGNC	ENSG00000130177				165	0	0	98	52	34.6667
UPF3A	0	genome.wustl.edu	37	13	115070354	115070354	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	115070354	115070354	T	G	SNP	UPF3A	ENST00000375299	human	ensembl	74_37	+1	known	missense	c.1393	p.S465A	0.008	NULL	pfam_Nonsense_mediated_decay_UPF3	-	no_errors	UPF3A	HGNC	ENSG00000169062				84	0	0	36	22	37.931
TPTE2	0	genome.wustl.edu	37	13	20000636	20000636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20000636	20000636	C	T	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.1324	p.D442N	0.366	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				66	0	0	80	25	23.8095
MPHOSPH8	0	genome.wustl.edu	37	13	20240591	20240591	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20240591	20240591	C	T	SNP	MPHOSPH8	ENST00000414242	human	ensembl	74_37	+1	known	silent	c.2046	p.I682	0.021	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				235	0	0	115	68	37.1585
PSPC1	0	genome.wustl.edu	37	13	20277378	20277378	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20277378	20277378	A	G	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	silent	c.1509	p.G503	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				84	0	0	58	18	23.6842
PSPC1	0	genome.wustl.edu	37	13	20279843	20279843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20279843	20279843	C	T	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.1345	p.A449T	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				65	0	0	50	10	16.6667
PSPC1	0	genome.wustl.edu	37	13	20304443	20304443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20304443	20304443	C	T	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.1094	p.R365Q	0.997	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				357	0	0	245	21	7.89474
PSPC1	0	genome.wustl.edu	37	13	20356882	20356882	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20356882	20356882	T	G	SNP	PSPC1	ENST00000338910	human	ensembl	74_37	-1	known	missense	c.16	p.N6H	1.000	NULL	pfam_RRM_dom,pfam_NOPS,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PSPC1	HGNC	ENSG00000121390				133	0	0	67	24	26.3736
ZMYM2	0	genome.wustl.edu	37	13	20567921	20567921	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20567921	20567921	T	G	SNP	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	missense	c.709	p.F237V	1.000	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				197	0	0	130	74	36.2745
ZMYM2	0	genome.wustl.edu	37	13	20633001	20633001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20633001	20633001	G	T	SNP	ZMYM2	ENST00000382883	human	ensembl	74_37	+1	known	missense	c.1082	p.R361I	0.000	NULL	pfam_Znf_MYM,pfam_TRASH_TR_C_arc,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				43	0	0	26	20	43.4783
GJA3	0	genome.wustl.edu	37	13	20716951	20716951	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20716951	20716951	G	A	SNP	GJA3	ENST00000241125	human	ensembl	74_37	-1	known	silent	c.477	p.F159	0.755	pfam_Connexin_CCC,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin46	-	no_errors	GJA3	HGNC	ENSG00000121743				60	0	0	37	16	30.1887
GJB6	0	genome.wustl.edu	37	13	20797280	20797280	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20797280	20797280	C	A	SNP	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	missense	c.340	p.D114Y	0.328	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				95	0	0	47	26	35.6164
GJB6	0	genome.wustl.edu	37	13	20797414	20797414	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	20797414	20797414	A	G	SNP	GJB6	ENST00000241124	human	ensembl	74_37	-1	known	missense	c.206	p.F69S	1.000	pfam_Connexin_N,smart_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB6	HGNC	ENSG00000121742				92	0	0	53	27	33.75
LATS2	0	genome.wustl.edu	37	13	21557416	21557416	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	21557416	21557416	A	G	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.2429	p.F810S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				134	0	0	67	33	33
MICU2	0	genome.wustl.edu	37	13	22070163	22070163	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	22070163	22070163	A	C	SNP	MICU2	ENST00000479790	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.118	-	-	-	no_errors	MICU2	HGNC	ENSG00000165487				41	0	0	23	13	36.1111
SACS	0	genome.wustl.edu	37	13	23906234	23906234	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23906234	23906234	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.11781	p.A3927	0.007	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				196	0	0	119	62	34.2541
SACS	0	genome.wustl.edu	37	13	23906297	23906297	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23906297	23906297	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.11718	p.A3906	0.080	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				259	0	0	126	75	37.3134
SACS	0	genome.wustl.edu	37	13	23906840	23906840	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23906840	23906840	A	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	silent	c.11175	p.G3725	0.202	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				154	0	0	106	53	33.3333
SACS	0	genome.wustl.edu	37	13	23907108	23907108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23907108	23907108	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.10907	p.R3636Q	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				69	0	0	41	20	32.7869
SACS	0	genome.wustl.edu	37	13	23907994	23907994	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23907994	23907994	C	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.10021	p.D3341Y	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				117	0	0	75	38	33.6283
SACS	0	genome.wustl.edu	37	13	23908017	23908017	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23908017	23908017	G	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.9998	p.A3333D	0.999	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				132	0	0	79	34	30.0885
SACS	0	genome.wustl.edu	37	13	23909908	23909908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23909908	23909908	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.8107	p.R2703C	1.000	superfamily_HATPase_ATP-bd	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				84	0	0	59	30	33.7079
SACS	0	genome.wustl.edu	37	13	23911396	23911396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23911396	23911396	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.6619	p.A2207T	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				72	0	0	40	22	35.4839
SACS	0	genome.wustl.edu	37	13	23911438	23911438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23911438	23911438	C	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.6577	p.D2193N	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				67	0	0	40	16	28.5714
SACS	0	genome.wustl.edu	37	13	23913082	23913082	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23913082	23913082	G	A	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	nonsense	c.4933	p.R1645*	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				144	0	0	71	42	37.1681
SACS	0	genome.wustl.edu	37	13	23915457	23915457	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23915457	23915457	T	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.2558	p.K853T	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				95	0	0	74	30	28.8462
SACS	0	genome.wustl.edu	37	13	23915664	23915664	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	23915664	23915664	T	G	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.2351	p.K784T	1.000	NULL	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				85	0	0	44	37	45.679
MIPEP	0	genome.wustl.edu	37	13	24330852	24330852	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	24330852	24330852	T	G	SNP	MIPEP	ENST00000464194	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIPEP	HGNC	ENSG00000027001				32	0	0	13	14	51.8519
MIPEP	0	genome.wustl.edu	37	13	24415537	24415537	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	24415537	24415537	C	A	SNP	MIPEP	ENST00000382172	human	ensembl	74_37	-1	known	silent	c.1197	p.G399	0.931	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001				102	0	0	54	30	35.7143
C1QTNF9B	0	genome.wustl.edu	37	13	24465742	24465742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	24465742	24465742	C	T	SNP	C1QTNF9B	ENST00000382137	human	ensembl	74_37	-1	known	missense	c.688	p.E230K	0.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9B	HGNC	ENSG00000205863				200	0	0	107	54	33.5404
ANKRD20A19P	0	genome.wustl.edu	37	13	24515769	24515769	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	24515769	24515769	A	G	SNP	ANKRD20A19P	ENST00000420143	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	ANKRD20A19P	HGNC	ENSG00000196593				90	0	0	47	22	31.8841
PARP4	0	genome.wustl.edu	37	13	25008639	25008639	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25008639	25008639	T	C	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.4640	p.D1547G	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				120	0	0	68	25	26.8817
PARP4	0	genome.wustl.edu	37	13	25008671	25008671	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25008671	25008671	G	A	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	silent	c.4608	p.C1536	0.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				111	0	0	69	27	28.125
PARP4	0	genome.wustl.edu	37	13	25067745	25067745	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25067745	25067745	T	G	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	missense	c.868	p.S290R	0.837	superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				85	0	0	41	23	35.9375
TPTE2P6	0	genome.wustl.edu	37	13	25171719	25171719	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25171719	25171719	A	G	SNP	TPTE2P6	ENST00000440905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TPTE2P6	HGNC	ENSG00000205822				28	0	0	17	14	45.1613
ATP12A	0	genome.wustl.edu	37	13	25284622	25284622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25284622	25284622	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.2806	p.E936K	1.000	pfam_ATPase_P-typ_cation-transptr_C,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				103	0	0	67	25	27.1739
RNF17	0	genome.wustl.edu	37	13	25353856	25353856	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25353856	25353856	A	C	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.481	p.S161R	0.978	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				93	0	0	65	29	30.8511
RNF17	0	genome.wustl.edu	37	13	25353861	25353861	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25353861	25353861	C	T	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	silent	c.486	p.F162	0.997	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				89	0	0	55	32	36.7816
RNF17	0	genome.wustl.edu	37	13	25406069	25406069	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25406069	25406069	A	C	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.2435	p.K812T	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				42	0	0	37	23	38.3333
RNF17	0	genome.wustl.edu	37	13	25444782	25444782	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25444782	25444782	T	C	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.4352	p.V1451A	0.865	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				84	0	0	59	28	32.1839
MTMR6	0	genome.wustl.edu	37	13	25826043	25826043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	25826043	25826043	C	T	SNP	MTMR6	ENST00000381801	human	ensembl	74_37	-1	known	missense	c.1426	p.E476K	0.000	NULL	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat	-	no_errors	MTMR6	HGNC	ENSG00000139505				213	0	0	138	74	34.9057
ATP8A2	0	genome.wustl.edu	37	13	26343251	26343251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	26343251	26343251	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.2452	p.A818T	0.999	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				140	0	0	60	22	26.8293
RNF6	0	genome.wustl.edu	37	13	26789090	26789090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	26789090	26789090	C	T	SNP	RNF6	ENST00000346166	human	ensembl	74_37	-1	known	missense	c.929	p.R310Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870				252	0	0	156	69	30.6667
RPL21	0	genome.wustl.edu	37	13	27830372	27830372	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	27830372	27830372	C	T	SNP	RPL21	ENST00000272274	human	ensembl	74_37	+1	known	silent	c.294	p.H98	1.000	pfam_Ribosomal_L21e,superfamily_Translation_prot_SH3-like	pfam_Ribosomal_L21e,superfamily_Translation_prot_SH3-like	-	no_errors	RPL21	HGNC	ENSG00000122026				12	0	0	10	6	37.5
LNX2	0	genome.wustl.edu	37	13	28155573	28155573	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	28155573	28155573	T	A	SNP	LNX2	ENST00000316334	human	ensembl	74_37	-1	known	nonsense	c.268	p.R90*	0.991	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX2	HGNC	ENSG00000139517				48	0	0	32	30	48.3871
FLT1	0	genome.wustl.edu	37	13	29001999	29001999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	29001999	29001999	G	A	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.1166	p.S389L	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				137	0	0	75	52	40.9449
FLT1	0	genome.wustl.edu	37	13	29041260	29041260	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	29041260	29041260	T	G	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	missense	c.168	p.E56D	0.443	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755				126	0	0	78	32	29.0909
MTUS2	0	genome.wustl.edu	37	13	29608080	29608080	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	29608080	29608080	T	C	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.2294	p.V765A	1.000	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				55	0	0	35	16	31.3725
MTUS2	0	genome.wustl.edu	37	13	30077268	30077268	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	30077268	30077268	G	A	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	silent	c.4065	p.S1355	0.995	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				93	0	0	46	24	34.2857
UBL3	0	genome.wustl.edu	37	13	30346289	30346289	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	30346289	30346289	A	C	SNP	UBL3	ENST00000380680	human	ensembl	74_37	-1	known	missense	c.183	p.I61M	1.000	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	pirsf_M-anchored_Ub-fold_HCG-1,pfscan_Ubiquitin_supergroup	-	no_errors	UBL3	HGNC	ENSG00000122042				105	0	0	76	29	27.619
KATNAL1	0	genome.wustl.edu	37	13	30857759	30857759	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	30857759	30857759	C	T	SNP	KATNAL1	ENST00000380615	human	ensembl	74_37	-1	known	nonsense	c.156	p.W52*	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781				171	0	0	98	47	32.4138
MEDAG	0	genome.wustl.edu	37	13	31495898	31495898	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	31495898	31495898	G	A	SNP	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	silent	c.702	p.T234	0.400	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				72	0	0	45	23	33.8235
FRY	0	genome.wustl.edu	37	13	32721440	32721440	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32721440	32721440	C	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	nonsense	c.1201	p.R401*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				45	0	0	28	23	45.098
FRY	0	genome.wustl.edu	37	13	32768298	32768298	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32768298	32768298	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.3610	p.E1204K	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				145	0	0	72	40	35.7143
FRY	0	genome.wustl.edu	37	13	32776594	32776594	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32776594	32776594	C	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.3948	p.S1316	0.845	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				140	0	0	61	26	29.8851
FRY	0	genome.wustl.edu	37	13	32802781	32802781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32802781	32802781	C	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.5395	p.L1799F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				103	0	0	61	24	28.2353
FRY	0	genome.wustl.edu	37	13	32805401	32805401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32805401	32805401	C	T	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	missense	c.5491	p.R1831C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				119	0	0	67	50	42.735
FRY	0	genome.wustl.edu	37	13	32821606	32821606	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32821606	32821606	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.6975	p.G2325	0.195	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910				122	0	0	68	27	28.4211
BRCA2	0	genome.wustl.edu	37	13	32907018	32907018	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32907018	32907018	G	T	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.1403	p.R468I	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				96	0	0	74	40	35.0877
BRCA2	0	genome.wustl.edu	37	13	32914522	32914522	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32914522	32914522	C	A	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	silent	c.6030	p.V2010	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				112	0	0	72	34	32.0755
BRCA2	0	genome.wustl.edu	37	13	32929345	32929345	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	32929345	32929345	A	C	SNP	BRCA2	ENST00000380152	human	ensembl	74_37	+1	known	missense	c.7355	p.N2452T	0.000	pirsf_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold,pirsf_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618				43	0	0	34	22	39.2857
N4BP2L2	0	genome.wustl.edu	37	13	33017991	33017991	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	33017991	33017991	T	G	SNP	N4BP2L2	ENST00000399396	human	ensembl	74_37	-1	known	missense	c.683	p.K228T	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				14	0	0	12	9	42.8571
PDS5B	0	genome.wustl.edu	37	13	33275569	33275569	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	33275569	33275569	C	A	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	missense	c.1850	p.S617Y	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642				53	0	0	35	23	39.6552
KL	0	genome.wustl.edu	37	13	33590981	33590981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	33590981	33590981	G	A	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	missense	c.403	p.D135N	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				49	0	0	23	9	28.125
KL	0	genome.wustl.edu	37	13	33628183	33628183	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	33628183	33628183	T	G	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	missense	c.1099	p.F367V	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				349	0	0	222	113	33.7313
STARD13	0	genome.wustl.edu	37	13	33701653	33701653	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	33701653	33701653	C	T	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	silent	c.1779	p.S593	0.014	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				14	0	0	3	4	57.1429
NBEA	0	genome.wustl.edu	37	13	35692599	35692599	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	35692599	35692599	G	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.2231	p.R744I	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				26	0	0	10	7	41.1765
MAB21L1	0	genome.wustl.edu	37	13	36049800	36049800	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	36049800	36049800	T	G	SNP	MAB21L1	ENST00000379919	human	ensembl	74_37	-1	known	missense	c.476	p.K159T	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MAB21L1	HGNC	ENSG00000180660				97	0	0	46	23	33.3333
NBEA	0	genome.wustl.edu	37	13	36180562	36180562	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	36180562	36180562	G	A	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	splice_site	c.7297-1	e48-1	1.000	-	-	-	no_errors	NBEA	HGNC	ENSG00000172915				12	0	0	6	3	33.3333
NBEA	0	genome.wustl.edu	37	13	36202263	36202263	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	36202263	36202263	G	A	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.7495	p.D2499N	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				21	0	0	18	9	33.3333
SERTM1	0	genome.wustl.edu	37	13	37269387	37269387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	37269387	37269387	C	T	SNP	SERTM1	ENST00000315190	human	ensembl	74_37	+1	known	missense	c.172	p.L58F	1.000	NULL	NULL	-	no_errors	SERTM1	HGNC	ENSG00000180440				205	0	0	124	45	26.6272
ALG5	0	genome.wustl.edu	37	13	37539735	37539735	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	37539735	37539735	A	C	SNP	ALG5	ENST00000239891	human	ensembl	74_37	-1	known	missense	c.750	p.F250L	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697				182	0	0	83	43	34.127
TRPC4	0	genome.wustl.edu	37	13	38211598	38211598	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	38211598	38211598	C	A	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2391	p.K797N	1.000	prints_TRPC4_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				113	0	0	73	40	35.3982
TRPC4	0	genome.wustl.edu	37	13	38213186	38213186	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	38213186	38213186	C	A	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2217	p.E739D	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				259	0	0	144	66	31.4286
TRPC4	0	genome.wustl.edu	37	13	38213191	38213191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	38213191	38213191	C	T	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2212	p.E738K	1.000	tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				270	0	0	150	72	32.4324
FREM2	0	genome.wustl.edu	37	13	39262086	39262086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	39262086	39262086	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.605	p.A202V	0.326	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				32	0	0	11	7	38.8889
FREM2	0	genome.wustl.edu	37	13	39262102	39262102	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	39262102	39262102	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	silent	c.621	p.F207	0.996	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				45	0	0	15	7	31.8182
FREM2	0	genome.wustl.edu	37	13	39265671	39265671	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	39265671	39265671	A	G	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.4190	p.D1397G	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				212	0	0	119	72	37.6963
NHLRC3	0	genome.wustl.edu	37	13	39621836	39621836	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	39621836	39621836	A	G	SNP	NHLRC3	ENST00000379600	human	ensembl	74_37	+1	known	missense	c.817	p.I273V	0.950	NULL	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC3	HGNC	ENSG00000188811				72	0	0	49	24	32.8767
LHFP	0	genome.wustl.edu	37	13	40175113	40175113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	40175113	40175113	C	T	SNP	LHFP	ENST00000379589	human	ensembl	74_37	-1	known	missense	c.241	p.E81K	0.998	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFP	HGNC	ENSG00000183722				217	0	0	118	55	31.7919
COG6	0	genome.wustl.edu	37	13	40253807	40253807	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	40253807	40253807	A	C	SNP	COG6	ENST00000465775	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COG6	HGNC	ENSG00000133103				32	0	0	26	15	36.5854
FOXO1	0	genome.wustl.edu	37	13	41134849	41134849	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41134849	41134849	T	C	SNP	FOXO1	ENST00000379561	human	ensembl	74_37	-1	known	missense	c.779	p.N260S	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907				175	0	0	90	38	29.6875
FOXO1	0	genome.wustl.edu	37	13	41134955	41134955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41134955	41134955	G	A	SNP	FOXO1	ENST00000379561	human	ensembl	74_37	-1	known	missense	c.673	p.R225C	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO1	HGNC	ENSG00000150907				117	0	0	58	19	24.6753
KBTBD6	0	genome.wustl.edu	37	13	41705387	41705387	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41705387	41705387	G	A	SNP	KBTBD6	ENST00000379485	human	ensembl	74_37	-1	known	missense	c.1261	p.R421C	0.983	NULL	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KBTBD6	HGNC	ENSG00000165572				164	0	0	95	54	36.2416
MTRF1	0	genome.wustl.edu	37	13	41808045	41808045	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41808045	41808045	T	G	SNP	MTRF1	ENST00000430347	human	ensembl	74_37	-1	known	missense	c.1008	p.R336S	0.980	pfam_Pep_chain_release_fac_I_II	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662				128	0	0	104	32	23.5294
NAA16	0	genome.wustl.edu	37	13	41893022	41893022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41893022	41893022	C	T	SNP	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	missense	c.220	p.R74C	1.000	smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				45	0	0	45	17	27.4194
NAA16	0	genome.wustl.edu	37	13	41932600	41932600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	41932600	41932600	A	C	SNP	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	missense	c.1248	p.K416N	1.000	smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				38	0	0	33	12	26.6667
VWA8	0	genome.wustl.edu	37	13	42277525	42277525	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	42277525	42277525	A	G	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.3139	p.F1047L	1.000	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				68	0	0	38	21	35.5932
VWA8	0	genome.wustl.edu	37	13	42293761	42293761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	42293761	42293761	C	T	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.3082	p.G1028R	1.000	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				86	0	0	44	29	39.726
VWA8	0	genome.wustl.edu	37	13	42460062	42460062	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	42460062	42460062	T	G	SNP	VWA8	ENST00000379310	human	ensembl	74_37	-1	known	missense	c.969	p.Q323H	1.000	NULL	pfam_ATPase_dyneun-rel_AAA,pfam_VWF_A,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA8	HGNC	ENSG00000102763				37	0	0	18	11	37.931
ENOX1	0	genome.wustl.edu	37	13	43896586	43896586	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	43896586	43896586	C	A	SNP	ENOX1	ENST00000261488	human	ensembl	74_37	-1	known	nonsense	c.1195	p.E399*	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658				110	0	0	65	38	36.8932
CCDC122	0	genome.wustl.edu	37	13	44411430	44411430	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	44411430	44411430	C	A	SNP	CCDC122	ENST00000444614	human	ensembl	74_37	-1	putative	nonsense	c.808	p.G270*	0.300	NULL	NULL	-	no_errors	CCDC122	HGNC	ENSG00000151773				81	0	0	51	20	28.169
TSC22D1	0	genome.wustl.edu	37	13	45149181	45149181	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	45149181	45149181	G	A	SNP	TSC22D1	ENST00000458659	human	ensembl	74_37	-1	known	missense	c.1030	p.P344S	0.618	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804				118	0	0	62	23	27.0588
KCTD4	0	genome.wustl.edu	37	13	45768256	45768256	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	45768256	45768256	G	A	SNP	KCTD4	ENST00000379108	human	ensembl	74_37	-1	known	silent	c.447	p.H149	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD4	HGNC	ENSG00000180332				163	0	0	105	48	31.3725
TPT1	0	genome.wustl.edu	37	13	45914178	45914178	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	45914178	45914178	T	G	SNP	TPT1	ENST00000530705	human	ensembl	74_37	-1	known	missense	c.244	p.S82R	1.000	pfam_Translational_control_tumour_p,superfamily_Mss4-like	pfam_Translational_control_tumour_p,superfamily_Mss4-like,prints_Translational_control_tumour_p	-	no_errors	TPT1	HGNC	ENSG00000133112				113	0	0	54	28	34.1463
ZC3H13	0	genome.wustl.edu	37	13	46559794	46559794	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	46559794	46559794	C	T	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1358	p.R453Q	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				201	0	0	115	58	33.526
ZC3H13	0	genome.wustl.edu	37	13	46563119	46563119	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	46563119	46563119	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	missense	c.1058	p.R353I	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200				82	0	0	28	22	44
CPB2	0	genome.wustl.edu	37	13	46638872	46638872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	46638872	46638872	C	T	SNP	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	missense	c.707	p.R236Q	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				65	0	0	29	21	42
CPB2	0	genome.wustl.edu	37	13	46653021	46653021	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	46653021	46653021	C	A	SNP	CPB2	ENST00000181383	human	ensembl	74_37	-1	known	nonsense	c.400	p.E134*	0.967	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB2	HGNC	ENSG00000080618				57	0	0	38	18	32.1429
LCP1	0	genome.wustl.edu	37	13	46733037	46733037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	46733037	46733037	C	T	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	missense	c.152	p.R51Q	1.000	pfscan_EF_hand_dom	pfam_CH-domain,pfam_EF_hand_dom,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	LCP1	HGNC	ENSG00000136167				278	0	0	138	67	32.6829
LRCH1	0	genome.wustl.edu	37	13	47297460	47297460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	47297460	47297460	C	T	SNP	LRCH1	ENST00000389798	human	ensembl	74_37	+1	known	missense	c.1759	p.R587C	0.998	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141				46	0	0	33	15	31.25
LRCH1	0	genome.wustl.edu	37	13	47315828	47315828	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	47315828	47315828	C	T	SNP	LRCH1	ENST00000389798	human	ensembl	74_37	+1	known	nonsense	c.2032	p.R678*	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH1	HGNC	ENSG00000136141				634	1	0.15748	385	185	32.4561
NUDT15	0	genome.wustl.edu	37	13	48615235	48615235	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	48615235	48615235	A	C	SNP	NUDT15	ENST00000258662	human	ensembl	74_37	+1	known	missense	c.338	p.E113A	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT15	HGNC	ENSG00000136159				23	0	0	18	10	35.7143
ITM2B	0	genome.wustl.edu	37	13	48830320	48830320	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	48830320	48830320	A	G	SNP	ITM2B	ENST00000378565	human	ensembl	74_37	+1	known	missense	c.254	p.D85G	0.998	NULL	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	ITM2B	HGNC	ENSG00000136156				72	0	0	43	15	25.8621
CYSLTR2	0	genome.wustl.edu	37	13	49281629	49281629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	49281629	49281629	C	T	SNP	CYSLTR2	ENST00000282018	human	ensembl	74_37	+1	known	missense	c.676	p.R226W	0.953	pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_CLT2_recept	pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_CLT2_recept,prints_Cyst_leuk_rcpt,prints_Protea_act_rcpt	-	no_errors	CYSLTR2	HGNC	ENSG00000152207				168	0	0	118	49	29.3413
CAB39L	0	genome.wustl.edu	37	13	49925041	49925041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	49925041	49925041	C	T	SNP	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	missense	c.403	p.A135T	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547				86	0	0	56	23	29.1139
RCBTB1	0	genome.wustl.edu	37	13	50123608	50123608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	50123608	50123608	C	T	SNP	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	missense	c.1031	p.R344H	1.000	superfamily_BTB/POZ_fold	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144				64	0	0	35	16	31.3725
TRIM13	0	genome.wustl.edu	37	13	50587166	50587166	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	50587166	50587166	T	G	SNP	TRIM13	ENST00000298772	human	ensembl	74_37	+1	known	missense	c.1099	p.F367V	0.911	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM13	HGNC	ENSG00000204977				202	0	0	119	65	35.3261
MIR16-1	0	genome.wustl.edu	37	13	50623163	50623163	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	50623163	50623163	C	T	SNP	MIR16-1	ENST00000385271	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR16-1	HGNC	ENSG00000208006				111	0	0	79	38	32.4786
CCDC70	0	genome.wustl.edu	37	13	52439685	52439685	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	52439685	52439685	T	G	SNP	CCDC70	ENST00000242819	human	ensembl	74_37	+1	known	missense	c.171	p.I57M	0.000	NULL	NULL	-	no_errors	CCDC70	HGNC	ENSG00000123171				122	0	0	77	43	35.8333
ATP7B	0	genome.wustl.edu	37	13	52511798	52511798	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	52511798	52511798	G	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	silent	c.3717	p.V1239	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				195	0	0	71	38	34.8624
ATP7B	0	genome.wustl.edu	37	13	52518371	52518371	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	52518371	52518371	G	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	silent	c.3117	p.V1039	0.999	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				60	0	0	30	15	33.3333
ALG11	0	genome.wustl.edu	37	13	52593158	52593158	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	52593158	52593158	T	A	SNP	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	missense	c.154	p.L52I	0.003	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				96	0	0	75	38	33.6283
NEK5	0	genome.wustl.edu	37	13	52684696	52684696	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	52684696	52684696	T	C	SNP	NEK5	ENST00000355568	human	ensembl	74_37	-1	known	silent	c.330	p.V110	0.966	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168				32	0	0	23	12	34.2857
CKAP2	0	genome.wustl.edu	37	13	53035861	53035861	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	53035861	53035861	A	C	SNP	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	missense	c.903	p.K301N	0.008	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				106	0	0	78	41	34.4538
DIAPH3	0	genome.wustl.edu	37	13	60565365	60565365	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	60565365	60565365	C	A	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	nonsense	c.1288	p.E430*	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				64	0	0	79	26	24.7619
DIAPH3	0	genome.wustl.edu	37	13	60590074	60590074	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	60590074	60590074	C	T	SNP	DIAPH3	ENST00000400324	human	ensembl	74_37	-1	known	silent	c.744	p.Q248	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH3	HGNC	ENSG00000139734				29	0	0	26	8	23.5294
TDRD3	0	genome.wustl.edu	37	13	61034550	61034550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	61034550	61034550	C	T	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.229	p.R77C	1.000	pfam_DUF1767	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				62	0	0	30	18	37.5
TDRD3	0	genome.wustl.edu	37	13	61103068	61103068	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	61103068	61103068	T	C	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	missense	c.1709	p.V570A	1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				49	0	0	22	13	37.1429
TDRD3	0	genome.wustl.edu	37	13	61103094	61103094	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	61103094	61103094	C	T	SNP	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	nonsense	c.1735	p.R579*	0.987	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544				67	0	0	24	16	40
PCDH20	0	genome.wustl.edu	37	13	61986425	61986425	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	61986425	61986425	C	A	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	nonsense	c.1807	p.E603*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				104	0	0	58	33	36.2637
PCDH9	0	genome.wustl.edu	37	13	67800785	67800785	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	67800785	67800785	C	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	silent	c.1788	p.V596	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				207	0	0	133	52	28.1081
PCDH9	0	genome.wustl.edu	37	13	67802424	67802424	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	67802424	67802424	G	T	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	missense	c.149	p.S50Y	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226				110	0	0	75	27	26.4706
DACH1	0	genome.wustl.edu	37	13	72204778	72204778	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	72204778	72204778	T	G	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.1042	p.K348Q	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				238	0	0	141	98	41.0042
DACH1	0	genome.wustl.edu	37	13	72440841	72440841	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	72440841	72440841	A	G	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.67	p.S23P	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				42	0	0	17	9	34.6154
DIS3	0	genome.wustl.edu	37	13	73347916	73347916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	73347916	73347916	C	T	SNP	DIS3	ENST00000377767	human	ensembl	74_37	-1	known	missense	c.1145	p.R382Q	1.000	NULL	smart_PIN_dom	-	no_errors	DIS3	HGNC	ENSG00000083520				70	0	0	60	24	28.5714
COMMD6	0	genome.wustl.edu	37	13	76104344	76104344	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	76104344	76104344	A	C	SNP	COMMD6	ENST00000355801	human	ensembl	74_37	-1	known	missense	c.113	p.L38R	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD6	HGNC	ENSG00000188243				110	0	0	72	38	34.5455
LMO7	0	genome.wustl.edu	37	13	76393550	76393550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	76393550	76393550	C	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.2242	p.R748C	1.000	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153				102	0	0	53	30	36.1446
MYCBP2	0	genome.wustl.edu	37	13	77751940	77751940	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	77751940	77751940	G	T	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.5283	p.F1761L	1.000	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				85	0	0	46	33	41.7722
MYCBP2	0	genome.wustl.edu	37	13	77817210	77817210	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	77817210	77817210	T	G	SNP	MYCBP2	ENST00000407578	human	ensembl	74_37	-1	known	missense	c.2613	p.R871S	1.000	superfamily_RCC1/BLIP-II,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_RCC1/BLIP-II,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810				102	0	0	67	28	29.4737
SCEL	0	genome.wustl.edu	37	13	78178498	78178498	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	78178498	78178498	G	T	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	missense	c.1105	p.D369Y	1.000	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				109	0	0	72	44	37.931
SCEL	0	genome.wustl.edu	37	13	78188041	78188041	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	78188041	78188041	C	A	SNP	SCEL	ENST00000349847	human	ensembl	74_37	+1	known	missense	c.1402	p.L468I	0.983	NULL	smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	SCEL	HGNC	ENSG00000136155				129	0	0	76	33	30.2752
EDNRB	0	genome.wustl.edu	37	13	78472431	78472431	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	78472431	78472431	T	C	SNP	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	silent	c.1233	p.K411	1.000	prints_ETB_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				78	0	0	43	18	29.5082
PTMAP5	0	genome.wustl.edu	37	13	82265085	82265085	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	82265085	82265085	G	T	SNP	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				89	0	0	73	29	28.4314
SLITRK1	0	genome.wustl.edu	37	13	84453915	84453915	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84453915	84453915	C	A	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1728	p.E576D	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				63	0	0	27	16	37.2093
SLITRK1	0	genome.wustl.edu	37	13	84453995	84453995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84453995	84453995	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1648	p.E550K	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				82	0	0	42	6	12.5
SLITRK1	0	genome.wustl.edu	37	13	84454115	84454115	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84454115	84454115	G	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1528	p.P510T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				77	0	0	42	20	32.2581
SLITRK1	0	genome.wustl.edu	37	13	84454919	84454919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84454919	84454919	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.724	p.E242K	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				104	0	0	46	28	37.8378
SLITRK1	0	genome.wustl.edu	37	13	84455355	84455355	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84455355	84455355	T	G	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.288	p.E96D	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				144	0	0	81	43	34.6774
SLITRK5	0	genome.wustl.edu	37	13	88328019	88328019	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	88328019	88328019	C	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.376	p.H126N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				191	0	0	106	64	37.6471
SLITRK5	0	genome.wustl.edu	37	13	88328996	88328996	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	88328996	88328996	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1353	p.R451	0.995	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				68	0	0	49	25	33.7838
SLITRK5	0	genome.wustl.edu	37	13	88329437	88329437	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	88329437	88329437	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1794	p.F598	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				258	0	0	137	50	26.738
GPC6	0	genome.wustl.edu	37	13	94958302	94958302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	94958302	94958302	T	G	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	missense	c.1077	p.N359K	0.900	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098				167	0	0	133	59	30.7292
ABCC4	0	genome.wustl.edu	37	13	95840745	95840745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	95840745	95840745	C	T	SNP	ABCC4	ENST00000376887	human	ensembl	74_37	-1	known	missense	c.1315	p.E439K	0.982	superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM	-	no_errors	ABCC4	HGNC	ENSG00000125257				133	0	0	77	27	25.9615
CLDN10	0	genome.wustl.edu	37	13	96212483	96212483	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	96212483	96212483	C	T	SNP	CLDN10	ENST00000299339	human	ensembl	74_37	+1	known	silent	c.318	p.V106	0.819	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin10,prints_Claudin	-	no_errors	CLDN10	HGNC	ENSG00000134873				127	0	0	60	40	40
DZIP1	0	genome.wustl.edu	37	13	96293613	96293613	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	96293613	96293613	T	G	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	missense	c.533	p.K178T	0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				72	0	0	25	26	50.9804
RNF113B	0	genome.wustl.edu	37	13	98828929	98828929	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	98828929	98828929	G	A	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	missense	c.562	p.R188C	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797				130	0	0	52	35	40.2299
FARP1	0	genome.wustl.edu	37	13	98896956	98896956	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	98896956	98896956	T	G	SNP	FARP1	ENST00000376581	human	ensembl	74_37	+1	known	missense	c.383	p.L128R	0.001	NULL	NULL	-	no_errors	FARP1	HGNC	ENSG00000152767				95	0	0	54	29	34.9398
STK24	0	genome.wustl.edu	37	13	99115970	99115970	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	99115970	99115970	C	T	SNP	STK24	ENST00000376547	human	ensembl	74_37	-1	known	missense	c.940	p.D314N	0.996	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572				64	0	0	43	23	34.8485
SLC15A1	0	genome.wustl.edu	37	13	99358407	99358407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	99358407	99358407	G	A	SNP	SLC15A1	ENST00000376503	human	ensembl	74_37	-1	known	missense	c.1250	p.T417I	0.000	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A1	HGNC	ENSG00000088386				74	0	0	55	31	36.0465
DOCK9	0	genome.wustl.edu	37	13	99505740	99505740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	99505740	99505740	G	A	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.3871	p.R1291C	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				258	0	0	151	95	38.6179
DOCK9	0	genome.wustl.edu	37	13	99532212	99532212	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	99532212	99532212	A	C	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	missense	c.2886	p.F962L	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				51	0	0	39	23	37.0968
SNORD114-21	0	genome.wustl.edu	37	14	101448346	101448346	+	RNA	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	101448346	101448346	A	T	SNP	SNORD114-21	ENST00000606412	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD114-21	HGNC	ENSG00000272344				167	0	0	114	58	33.7209
MIR1197	0	genome.wustl.edu	37	14	101491968	101491968	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	101491968	101491968	G	A	SNP	MIR1197	ENST00000408818	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR1197	HGNC	ENSG00000221745				118	0	0	50	24	32.4324
MIR381	0	genome.wustl.edu	37	14	101512287	101512287	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	101512287	101512287	C	T	SNP	MIR381	ENST00000362150	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR381	HGNC	ENSG00000199020				28	0	0	10	4	28.5714
MIR382	0	genome.wustl.edu	37	14	101520682	101520682	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	101520682	101520682	T	G	SNP	MIR382	ENST00000385009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	MIR382	HGNC	ENSG00000207742				36	0	0	26	10	27.7778
MIR377	0	genome.wustl.edu	37	14	101528414	101528414	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	101528414	101528414	C	T	SNP	MIR377	ENST00000362145	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR377	HGNC	ENSG00000199015				159	1	0.625	100	43	30.0699
DYNC1H1	0	genome.wustl.edu	37	14	102481480	102481480	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	102481480	102481480	G	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	silent	c.7053	p.A2351	0.685	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				146	0	0	65	41	38.6792
WDR20	0	genome.wustl.edu	37	14	102676053	102676053	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	102676053	102676053	C	T	SNP	WDR20	ENST00000454394	human	ensembl	74_37	+1	known	nonsense	c.1639	p.R547*	0.998	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR20	HGNC	ENSG00000140153				151	0	0	76	34	30.9091
ANKRD9	0	genome.wustl.edu	37	14	102973383	102973383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	102973383	102973383	C	T	SNP	ANKRD9	ENST00000286918	human	ensembl	74_37	-1	known	missense	c.844	p.A282T	0.867	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD9	HGNC	ENSG00000156381				12	0	0	10	5	33.3333
TRAF3	0	genome.wustl.edu	37	14	103341991	103341991	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103341991	103341991	A	C	SNP	TRAF3	ENST00000392745	human	ensembl	74_37	+1	known	missense	c.328	p.I110L	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323				184	0	0	104	54	34.1772
CDC42BPB	0	genome.wustl.edu	37	14	103447311	103447311	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103447311	103447311	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	silent	c.939	p.A313	0.019	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				118	0	0	67	32	32.3232
CDC42BPB	0	genome.wustl.edu	37	14	103474857	103474857	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103474857	103474857	A	C	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.303	p.I101M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				85	0	0	31	28	47.4576
CDC42BPB	0	genome.wustl.edu	37	14	103474861	103474861	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103474861	103474861	C	T	SNP	CDC42BPB	ENST00000361246	human	ensembl	74_37	-1	known	missense	c.299	p.R100Q	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	CDC42BPB	HGNC	ENSG00000198752				89	0	0	45	13	22.4138
EIF5	0	genome.wustl.edu	37	14	103803470	103803470	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103803470	103803470	G	A	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	silent	c.345	p.K115	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				92	0	0	49	23	31.9444
MARK3	0	genome.wustl.edu	37	14	103871548	103871548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	103871548	103871548	G	A	SNP	MARK3	ENST00000429436	human	ensembl	74_37	+1	known	missense	c.187	p.G63S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MARK3	HGNC	ENSG00000075413				91	0	0	37	24	39.3443
XRCC3	0	genome.wustl.edu	37	14	104174984	104174984	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	104174984	104174984	G	A	SNP	XRCC3	ENST00000352127	human	ensembl	74_37	-1	known	missense	c.68	p.S23L	0.912	pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC3	HGNC	ENSG00000126215				62	0	0	43	22	33.8462
TDRD9	0	genome.wustl.edu	37	14	104484456	104484456	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	104484456	104484456	C	A	SNP	TDRD9	ENST00000409874	human	ensembl	74_37	+1	known	missense	c.2359	p.L787I	0.231	NULL	pfam_Helicase-assoc_dom,pfam_Tudor,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,smart_Tudor,pfscan_Tudor,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TDRD9	HGNC	ENSG00000156414				21	0	0	8	7	46.6667
ASPG	0	genome.wustl.edu	37	14	104570738	104570738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	104570738	104570738	G	A	SNP	ASPG	ENST00000455920	human	ensembl	74_37	+1	known	missense	c.851	p.R284Q	0.049	pfam_Asparaginase/glutaminase,superfamily_Asparaginase/glutaminase,smart_Asparaginase/glutaminase,tigrfam_AsnASEI	pfam_Asparaginase/glutaminase,pfam_Ankyrin_rpt,superfamily_Asparaginase/glutaminase,superfamily_Ankyrin_rpt-contain_dom,smart_Asparaginase/glutaminase,smart_Ankyrin_rpt,prints_Asparaginase/glutaminase,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_AsnASEI	-	no_errors	ASPG	HGNC	ENSG00000166183				83	0	0	32	15	31.9149
CEP170B	0	genome.wustl.edu	37	14	105360682	105360682	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	105360682	105360682	G	A	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	silent	c.4440	p.E1480	0.998	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				108	0	0	45	26	36.6197
AHNAK2	0	genome.wustl.edu	37	14	105410777	105410777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	105410777	105410777	C	T	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11011	p.D3671N	0.731	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				379	0	0	175	89	33.7121
OR11H12	0	genome.wustl.edu	37	14	19378253	19378253	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	19378253	19378253	A	C	SNP	OR11H12	ENST00000550708	human	ensembl	74_37	+1	known	missense	c.660	p.L220F	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H12	HGNC	ENSG00000257115				48	0	0	37	8	17.7778
POTEM	0	genome.wustl.edu	37	14	20002239	20002239	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20002239	20002239	T	G	SNP	POTEM	ENST00000547848	human	ensembl	74_37	-1	known	missense	c.1183	p.N395H	0.235	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537				45	0	0	29	4	12.1212
POTEM	0	genome.wustl.edu	37	14	20019848	20019848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20019848	20019848	C	T	SNP	POTEM	ENST00000547848	human	ensembl	74_37	-1	known	missense	c.373	p.D125N	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537				288	0	0	147	74	33.4842
OR4Q3	0	genome.wustl.edu	37	14	20215602	20215602	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20215602	20215602	G	T	SNP	OR4Q3	ENST00000331723	human	ensembl	74_37	+1	known	missense	c.16	p.D6Y	0.026	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4Q3	HGNC	ENSG00000182652				81	0	0	52	27	34.1772
OR4K2	0	genome.wustl.edu	37	14	20344641	20344641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20344641	20344641	C	T	SNP	OR4K2	ENST00000298642	human	ensembl	74_37	+1	known	missense	c.215	p.S72F	0.797	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K2	HGNC	ENSG00000165762				320	0	0	181	96	34.657
OR4K5	0	genome.wustl.edu	37	14	20388847	20388847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20388847	20388847	T	C	SNP	OR4K5	ENST00000315915	human	ensembl	74_37	+1	known	missense	c.82	p.F28L	0.130	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K5	HGNC	ENSG00000176281				94	0	0	86	41	32.2835
OR4K1	0	genome.wustl.edu	37	14	20403995	20403995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20403995	20403995	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	missense	c.170	p.S57F	0.958	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				198	0	0	146	61	29.4686
OR4K15	0	genome.wustl.edu	37	14	20444053	20444053	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20444053	20444053	T	A	SNP	OR4K15	ENST00000305051	human	ensembl	74_37	+1	known	missense	c.376	p.F126I	0.349	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K15	HGNC	ENSG00000169488				235	0	0	127	66	34.1969
OR4K17	0	genome.wustl.edu	37	14	20586157	20586157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20586157	20586157	C	T	SNP	OR4K17	ENST00000315543	human	ensembl	74_37	+1	known	missense	c.592	p.P198S	0.084	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K17	HGNC	ENSG00000176230				216	0	0	119	63	34.6154
OR4N5	0	genome.wustl.edu	37	14	20612757	20612757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20612757	20612757	C	T	SNP	OR4N5	ENST00000333629	human	ensembl	74_37	+1	known	missense	c.863	p.T288M	0.961	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4N5	HGNC	ENSG00000184394				209	0	0	112	59	34.5029
OR11H6	0	genome.wustl.edu	37	14	20692668	20692668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20692668	20692668	C	T	SNP	OR11H6	ENST00000315519	human	ensembl	74_37	+1	known	missense	c.800	p.S267F	0.341	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H6	HGNC	ENSG00000176219				138	0	0	62	35	36.0825
PARP2	0	genome.wustl.edu	37	14	20825671	20825671	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20825671	20825671	C	T	SNP	PARP2	ENST00000250416	human	ensembl	74_37	+1	known	silent	c.1584	p.F528	0.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP2	HGNC	ENSG00000129484				99	0	0	64	22	25.5814
TEP1	0	genome.wustl.edu	37	14	20848099	20848099	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20848099	20848099	C	A	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.5117	p.R1706I	0.552	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				75	0	0	25	21	45.6522
TEP1	0	genome.wustl.edu	37	14	20848577	20848577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20848577	20848577	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.4820	p.R1607H	0.266	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				107	0	0	77	5	6.09756
TEP1	0	genome.wustl.edu	37	14	20854649	20854649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	20854649	20854649	C	T	SNP	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	missense	c.2818	p.D940N	1.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				54	0	0	32	15	31.9149
RNASE4	0	genome.wustl.edu	37	14	21167907	21167907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21167907	21167907	C	T	SNP	RNASE4	ENST00000304704	human	ensembl	74_37	+1	known	missense	c.377	p.A126V	0.001	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE4	HGNC	ENSG00000258818				253	0	0	132	48	26.6667
EDDM3A	0	genome.wustl.edu	37	14	21216071	21216071	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21216071	21216071	A	G	SNP	EDDM3A	ENST00000326842	human	ensembl	74_37	+1	known	missense	c.332	p.N111S	0.000	superfamily_RNaseA_domain	superfamily_RNaseA_domain	-	no_errors	EDDM3A	HGNC	ENSG00000181562				95	0	0	54	32	37.2093
METTL17	0	genome.wustl.edu	37	14	21458737	21458737	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21458737	21458737	A	C	SNP	METTL17	ENST00000382985	human	ensembl	74_37	+1	known	missense	c.344	p.K115T	0.865	NULL	pfam_Ribosomal_Rsm22_bac-type,pfam_Methyltransf_11	-	no_errors	METTL17	HGNC	ENSG00000165792				74	0	0	35	16	31.3725
RNASE7	0	genome.wustl.edu	37	14	21511513	21511513	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21511513	21511513	A	T	SNP	RNASE7	ENST00000298690	human	ensembl	74_37	+1	known	missense	c.362	p.Y121F	0.560	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE7	HGNC	ENSG00000165799				180	0	0	129	24	15.6863
ARHGEF40	0	genome.wustl.edu	37	14	21541393	21541393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21541393	21541393	G	A	SNP	ARHGEF40	ENST00000298694	human	ensembl	74_37	+1	known	missense	c.193	p.E65K	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF40	HGNC	ENSG00000165801				34	0	0	12	9	42.8571
RPGRIP1	0	genome.wustl.edu	37	14	21756217	21756217	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21756217	21756217	A	G	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.82	p.K28E	0.196	NULL	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				144	0	0	83	36	30.2521
RPGRIP1	0	genome.wustl.edu	37	14	21792917	21792917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21792917	21792917	G	A	SNP	RPGRIP1	ENST00000206660	human	ensembl	74_37	+1	known	missense	c.1903	p.A635T	1.000	pfam_DUF3250	pfam_DUF3250,superfamily_C2_dom	-	no_errors	RPGRIP1	HGNC	ENSG00000092200				179	0	0	100	46	31.5068
CHD8	0	genome.wustl.edu	37	14	21882509	21882509	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21882509	21882509	A	C	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	nonsense	c.2093	p.L698*	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				11	0	0	2	3	60
SALL2	0	genome.wustl.edu	37	14	21992741	21992741	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	21992741	21992741	T	G	SNP	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	missense	c.1121	p.K374T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				102	0	0	47	27	36.4865
OR10G3	0	genome.wustl.edu	37	14	22038511	22038511	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	22038511	22038511	T	C	SNP	OR10G3	ENST00000303532	human	ensembl	74_37	-1	known	missense	c.365	p.D122G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208				87	0	0	52	33	38.8235
MMP14	0	genome.wustl.edu	37	14	23314568	23314568	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23314568	23314568	C	T	SNP	MMP14	ENST00000311852	human	ensembl	74_37	+1	known	silent	c.1410	p.S470	0.091	pirsf_Pept_M10A_Metazoans,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP14	HGNC	ENSG00000157227				59	0	0	22	11	33.3333
PSMB11	0	genome.wustl.edu	37	14	23512164	23512164	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23512164	23512164	C	A	SNP	PSMB11	ENST00000408907	human	ensembl	74_37	+1	known	missense	c.730	p.L244M	0.918	NULL	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB11	HGNC	ENSG00000222028				70	0	0	32	15	31.9149
ACIN1	0	genome.wustl.edu	37	14	23551042	23551042	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23551042	23551042	T	G	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.614	p.K205T	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				104	0	0	72	27	27.2727
HOMEZ	0	genome.wustl.edu	37	14	23745818	23745818	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23745818	23745818	T	C	SNP	HOMEZ	ENST00000431326	human	ensembl	74_37	-1	known	missense	c.625	p.T209A	0.002	NULL	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOMEZ	HGNC	ENSG00000215271				147	0	0	101	47	31.7568
MYH6	0	genome.wustl.edu	37	14	23869930	23869930	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23869930	23869930	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	silent	c.1398	p.F466	0.998	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				96	0	0	55	27	32.9268
MYH6	0	genome.wustl.edu	37	14	23876239	23876239	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23876239	23876239	T	G	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.194	p.N65T	0.879	pfam_Myosin_N,superfamily_P-loop_NTPase	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616				620	1	0.161031	284	120	29.703
MYH7	0	genome.wustl.edu	37	14	23885495	23885495	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23885495	23885495	C	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.4671	p.K1557N	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				232	0	0	98	52	34.6667
MYH7	0	genome.wustl.edu	37	14	23893979	23893979	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23893979	23893979	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.2678	p.A893V	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054				79	0	0	26	47	64.3836
NGDN	0	genome.wustl.edu	37	14	23946730	23946730	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	23946730	23946730	A	C	SNP	NGDN	ENST00000408901	human	ensembl	74_37	+1	known	missense	c.889	p.K297Q	1.000	NULL	pfam_Sas10/Utp3/C1D	-	no_errors	NGDN	HGNC	ENSG00000129460				71	0	0	35	13	27.0833
AP1G2	0	genome.wustl.edu	37	14	24034396	24034396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	24034396	24034396	G	A	SNP	AP1G2	ENST00000308724	human	ensembl	74_37	-1	known	missense	c.754	p.R252C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983				53	0	0	27	14	34.1463
LRRC16B	0	genome.wustl.edu	37	14	24537875	24537875	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	24537875	24537875	C	A	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	silent	c.3765	p.L1255	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648				69	0	0	37	27	42.1875
GZMB	0	genome.wustl.edu	37	14	25100413	25100413	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	25100413	25100413	G	A	SNP	GZMB	ENST00000382542	human	ensembl	74_37	-1	known	missense	c.710	p.S237F	0.965	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMB	HGNC	ENSG00000100453				87	0	0	55	15	21.4286
NOVA1	0	genome.wustl.edu	37	14	26949193	26949193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	26949193	26949193	C	T	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	missense	c.437	p.R146H	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				186	1	0.534759	104	61	36.9697
NOVA1	0	genome.wustl.edu	37	14	26949194	26949194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	26949194	26949194	G	A	SNP	NOVA1	ENST00000539517	human	ensembl	74_37	-1	known	missense	c.436	p.R146C	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	NOVA1	HGNC	ENSG00000139910				191	0	0	116	51	30.5389
BNIP3P1	0	genome.wustl.edu	37	14	28734250	28734250	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	28734250	28734250	T	G	SNP	BNIP3P1	ENST00000550043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	BNIP3P1	HGNC	ENSG00000197358				64	0	0	28	15	34.8837
PRKD1	0	genome.wustl.edu	37	14	30068276	30068276	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	30068276	30068276	T	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.2123	p.K708R	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				125	0	0	86	45	34.3511
PRKD1	0	genome.wustl.edu	37	14	30100207	30100207	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	30100207	30100207	A	C	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.1413	p.I471M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				80	0	0	53	18	25.3521
PRKD1	0	genome.wustl.edu	37	14	30107713	30107713	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	30107713	30107713	C	T	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.967	p.E323K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				110	0	0	91	6	6.18557
G2E3	0	genome.wustl.edu	37	14	31085717	31085717	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	31085717	31085717	A	C	SNP	G2E3	ENST00000206595	human	ensembl	74_37	+1	known	missense	c.2098	p.S700R	0.958	NULL	pfam_HECT,superfamily_HECT,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_HECT,pfscan_HECT	-	no_errors	G2E3	HGNC	ENSG00000092140				60	0	0	39	26	40
HECTD1	0	genome.wustl.edu	37	14	31581680	31581680	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	31581680	31581680	G	A	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	silent	c.6220	p.L2074	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				72	0	0	31	12	27.907
HECTD1	0	genome.wustl.edu	37	14	31590701	31590701	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	31590701	31590701	C	T	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	missense	c.5126	p.R1709H	1.000	NULL	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				63	0	0	48	17	26.1538
HECTD1	0	genome.wustl.edu	37	14	31641112	31641112	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	31641112	31641112	T	C	SNP	HECTD1	ENST00000399332	human	ensembl	74_37	-1	known	silent	c.1287	p.S429	0.980	superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_HECT,pfam_Sad1_UNC_C,pfam_Mib_Herc2,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,superfamily_Galactose-bd-like,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT	-	no_errors	HECTD1	HGNC	ENSG00000092148				50	0	0	28	11	28.2051
HEATR5A	0	genome.wustl.edu	37	14	31816982	31816982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	31816982	31816982	G	A	SNP	HEATR5A	ENST00000389961	human	ensembl	74_37	-1	known	missense	c.2822	p.A941V	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5A	HGNC	ENSG00000129493				31	0	0	38	12	24
AKAP6	0	genome.wustl.edu	37	14	33016131	33016131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	33016131	33016131	T	G	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.2272	p.S758A	0.979	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				148	0	0	84	34	28.8136
AKAP6	0	genome.wustl.edu	37	14	33293854	33293854	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	33293854	33293854	G	T	SNP	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	missense	c.6835	p.D2279Y	0.009	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				120	0	0	64	41	39.0476
NPAS3	0	genome.wustl.edu	37	14	33684409	33684409	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	33684409	33684409	G	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.162	p.E54D	1.000	superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				93	0	0	59	19	24.359
BAZ1A	0	genome.wustl.edu	37	14	35222877	35222877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	35222877	35222877	G	A	SNP	BAZ1A	ENST00000360310	human	ensembl	74_37	-1	known	missense	c.4508	p.S1503L	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1A	HGNC	ENSG00000198604				65	0	0	28	23	45.098
SRP54	0	genome.wustl.edu	37	14	35482598	35482598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	35482598	35482598	C	T	SNP	SRP54	ENST00000216774	human	ensembl	74_37	+1	known	missense	c.683	p.A228V	1.000	pfam_SRP54_GTPase_dom,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	pfam_SRP54_GTPase_dom,pfam_Signal_recog_particle_SRP54_M,pfam_Signal_recog_particl_SRP54_hlx,pfam_CobW/HypB/UreG_dom,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP54_M,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom,tigrfam_SRP54_euk	-	no_errors	SRP54	HGNC	ENSG00000100883				121	0	0	60	21	25.9259
RALGAPA1	0	genome.wustl.edu	37	14	36096544	36096544	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	36096544	36096544	C	T	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	silent	c.5232	p.Q1744	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				104	0	0	80	34	29.8246
RALGAPA1	0	genome.wustl.edu	37	14	36123671	36123671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	36123671	36123671	T	C	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.4132	p.T1378A	1.000	superfamily_ARM-type_fold	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				42	0	0	23	21	47.7273
PAX9	0	genome.wustl.edu	37	14	37145483	37145483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	37145483	37145483	G	A	SNP	PAX9	ENST00000554201	human	ensembl	74_37	+1	putative	missense	c.281	p.R94H	0.993	NULL	NULL	-	no_errors	PAX9	HGNC	ENSG00000198807				209	0	0	128	46	26.4368
SLC25A21	0	genome.wustl.edu	37	14	37283144	37283144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	37283144	37283144	C	T	SNP	SLC25A21	ENST00000331299	human	ensembl	74_37	-1	known	missense	c.182	p.R61Q	0.421	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A21	HGNC	ENSG00000183032				56	0	0	53	24	31.1688
MIPOL1	0	genome.wustl.edu	37	14	37736309	37736309	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	37736309	37736309	G	A	SNP	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	silent	c.186	p.T62	0.051	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				88	0	0	73	27	27
MIPOL1	0	genome.wustl.edu	37	14	37737950	37737950	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	37737950	37737950	A	C	SNP	MIPOL1	ENST00000327441	human	ensembl	74_37	+1	known	silent	c.339	p.I113	0.792	NULL	NULL	-	no_errors	MIPOL1	HGNC	ENSG00000151338				145	0	0	109	75	40.7609
CLEC14A	0	genome.wustl.edu	37	14	38724535	38724535	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	38724535	38724535	G	A	SNP	CLEC14A	ENST00000342213	human	ensembl	74_37	-1	known	silent	c.693	p.I231	0.000	NULL	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC14A	HGNC	ENSG00000176435				360	0	0	175	83	32.1705
SEC23A	0	genome.wustl.edu	37	14	39556144	39556144	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	39556144	39556144	A	G	SNP	SEC23A	ENST00000307712	human	ensembl	74_37	-1	known	silent	c.672	p.P224	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC23A	HGNC	ENSG00000100934				93	0	0	50	24	32.4324
MIA2	0	genome.wustl.edu	37	14	39716573	39716573	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	39716573	39716573	G	A	SNP	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	silent	c.792	p.E264	0.914	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				119	0	0	69	33	32.3529
MIA2	0	genome.wustl.edu	37	14	39716613	39716613	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	39716613	39716613	G	T	SNP	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	nonsense	c.832	p.E278*	0.228	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				138	1	0.719424	76	41	35.0427
FBXO33	0	genome.wustl.edu	37	14	39870682	39870682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	39870682	39870682	C	T	SNP	FBXO33	ENST00000298097	human	ensembl	74_37	-1	known	missense	c.1094	p.R365Q	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO33	HGNC	ENSG00000165355				121	0	0	71	36	33.6449
FBXO33	0	genome.wustl.edu	37	14	39870866	39870866	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	39870866	39870866	G	A	SNP	FBXO33	ENST00000298097	human	ensembl	74_37	-1	known	nonsense	c.910	p.R304*	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO33	HGNC	ENSG00000165355				145	0	0	90	45	33.3333
FAM179B	0	genome.wustl.edu	37	14	45431763	45431763	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45431763	45431763	A	C	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.139	p.N47H	0.988	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				58	0	0	33	18	35.2941
FAM179B	0	genome.wustl.edu	37	14	45432816	45432816	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45432816	45432816	T	C	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	silent	c.1192	p.L398	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				139	0	0	87	38	30.4
FAM179B	0	genome.wustl.edu	37	14	45433587	45433587	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45433587	45433587	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	nonsense	c.1963	p.G655*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				65	0	0	42	23	35.3846
FKBP3	0	genome.wustl.edu	37	14	45587237	45587237	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45587237	45587237	T	C	SNP	FKBP3	ENST00000216330	human	ensembl	74_37	-1	known	missense	c.614	p.D205G	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP3	HGNC	ENSG00000100442				177	0	0	94	46	32.8571
FANCM	0	genome.wustl.edu	37	14	45606351	45606351	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45606351	45606351	T	C	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	silent	c.588	p.N196	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				92	0	0	49	20	28.9855
FANCM	0	genome.wustl.edu	37	14	45618133	45618133	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	45618133	45618133	A	C	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.853	p.K285Q	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				55	0	0	33	21	38.8889
RPL10L	0	genome.wustl.edu	37	14	47120402	47120402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	47120402	47120402	C	T	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	0.997	pirsf_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				140	0	0	83	41	33.0645
MDGA2	0	genome.wustl.edu	37	14	47342659	47342659	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	47342659	47342659	T	C	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.2729	p.Y910C	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				120	0	0	73	38	34.2342
MDGA2	0	genome.wustl.edu	37	14	47343401	47343401	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	47343401	47343401	C	A	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	nonsense	c.2440	p.E814*	1.000	superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				45	0	0	33	21	38.8889
MDGA2	0	genome.wustl.edu	37	14	47600940	47600940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	47600940	47600940	G	A	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.902	p.S301L	0.995	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				111	0	0	73	36	33.0275
ENSG00000258377	0	genome.wustl.edu	37	14	50087971	50087971	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	50087971	50087971	C	A	SNP	ENSG00000258377	ENST00000555043	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.129	-	-	-	no_errors	RP11-649E7.5	Clone_based_vega_gene	ENSG00000258377				57	0	0	42	19	31.1475
DNAAF2	0	genome.wustl.edu	37	14	50100024	50100024	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	50100024	50100024	A	G	SNP	DNAAF2	ENST00000298292	human	ensembl	74_37	-1	known	missense	c.1844	p.V615A	0.584	NULL	pfam_PIH	-	no_errors	DNAAF2	HGNC	ENSG00000165506				62	0	0	37	13	26
ATL1	0	genome.wustl.edu	37	14	51099045	51099045	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	51099045	51099045	G	T	SNP	ATL1	ENST00000357032	human	ensembl	74_37	+1	known	missense	c.1665	p.K555N	1.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_P-loop_NTPase,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513				41	0	0	35	12	25.5319
NIN	0	genome.wustl.edu	37	14	51239123	51239123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	51239123	51239123	G	A	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.877	p.R293W	1.000	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				75	0	0	53	21	28.3784
ABHD12B	0	genome.wustl.edu	37	14	51345491	51345491	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	51345491	51345491	G	T	SNP	ABHD12B	ENST00000382029	human	ensembl	74_37	+1	known	nonsense	c.133	p.E45*	1.000	NULL	NULL	-	no_errors	ABHD12B	HGNC	ENSG00000131969				97	0	0	58	31	34.8315
TRIM9	0	genome.wustl.edu	37	14	51475949	51475949	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	51475949	51475949	A	C	SNP	TRIM9	ENST00000338969	human	ensembl	74_37	-1	known	missense	c.1155	p.I385M	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505				106	0	0	53	26	32.9114
FRMD6	0	genome.wustl.edu	37	14	52174833	52174833	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	52174833	52174833	A	G	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	missense	c.596	p.H199R	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				79	0	0	52	14	21.2121
PTGER2	0	genome.wustl.edu	37	14	52793970	52793970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	52793970	52793970	G	A	SNP	PTGER2	ENST00000245457	human	ensembl	74_37	+1	known	missense	c.875	p.R292Q	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Prostglndn_EP2_rcpt,prints_Prostanoid_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGER2	HGNC	ENSG00000125384				53	0	0	44	22	33.3333
FERMT2	0	genome.wustl.edu	37	14	53331516	53331516	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	53331516	53331516	G	T	SNP	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	silent	c.1329	p.L443	1.000	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				155	0	0	146	49	25.1282
GMFB	0	genome.wustl.edu	37	14	54950455	54950455	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	54950455	54950455	C	T	SNP	GMFB	ENST00000358056	human	ensembl	74_37	-1	known	missense	c.34	p.E12K	1.000	smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,pirsf_GMF-beta	-	no_errors	GMFB	HGNC	ENSG00000197045				44	0	0	41	20	32.7869
WDHD1	0	genome.wustl.edu	37	14	55455824	55455824	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	55455824	55455824	T	G	SNP	WDHD1	ENST00000360586	human	ensembl	74_37	-1	known	missense	c.1448	p.N483T	1.000	NULL	pfam_WD40_repeat,pfam_DUF3639,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,superfamily_HMG_box_dom,smart_WD40_repeat,smart_HMG_box_dom,pfscan_HMG_box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDHD1	HGNC	ENSG00000198554				124	0	0	152	9	5.59006
ATG14	0	genome.wustl.edu	37	14	55844739	55844739	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	55844739	55844739	T	G	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	missense	c.1049	p.K350T	1.000	pfam_UV_resistance/autophagy_Atg14	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775				49	0	0	53	4	7.01754
KTN1	0	genome.wustl.edu	37	14	56078947	56078947	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	56078947	56078947	A	C	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.181	p.K61Q	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				40	0	0	35	15	30
KTN1	0	genome.wustl.edu	37	14	56099965	56099965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	56099965	56099965	C	T	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.1234	p.R412C	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				43	0	0	25	19	43.1818
KTN1	0	genome.wustl.edu	37	14	56117309	56117309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	56117309	56117309	C	T	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.2519	p.A840V	1.000	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				102	0	0	57	25	30.4878
KTN1	0	genome.wustl.edu	37	14	56137449	56137449	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	56137449	56137449	T	G	SNP	KTN1	ENST00000395309	human	ensembl	74_37	+1	known	missense	c.3270	p.S1090R	0.995	NULL	NULL	-	no_errors	KTN1	HGNC	ENSG00000126777				61	0	0	40	25	38.4615
TMEM260	0	genome.wustl.edu	37	14	57083995	57083995	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	57083995	57083995	A	C	SNP	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	missense	c.1036	p.K346Q	1.000	NULL	pfam_DUF2723	-	no_errors	TMEM260	HGNC	ENSG00000070269				38	0	0	56	25	30.8642
TMEM260	0	genome.wustl.edu	37	14	57092214	57092214	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	57092214	57092214	T	C	SNP	TMEM260	ENST00000261556	human	ensembl	74_37	+1	known	missense	c.1513	p.F505L	1.000	NULL	pfam_DUF2723	-	no_errors	TMEM260	HGNC	ENSG00000070269				99	0	0	56	28	33.3333
EXOC5	0	genome.wustl.edu	37	14	57675371	57675371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	57675371	57675371	G	A	SNP	EXOC5	ENST00000413566	human	ensembl	74_37	-1	known	missense	c.2083	p.R695C	1.000	pfam_Sec10-like	pfam_Sec10-like	-	no_errors	EXOC5	HGNC	ENSG00000070367				199	0	0	142	47	24.8677
ENSG00000258856	0	genome.wustl.edu	37	14	58097129	58097129	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58097129	58097129	C	A	SNP	ENSG00000258856	ENST00000600311	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.893	-	-	-	no_errors	CTD-2325K12.1	Clone_based_vega_gene	ENSG00000258856				160	0	0	84	43	33.8583
ARID4A	0	genome.wustl.edu	37	14	58814545	58814545	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58814545	58814545	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	silent	c.1353	p.I451	0.075	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				78	0	0	64	27	29.6703
ARID4A	0	genome.wustl.edu	37	14	58831856	58831856	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58831856	58831856	C	T	SNP	ARID4A	ENST00000355431	human	ensembl	74_37	+1	known	nonsense	c.3049	p.R1017*	0.999	NULL	pfam_RBB1NT,pfam_ARID/BRIGHT_DNA-bd,pfam_Tudor-knot,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Chromodomain-like,smart_Tudor,smart_ARID/BRIGHT_DNA-bd,smart_Chromo_domain/shadow,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID4A	HGNC	ENSG00000032219				196	0	0	121	61	33.5165
TIMM9	0	genome.wustl.edu	37	14	58875730	58875730	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58875730	58875730	A	C	SNP	TIMM9	ENST00000216463	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	TIMM9	HGNC	ENSG00000100575				116	0	0	58	30	34.0909
KIAA0586	0	genome.wustl.edu	37	14	58932632	58932632	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58932632	58932632	T	G	SNP	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	missense	c.2094	p.H698Q	0.005	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				112	0	0	81	36	30.7692
KIAA0586	0	genome.wustl.edu	37	14	58987853	58987853	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	58987853	58987853	G	A	SNP	KIAA0586	ENST00000557392	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.858	-	-	-	no_errors	KIAA0586	HGNC	ENSG00000100578				15	0	0	15	5	25
GPR135	0	genome.wustl.edu	37	14	59930948	59930948	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	59930948	59930948	C	T	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	missense	c.997	p.V333I	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619				65	0	0	32	9	21.9512
JKAMP	0	genome.wustl.edu	37	14	59965469	59965469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	59965469	59965469	C	T	SNP	JKAMP	ENST00000555491	human	ensembl	74_37	+1	known	missense	c.346	p.R116C	0.983	pfam_DUF766	pfam_DUF766	-	no_errors	JKAMP	HGNC	ENSG00000050130				32	0	0	15	6	28.5714
RTN1	0	genome.wustl.edu	37	14	60063484	60063484	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	60063484	60063484	G	A	SNP	RTN1	ENST00000267484	human	ensembl	74_37	-1	known	silent	c.2310	p.G770	0.107	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN1	HGNC	ENSG00000139970				167	1	0.595238	88	33	27.2727
DHRS7	0	genome.wustl.edu	37	14	60619866	60619866	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	60619866	60619866	A	G	SNP	DHRS7	ENST00000216500	human	ensembl	74_37	-1	known	missense	c.424	p.S142P	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7	HGNC	ENSG00000100612				115	0	0	86	32	27.1186
C14orf39	0	genome.wustl.edu	37	14	60921733	60921733	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	60921733	60921733	T	C	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.1489	p.I497V	0.995	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				50	0	0	62	32	34.0426
C14orf39	0	genome.wustl.edu	37	14	60950485	60950485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	60950485	60950485	C	T	SNP	C14orf39	ENST00000321731	human	ensembl	74_37	-1	known	missense	c.157	p.E53K	0.999	NULL	NULL	-	no_errors	C14orf39	HGNC	ENSG00000179008				27	0	0	32	13	28.8889
SIX4	0	genome.wustl.edu	37	14	61180839	61180839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	61180839	61180839	G	T	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	missense	c.1632	p.F544L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625				78	0	0	42	17	28.8136
HIF1A	0	genome.wustl.edu	37	14	62207347	62207347	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	62207347	62207347	T	C	SNP	HIF1A	ENST00000539097	human	ensembl	74_37	+1	known	splice_site	c.1731+2	e11+2	1.000	-	-	-	no_errors	HIF1A	HGNC	ENSG00000100644				67	0	0	53	18	25.3521
HIF1A	0	genome.wustl.edu	37	14	62207893	62207893	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	62207893	62207893	G	A	SNP	HIF1A	ENST00000539097	human	ensembl	74_37	+1	known	missense	c.2152	p.A718T	0.983	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_HIF-1_alpha,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	HIF1A	HGNC	ENSG00000100644				86	0	0	53	21	28.3784
SYT16	0	genome.wustl.edu	37	14	62567180	62567180	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	62567180	62567180	C	T	SNP	SYT16	ENST00000430451	human	ensembl	74_37	+1	novel	missense	c.1693	p.R565W	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT16	HGNC	ENSG00000139973				32	0	0	18	7	28
RHOJ	0	genome.wustl.edu	37	14	63671620	63671620	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	63671620	63671620	C	T	SNP	RHOJ	ENST00000316754	human	ensembl	74_37	+1	known	silent	c.33	p.C11	0.223	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOJ	HGNC	ENSG00000126785				39	0	0	31	12	27.907
PPP2R5E	0	genome.wustl.edu	37	14	64006376	64006376	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64006376	64006376	A	G	SNP	PPP2R5E	ENST00000337537	human	ensembl	74_37	-1	known	missense	c.28	p.S10P	1.000	pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5E	HGNC	ENSG00000154001				113	0	0	68	17	20
SYNE2	0	genome.wustl.edu	37	14	64408676	64408676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64408676	64408676	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.311	p.R104Q	0.510	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				63	0	0	45	18	28.5714
SYNE2	0	genome.wustl.edu	37	14	64453263	64453263	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64453263	64453263	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.2241	p.E747D	0.035	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				116	0	0	65	51	43.9655
SYNE2	0	genome.wustl.edu	37	14	64460662	64460662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64460662	64460662	G	A	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.2756	p.S919N	0.989	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				106	0	0	91	35	27.7778
SYNE2	0	genome.wustl.edu	37	14	64461803	64461803	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64461803	64461803	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.2823	p.K941N	0.799	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				23	0	0	18	18	50
SYNE2	0	genome.wustl.edu	37	14	64461861	64461861	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64461861	64461861	A	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.2881	p.N961H	1.000	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				29	0	0	48	4	7.69231
SYNE2	0	genome.wustl.edu	37	14	64473812	64473812	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64473812	64473812	G	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.4449	p.E1483D	0.878	smart_Spectrin/alpha-actinin	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				166	0	0	112	50	30.8642
SYNE2	0	genome.wustl.edu	37	14	64542723	64542723	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64542723	64542723	C	T	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	nonsense	c.10927	p.R3643*	0.995	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				69	0	0	45	20	30.7692
SYNE2	0	genome.wustl.edu	37	14	64588782	64588782	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64588782	64588782	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.13211	p.F4404C	0.967	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				100	0	0	74	48	39.3443
MTHFD1	0	genome.wustl.edu	37	14	64915014	64915014	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	64915014	64915014	T	G	SNP	MTHFD1	ENST00000216605	human	ensembl	74_37	+1	known	missense	c.2258	p.V753G	0.997	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714				84	0	0	65	6	8.4507
PPP1R36	0	genome.wustl.edu	37	14	65054078	65054078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	65054078	65054078	T	C	SNP	PPP1R36	ENST00000298705	human	ensembl	74_37	+1	known	missense	c.878	p.F293S	1.000	NULL	NULL	-	no_errors	PPP1R36	HGNC	ENSG00000165807				53	0	0	38	18	32.1429
PLEKHG3	0	genome.wustl.edu	37	14	65198128	65198128	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	65198128	65198128	A	G	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.899	p.Y300C	1.000	pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				114	0	0	48	25	34.2466
PLEKHH1	0	genome.wustl.edu	37	14	68040045	68040045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	68040045	68040045	C	T	SNP	PLEKHH1	ENST00000329153	human	ensembl	74_37	+1	known	missense	c.1781	p.T594M	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH1	HGNC	ENSG00000054690				100	0	0	58	11	15.942
PIGH	0	genome.wustl.edu	37	14	68060613	68060613	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	68060613	68060613	A	G	SNP	PIGH	ENST00000558001	human	ensembl	74_37	-1	known	missense	c.232	p.S78P	1.000	NULL	NULL	-	no_errors	PIGH	HGNC	ENSG00000100564				44	0	0	36	15	29.4118
SLC10A1	0	genome.wustl.edu	37	14	70252992	70252992	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70252992	70252992	G	A	SNP	SLC10A1	ENST00000216540	human	ensembl	74_37	-1	known	missense	c.389	p.A130V	1.000	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A1	HGNC	ENSG00000100652				118	0	0	65	23	26.1364
SLC8A3	0	genome.wustl.edu	37	14	70633946	70633946	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70633946	70633946	G	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	silent	c.1194	p.V398	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678				177	0	0	130	66	33.6735
ADAM21P1	0	genome.wustl.edu	37	14	70713935	70713935	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70713935	70713935	A	C	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.847	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				137	0	0	117	19	13.9706
ADAM21P1	0	genome.wustl.edu	37	14	70713986	70713986	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70713986	70713986	C	T	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.553	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				178	0	0	87	36	29.2683
ADAM21	0	genome.wustl.edu	37	14	70924659	70924659	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70924659	70924659	T	G	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	missense	c.443	p.I148S	0.049	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985				60	0	0	37	15	28.8462
ADAM20	0	genome.wustl.edu	37	14	70989418	70989418	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	70989418	70989418	T	G	SNP	ADAM20	ENST00000256389	human	ensembl	74_37	-1	known	missense	c.2207	p.N736T	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM20	HGNC	ENSG00000134007				214	0	0	126	42	25
PCNX	0	genome.wustl.edu	37	14	71443701	71443701	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	71443701	71443701	A	G	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.647	p.D216G	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				119	0	0	63	34	35.0515
PCNX	0	genome.wustl.edu	37	14	71455316	71455316	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	71455316	71455316	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.2344	p.R782C	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				189	0	0	113	52	31.5152
PCNX	0	genome.wustl.edu	37	14	71555976	71555976	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	71555976	71555976	C	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	nonsense	c.5506	p.R1836*	1.000	pfam_Pecanex	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				103	0	0	78	38	32.7586
SIPA1L1	0	genome.wustl.edu	37	14	72169083	72169083	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	72169083	72169083	C	T	SNP	SIPA1L1	ENST00000554874	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				101	0	0	56	24	30
RGS6	0	genome.wustl.edu	37	14	72818878	72818878	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	72818878	72818878	T	G	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.160	p.S54A	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				50	0	0	28	11	28.2051
RGS6	0	genome.wustl.edu	37	14	72941367	72941367	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	72941367	72941367	G	A	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	missense	c.653	p.R218Q	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				48	0	0	37	18	32.7273
RGS6	0	genome.wustl.edu	37	14	72941375	72941375	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	72941375	72941375	C	T	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	nonsense	c.661	p.R221*	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				50	0	0	36	16	30.7692
PSEN1	0	genome.wustl.edu	37	14	73685857	73685857	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	73685857	73685857	T	G	SNP	PSEN1	ENST00000324501	human	ensembl	74_37	+1	known	missense	c.1264	p.L422V	0.584	pfam_Peptidase_A22A,smart_Preselin/SPP	pfam_Peptidase_A22A,smart_Preselin/SPP,prints_Pept_A22A_PS1,prints_Peptidase_A22A	-	no_errors	PSEN1	HGNC	ENSG00000080815				251	0	0	139	73	34.434
PAPLN	0	genome.wustl.edu	37	14	73732141	73732141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	73732141	73732141	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	74_37	+1	known	missense	c.3189	p.M1063I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m	-	no_errors	PAPLN	HGNC	ENSG00000100767				133	0	0	70	28	28.5714
ELMSAN1	0	genome.wustl.edu	37	14	74186171	74186171	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	74186171	74186171	A	G	SNP	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	missense	c.2971	p.S991P	0.821	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				34	0	0	14	9	39.1304
FAM161B	0	genome.wustl.edu	37	14	74404367	74404367	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	74404367	74404367	C	A	SNP	FAM161B	ENST00000286544	human	ensembl	74_37	-1	known	nonsense	c.1792	p.E598*	1.000	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050				142	0	0	94	57	37.7483
FAM161B	0	genome.wustl.edu	37	14	74404379	74404379	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	74404379	74404379	C	A	SNP	FAM161B	ENST00000286544	human	ensembl	74_37	-1	known	nonsense	c.1780	p.E594*	1.000	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161B	HGNC	ENSG00000156050				130	0	0	93	40	30.0752
YLPM1	0	genome.wustl.edu	37	14	75266073	75266073	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75266073	75266073	A	G	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	missense	c.4073	p.E1358G	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596				238	0	0	158	70	30.7018
PROX2	0	genome.wustl.edu	37	14	75329808	75329808	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75329808	75329808	T	G	SNP	PROX2	ENST00000445876	human	ensembl	74_37	-1	known	missense	c.730	p.K244Q	1.000	NULL	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608				82	0	0	38	28	42.4242
PROX2	0	genome.wustl.edu	37	14	75330161	75330161	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75330161	75330161	C	A	SNP	PROX2	ENST00000445876	human	ensembl	74_37	-1	known	missense	c.377	p.R126M	0.859	NULL	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX2	HGNC	ENSG00000119608				39	0	0	17	10	37.037
MLH3	0	genome.wustl.edu	37	14	75513607	75513607	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75513607	75513607	C	A	SNP	MLH3	ENST00000355774	human	ensembl	74_37	-1	known	missense	c.2752	p.D918Y	0.401	NULL	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_WW_dom,smart_MutL_C	-	no_errors	MLH3	HGNC	ENSG00000119684				216	0	0	131	71	35.1485
ZC2HC1C	0	genome.wustl.edu	37	14	75537991	75537991	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75537991	75537991	A	C	SNP	ZC2HC1C	ENST00000524913	human	ensembl	74_37	+1	known	missense	c.715	p.K239Q	1.000	NULL	NULL	-	no_errors	ZC2HC1C	HGNC	ENSG00000119703				87	0	0	45	35	43.75
FOS	0	genome.wustl.edu	37	14	75747600	75747600	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	75747600	75747600	A	G	SNP	FOS	ENST00000303562	human	ensembl	74_37	+1	known	missense	c.616	p.I206V	1.000	prints_Leuzip_Fos	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOS	HGNC	ENSG00000170345				199	0	0	104	41	28.2759
TTLL5	0	genome.wustl.edu	37	14	76330084	76330084	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	76330084	76330084	T	C	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.3401	p.V1134A	0.972	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				136	0	0	89	29	24.5763
TTLL5	0	genome.wustl.edu	37	14	76368544	76368544	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	76368544	76368544	T	G	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.3800	p.F1267C	0.176	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				99	0	0	44	21	32.3077
TTLL5	0	genome.wustl.edu	37	14	76420869	76420869	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	76420869	76420869	G	T	SNP	TTLL5	ENST00000554972	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	TTLL5	HGNC	ENSG00000119685				82	0	0	48	22	31.4286
IFT43	0	genome.wustl.edu	37	14	76549621	76549621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	76549621	76549621	G	A	SNP	IFT43	ENST00000238628	human	ensembl	74_37	+1	known	missense	c.511	p.E171K	1.000	NULL	NULL	-	no_errors	IFT43	HGNC	ENSG00000119650				50	0	0	30	10	25
ESRRB	0	genome.wustl.edu	37	14	76905998	76905998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	76905998	76905998	G	A	SNP	ESRRB	ENST00000380887	human	ensembl	74_37	+1	known	missense	c.302	p.R101H	1.000	smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESRRB	HGNC	ENSG00000119715				89	0	0	43	18	29.5082
VASH1	0	genome.wustl.edu	37	14	77236322	77236322	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	77236322	77236322	T	G	SNP	VASH1	ENST00000167106	human	ensembl	74_37	+1	known	missense	c.326	p.V109G	1.000	NULL	NULL	-	no_errors	VASH1	HGNC	ENSG00000071246				187	0	0	98	32	24.6154
KIAA1737	0	genome.wustl.edu	37	14	77580408	77580408	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	77580408	77580408	G	A	SNP	KIAA1737	ENST00000361786	human	ensembl	74_37	+1	known	missense	c.947	p.R316H	1.000	NULL	NULL	-	no_errors	KIAA1737	HGNC	ENSG00000198894				109	0	0	52	21	28.7671
POMT2	0	genome.wustl.edu	37	14	77746389	77746389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	77746389	77746389	A	G	SNP	POMT2	ENST00000261534	human	ensembl	74_37	-1	known	missense	c.1760	p.F587S	1.000	NULL	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT2	HGNC	ENSG00000009830				84	0	0	55	7	11.2903
SAMD15	0	genome.wustl.edu	37	14	77844125	77844125	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	77844125	77844125	T	G	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.364	p.L122V	0.021	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				245	0	0	143	79	35.5856
NOXRED1	0	genome.wustl.edu	37	14	77873032	77873032	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	77873032	77873032	T	G	SNP	NOXRED1	ENST00000298358	human	ensembl	74_37	-1	known	missense	c.717	p.E239D	0.021	NULL	NULL	-	no_errors	NOXRED1	HGNC	ENSG00000165555				97	0	0	52	33	38.8235
SNW1	0	genome.wustl.edu	37	14	78198843	78198843	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	78198843	78198843	G	T	SNP	SNW1	ENST00000261531	human	ensembl	74_37	-1	known	nonsense	c.876	p.Y292*	1.000	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	pfam_SKI-int_prot_SKIP_SNW-dom,superfamily_Signal_recog_particl_SRP54_hlx	-	no_errors	SNW1	HGNC	ENSG00000100603				114	0	0	72	30	29.4118
NRXN3	0	genome.wustl.edu	37	14	78709752	78709752	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	78709752	78709752	G	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.316	p.D106Y	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				19	0	0	5	7	58.3333
NRXN3	0	genome.wustl.edu	37	14	79454449	79454449	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	79454449	79454449	C	A	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.3194	p.S1065Y	1.000	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				132	0	0	81	35	30.1724
CEP128	0	genome.wustl.edu	37	14	81259399	81259399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	81259399	81259399	C	T	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.1265	p.R422Q	0.996	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				120	0	0	67	29	30.2083
TSHR	0	genome.wustl.edu	37	14	81606118	81606118	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	81606118	81606118	T	C	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	missense	c.788	p.L263P	1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409				80	0	0	50	24	32.4324
FLRT2	0	genome.wustl.edu	37	14	86088405	86088405	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	86088405	86088405	C	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.547	p.Q183K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				100	1	0.990099	44	21	32.3077
GALC	0	genome.wustl.edu	37	14	88416242	88416242	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	88416242	88416242	T	C	SNP	GALC	ENST00000261304	human	ensembl	74_37	-1	known	missense	c.1285	p.K429E	1.000	pfam_Glyco_hydro_59	pfam_Glyco_hydro_59,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_59	-	no_errors	GALC	HGNC	ENSG00000054983				92	0	0	71	32	31.068
PTPN21	0	genome.wustl.edu	37	14	88945316	88945316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	88945316	88945316	G	A	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	missense	c.2459	p.S820L	0.998	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				119	0	0	67	35	34.3137
EML5	0	genome.wustl.edu	37	14	89087177	89087177	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	89087177	89087177	C	A	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	nonsense	c.5296	p.E1766*	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				16	0	0	13	6	31.5789
TDP1	0	genome.wustl.edu	37	14	90429695	90429695	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	90429695	90429695	C	T	SNP	TDP1	ENST00000335725	human	ensembl	74_37	+1	known	silent	c.237	p.S79	0.000	NULL	pfam_Tyr-DNA_phospho	-	no_errors	TDP1	HGNC	ENSG00000042088				157	0	0	103	43	29.4521
KCNK13	0	genome.wustl.edu	37	14	90651298	90651298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	90651298	90651298	C	T	SNP	KCNK13	ENST00000282146	human	ensembl	74_37	+1	known	missense	c.1178	p.A393V	1.000	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_THIK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK13	HGNC	ENSG00000152315				43	0	0	23	10	30.303
CCDC88C	0	genome.wustl.edu	37	14	91760555	91760555	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	91760555	91760555	C	A	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.4074	p.E1358D	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				263	0	0	124	65	34.3915
CCDC88C	0	genome.wustl.edu	37	14	91779779	91779779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	91779779	91779779	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.2381	p.A794V	0.038	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				54	0	0	33	14	29.7872
CATSPERB	0	genome.wustl.edu	37	14	92088254	92088254	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	92088254	92088254	T	G	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.1958	p.D653A	0.670	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				43	0	0	26	17	39.5349
CATSPERB	0	genome.wustl.edu	37	14	92139258	92139258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	92139258	92139258	G	A	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.1081	p.L361F	1.000	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				154	0	0	117	55	31.9767
TRIP11	0	genome.wustl.edu	37	14	92491676	92491676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	92491676	92491676	C	T	SNP	TRIP11	ENST00000267622	human	ensembl	74_37	-1	known	missense	c.290	p.R97Q	0.883	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815				37	0	0	31	8	20.5128
ATXN3	0	genome.wustl.edu	37	14	92530710	92530710	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	92530710	92530710	G	T	SNP	ATXN3	ENST00000545170	human	ensembl	74_37	-1	known	missense	c.1067	p.S356Y	1.000	pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Josephin,pfscan_Ubiquitin-int_motif,prints_Josephin	-	no_errors	ATXN3	HGNC	ENSG00000066427				137	0	0	79	38	32.4786
GOLGA5	0	genome.wustl.edu	37	14	93263988	93263988	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93263988	93263988	A	C	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	missense	c.206	p.N69T	0.986	NULL	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				122	0	0	77	33	30
GOLGA5	0	genome.wustl.edu	37	14	93301978	93301978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93301978	93301978	C	T	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	missense	c.2020	p.R674C	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				58	0	0	33	10	23.2558
GOLGA5	0	genome.wustl.edu	37	14	93303754	93303754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93303754	93303754	G	A	SNP	GOLGA5	ENST00000163416	human	ensembl	74_37	+1	known	missense	c.2075	p.R692Q	1.000	pfam_Golgin_subfamily_A_member_5	pfam_Golgin_subfamily_A_member_5,superfamily_Prefoldin	-	no_errors	GOLGA5	HGNC	ENSG00000066455				257	0	0	192	83	30.1818
C14orf142	0	genome.wustl.edu	37	14	93673210	93673210	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93673210	93673210	T	C	SNP	C14orf142	ENST00000306954	human	ensembl	74_37	-1	known	missense	c.173	p.H58R	0.055	NULL	NULL	-	no_errors	C14orf142	HGNC	ENSG00000170270				67	0	0	40	21	34.4262
C14orf142	0	genome.wustl.edu	37	14	93673258	93673258	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93673258	93673258	T	C	SNP	C14orf142	ENST00000306954	human	ensembl	74_37	-1	known	missense	c.125	p.D42G	0.957	NULL	NULL	-	no_errors	C14orf142	HGNC	ENSG00000170270				124	0	0	43	34	44.1558
UBR7	0	genome.wustl.edu	37	14	93686640	93686640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	93686640	93686640	G	A	SNP	UBR7	ENST00000013070	human	ensembl	74_37	+1	known	missense	c.1006	p.D336N	1.000	NULL	pfam_Znf_N-recognin,superfamily_Znf_FYVE_PHD,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR7	HGNC	ENSG00000012963				136	0	0	96	40	29.4118
UNC79	0	genome.wustl.edu	37	14	94071295	94071295	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94071295	94071295	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.3808	p.E1270K	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				14	0	0	12	9	42.8571
UNC79	0	genome.wustl.edu	37	14	94088081	94088081	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94088081	94088081	C	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.4568	p.S1523Y	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				120	0	0	74	29	28.1553
FAM181A	0	genome.wustl.edu	37	14	94394942	94394942	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94394942	94394942	A	G	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	missense	c.497	p.Y166C	0.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				82	0	0	30	10	25
ASB2	0	genome.wustl.edu	37	14	94405676	94405676	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94405676	94405676	C	T	SNP	ASB2	ENST00000315988	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.998	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628				89	0	0	45	18	28.5714
LINC00521	0	genome.wustl.edu	37	14	94464410	94464410	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94464410	94464410	C	T	SNP	LINC00521	ENST00000314629	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00521	HGNC	ENSG00000175699				28	0	0	20	10	33.3333
SERPINA11	0	genome.wustl.edu	37	14	94914614	94914614	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94914614	94914614	A	C	SNP	SERPINA11	ENST00000334708	human	ensembl	74_37	-1	known	missense	c.498	p.F166L	0.290	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910				285	0	0	113	71	38.587
SERPINA9	0	genome.wustl.edu	37	14	94929505	94929505	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94929505	94929505	G	A	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	silent	c.1233	p.F411	0.952	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				165	0	0	63	44	41.1215
ENSG00000256357	0	genome.wustl.edu	37	14	94930904	94930904	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94930904	94930904	G	T	SNP	ENSG00000256357	ENST00000536735	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-349I1.2	Clone_based_vega_gene	ENSG00000256357				9	0	0	5	5	50
SERPINA12	0	genome.wustl.edu	37	14	94964562	94964562	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	94964562	94964562	T	G	SNP	SERPINA12	ENST00000341228	human	ensembl	74_37	-1	known	missense	c.173	p.K58T	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953				237	0	0	104	73	41.2429
SERPINA4	0	genome.wustl.edu	37	14	95033396	95033396	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	95033396	95033396	C	T	SNP	SERPINA4	ENST00000298841	human	ensembl	74_37	+1	known	silent	c.739	p.L247	0.002	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA4	HGNC	ENSG00000100665				94	0	0	57	20	25.974
CLMN	0	genome.wustl.edu	37	14	95660901	95660901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	95660901	95660901	C	T	SNP	CLMN	ENST00000298912	human	ensembl	74_37	-1	known	missense	c.2741	p.R914Q	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	CLMN	HGNC	ENSG00000165959				127	0	0	50	21	29.5775
SYNE3	0	genome.wustl.edu	37	14	95903210	95903210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	95903210	95903210	C	T	SNP	SYNE3	ENST00000334258	human	ensembl	74_37	-1	known	missense	c.2485	p.A829T	0.455	NULL	pfam_KASH,pfam_Spectrin_repeat,superfamily_Retrov_capsid_C,smart_Spectrin/alpha-actinin,pfscan_KASH	-	no_errors	SYNE3	HGNC	ENSG00000176438				153	0	0	63	37	37
GLRX5	0	genome.wustl.edu	37	14	96010292	96010292	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	96010292	96010292	G	T	SNP	GLRX5	ENST00000331334	human	ensembl	74_37	+1	known	missense	c.304	p.D102Y	1.000	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX5	HGNC	ENSG00000182512				121	0	0	115	15	11.5385
BDKRB1	0	genome.wustl.edu	37	14	96730670	96730670	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	96730670	96730670	G	A	SNP	BDKRB1	ENST00000216629	human	ensembl	74_37	+1	known	silent	c.651	p.A217	0.156	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Brdyknn_1_rcpt,prints_GPCR_Rhodpsn,prints_Brdyknn_rcpt	-	no_errors	BDKRB1	HGNC	ENSG00000100739				104	0	0	64	28	30.4348
BDKRB1	0	genome.wustl.edu	37	14	96731182	96731182	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	96731182	96731182	T	C	SNP	BDKRB1	ENST00000557122	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	BDKRB1	HGNC	ENSG00000100739				26	0	0	17	9	34.6154
ATG2B	0	genome.wustl.edu	37	14	96788731	96788731	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	96788731	96788731	G	T	SNP	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.104	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739				17	0	0	8	6	42.8571
PAPOLA	0	genome.wustl.edu	37	14	97010496	97010496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	14	97010496	97010496	C	T	SNP	PAPOLA	ENST00000216277	human	ensembl	74_37	+1	known	missense	c.1300	p.R434C	1.000	pfam_PolA_pol_RNA-bd_dom,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060				71	0	0	51	27	34.6154
ADAMTS17	0	genome.wustl.edu	37	15	100533305	100533305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	100533305	100533305	G	A	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.2897	p.A966V	0.001	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				122	0	0	74	28	27.451
ADAMTS17	0	genome.wustl.edu	37	15	100672288	100672288	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	100672288	100672288	A	G	SNP	ADAMTS17	ENST00000268070	human	ensembl	74_37	-1	known	missense	c.1645	p.W549R	0.998	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS17	HGNC	ENSG00000140470				50	0	0	34	11	24.4444
ALDH1A3	0	genome.wustl.edu	37	15	101432808	101432808	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	101432808	101432808	T	C	SNP	ALDH1A3	ENST00000329841	human	ensembl	74_37	+1	known	missense	c.439	p.W147R	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A3	HGNC	ENSG00000184254				154	0	0	77	33	30
CHSY1	0	genome.wustl.edu	37	15	101775542	101775542	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	101775542	101775542	A	C	SNP	CHSY1	ENST00000254190	human	ensembl	74_37	-1	known	missense	c.561	p.S187R	0.993	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY1	HGNC	ENSG00000131873				97	0	0	57	44	43.5644
DNM1P47	0	genome.wustl.edu	37	15	102300166	102300166	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	102300166	102300166	C	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.201	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				13	0	0	11	6	35.2941
OR4F6	0	genome.wustl.edu	37	15	102346172	102346172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	102346172	102346172	G	A	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	missense	c.250	p.D84N	0.041	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				350	0	0	217	93	30
OR4F6	0	genome.wustl.edu	37	15	102346599	102346599	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	102346599	102346599	A	C	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	missense	c.677	p.Q226P	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				125	0	0	90	39	30.2326
OR4F6	0	genome.wustl.edu	37	15	102346821	102346821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	102346821	102346821	G	T	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	missense	c.899	p.R300I	0.007	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140				48	0	0	24	5	17.2414
CHEK2P2	0	genome.wustl.edu	37	15	20490503	20490503	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	20490503	20490503	G	T	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				351	0	0	244	19	7.22433
CHEK2P2	0	genome.wustl.edu	37	15	20490520	20490520	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	20490520	20490520	G	A	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				428	0	0	307	42	12.0344
CHEK2P2	0	genome.wustl.edu	37	15	20496610	20496610	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	20496610	20496610	G	A	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.763	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				115	0	0	61	10	14.0845
HERC2P3	0	genome.wustl.edu	37	15	20642567	20642567	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	20642567	20642567	G	A	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				87	0	0	67	12	15.1899
HERC2P3	0	genome.wustl.edu	37	15	20663159	20663159	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	20663159	20663159	C	T	SNP	HERC2P3	ENST00000428453	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				36	0	0	18	14	43.75
OR4M2	0	genome.wustl.edu	37	15	22369069	22369069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	22369069	22369069	G	A	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	missense	c.494	p.R165Q	0.012	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				529	0	0	397	69	14.8069
OR4N4	0	genome.wustl.edu	37	15	22382966	22382966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	22382966	22382966	G	A	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	missense	c.494	p.R165H	0.058	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				222	0	0	130	33	20.2454
NIPA2	0	genome.wustl.edu	37	15	23014503	23014503	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	23014503	23014503	G	A	SNP	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	silent	c.222	p.F74	0.984	pfam_Mg_trans_NIPA,pfam_DMT	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				30	0	0	19	7	26.9231
GOLGA8I	0	genome.wustl.edu	37	15	23260833	23260833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	23260833	23260833	G	A	SNP	GOLGA8I	ENST00000450802	human	ensembl	74_37	+1	known	missense	c.614	p.G205D	0.001	NULL	NULL	-	no_errors	GOLGA8I	HGNC	ENSG00000153666				17	0	0	10	5	33.3333
ENSG00000259455	0	genome.wustl.edu	37	15	23412214	23412214	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	23412214	23412214	C	A	SNP	ENSG00000259455	ENST00000558241	human	ensembl	74_37	-1	novel	missense	c.243	p.K81N	0.037	NULL	superfamily_Ribosomal_L7/12_C/ClpS-like,prints_Tropomyosin	-	no_errors	RP11-467N20.5	Clone_based_vega_gene	ENSG00000259455				99	0	0	50	17	25.3731
SNRPN	0	genome.wustl.edu	37	15	25222096	25222096	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	25222096	25222096	G	T	SNP	SNRPN	ENST00000444203	human	ensembl	74_37	+1	known	missense	c.352	p.V118L	0.685	pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPN	HGNC	ENSG00000128739				111	0	0	54	24	30.7692
SNHG14	0	genome.wustl.edu	37	15	25226930	25226930	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	25226930	25226930	G	A	SNP	SNHG14	ENST00000551631	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				22	0	0	7	9	56.25
SNORD115-8	0	genome.wustl.edu	37	15	25429502	25429502	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	25429502	25429502	A	C	SNP	SNORD115-8	ENST00000363856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	SNORD115-8	HGNC	ENSG00000200726				455	0	0	303	43	12.4277
SNHG14	0	genome.wustl.edu	37	15	25490503	25490503	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	25490503	25490503	T	C	SNP	SNHG14	ENST00000453082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				80	0	0	40	24	37.5
ATP10A	0	genome.wustl.edu	37	15	25961884	25961884	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	25961884	25961884	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.1769	p.R590Q	0.994	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				168	0	0	79	39	33.0508
GABRB3	0	genome.wustl.edu	37	15	26866631	26866631	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	26866631	26866631	G	A	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	silent	c.291	p.L97	0.674	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAb_rcpt,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				116	0	0	68	28	29.1667
GABRA5	0	genome.wustl.edu	37	15	27114458	27114458	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	27114458	27114458	C	A	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	silent	c.63	p.S21	1.000	prints_GABBAa5_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				101	0	0	68	29	29.8969
GABRA5	0	genome.wustl.edu	37	15	27128679	27128679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	27128679	27128679	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	missense	c.472	p.D158N	0.993	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				40	0	0	14	16	53.3333
GABRG3	0	genome.wustl.edu	37	15	27222237	27222237	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	27222237	27222237	A	G	SNP	GABRG3	ENST00000333743	human	ensembl	74_37	+1	known	missense	c.142	p.T48A	1.000	superfamily_Neur_chan_lig-bd,prints_GABBAg_rcpt,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg3_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG3	HGNC	ENSG00000182256				104	0	0	72	41	36.2832
OCA2	0	genome.wustl.edu	37	15	28200318	28200318	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28200318	28200318	C	A	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	nonsense	c.1828	p.E610*	1.000	pfam_Cit_transptr-like_dom,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044				174	0	0	111	47	29.7468
HERC2	0	genome.wustl.edu	37	15	28377829	28377829	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28377829	28377829	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.12378	p.S4126	0.289	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				145	0	0	61	40	39.604
HERC2	0	genome.wustl.edu	37	15	28386977	28386977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28386977	28386977	G	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.11716	p.R3906C	0.915	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				218	0	0	148	80	35.0877
HERC2	0	genome.wustl.edu	37	15	28408287	28408287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28408287	28408287	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.10699	p.D3567N	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				138	0	0	71	29	29
HERC2	0	genome.wustl.edu	37	15	28446651	28446651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28446651	28446651	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.7667	p.D2556G	1.000	pfam_CPH_domain	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				100	1	0.990099	61	24	28.2353
HERC2	0	genome.wustl.edu	37	15	28459021	28459021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28459021	28459021	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.6653	p.R2218H	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				99	0	0	35	14	28.5714
HERC2	0	genome.wustl.edu	37	15	28501325	28501325	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28501325	28501325	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.2656	p.A886T	0.998	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				58	0	0	26	13	33.3333
HERC2	0	genome.wustl.edu	37	15	28538116	28538116	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28538116	28538116	C	A	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.240	p.E80D	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				80	0	0	45	21	31.8182
GOLGA8F	0	genome.wustl.edu	37	15	28629528	28629528	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28629528	28629528	G	T	SNP	GOLGA8F	ENST00000526619	human	ensembl	74_37	+1	known	nonsense	c.103	p.E35*	0.047	NULL	NULL	-	no_errors	GOLGA8F	HGNC	ENSG00000153684				77	0	0	36	14	28
GOLGA8M	0	genome.wustl.edu	37	15	28950341	28950341	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28950341	28950341	C	T	SNP	GOLGA8M	ENST00000340249	human	ensembl	74_37	-1	known	silent	c.921	p.E307	1.000	NULL	NULL	-	no_errors	GOLGA8M	HGNC	ENSG00000188626				30	0	0	28	9	24.3243
WHAMMP2	0	genome.wustl.edu	37	15	28986334	28986334	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28986334	28986334	G	T	SNP	WHAMMP2	ENST00000508764	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334				21	0	0	11	5	31.25
WHAMMP2	0	genome.wustl.edu	37	15	28999647	28999647	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	28999647	28999647	G	A	SNP	WHAMMP2	ENST00000508764	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.905	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334				123	0	0	77	30	28.0374
GOLGA6L7P	0	genome.wustl.edu	37	15	29092258	29092258	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	29092258	29092258	G	A	SNP	GOLGA6L7P	ENST00000569815	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.060	-	-	-	no_errors	GOLGA6L7P	HGNC	ENSG00000261649				19	0	0	7	9	56.25
APBA2	0	genome.wustl.edu	37	15	29406145	29406145	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	29406145	29406145	G	A	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	missense	c.2104	p.E702K	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053				126	0	0	61	28	31.4607
ENSG00000252868	0	genome.wustl.edu	37	15	29526117	29526117	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	29526117	29526117	G	A	SNP	ENSG00000252868	ENST00000517059	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.992	-	-	-	no_errors	snoZ278	RFAM	ENSG00000252868				41	0	0	22	17	43.5897
TJP1	0	genome.wustl.edu	37	15	30008950	30008950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	30008950	30008950	C	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.4067	p.R1356Q	1.000	NULL	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				83	0	0	66	20	23.2558
TJP1	0	genome.wustl.edu	37	15	30034875	30034875	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	30034875	30034875	C	A	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.1121	p.R374I	0.980	prints_ZonOcculS1	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				144	0	0	81	42	34.1463
GOLGA8Q	0	genome.wustl.edu	37	15	30846001	30846001	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	30846001	30846001	G	T	SNP	GOLGA8Q	ENST00000562783	human	ensembl	74_37	+1	known	nonsense	c.55	p.E19*	0.013	NULL	NULL	-	no_errors	GOLGA8Q	HGNC	ENSG00000178115				10	0	0	2	4	66.6667
TRPM1	0	genome.wustl.edu	37	15	31294611	31294611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	31294611	31294611	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.4343	p.G1448D	0.998	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				174	0	0	89	47	34.5588
TRPM1	0	genome.wustl.edu	37	15	31319267	31319267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	31319267	31319267	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.3398	p.R1133Q	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				92	0	0	59	29	32.9545
TRPM1	0	genome.wustl.edu	37	15	31339355	31339355	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	31339355	31339355	T	G	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.1774	p.N592H	0.834	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				134	0	0	100	11	9.90991
TRPM1	0	genome.wustl.edu	37	15	31352771	31352771	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	31352771	31352771	G	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	silent	c.1290	p.I430	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				49	0	0	25	13	34.2105
CHRNA7	0	genome.wustl.edu	37	15	32449835	32449835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	32449835	32449835	G	A	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	missense	c.544	p.D182N	0.996	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				83	0	0	25	33	56.8966
ARHGAP11A	0	genome.wustl.edu	37	15	32916429	32916429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	32916429	32916429	C	T	SNP	ARHGAP11A	ENST00000361627	human	ensembl	74_37	+1	known	missense	c.353	p.A118V	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP11A	HGNC	ENSG00000198826				63	0	0	48	25	34.2466
FMN1	0	genome.wustl.edu	37	15	33194156	33194156	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	33194156	33194156	T	G	SNP	FMN1	ENST00000334528	human	ensembl	74_37	-1	known	missense	c.2794	p.T932P	0.972	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin,prints_Formin_Cappuccino_subfam	-	no_errors	FMN1	HGNC	ENSG00000248905				64	0	0	50	18	26.4706
RYR3	0	genome.wustl.edu	37	15	33831637	33831637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	33831637	33831637	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.520	p.V174I	1.000	pfam_Ins145_P3_rcpt,superfamily_MIR_motif,smart_MIR_motif,prints_Ryan_recept,pfscan_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				20	0	0	12	5	29.4118
RYR3	0	genome.wustl.edu	37	15	33905384	33905384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	33905384	33905384	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.2165	p.G722D	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				37	0	0	13	6	31.5789
RYR3	0	genome.wustl.edu	37	15	33920748	33920748	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	33920748	33920748	A	C	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.2651	p.K884T	1.000	pfam_Ryanodine_rcpt,prints_Ryan_recept	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				71	0	0	42	21	33.3333
RYR3	0	genome.wustl.edu	37	15	34113011	34113011	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34113011	34113011	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.10813	p.E3605K	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				14	0	0	11	5	31.25
RYR3	0	genome.wustl.edu	37	15	34130137	34130137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34130137	34130137	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.11956	p.P3986S	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				179	0	0	106	41	27.8912
RYR3	0	genome.wustl.edu	37	15	34146651	34146651	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34146651	34146651	G	A	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	splice_site	c.13860+1	e97+1	1.000	-	-	-	no_errors	RYR3	HGNC	ENSG00000198838				12	0	0	5	3	37.5
KATNBL1	0	genome.wustl.edu	37	15	34445233	34445233	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34445233	34445233	G	A	SNP	KATNBL1	ENST00000256544	human	ensembl	74_37	-1	known	missense	c.196	p.R66C	0.076	NULL	NULL	-	no_errors	KATNBL1	HGNC	ENSG00000134152				114	0	0	86	45	34.3511
SLC12A6	0	genome.wustl.edu	37	15	34628879	34628879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34628879	34628879	C	T	SNP	SLC12A6	ENST00000397707	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199				82	0	0	44	19	30.1587
GOLGA8A	0	genome.wustl.edu	37	15	34678852	34678852	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	34678852	34678852	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	74_37	-1	known	nonsense	c.349	p.R117*	0.998	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265				123	0	0	88	17	16.1905
AQR	0	genome.wustl.edu	37	15	35236561	35236561	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	35236561	35236561	T	G	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.399	p.E133D	0.996	NULL	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776				231	0	0	196	87	30.742
CSNK1A1P1	0	genome.wustl.edu	37	15	37110228	37110228	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	37110228	37110228	T	G	SNP	CSNK1A1P1	ENST00000430593	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CSNK1A1P1	HGNC	ENSG00000223518				64	0	0	20	22	52.381
SPRED1	0	genome.wustl.edu	37	15	38617009	38617009	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	38617009	38617009	A	C	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	missense	c.422	p.Q141P	1.000	NULL	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				21	0	0	19	12	38.7097
C15orf54	0	genome.wustl.edu	37	15	39544598	39544598	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	39544598	39544598	T	C	SNP	C15orf54	ENST00000318578	human	ensembl	74_37	+1	known	missense	c.262	p.S88P	0.913	NULL	NULL	-	no_errors	C15orf54	HGNC	ENSG00000175746				258	0	0	96	54	36
THBS1	0	genome.wustl.edu	37	15	39882122	39882122	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	39882122	39882122	C	T	SNP	THBS1	ENST00000260356	human	ensembl	74_37	+1	known	silent	c.2043	p.G681	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS1	HGNC	ENSG00000137801				74	0	0	31	14	31.1111
FSIP1	0	genome.wustl.edu	37	15	40057945	40057945	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40057945	40057945	C	A	SNP	FSIP1	ENST00000350221	human	ensembl	74_37	-1	known	nonsense	c.313	p.E105*	0.054	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667				14	0	0	29	5	14.7059
EIF2AK4	0	genome.wustl.edu	37	15	40280268	40280268	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40280268	40280268	C	T	SNP	EIF2AK4	ENST00000263791	human	ensembl	74_37	+1	known	nonsense	c.2488	p.R830*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RWD-domain,superfamily_Kinase-like_dom,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Anticodon-bd,smart_RWD-domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_GCN2,pfscan_RWD-domain,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK4	HGNC	ENSG00000128829				119	0	0	100	31	23.6641
BUB1B	0	genome.wustl.edu	37	15	40462836	40462836	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40462836	40462836	A	C	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	missense	c.380	p.K127T	0.696	pfam_Mad3_BUB1_I,smart_Mad3_BUB1_I	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				79	0	0	60	22	26.8293
BUB1B	0	genome.wustl.edu	37	15	40504751	40504751	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40504751	40504751	G	T	SNP	BUB1B	ENST00000412359	human	ensembl	74_37	+1	known	nonsense	c.2479	p.E827*	1.000	superfamily_Kinase-like_dom	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I	-	no_errors	BUB1B	HGNC	ENSG00000156970				73	0	0	43	26	37.6812
PAK6	0	genome.wustl.edu	37	15	40564537	40564537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40564537	40564537	C	T	SNP	PAK6	ENST00000260404	human	ensembl	74_37	+1	known	missense	c.971	p.S324L	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK6	HGNC	ENSG00000137843				177	0	0	70	35	33.3333
KNSTRN	0	genome.wustl.edu	37	15	40684192	40684192	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40684192	40684192	G	A	SNP	KNSTRN	ENST00000249776	human	ensembl	74_37	+1	known	missense	c.790	p.E264K	0.995	NULL	NULL	-	no_errors	KNSTRN	HGNC	ENSG00000128944				169	0	0	107	49	31.4103
CASC5	0	genome.wustl.edu	37	15	40913959	40913959	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40913959	40913959	T	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.1575	p.F525L	0.201	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				72	0	0	53	25	32.0513
CASC5	0	genome.wustl.edu	37	15	40914552	40914552	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40914552	40914552	C	A	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.2168	p.S723Y	0.293	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				84	0	0	40	16	28.5714
CASC5	0	genome.wustl.edu	37	15	40916289	40916289	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	40916289	40916289	A	G	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.3905	p.Q1302R	0.001	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				140	0	0	99	38	27.7372
RMDN3	0	genome.wustl.edu	37	15	41043667	41043667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	41043667	41043667	C	T	SNP	RMDN3	ENST00000260385	human	ensembl	74_37	-1	known	missense	c.481	p.A161T	0.981	NULL	NULL	-	no_errors	RMDN3	HGNC	ENSG00000137824				214	0	0	117	61	34.2697
INO80	0	genome.wustl.edu	37	15	41387799	41387799	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	41387799	41387799	C	T	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	silent	c.381	p.K127	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908				71	0	0	41	26	38.806
LTK	0	genome.wustl.edu	37	15	41797252	41797252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	41797252	41797252	C	T	SNP	LTK	ENST00000263800	human	ensembl	74_37	-1	known	missense	c.1936	p.A646T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524				50	0	0	17	9	34.6154
MGA	0	genome.wustl.edu	37	15	42021440	42021440	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	42021440	42021440	C	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	nonsense	c.3736	p.R1246*	0.999	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197				38	0	0	29	13	30.9524
PLA2G4F	0	genome.wustl.edu	37	15	42442027	42442027	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	42442027	42442027	G	A	SNP	PLA2G4F	ENST00000397272	human	ensembl	74_37	-1	known	missense	c.943	p.R315C	1.000	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				112	0	0	46	18	28.125
PLA2G4F	0	genome.wustl.edu	37	15	42442820	42442820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	42442820	42442820	G	A	SNP	PLA2G4F	ENST00000569985	human	ensembl	74_37	-1	known	missense	c.692	p.A231V	0.391	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	PLA2G4F	HGNC	ENSG00000168907				27	0	0	19	9	32.1429
TTBK2	0	genome.wustl.edu	37	15	43044235	43044235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43044235	43044235	G	A	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	missense	c.3209	p.S1070L	0.978	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				221	0	0	112	56	33.3333
TTBK2	0	genome.wustl.edu	37	15	43044613	43044613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43044613	43044613	C	T	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	missense	c.2831	p.R944Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				162	0	0	100	41	29.078
EPB42	0	genome.wustl.edu	37	15	43508531	43508531	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43508531	43508531	T	C	SNP	EPB42	ENST00000300215	human	ensembl	74_37	-1	known	missense	c.221	p.Y74C	0.639	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	EPB42	HGNC	ENSG00000166947				109	0	0	53	30	36.1446
TGM7	0	genome.wustl.edu	37	15	43584953	43584953	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43584953	43584953	A	C	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	silent	c.393	p.T131	0.002	superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495				250	0	0	125	73	36.8687
LCMT2	0	genome.wustl.edu	37	15	43620802	43620802	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43620802	43620802	A	C	SNP	LCMT2	ENST00000305641	human	ensembl	74_37	-1	known	missense	c.1886	p.I629S	1.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806				133	0	0	76	31	28.972
CKMT1A	0	genome.wustl.edu	37	15	43988539	43988539	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	43988539	43988539	G	T	SNP	CKMT1A	ENST00000413453	human	ensembl	74_37	+1	known	missense	c.854	p.R285I	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT1A	HGNC	ENSG00000223572				174	0	0	94	23	19.6581
CATSPER2P1	0	genome.wustl.edu	37	15	44036490	44036490	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	44036490	44036490	A	C	SNP	CATSPER2P1	ENST00000429276	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771				47	0	0	25	14	35.8974
CTDSPL2	0	genome.wustl.edu	37	15	44811443	44811443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	44811443	44811443	C	A	SNP	CTDSPL2	ENST00000260327	human	ensembl	74_37	+1	known	missense	c.1189	p.L397I	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSPL2	HGNC	ENSG00000137770				85	0	0	41	27	39.7059
SPG11	0	genome.wustl.edu	37	15	44944095	44944095	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	44944095	44944095	C	T	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	silent	c.1050	p.K350	0.950	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				68	0	0	30	21	41.1765
TRIM69	0	genome.wustl.edu	37	15	45059668	45059668	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45059668	45059668	C	A	SNP	TRIM69	ENST00000329464	human	ensembl	74_37	+1	known	silent	c.1201	p.R401	0.997	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_RING	-	no_errors	TRIM69	HGNC	ENSG00000185880				127	1	0.78125	71	36	33.6449
SORD	0	genome.wustl.edu	37	15	45365719	45365719	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45365719	45365719	G	T	SNP	SORD	ENST00000267814	human	ensembl	74_37	+1	known	missense	c.1065	p.Q355H	1.000	NULL	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	SORD	HGNC	ENSG00000140263				81	0	0	34	17	33.3333
DUOX1	0	genome.wustl.edu	37	15	45428767	45428767	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45428767	45428767	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.966	p.F322	0.971	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				159	0	0	79	39	33.0508
DUOX1	0	genome.wustl.edu	37	15	45443388	45443388	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45443388	45443388	C	T	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	silent	c.2956	p.L986	0.925	NULL	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				162	0	0	75	46	38.0165
GATM	0	genome.wustl.edu	37	15	45656125	45656125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45656125	45656125	G	A	SNP	GATM	ENST00000396659	human	ensembl	74_37	-1	known	missense	c.1132	p.P378S	1.000	NULL	NULL	-	no_errors	GATM	HGNC	ENSG00000171766				70	0	0	42	28	40
SPATA5L1	0	genome.wustl.edu	37	15	45707949	45707949	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45707949	45707949	G	T	SNP	SPATA5L1	ENST00000305560	human	ensembl	74_37	+1	known	missense	c.1809	p.E603D	1.000	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	SPATA5L1	HGNC	ENSG00000171763				59	0	0	31	13	29.5455
ENSG00000259342	0	genome.wustl.edu	37	15	45722962	45722962	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45722962	45722962	T	G	SNP	ENSG00000259342	ENST00000559553	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.344	-	-	-	no_errors	RP11-519G16.5	Clone_based_vega_gene	ENSG00000259342				30	0	0	18	5	21.7391
SQRDL	0	genome.wustl.edu	37	15	45983200	45983200	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45983200	45983200	G	A	SNP	SQRDL	ENST00000260324	human	ensembl	74_37	+1	known	missense	c.1325	p.R442H	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	SQRDL	HGNC	ENSG00000137767				299	0	0	154	52	25.2427
SEMA6D	0	genome.wustl.edu	37	15	48053386	48053386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	48053386	48053386	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	missense	c.314	p.R105Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				54	0	0	44	19	30.1587
SLC12A1	0	genome.wustl.edu	37	15	48580336	48580336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	48580336	48580336	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.2726	p.G909D	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				27	0	0	9	11	55
FBN1	0	genome.wustl.edu	37	15	48703309	48703309	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	48703309	48703309	T	G	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.8494	p.S2832R	1.000	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				102	0	0	69	24	25.8065
FBN1	0	genome.wustl.edu	37	15	48703477	48703477	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	48703477	48703477	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	nonsense	c.8326	p.R2776*	1.000	pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				204	0	0	95	51	34.9315
FBN1	0	genome.wustl.edu	37	15	48776091	48776091	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	48776091	48776091	G	A	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	silent	c.3762	p.C1254	0.998	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				92	0	0	55	22	28.5714
COPS2	0	genome.wustl.edu	37	15	49436464	49436464	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	49436464	49436464	A	C	SNP	COPS2	ENST00000299259	human	ensembl	74_37	-1	known	missense	c.206	p.F69C	1.000	NULL	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	COPS2	HGNC	ENSG00000166200				59	0	0	52	22	29.7297
FAM227B	0	genome.wustl.edu	37	15	49663591	49663591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	49663591	49663591	C	T	SNP	FAM227B	ENST00000299338	human	ensembl	74_37	-1	known	missense	c.1018	p.D340N	0.020	NULL	NULL	-	no_errors	FAM227B	HGNC	ENSG00000166262				130	0	0	93	61	39.6104
FGF7	0	genome.wustl.edu	37	15	49716732	49716732	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	49716732	49716732	G	A	SNP	FGF7	ENST00000267843	human	ensembl	74_37	+1	known	missense	c.238	p.D80N	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF7	HGNC	ENSG00000140285				83	0	0	47	26	35.6164
FAM227B	0	genome.wustl.edu	37	15	49869835	49869835	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	49869835	49869835	C	A	SNP	FAM227B	ENST00000299338	human	ensembl	74_37	-1	known	missense	c.432	p.K144N	1.000	NULL	NULL	-	no_errors	FAM227B	HGNC	ENSG00000166262				24	0	0	16	14	46.6667
SLC27A2	0	genome.wustl.edu	37	15	50489750	50489750	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	50489750	50489750	T	C	SNP	SLC27A2	ENST00000267842	human	ensembl	74_37	+1	known	missense	c.532	p.S178P	0.065	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A2	HGNC	ENSG00000140284				87	0	0	66	24	26.6667
USP50	0	genome.wustl.edu	37	15	50838687	50838687	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	50838687	50838687	G	A	SNP	USP50	ENST00000532404	human	ensembl	74_37	-1	known	silent	c.36	p.F12	0.962	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP50	HGNC	ENSG00000170236				113	0	0	71	41	36.6071
TRPM7	0	genome.wustl.edu	37	15	50853889	50853889	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	50853889	50853889	G	A	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.5584	p.R1862C	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				66	0	0	34	17	33.3333
TRPM7	0	genome.wustl.edu	37	15	50878618	50878618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	50878618	50878618	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.4457	p.R1486K	0.910	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				55	0	0	19	15	44.1176
TRPM7	0	genome.wustl.edu	37	15	50906354	50906354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	50906354	50906354	C	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.1601	p.R534Q	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439				70	0	0	62	28	31.1111
DMXL2	0	genome.wustl.edu	37	15	51763435	51763435	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	51763435	51763435	A	C	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.7377	p.D2459E	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				127	0	0	69	30	30.303
DMXL2	0	genome.wustl.edu	37	15	51791197	51791197	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	51791197	51791197	T	G	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.4224	p.E1408D	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				275	0	0	194	89	31.4488
DMXL2	0	genome.wustl.edu	37	15	51828437	51828437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	51828437	51828437	C	T	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.2240	p.R747Q	1.000	smart_WD40_repeat	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093				195	0	0	138	76	35.514
TMOD2	0	genome.wustl.edu	37	15	52069169	52069169	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	52069169	52069169	C	T	SNP	TMOD2	ENST00000249700	human	ensembl	74_37	+1	known	silent	c.447	p.F149	0.992	NULL	pfam_Tropomodulin	-	no_errors	TMOD2	HGNC	ENSG00000128872				78	0	0	42	21	33.3333
TMOD3	0	genome.wustl.edu	37	15	52161468	52161468	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	52161468	52161468	A	G	SNP	TMOD3	ENST00000308580	human	ensembl	74_37	+1	known	missense	c.181	p.T61A	1.000	pfam_Tropomodulin	pfam_Tropomodulin	-	no_errors	TMOD3	HGNC	ENSG00000138594				118	0	0	67	29	30.2083
MYO5C	0	genome.wustl.edu	37	15	52539151	52539151	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	52539151	52539151	G	A	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	nonsense	c.1942	p.R648*	0.998	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				138	0	0	72	23	24.2105
WDR72	0	genome.wustl.edu	37	15	53991950	53991950	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	53991950	53991950	T	C	SNP	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	missense	c.1762	p.T588A	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				140	0	0	84	48	36.3636
UNC13C	0	genome.wustl.edu	37	15	54306969	54306969	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	54306969	54306969	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.1869	p.E623	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				188	0	0	93	38	29.0076
UNC13C	0	genome.wustl.edu	37	15	54307519	54307519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	54307519	54307519	G	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.2419	p.A807T	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				58	0	0	27	19	41.3043
UNC13C	0	genome.wustl.edu	37	15	54556537	54556537	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	54556537	54556537	C	T	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.3620	p.A1207V	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				15	0	0	13	6	31.5789
UNC13C	0	genome.wustl.edu	37	15	54707232	54707232	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	54707232	54707232	C	A	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.4900	p.L1634I	1.000	pfam_Ca-dep_secretion_activator	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				35	0	0	30	11	26.8293
UNC13C	0	genome.wustl.edu	37	15	54914612	54914612	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	54914612	54914612	T	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.6194	p.V2065A	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				85	0	0	43	20	31.746
CCPG1	0	genome.wustl.edu	37	15	55651945	55651945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55651945	55651945	C	T	SNP	CCPG1	ENST00000310958	human	ensembl	74_37	-1	known	missense	c.2026	p.E676K	1.000	NULL	NULL	-	no_errors	CCPG1	HGNC	ENSG00000260916				57	0	0	45	23	33.8235
DYX1C1	0	genome.wustl.edu	37	15	55759140	55759140	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55759140	55759140	G	T	SNP	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	missense	c.625	p.L209I	0.632	NULL	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				56	0	0	57	18	24
PYGO1	0	genome.wustl.edu	37	15	55839078	55839078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55839078	55839078	G	A	SNP	PYGO1	ENST00000302000	human	ensembl	74_37	-1	known	missense	c.403	p.P135S	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO1	HGNC	ENSG00000171016				123	0	0	68	43	38.7387
PRTG	0	genome.wustl.edu	37	15	55930813	55930813	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55930813	55930813	G	A	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	nonsense	c.2386	p.R796*	0.997	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				54	0	0	30	13	30.2326
PRTG	0	genome.wustl.edu	37	15	55965788	55965788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55965788	55965788	G	A	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	missense	c.1633	p.R545W	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				192	0	0	108	39	26.5306
ENSG00000259180	0	genome.wustl.edu	37	15	55972617	55972617	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55972617	55972617	A	C	SNP	ENSG00000259180	ENST00000561155	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-420M1.2	Clone_based_vega_gene	ENSG00000259180				32	0	0	38	14	26.9231
PRTG	0	genome.wustl.edu	37	15	55974623	55974623	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	55974623	55974623	A	T	SNP	PRTG	ENST00000389286	human	ensembl	74_37	-1	known	nonsense	c.615	p.C205*	0.923	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	PRTG	HGNC	ENSG00000166450				82	0	0	56	33	37.0787
NEDD4	0	genome.wustl.edu	37	15	56132713	56132713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	56132713	56132713	A	C	SNP	NEDD4	ENST00000508342	human	ensembl	74_37	-1	known	missense	c.3220	p.F1074V	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	NEDD4	HGNC	ENSG00000069869				60	0	0	43	24	35.8209
NEDD4	0	genome.wustl.edu	37	15	56208417	56208417	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	56208417	56208417	T	G	SNP	NEDD4	ENST00000508342	human	ensembl	74_37	-1	known	missense	c.613	p.N205H	0.990	NULL	pfam_HECT,pfam_WW_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_WW_dom	-	no_errors	NEDD4	HGNC	ENSG00000069869				108	0	0	55	34	38.2022
RFX7	0	genome.wustl.edu	37	15	56388113	56388113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	56388113	56388113	G	A	SNP	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	missense	c.1813	p.R605C	0.983	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				45	0	0	23	10	30.303
ZNF280D	0	genome.wustl.edu	37	15	56981268	56981268	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	56981268	56981268	G	T	SNP	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	missense	c.751	p.L251I	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				70	0	0	66	18	21.4286
ZNF280D	0	genome.wustl.edu	37	15	56981585	56981585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	56981585	56981585	C	T	SNP	ZNF280D	ENST00000267807	human	ensembl	74_37	-1	known	missense	c.583	p.E195K	0.133	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871				55	0	0	34	27	44.2623
CGNL1	0	genome.wustl.edu	37	15	57730212	57730212	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	57730212	57730212	C	T	SNP	CGNL1	ENST00000281282	human	ensembl	74_37	+1	known	silent	c.15	p.F5	0.945	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849				446	1	0.223714	257	158	38.0723
ALDH1A2	0	genome.wustl.edu	37	15	58253409	58253409	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	58253409	58253409	G	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	silent	c.1335	p.L445	0.086	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				74	0	0	51	20	28.169
ALDH1A2	0	genome.wustl.edu	37	15	58284967	58284967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	58284967	58284967	G	A	SNP	ALDH1A2	ENST00000249750	human	ensembl	74_37	-1	known	missense	c.734	p.T245M	0.998	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH1A2	HGNC	ENSG00000128918				143	0	0	87	36	29.2683
RNF111	0	genome.wustl.edu	37	15	59347967	59347967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59347967	59347967	G	A	SNP	RNF111	ENST00000434298	human	ensembl	74_37	+1	known	missense	c.1094	p.R365H	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF111	HGNC	ENSG00000157450				48	0	0	28	14	33.3333
RNF111	0	genome.wustl.edu	37	15	59387260	59387260	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59387260	59387260	T	C	SNP	RNF111	ENST00000560080	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNF111	HGNC	ENSG00000157450				44	0	0	15	9	37.5
LDHAL6B	0	genome.wustl.edu	37	15	59499489	59499489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59499489	59499489	G	A	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	missense	c.350	p.G117D	0.994	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				191	0	0	107	36	25.1748
LDHAL6B	0	genome.wustl.edu	37	15	59499969	59499969	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59499969	59499969	A	G	SNP	LDHAL6B	ENST00000307144	human	ensembl	74_37	+1	known	missense	c.830	p.K277R	1.000	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHAL6B	HGNC	ENSG00000171989				67	0	0	44	31	41.3333
MYO1E	0	genome.wustl.edu	37	15	59501008	59501008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59501008	59501008	C	T	SNP	MYO1E	ENST00000288235	human	ensembl	74_37	-1	known	missense	c.1402	p.A468T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483				131	0	0	62	32	34.0426
FAM81A	0	genome.wustl.edu	37	15	59752247	59752247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	59752247	59752247	G	A	SNP	FAM81A	ENST00000288228	human	ensembl	74_37	+1	known	missense	c.136	p.A46T	0.957	NULL	superfamily_Ferritin-like_SF	-	no_errors	FAM81A	HGNC	ENSG00000157470				65	0	0	47	23	32.8571
RORA	0	genome.wustl.edu	37	15	60803545	60803545	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	60803545	60803545	G	T	SNP	RORA	ENST00000261523	human	ensembl	74_37	-1	known	missense	c.799	p.L267I	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt	-	no_errors	RORA	HGNC	ENSG00000069667				114	0	0	53	35	39.7727
VPS13C	0	genome.wustl.edu	37	15	62146720	62146720	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62146720	62146720	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.11198	p.R3733K	0.990	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				267	0	0	141	71	33.4906
VPS13C	0	genome.wustl.edu	37	15	62155716	62155716	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62155716	62155716	T	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.10875	p.K3625N	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				76	0	0	54	25	31.6456
VPS13C	0	genome.wustl.edu	37	15	62202485	62202485	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62202485	62202485	T	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.8735	p.E2912A	1.000	pfam_VPSAP_dom	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				82	0	0	49	21	30
VPS13C	0	genome.wustl.edu	37	15	62214690	62214690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62214690	62214690	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.6881	p.R2294Q	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				167	0	0	142	68	32.381
VPS13C	0	genome.wustl.edu	37	15	62243142	62243142	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62243142	62243142	A	G	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	splice_site	c.4536+2	e40+2	0.996	-	-	-	no_errors	VPS13C	HGNC	ENSG00000129003				32	0	0	23	16	41.0256
VPS13C	0	genome.wustl.edu	37	15	62325718	62325718	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62325718	62325718	C	A	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	nonsense	c.307	p.E103*	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				30	0	0	19	11	36.6667
VPS13C	0	genome.wustl.edu	37	15	62327210	62327210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	62327210	62327210	C	T	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.229	p.E77K	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003				103	0	0	80	31	27.9279
TLN2	0	genome.wustl.edu	37	15	63029190	63029190	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	63029190	63029190	C	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	nonsense	c.3472	p.R1158*	0.860	superfamily_Vinculin/catenin	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				83	0	0	31	15	32.6087
TPM1	0	genome.wustl.edu	37	15	63353934	63353934	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	63353934	63353934	G	T	SNP	TPM1	ENST00000267996	human	ensembl	74_37	+1	known	nonsense	c.586	p.E196*	1.000	pfam_Tropomyosin,prints_Tropomyosin	pfam_Tropomyosin,prints_Tropomyosin	-	no_errors	TPM1	HGNC	ENSG00000140416				85	0	0	43	21	32.8125
APH1B	0	genome.wustl.edu	37	15	63571506	63571506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	63571506	63571506	G	A	SNP	APH1B	ENST00000261879	human	ensembl	74_37	+1	known	missense	c.260	p.R87Q	1.000	pfam_Aph-1	pfam_Aph-1	-	no_errors	APH1B	HGNC	ENSG00000138613				99	0	0	56	23	29.1139
HERC1	0	genome.wustl.edu	37	15	63967065	63967065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	63967065	63967065	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.7322	p.R2441Q	0.955	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				172	0	0	94	51	35.1724
HERC1	0	genome.wustl.edu	37	15	63986349	63986349	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	63986349	63986349	C	T	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.5488	p.A1830T	1.000	superfamily_ARM-type_fold	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				18	0	0	14	7	33.3333
HERC1	0	genome.wustl.edu	37	15	64010809	64010809	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	64010809	64010809	T	G	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.3942	p.E1314D	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				14	0	0	10	5	33.3333
TRIP4	0	genome.wustl.edu	37	15	64687596	64687596	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	64687596	64687596	G	T	SNP	TRIP4	ENST00000261884	human	ensembl	74_37	+1	known	splice_site	c.272-1	e3-1	0.991	-	-	-	no_errors	TRIP4	HGNC	ENSG00000103671				44	0	0	24	17	41.4634
ZNF609	0	genome.wustl.edu	37	15	64966811	64966811	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	64966811	64966811	A	C	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.1758	p.K586N	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357				126	0	0	61	34	35.7895
ANKDD1A	0	genome.wustl.edu	37	15	65223053	65223053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65223053	65223053	C	T	SNP	ANKDD1A	ENST00000380230	human	ensembl	74_37	+1	known	missense	c.604	p.R202W	0.022	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,prints_Ankyrin_rpt	-	no_errors	ANKDD1A	HGNC	ENSG00000166839				49	0	0	19	14	42.4242
ANKDD1A	0	genome.wustl.edu	37	15	65226337	65226337	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65226337	65226337	A	C	SNP	ANKDD1A	ENST00000380230	human	ensembl	74_37	+1	known	missense	c.770	p.K257T	0.902	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,prints_Ankyrin_rpt	-	no_errors	ANKDD1A	HGNC	ENSG00000166839				104	0	0	71	28	28.2828
SPG21	0	genome.wustl.edu	37	15	65268842	65268842	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65268842	65268842	T	G	SNP	SPG21	ENST00000204566	human	ensembl	74_37	-1	known	missense	c.277	p.K93Q	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1	-	no_errors	SPG21	HGNC	ENSG00000090487				73	0	0	38	26	40.625
CLPX	0	genome.wustl.edu	37	15	65450097	65450097	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65450097	65450097	T	G	SNP	CLPX	ENST00000300107	human	ensembl	74_37	-1	known	missense	c.1044	p.E348D	0.969	pfam_ATPase_AAA-2,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855				139	1	0.714286	84	41	32.8
CILP	0	genome.wustl.edu	37	15	65489827	65489827	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65489827	65489827	C	A	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.2797	p.D933Y	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				170	0	0	92	33	26.4
CILP	0	genome.wustl.edu	37	15	65490661	65490661	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65490661	65490661	G	A	SNP	CILP	ENST00000261883	human	ensembl	74_37	-1	known	missense	c.1963	p.R655W	1.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP	HGNC	ENSG00000138615				166	1	0.598802	105	39	27.0833
DENND4A	0	genome.wustl.edu	37	15	65962360	65962360	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65962360	65962360	C	T	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	missense	c.4628	p.R1543Q	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				26	0	0	31	8	20.5128
DENND4A	0	genome.wustl.edu	37	15	65962413	65962413	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65962413	65962413	G	A	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	silent	c.4575	p.F1525	0.998	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				27	0	0	19	9	32.1429
DENND4A	0	genome.wustl.edu	37	15	65968830	65968830	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65968830	65968830	C	A	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	missense	c.4319	p.R1440I	0.956	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				61	0	0	28	11	28.2051
DENND4A	0	genome.wustl.edu	37	15	65983414	65983414	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	65983414	65983414	T	G	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	missense	c.3515	p.E1172A	0.186	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				39	0	0	18	13	41.9355
DENND4A	0	genome.wustl.edu	37	15	66044740	66044740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	66044740	66044740	C	T	SNP	DENND4A	ENST00000443035	human	ensembl	74_37	-1	known	missense	c.538	p.D180N	1.000	smart_uDENN_dom,pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,tigrfam_Pentatricopeptide_repeat	-	no_errors	DENND4A	HGNC	ENSG00000174485				72	0	0	43	21	32.8125
MEGF11	0	genome.wustl.edu	37	15	66416290	66416290	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	66416290	66416290	G	T	SNP	MEGF11	ENST00000288745	human	ensembl	74_37	-1	known	missense	c.23	p.S8Y	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF11	HGNC	ENSG00000157890				90	0	0	63	19	23.1707
ZWILCH	0	genome.wustl.edu	37	15	66811286	66811286	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	66811286	66811286	T	G	SNP	ZWILCH	ENST00000307897	human	ensembl	74_37	+1	known	silent	c.390	p.V130	0.691	pfam_RZZ-complex_zwilch	pfam_RZZ-complex_zwilch	-	no_errors	ZWILCH	HGNC	ENSG00000174442				138	0	0	88	6	6.38298
LCTL	0	genome.wustl.edu	37	15	66850086	66850086	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	66850086	66850086	T	C	SNP	LCTL	ENST00000341509	human	ensembl	74_37	-1	known	missense	c.896	p.Y299C	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCTL	HGNC	ENSG00000188501				216	0	0	115	68	37.1585
IQCH	0	genome.wustl.edu	37	15	67629323	67629323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	67629323	67629323	C	T	SNP	IQCH	ENST00000335894	human	ensembl	74_37	+1	known	missense	c.398	p.S133L	0.982	NULL	superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599				82	0	0	46	16	25.8065
FEM1B	0	genome.wustl.edu	37	15	68583466	68583466	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	68583466	68583466	A	C	SNP	FEM1B	ENST00000306917	human	ensembl	74_37	+1	known	missense	c.1770	p.K590N	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1B	HGNC	ENSG00000169018				79	0	0	39	13	25
NOX5	0	genome.wustl.edu	37	15	69339194	69339194	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	69339194	69339194	C	A	SNP	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	missense	c.1680	p.F560L	0.997	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				117	0	0	61	22	26.506
TLE3	0	genome.wustl.edu	37	15	70344723	70344723	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	70344723	70344723	G	A	SNP	TLE3	ENST00000558939	human	ensembl	74_37	-1	known	silent	c.2124	p.F708	0.384	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332				98	0	0	45	15	25
UACA	0	genome.wustl.edu	37	15	70960067	70960067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	70960067	70960067	C	T	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.2956	p.A986T	0.559	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				144	0	0	113	35	23.6486
UACA	0	genome.wustl.edu	37	15	70960325	70960325	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	70960325	70960325	T	C	SNP	UACA	ENST00000322954	human	ensembl	74_37	-1	known	missense	c.2698	p.I900V	0.000	superfamily_Prefoldin	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Prefoldin,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_T_SNARE_dom,prints_Ankyrin_rpt	-	no_errors	UACA	HGNC	ENSG00000137831				34	0	0	29	22	43.1373
PKM	0	genome.wustl.edu	37	15	72492905	72492905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	72492905	72492905	G	A	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.1399	p.R467C	1.000	pfam_Pyrv_Knase_C,superfamily_Pyrv_Knase_C,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				140	0	0	62	26	29.5455
PKM	0	genome.wustl.edu	37	15	72511433	72511433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	72511433	72511433	C	T	SNP	PKM	ENST00000449901	human	ensembl	74_37	-1	known	missense	c.53	p.R18Q	0.972	NULL	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				144	0	0	90	38	29.6875
BBS4	0	genome.wustl.edu	37	15	72987519	72987519	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	72987519	72987519	G	T	SNP	BBS4	ENST00000395205	human	ensembl	74_37	+1	known	missense	c.50	p.R17I	0.999	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	BBS4	HGNC	ENSG00000140463				64	0	0	58	16	21.6216
NPTN	0	genome.wustl.edu	37	15	73866030	73866030	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	73866030	73866030	C	T	SNP	NPTN	ENST00000345330	human	ensembl	74_37	-1	known	nonsense	c.813	p.W271*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_MFS_dom_general_subst_transpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	NPTN	HGNC	ENSG00000156642				147	0	0	76	29	27.619
C15orf59	0	genome.wustl.edu	37	15	74032415	74032415	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	74032415	74032415	C	T	SNP	C15orf59	ENST00000379822	human	ensembl	74_37	-1	known	missense	c.725	p.R242H	0.995	NULL	superfamily_Polyketide_synth_docking	-	no_errors	C15orf59	HGNC	ENSG00000205363				107	0	0	43	23	34.8485
LOXL1	0	genome.wustl.edu	37	15	74241881	74241881	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	74241881	74241881	C	T	SNP	LOXL1	ENST00000261921	human	ensembl	74_37	+1	known	missense	c.1684	p.R562C	0.989	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038				144	0	0	53	25	32.0513
PML	0	genome.wustl.edu	37	15	74290724	74290724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	74290724	74290724	G	A	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.509	p.R170H	0.974	NULL	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				76	0	0	46	24	34.2857
CYP1A1	0	genome.wustl.edu	37	15	75014767	75014767	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75014767	75014767	G	A	SNP	CYP1A1	ENST00000379727	human	ensembl	74_37	-1	known	silent	c.672	p.F224	0.934	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465				127	1	0.78125	69	30	30.303
SCAMP2	0	genome.wustl.edu	37	15	75146371	75146371	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75146371	75146371	C	T	SNP	SCAMP2	ENST00000268099	human	ensembl	74_37	-1	known	silent	c.216	p.P72	0.013	NULL	pfam_SCAMP	-	no_errors	SCAMP2	HGNC	ENSG00000140497				94	0	0	52	5	8.77193
C15orf39	0	genome.wustl.edu	37	15	75500865	75500865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75500865	75500865	G	A	SNP	C15orf39	ENST00000360639	human	ensembl	74_37	+1	known	missense	c.2476	p.D826N	0.151	NULL	NULL	-	no_errors	C15orf39	HGNC	ENSG00000167173				15	0	0	9	3	25
GOLGA6C	0	genome.wustl.edu	37	15	75562507	75562507	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75562507	75562507	C	T	SNP	GOLGA6C	ENST00000300576	human	ensembl	74_37	+1	known	silent	c.2049	p.I683	1.000	NULL	NULL	-	no_errors	GOLGA6C	HGNC	ENSG00000167195				151	0	0	73	37	33.6364
DNM1P34	0	genome.wustl.edu	37	15	75595026	75595026	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75595026	75595026	C	T	SNP	DNM1P34	ENST00000567292	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.653	-	-	-	no_errors	DNM1P34	HGNC	ENSG00000260357				17	0	0	13	7	35
SIN3A	0	genome.wustl.edu	37	15	75664355	75664355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75664355	75664355	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	missense	c.3787	p.R1263C	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				134	1	0.740741	70	32	31.3725
SNUPN	0	genome.wustl.edu	37	15	75893539	75893539	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75893539	75893539	C	A	SNP	SNUPN	ENST00000371091	human	ensembl	74_37	-1	known	missense	c.825	p.K275N	1.000	pirsf_Snurportin-1	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371				122	0	0	70	40	36.3636
SNX33	0	genome.wustl.edu	37	15	75941999	75941999	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75941999	75941999	T	C	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	missense	c.556	p.F186L	0.998	pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548				178	0	0	79	33	29.4643
CSPG4	0	genome.wustl.edu	37	15	75969500	75969500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	75969500	75969500	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.5360	p.A1787V	0.992	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				17	0	0	4	5	55.5556
PEAK1	0	genome.wustl.edu	37	15	77425509	77425509	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	77425509	77425509	G	A	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	silent	c.3915	p.C1305	0.807	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				171	1	0.581395	86	58	40.2778
PEAK1	0	genome.wustl.edu	37	15	77471135	77471135	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	77471135	77471135	A	C	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.3134	p.L1045R	0.927	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				76	0	0	37	21	36.2069
LOC645752	0	genome.wustl.edu	37	15	78214104	78214104	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	78214104	78214104	C	A	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.278	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776				125	0	0	78	38	32.7586
SH2D7	0	genome.wustl.edu	37	15	78390311	78390311	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	78390311	78390311	C	T	SNP	SH2D7	ENST00000328828	human	ensembl	74_37	+1	novel	nonsense	c.307	p.R103*	0.000	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D7	HGNC	ENSG00000183476				72	0	0	38	26	40.625
DNAJA4	0	genome.wustl.edu	37	15	78562971	78562971	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	78562971	78562971	T	G	SNP	DNAJA4	ENST00000394855	human	ensembl	74_37	+1	known	missense	c.352	p.F118V	1.000	superfamily_DnaJ_domain	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA4	HGNC	ENSG00000140403				167	0	0	98	63	39.1304
DNAJA4	0	genome.wustl.edu	37	15	78568044	78568044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	78568044	78568044	G	A	SNP	DNAJA4	ENST00000394855	human	ensembl	74_37	+1	known	missense	c.938	p.R313Q	1.000	pfam_DnaJ_C,superfamily_HSP40/DnaJ_pept-bd	pfam_DnaJ_domain,pfam_DnaJ_C,pfam_HSP_DnaJ_Cys-rich_dom,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,superfamily_HSP_DnaJ_Cys-rich_dom,smart_DnaJ_domain,pfscan_DnaJ_domain,pfscan_HSP_DnaJ_Cys-rich_dom,prints_DnaJ_domain	-	no_errors	DNAJA4	HGNC	ENSG00000140403				46	0	0	21	16	43.2432
ENSG00000261303	0	genome.wustl.edu	37	15	79023377	79023377	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79023377	79023377	C	T	SNP	ENSG00000261303	ENST00000568337	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.552	-	-	-	no_errors	RP11-160C18.2	Clone_based_vega_gene	ENSG00000261303				21	0	0	10	4	28.5714
ADAMTS7	0	genome.wustl.edu	37	15	79059228	79059228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79059228	79059228	C	T	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.3025	p.G1009S	0.997	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				56	0	0	29	12	29.2683
MORF4L1	0	genome.wustl.edu	37	15	79172918	79172918	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79172918	79172918	A	C	SNP	MORF4L1	ENST00000331268	human	ensembl	74_37	+1	known	missense	c.152	p.K51T	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_EAF3/MRG15	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,pirsf_EAF3/MRG15	-	no_errors	MORF4L1	HGNC	ENSG00000185787				49	0	0	31	12	27.907
RASGRF1	0	genome.wustl.edu	37	15	79290303	79290303	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79290303	79290303	G	T	SNP	RASGRF1	ENST00000561112	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RASGRF1	HGNC	ENSG00000058335				24	0	0	1	5	83.3333
RASGRF1	0	genome.wustl.edu	37	15	79307749	79307749	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79307749	79307749	A	C	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.1746	p.C582W	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				86	0	0	37	16	30.1887
RASGRF1	0	genome.wustl.edu	37	15	79323837	79323837	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79323837	79323837	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	silent	c.1167	p.I389	0.990	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				36	0	0	15	6	28.5714
RASGRF1	0	genome.wustl.edu	37	15	79339308	79339308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79339308	79339308	G	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.658	p.R220W	1.000	superfamily_DH-domain,pfscan_IQ_motif_EF-hand-BS	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				125	0	0	42	25	37.3134
KIAA1024	0	genome.wustl.edu	37	15	79748821	79748821	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79748821	79748821	A	C	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.332	p.K111T	0.001	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				123	1	0.806452	57	38	40
KIAA1024	0	genome.wustl.edu	37	15	79749039	79749039	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	79749039	79749039	G	T	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	nonsense	c.550	p.E184*	0.860	NULL	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				99	0	0	52	24	31.5789
KIAA1199	0	genome.wustl.edu	37	15	81188291	81188291	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	81188291	81188291	A	C	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.1301	p.K434T	0.205	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				130	0	0	58	28	32.5581
KIAA1199	0	genome.wustl.edu	37	15	81241258	81241258	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	81241258	81241258	A	C	SNP	KIAA1199	ENST00000220244	human	ensembl	74_37	+1	known	missense	c.4079	p.K1360T	0.946	NULL	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	KIAA1199	HGNC	ENSG00000103888				213	0	0	96	43	30.9353
MESDC1	0	genome.wustl.edu	37	15	81294772	81294772	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	81294772	81294772	T	C	SNP	MESDC1	ENST00000267984	human	ensembl	74_37	+1	known	missense	c.160	p.S54P	1.000	NULL	NULL	-	no_errors	MESDC1	HGNC	ENSG00000140406				29	0	0	16	9	36
TMC3	0	genome.wustl.edu	37	15	81625178	81625178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	81625178	81625178	G	A	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	missense	c.2885	p.S962F	0.485	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				54	0	0	22	11	33.3333
MEX3B	0	genome.wustl.edu	37	15	82336352	82336352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	82336352	82336352	C	T	SNP	MEX3B	ENST00000329713	human	ensembl	74_37	-1	known	missense	c.859	p.D287N	1.000	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3B	HGNC	ENSG00000183496				104	0	0	47	24	33.8028
EFTUD1	0	genome.wustl.edu	37	15	82444040	82444040	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	82444040	82444040	C	A	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	nonsense	c.2755	p.E919*	0.000	superfamily_Ribosomal_S5_D2-typ_fold	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				179	0	0	97	49	33.5616
EFTUD1	0	genome.wustl.edu	37	15	82444245	82444245	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	82444245	82444245	A	G	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	silent	c.2550	p.G850	0.997	superfamily_Ribosomal_S5_D2-typ_fold	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				84	0	0	47	24	33.8028
AP3B2	0	genome.wustl.edu	37	15	83358164	83358164	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	83358164	83358164	G	T	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.155	p.S52Y	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				34	0	0	24	11	31.4286
HOMER2	0	genome.wustl.edu	37	15	83561463	83561463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	83561463	83561463	G	A	SNP	HOMER2	ENST00000304231	human	ensembl	74_37	-1	known	missense	c.136	p.R46W	1.000	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER2	HGNC	ENSG00000103942				251	1	0.396825	136	67	33.0049
BTBD1	0	genome.wustl.edu	37	15	83698921	83698921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	83698921	83698921	C	T	SNP	BTBD1	ENST00000261721	human	ensembl	74_37	-1	known	missense	c.1022	p.R341H	1.000	pfam_PHR	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726				601	0	0	309	141	31.3333
BNC1	0	genome.wustl.edu	37	15	83926276	83926276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	83926276	83926276	G	A	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.2903	p.S968L	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594				201	1	0.49505	111	55	33.1325
ADAMTSL3	0	genome.wustl.edu	37	15	84442274	84442274	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	84442274	84442274	G	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	splice_site	c.190-1	e3-1	1.000	-	-	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				44	0	0	32	20	38.4615
ADAMTSL3	0	genome.wustl.edu	37	15	84527579	84527579	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	84527579	84527579	A	G	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	silent	c.789	p.G263	0.999	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218				107	0	0	73	37	33.6364
SEC11A	0	genome.wustl.edu	37	15	85230953	85230953	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	85230953	85230953	G	A	SNP	SEC11A	ENST00000268220	human	ensembl	74_37	-1	known	nonsense	c.214	p.R72*	1.000	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,tigrfam_Peptidase_S26B	pfam_Peptidase_S24_S26,superfamily_Peptidase_S24_S26A/B/C,prints_Peptidase_S26B,tigrfam_Peptidase_S26B	-	no_errors	SEC11A	HGNC	ENSG00000140612				83	0	0	51	33	39.2857
SLC28A1	0	genome.wustl.edu	37	15	85478326	85478326	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	85478326	85478326	C	T	SNP	SLC28A1	ENST00000286749	human	ensembl	74_37	+1	known	silent	c.1284	p.I428	0.957	pfam_Nucleos_tra2_C,tigrfam_C_nuclsd_transpt_met_bac	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A1	HGNC	ENSG00000156222				153	0	0	61	38	38.3838
AKAP13	0	genome.wustl.edu	37	15	86124509	86124509	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	86124509	86124509	G	T	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.3210	p.K1070N	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				119	0	0	49	17	25.7576
AGBL1	0	genome.wustl.edu	37	15	86697732	86697732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	86697732	86697732	C	A	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.196	p.L66I	0.977	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				48	0	0	33	4	10.8108
AGBL1	0	genome.wustl.edu	37	15	86807892	86807892	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	86807892	86807892	A	C	SNP	AGBL1	ENST00000441037	human	ensembl	74_37	+1	known	missense	c.1352	p.K451T	0.820	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748				183	0	0	114	53	31.7365
NTRK3	0	genome.wustl.edu	37	15	88420315	88420315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	88420315	88420315	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.2371	p.R791W	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				75	0	0	30	20	40
NTRK3	0	genome.wustl.edu	37	15	88679173	88679173	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	88679173	88679173	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	silent	c.864	p.N288	0.818	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				131	0	0	44	32	42.1053
FANCI	0	genome.wustl.edu	37	15	89807192	89807192	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	89807192	89807192	T	C	SNP	FANCI	ENST00000310775	human	ensembl	74_37	+1	known	missense	c.604	p.F202L	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525				135	0	0	81	42	34.1463
FANCI	0	genome.wustl.edu	37	15	89849327	89849327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	89849327	89849327	G	A	SNP	FANCI	ENST00000310775	human	ensembl	74_37	+1	known	missense	c.3439	p.E1147K	1.000	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525				136	0	0	81	41	33.6066
POLG	0	genome.wustl.edu	37	15	89860719	89860719	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	89860719	89860719	G	A	SNP	POLG	ENST00000268124	human	ensembl	74_37	-1	known	silent	c.3531	p.V1177	0.966	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt	-	no_errors	POLG	HGNC	ENSG00000140521				119	0	0	60	29	32.5843
PEX11A	0	genome.wustl.edu	37	15	90226989	90226989	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90226989	90226989	C	T	SNP	PEX11A	ENST00000300056	human	ensembl	74_37	-1	known	silent	c.363	p.T121	0.002	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11A	HGNC	ENSG00000166821				182	0	0	109	53	32.716
PEX11A	0	genome.wustl.edu	37	15	90227003	90227003	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90227003	90227003	C	A	SNP	PEX11A	ENST00000300056	human	ensembl	74_37	-1	known	nonsense	c.349	p.E117*	1.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11A	HGNC	ENSG00000166821				167	0	0	100	50	33.3333
WDR93	0	genome.wustl.edu	37	15	90255298	90255298	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90255298	90255298	C	A	SNP	WDR93	ENST00000268130	human	ensembl	74_37	+1	known	silent	c.603	p.I201	0.311	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527				64	0	0	35	16	31.3725
ANPEP	0	genome.wustl.edu	37	15	90340835	90340835	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90340835	90340835	C	A	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.2128	p.D710Y	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				212	0	0	126	49	28
SEMA4B	0	genome.wustl.edu	37	15	90770845	90770845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90770845	90770845	C	T	SNP	SEMA4B	ENST00000332496	human	ensembl	74_37	+1	known	missense	c.1745	p.S582L	0.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4B	HGNC	ENSG00000185033				49	0	0	21	9	30
TTLL13	0	genome.wustl.edu	37	15	90799398	90799398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	90799398	90799398	C	T	SNP	TTLL13	ENST00000438251	human	ensembl	74_37	+1	known	missense	c.574	p.R192C	0.679	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL13	HGNC	ENSG00000213471				162	0	0	81	36	30.7692
IQGAP1	0	genome.wustl.edu	37	15	91034623	91034623	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	91034623	91034623	A	C	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	missense	c.4307	p.D1436A	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_WW_dom,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575				102	0	0	58	29	33.3333
SLCO3A1	0	genome.wustl.edu	37	15	92669380	92669380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	92669380	92669380	C	T	SNP	SLCO3A1	ENST00000318445	human	ensembl	74_37	+1	known	missense	c.1264	p.R422W	0.991	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO3A1	HGNC	ENSG00000176463				124	0	0	62	23	27.0588
SPATA8	0	genome.wustl.edu	37	15	97327401	97327401	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	97327401	97327401	C	A	SNP	SPATA8	ENST00000328504	human	ensembl	74_37	+1	known	missense	c.108	p.F36L	0.565	NULL	NULL	-	no_errors	SPATA8	HGNC	ENSG00000185594				111	0	0	59	38	39.1753
FAM169B	0	genome.wustl.edu	37	15	99023939	99023939	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	99023939	99023939	C	T	SNP	FAM169B	ENST00000332908	human	ensembl	74_37	-1	known	missense	c.74	p.R25K	0.984	NULL	NULL	-	no_errors	FAM169B	HGNC	ENSG00000185087				93	0	0	75	23	23.4694
IGF1R	0	genome.wustl.edu	37	15	99456496	99456496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	99456496	99456496	C	T	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.1813	p.R605C	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				183	0	0	82	33	28.6957
SYNM	0	genome.wustl.edu	37	15	99671321	99671321	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	99671321	99671321	A	C	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.2753	p.E918A	0.023	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				21	0	0	6	5	45.4545
SYNM	0	genome.wustl.edu	37	15	99671359	99671359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	99671359	99671359	G	A	SNP	SYNM	ENST00000336292	human	ensembl	74_37	+1	known	missense	c.2791	p.E931K	0.617	NULL	pfam_IF	-	no_errors	SYNM	HGNC	ENSG00000182253				22	0	0	7	7	50
TTC23	0	genome.wustl.edu	37	15	99696335	99696335	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	99696335	99696335	T	C	SNP	TTC23	ENST00000394129	human	ensembl	74_37	-1	putative	silent	c.1161	p.V387	0.000	NULL	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852				77	0	0	43	22	33.8462
CIITA	0	genome.wustl.edu	37	16	10998602	10998602	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	10998602	10998602	G	A	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	silent	c.939	p.E313	0.941	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				184	0	0	101	63	38.4146
CIITA	0	genome.wustl.edu	37	16	11000864	11000864	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	11000864	11000864	A	C	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.1515	p.E505D	0.754	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,prints_MHC_II_transact	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				168	1	0.591716	74	41	35.6522
CLEC16A	0	genome.wustl.edu	37	16	11071150	11071150	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	11071150	11071150	A	G	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	missense	c.797	p.D266G	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532				100	0	0	58	20	25.641
SSTR5	0	genome.wustl.edu	37	16	1129228	1129228	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1129228	1129228	C	T	SNP	SSTR5	ENST00000293897	human	ensembl	74_37	+1	known	silent	c.360	p.G120	0.996	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt_5,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt	-	no_errors	SSTR5	HGNC	ENSG00000162009				83	0	0	34	15	30.6122
C1QTNF8	0	genome.wustl.edu	37	16	1143888	1143888	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1143888	1143888	G	A	SNP	C1QTNF8	ENST00000328449	human	ensembl	74_37	-1	known	silent	c.372	p.R124	0.012	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF8	HGNC	ENSG00000184471				40	0	0	14	8	36.3636
RMI2	0	genome.wustl.edu	37	16	11444642	11444642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	11444642	11444642	C	T	SNP	RMI2	ENST00000312499	human	ensembl	74_37	+1	known	missense	c.439	p.P147S	0.969	NULL	NULL	-	no_errors	RMI2	HGNC	ENSG00000175643				99	0	0	39	32	45.0704
ZC3H7A	0	genome.wustl.edu	37	16	11862354	11862354	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	11862354	11862354	T	C	SNP	ZC3H7A	ENST00000355758	human	ensembl	74_37	-1	known	missense	c.1177	p.N393D	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H7A	HGNC	ENSG00000122299				78	0	0	42	23	35.3846
RSL1D1	0	genome.wustl.edu	37	16	11931697	11931697	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	11931697	11931697	A	G	SNP	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	missense	c.1420	p.S474P	0.046	NULL	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490				300	0	0	168	84	33.3333
SNX29	0	genome.wustl.edu	37	16	12293490	12293490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	12293490	12293490	A	C	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	missense	c.473	p.K158T	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				30	0	0	15	6	28.5714
CACNA1H	0	genome.wustl.edu	37	16	1270018	1270018	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1270018	1270018	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.6086	p.D2029G	0.024	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				9	0	0	9	3	25
CPPED1	0	genome.wustl.edu	37	16	12758897	12758897	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	12758897	12758897	G	T	SNP	CPPED1	ENST00000381774	human	ensembl	74_37	-1	known	nonsense	c.791	p.S264*	1.000	NULL	pfam_PEstase_dom	-	no_errors	CPPED1	HGNC	ENSG00000103381				90	0	0	53	33	38.3721
CPPED1	0	genome.wustl.edu	37	16	12798748	12798748	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	12798748	12798748	A	G	SNP	CPPED1	ENST00000381774	human	ensembl	74_37	-1	known	missense	c.448	p.Y150H	1.000	pfam_PEstase_dom	pfam_PEstase_dom	-	no_errors	CPPED1	HGNC	ENSG00000103381				94	0	0	52	34	39.5349
ERCC4	0	genome.wustl.edu	37	16	14029335	14029335	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	14029335	14029335	C	T	SNP	ERCC4	ENST00000311895	human	ensembl	74_37	+1	known	nonsense	c.1546	p.R516*	0.007	tigrfam_Rad1	pfam_ERCC4_domain,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_ERCC4_domain,tigrfam_Rad1	-	no_errors	ERCC4	HGNC	ENSG00000175595				97	0	0	52	26	33.3333
GNPTG	0	genome.wustl.edu	37	16	1412835	1412835	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1412835	1412835	G	T	SNP	GNPTG	ENST00000204679	human	ensembl	74_37	+1	known	nonsense	c.751	p.E251*	0.046	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581				201	0	0	99	58	36.9427
MKL2	0	genome.wustl.edu	37	16	14307444	14307444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	14307444	14307444	C	T	SNP	MKL2	ENST00000341243	human	ensembl	74_37	+1	known	missense	c.286	p.R96C	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL2	HGNC	ENSG00000186260				74	0	0	64	33	34.0206
PARN	0	genome.wustl.edu	37	16	14711452	14711452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	14711452	14711452	C	T	SNP	PARN	ENST00000437198	human	ensembl	74_37	-1	known	missense	c.383	p.R128Q	1.000	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	pfam_RNase_CAF1,pfam_PolyA-riboNase_RNA_binding,pfam_R3H_ss-bd,superfamily_RNaseH-like_dom,pfscan_R3H_ss-bd	-	no_errors	PARN	HGNC	ENSG00000140694				40	0	0	26	13	33.3333
NOMO1	0	genome.wustl.edu	37	16	14983060	14983060	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	14983060	14983060	T	G	SNP	NOMO1	ENST00000287667	human	ensembl	74_37	+1	known	missense	c.3432	p.I1144M	0.993	NULL	pfam_DUF2012,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,superfamily_Collagen-bd_Cna_B-typ_dom	-	no_errors	NOMO1	HGNC	ENSG00000103512				350	0	0	154	99	39.1304
ENSG00000263065	0	genome.wustl.edu	37	16	15835523	15835523	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	15835523	15835523	T	C	SNP	ENSG00000263065	ENST00000577048	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	AF001548.6	Clone_based_vega_gene	ENSG00000263065				243	0	0	116	48	29.2683
MYH11	0	genome.wustl.edu	37	16	15880505	15880505	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	15880505	15880505	C	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.615	p.K205N	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				46	0	0	22	14	38.8889
SPSB3	0	genome.wustl.edu	37	16	1828538	1828538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1828538	1828538	C	T	SNP	SPSB3	ENST00000301717	human	ensembl	74_37	-1	known	missense	c.202	p.E68K	1.000	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB3	HGNC	ENSG00000162032				109	0	0	44	18	29.0323
ABCC6P1	0	genome.wustl.edu	37	16	18597204	18597204	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	18597204	18597204	G	T	SNP	ABCC6P1	ENST00000546162	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	ABCC6P1	HGNC	ENSG00000256340				54	0	0	16	26	61.9048
ARL6IP1	0	genome.wustl.edu	37	16	18810043	18810043	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	18810043	18810043	A	G	SNP	ARL6IP1	ENST00000562819	human	ensembl	74_37	-1	novel	splice_site	c.148+2	e2+2	0.996	-	-	-	no_errors	ARL6IP1	HGNC	ENSG00000170540				206	0	0	113	43	27.5641
SMG1	0	genome.wustl.edu	37	16	18841653	18841653	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	18841653	18841653	C	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.8831	p.R2944I	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				40	0	0	36	22	37.931
SMG1	0	genome.wustl.edu	37	16	18856860	18856860	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	18856860	18856860	T	C	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.6110	p.E2037G	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				123	0	0	66	27	29.0323
SMG1	0	genome.wustl.edu	37	16	18880520	18880520	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	18880520	18880520	C	T	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	nonsense	c.2739	p.W913*	1.000	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				93	0	0	62	27	30.3371
KNOP1	0	genome.wustl.edu	37	16	19725601	19725601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	19725601	19725601	G	A	SNP	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	missense	c.757	p.P253S	0.000	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				135	0	0	69	39	36.1111
KNOP1	0	genome.wustl.edu	37	16	19726316	19726316	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	19726316	19726316	C	T	SNP	KNOP1	ENST00000219837	human	ensembl	74_37	-1	known	silent	c.42	p.E14	0.960	NULL	NULL	-	no_errors	KNOP1	HGNC	ENSG00000103550				149	0	0	86	30	25.8621
GPRC5B	0	genome.wustl.edu	37	16	19883861	19883861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	19883861	19883861	T	C	SNP	GPRC5B	ENST00000537135	human	ensembl	74_37	-1	known	missense	c.385	p.T129A	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5B	HGNC	ENSG00000167191				53	0	0	26	14	35
RPL3L	0	genome.wustl.edu	37	16	1994856	1994856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	1994856	1994856	C	A	SNP	RPL3L	ENST00000268661	human	ensembl	74_37	-1	known	missense	c.1206	p.E402D	0.186	NULL	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986				298	0	0	139	74	34.7418
PDILT	0	genome.wustl.edu	37	16	20380850	20380850	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20380850	20380850	C	A	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.1080	p.K360N	0.109	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				205	1	0.485437	112	57	33.7278
PDILT	0	genome.wustl.edu	37	16	20384348	20384348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20384348	20384348	C	T	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	missense	c.778	p.E260K	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				183	0	0	112	65	36.7232
ACSM2A	0	genome.wustl.edu	37	16	20471449	20471449	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20471449	20471449	C	T	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	nonsense	c.13	p.R5*	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				85	0	0	64	4	5.88235
ACSM2A	0	genome.wustl.edu	37	16	20476902	20476902	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20476902	20476902	T	C	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.241	p.W81R	0.996	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				74	0	0	46	22	32.3529
ACSM2B	0	genome.wustl.edu	37	16	20559486	20559486	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20559486	20559486	C	A	SNP	ACSM2B	ENST00000329697	human	ensembl	74_37	-1	known	missense	c.996	p.Q332H	0.101	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2B	HGNC	ENSG00000066813				250	0	0	171	77	31.0484
ACSM1	0	genome.wustl.edu	37	16	20696520	20696520	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20696520	20696520	C	T	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	missense	c.398	p.R133Q	0.960	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743				122	0	0	59	29	32.9545
ACSM1	0	genome.wustl.edu	37	16	20696700	20696700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20696700	20696700	G	A	SNP	ACSM1	ENST00000307493	human	ensembl	74_37	-1	known	missense	c.218	p.A73V	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM1	HGNC	ENSG00000166743				203	0	0	110	51	31.677
ACSM3	0	genome.wustl.edu	37	16	20781488	20781488	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20781488	20781488	A	C	SNP	ACSM3	ENST00000289416	human	ensembl	74_37	+1	known	missense	c.132	p.E44D	0.998	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM3	HGNC	ENSG00000005187				117	0	0	77	27	25.9615
LOC81691	0	genome.wustl.edu	37	16	20851123	20851123	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20851123	20851123	T	G	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.1430	p.I477S	0.068	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				336	0	0	198	88	30.7692
LOC81691	0	genome.wustl.edu	37	16	20851723	20851723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20851723	20851723	C	T	SNP	LOC81691	ENST00000261377	human	ensembl	74_37	+1	known	missense	c.1559	p.A520V	0.756	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_RRM_dom,superfamily_RNaseH-like_dom,smart_Exonuclease,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC004381.6	Clone_based_vega_gene	ENSG00000005189				139	0	0	84	47	35.8779
DNAH3	0	genome.wustl.edu	37	16	20974776	20974776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20974776	20974776	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.10430	p.R3477Q	0.998	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				85	0	0	43	24	35.8209
DNAH3	0	genome.wustl.edu	37	16	20975792	20975792	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20975792	20975792	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.9414	p.I3138	0.220	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				252	0	0	156	72	31.5789
DNAH3	0	genome.wustl.edu	37	16	20976341	20976341	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20976341	20976341	T	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8865	p.E2955D	0.080	superfamily_Prefoldin	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				262	0	0	143	76	34.7032
DNAH3	0	genome.wustl.edu	37	16	20976706	20976706	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20976706	20976706	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8500	p.L2834I	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				132	1	0.75188	82	41	33.3333
DNAH3	0	genome.wustl.edu	37	16	20996988	20996988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20996988	20996988	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.7076	p.R2359Q	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				225	0	0	109	52	32.2981
DNAH3	0	genome.wustl.edu	37	16	20999312	20999312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	20999312	20999312	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.6677	p.S2226L	0.356	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				104	0	0	65	34	34.3434
DNAH3	0	genome.wustl.edu	37	16	21136675	21136675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21136675	21136675	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.1225	p.A409T	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				118	0	0	52	25	32.4675
ZP2	0	genome.wustl.edu	37	16	21210159	21210159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21210159	21210159	T	C	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.1952	p.K651R	0.011	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				53	0	0	29	12	29.2683
ZP2	0	genome.wustl.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21213314	21213314	C	T	SNP	ZP2	ENST00000219593	human	ensembl	74_37	-1	known	missense	c.1318	p.E440K	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC	ENSG00000103310				162	0	0	77	35	31.25
PKD1	0	genome.wustl.edu	37	16	2159869	2159869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2159869	2159869	T	C	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.5299	p.T1767A	0.001	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				80	0	0	39	13	25
OTOA	0	genome.wustl.edu	37	16	21698929	21698929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21698929	21698929	C	T	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	missense	c.595	p.R199W	0.076	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719				81	0	0	56	19	25.3333
RRN3P1	0	genome.wustl.edu	37	16	21822055	21822055	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21822055	21822055	C	A	SNP	RRN3P1	ENST00000551681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				9	0	0	7	7	50
UQCRC2	0	genome.wustl.edu	37	16	21994445	21994445	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	21994445	21994445	G	A	SNP	UQCRC2	ENST00000561553	human	ensembl	74_37	+1	putative	nonsense	c.1161	p.W387*	1.000	NULL	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	UQCRC2	HGNC	ENSG00000140740				123	0	0	76	15	16.4835
VWA3A	0	genome.wustl.edu	37	16	22142928	22142928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	22142928	22142928	C	T	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	missense	c.1750	p.R584W	0.000	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				46	0	0	16	9	36
VWA3A	0	genome.wustl.edu	37	16	22149750	22149750	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	22149750	22149750	G	T	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	nonsense	c.2209	p.E737*	0.893	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				36	0	0	13	7	35
VWA3A	0	genome.wustl.edu	37	16	22151506	22151506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	22151506	22151506	G	A	SNP	VWA3A	ENST00000389398	human	ensembl	74_37	+1	known	missense	c.2324	p.S775N	0.087	NULL	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	VWA3A	HGNC	ENSG00000175267				51	0	0	24	20	45.4545
CDR2	0	genome.wustl.edu	37	16	22361162	22361162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	22361162	22361162	C	T	SNP	CDR2	ENST00000561630	human	ensembl	74_37	-1	known	missense	c.88	p.E30K	1.000	NULL	NULL	-	no_errors	CDR2	HGNC	ENSG00000140743				170	0	0	84	49	36.8421
CASKIN1	0	genome.wustl.edu	37	16	2239124	2239124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2239124	2239124	G	A	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.521	p.A174V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				82	0	0	29	24	45.283
BRICD5	0	genome.wustl.edu	37	16	2260149	2260149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2260149	2260149	G	A	SNP	BRICD5	ENST00000562360	human	ensembl	74_37	-1	known	missense	c.314	p.A105V	0.102	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	pfam_BRICHOS_dom,pfscan_BRICHOS_dom	-	no_errors	BRICD5	HGNC	ENSG00000182685				33	0	0	15	9	37.5
HS3ST2	0	genome.wustl.edu	37	16	22926592	22926592	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	22926592	22926592	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	silent	c.813	p.F271	0.998	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				287	0	0	130	62	32.2917
USP31	0	genome.wustl.edu	37	16	23080168	23080168	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23080168	23080168	C	T	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	silent	c.3258	p.R1086	0.994	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				171	0	0	87	39	30.9524
USP31	0	genome.wustl.edu	37	16	23091492	23091492	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23091492	23091492	C	A	SNP	USP31	ENST00000219689	human	ensembl	74_37	-1	known	nonsense	c.1951	p.E651*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP31	HGNC	ENSG00000103404				108	0	0	41	22	34.9206
SCNN1B	0	genome.wustl.edu	37	16	23379279	23379279	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23379279	23379279	C	T	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	silent	c.1014	p.F338	0.340	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				176	1	0.564972	62	56	47.4576
SCNN1B	0	genome.wustl.edu	37	16	23391835	23391835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23391835	23391835	G	A	SNP	SCNN1B	ENST00000307331	human	ensembl	74_37	+1	known	missense	c.1771	p.D591N	1.000	tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1B	HGNC	ENSG00000168447				342	0	0	139	86	38.2222
ABCA3	0	genome.wustl.edu	37	16	2349486	2349486	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2349486	2349486	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.1659	p.N553	0.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				265	0	0	124	58	31.8681
UBFD1	0	genome.wustl.edu	37	16	23569435	23569435	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23569435	23569435	G	A	SNP	UBFD1	ENST00000219638	human	ensembl	74_37	+1	known	missense	c.862	p.D288N	0.988	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBFD1	HGNC	ENSG00000103353				25	0	0	12	6	33.3333
ABCA3	0	genome.wustl.edu	37	16	2367685	2367685	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2367685	2367685	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.954	p.I318	0.002	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				115	0	0	68	27	28.4211
PLK1	0	genome.wustl.edu	37	16	23690463	23690463	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	23690463	23690463	C	T	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	silent	c.210	p.I70	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851				44	0	0	18	7	28
ABCA3	0	genome.wustl.edu	37	16	2369629	2369629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2369629	2369629	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.826	p.L276F	0.999	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				141	0	0	67	24	26.3736
RBBP6	0	genome.wustl.edu	37	16	24552030	24552030	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	24552030	24552030	A	C	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.83	p.D28A	1.000	pfam_DWNN_domain	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				139	0	0	69	33	32.3529
RBBP6	0	genome.wustl.edu	37	16	24578677	24578677	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	24578677	24578677	T	C	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	silent	c.1803	p.P601	1.000	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				398	1	0.250627	227	130	36.4146
TNRC6A	0	genome.wustl.edu	37	16	24802647	24802647	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	24802647	24802647	C	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.2684	p.S895Y	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				113	0	0	63	35	35.7143
TNRC6A	0	genome.wustl.edu	37	16	24803039	24803039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	24803039	24803039	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.3076	p.V1026I	0.649	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				69	0	0	38	25	39.6825
CCNF	0	genome.wustl.edu	37	16	2481197	2481197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2481197	2481197	G	A	SNP	CCNF	ENST00000397066	human	ensembl	74_37	+1	known	missense	c.83	p.R28Q	0.991	superfamily_F-box_dom	pfam_Cyclin_N,pfam_Cyclin_C-dom,pfam_F-box_dom,superfamily_Cyclin-like,superfamily_F-box_dom,smart_F-box_dom,smart_Cyclin-like,pfscan_F-box_dom	-	no_errors	CCNF	HGNC	ENSG00000162063				128	0	0	75	24	24.2424
CCNF	0	genome.wustl.edu	37	16	2503465	2503465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2503465	2503465	G	A	SNP	CCNF	ENST00000397066	human	ensembl	74_37	+1	known	missense	c.1642	p.D548N	0.978	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,pfam_F-box_dom,superfamily_Cyclin-like,superfamily_F-box_dom,smart_F-box_dom,smart_Cyclin-like,pfscan_F-box_dom	-	no_errors	CCNF	HGNC	ENSG00000162063				85	0	0	46	25	35.2113
PDPK1	0	genome.wustl.edu	37	16	2627488	2627488	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2627488	2627488	T	G	SNP	PDPK1	ENST00000342085	human	ensembl	74_37	+1	known	missense	c.772	p.S258A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PDPK1	HGNC	ENSG00000140992				36	0	0	13	7	35
IL21R	0	genome.wustl.edu	37	16	27460524	27460524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	27460524	27460524	G	A	SNP	IL21R	ENST00000337929	human	ensembl	74_37	+1	known	missense	c.1537	p.E513K	0.181	NULL	superfamily_Fibronectin_type3	-	no_errors	IL21R	HGNC	ENSG00000103522				116	0	0	53	20	27.3973
KIAA0556	0	genome.wustl.edu	37	16	27772749	27772749	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	27772749	27772749	T	C	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.3647	p.F1216S	1.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				101	0	0	51	20	28.169
GSG1L	0	genome.wustl.edu	37	16	27818854	27818854	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	27818854	27818854	G	A	SNP	GSG1L	ENST00000447459	human	ensembl	74_37	-1	known	silent	c.852	p.S284	0.008	NULL	pfam_GSG-1,pfam_PMP22/EMP/MP20/Claudin	-	no_errors	GSG1L	HGNC	ENSG00000169181				37	0	0	25	18	41.8605
SRRM2	0	genome.wustl.edu	37	16	2812791	2812791	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2812791	2812791	T	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.2262	p.I754M	0.690	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				279	1	0.357143	142	66	31.7308
SRRM2	0	genome.wustl.edu	37	16	2817372	2817372	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	2817372	2817372	T	C	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.6843	p.A2281	0.974	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				365	0	0	153	102	40
CD19	0	genome.wustl.edu	37	16	28946860	28946860	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	28946860	28946860	C	A	SNP	CD19	ENST00000538922	human	ensembl	74_37	+1	known	missense	c.931	p.L311I	0.957	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD19	HGNC	ENSG00000177455				89	0	0	37	14	27.451
CD19	0	genome.wustl.edu	37	16	28947495	28947495	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	28947495	28947495	G	T	SNP	CD19	ENST00000538922	human	ensembl	74_37	+1	known	missense	c.968	p.R323I	0.998	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD19	HGNC	ENSG00000177455				78	0	0	39	22	36.0656
SNX29P2	0	genome.wustl.edu	37	16	29367234	29367234	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	29367234	29367234	G	A	SNP	SNX29P2	ENST00000398878	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNX29P2	HGNC	ENSG00000198106				51	0	0	33	13	28.2609
NPIPB11	0	genome.wustl.edu	37	16	29401638	29401638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	29401638	29401638	C	T	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.281	p.R94Q	0.001	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206				45	0	0	23	8	25.8065
C16orf54	0	genome.wustl.edu	37	16	29755699	29755699	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	29755699	29755699	G	A	SNP	C16orf54	ENST00000329410	human	ensembl	74_37	-1	known	missense	c.574	p.P192S	0.150	NULL	NULL	-	no_errors	C16orf54	HGNC	ENSG00000185905				25	0	0	8	5	38.4615
TAOK2	0	genome.wustl.edu	37	16	29994826	29994826	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	29994826	29994826	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	silent	c.1263	p.G421	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				510	0	0	263	157	37.381
ITGAL	0	genome.wustl.edu	37	16	30522424	30522424	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	30522424	30522424	C	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.2753	p.P918H	0.844	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				210	0	0	91	34	27.2
CLDN6	0	genome.wustl.edu	37	16	3065372	3065372	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3065372	3065372	C	A	SNP	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	missense	c.651	p.K217N	1.000	prints_Claudin6	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				145	0	0	64	40	38.4615
SRCAP	0	genome.wustl.edu	37	16	30731499	30731499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	30731499	30731499	G	A	SNP	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	missense	c.2834	p.R945Q	0.740	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603				437	0	0	248	106	29.9435
ITGAM	0	genome.wustl.edu	37	16	31277142	31277142	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31277142	31277142	G	A	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	silent	c.249	p.E83	0.998	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896				52	0	0	21	19	47.5
ITGAM	0	genome.wustl.edu	37	16	31282341	31282341	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31282341	31282341	A	C	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	missense	c.494	p.D165A	0.935	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896				273	0	0	139	78	35.9447
ITGAX	0	genome.wustl.edu	37	16	31382767	31382767	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31382767	31382767	T	C	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.1954	p.S652P	0.041	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				110	0	0	44	24	35.2941
ITGAX	0	genome.wustl.edu	37	16	31391336	31391336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31391336	31391336	G	A	SNP	ITGAX	ENST00000268296	human	ensembl	74_37	+1	known	missense	c.3010	p.A1004T	0.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAX	HGNC	ENSG00000140678				96	0	0	47	26	35.6164
ITGAD	0	genome.wustl.edu	37	16	31405651	31405651	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31405651	31405651	C	T	SNP	ITGAD	ENST00000389202	human	ensembl	74_37	+1	known	silent	c.126	p.F42	0.597	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAD	HGNC	ENSG00000156886				47	0	0	32	12	27.2727
C16orf58	0	genome.wustl.edu	37	16	31504366	31504366	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31504366	31504366	G	T	SNP	C16orf58	ENST00000327237	human	ensembl	74_37	-1	known	silent	c.1020	p.V340	0.944	NULL	pfam_RUS2/WXR1	-	no_errors	C16orf58	HGNC	ENSG00000140688				45	0	0	23	10	30.303
AHSP	0	genome.wustl.edu	37	16	31539893	31539893	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31539893	31539893	G	T	SNP	AHSP	ENST00000302312	human	ensembl	74_37	+1	known	missense	c.190	p.D64Y	0.845	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	-	no_errors	AHSP	HGNC	ENSG00000169877				98	0	0	56	19	25.3333
AHSP	0	genome.wustl.edu	37	16	31539894	31539894	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31539894	31539894	A	G	SNP	AHSP	ENST00000302312	human	ensembl	74_37	+1	known	missense	c.191	p.D64G	0.819	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	pfam_A_Hb_stabilising_prot,superfamily_A_Hb_stabilising_prot	-	no_errors	AHSP	HGNC	ENSG00000169877				98	0	0	43	31	41.8919
ZNF267	0	genome.wustl.edu	37	16	31927273	31927273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	31927273	31927273	G	A	SNP	ZNF267	ENST00000300870	human	ensembl	74_37	+1	known	missense	c.1703	p.R568Q	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF267	HGNC	ENSG00000185947				63	0	0	43	23	34.8485
HERC2P4	0	genome.wustl.edu	37	16	32182858	32182858	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	32182858	32182858	C	T	SNP	HERC2P4	ENST00000564730	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267				203	0	0	119	26	17.931
HERC2P8	0	genome.wustl.edu	37	16	33123835	33123835	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	33123835	33123835	G	A	SNP	HERC2P8	ENST00000567073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HERC2P8	HGNC	ENSG00000261599				79	0	0	38	20	34.4828
ZNF263	0	genome.wustl.edu	37	16	3340119	3340119	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3340119	3340119	G	T	SNP	ZNF263	ENST00000219069	human	ensembl	74_37	+1	known	missense	c.1613	p.R538I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194				64	0	0	40	19	32.2034
TIGD7	0	genome.wustl.edu	37	16	3349373	3349373	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3349373	3349373	G	A	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	silent	c.1242	p.G414	0.797	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				222	0	0	172	92	34.8485
TIGD7	0	genome.wustl.edu	37	16	3349597	3349597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3349597	3349597	G	A	SNP	TIGD7	ENST00000268674	human	ensembl	74_37	-1	known	missense	c.1018	p.R340W	0.935	pfam_DDE_SF_endonuclease_CENPB-like	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD7	HGNC	ENSG00000140993				98	0	0	53	24	31.1688
BMS1P8	0	genome.wustl.edu	37	16	33497993	33497993	+	RNA	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	33497993	33497993	G	C	SNP	BMS1P8	ENST00000565156	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518				132	0	0	137	22	13.8365
RNA5-8SP2	0	genome.wustl.edu	37	16	33965525	33965525	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	33965525	33965525	C	T	SNP	RNA5-8SP2	ENST00000363564	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP2	HGNC	ENSG00000200434				81	0	0	51	16	23.8806
ZNF597	0	genome.wustl.edu	37	16	3486471	3486471	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3486471	3486471	A	G	SNP	ZNF597	ENST00000301744	human	ensembl	74_37	-1	known	silent	c.1228	p.L410	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF597	HGNC	ENSG00000167981				49	0	0	36	17	32.0755
SLX4	0	genome.wustl.edu	37	16	3644567	3644567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3644567	3644567	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.2047	p.A683T	0.331	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				102	0	0	37	13	26
TRAP1	0	genome.wustl.edu	37	16	3713498	3713498	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3713498	3713498	C	T	SNP	TRAP1	ENST00000246957	human	ensembl	74_37	-1	known	silent	c.1635	p.K545	1.000	pfam_Hsp90_fam,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	TRAP1	HGNC	ENSG00000126602				161	0	0	72	40	35.7143
CREBBP	0	genome.wustl.edu	37	16	3807913	3807913	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3807913	3807913	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.3506	p.R1169H	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				116	0	0	45	33	42.3077
CREBBP	0	genome.wustl.edu	37	16	3900321	3900321	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	3900321	3900321	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.775	p.A259T	0.503	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				155	0	0	74	34	31.4815
ADCY9	0	genome.wustl.edu	37	16	4015871	4015871	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	4015871	4015871	G	T	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.3967	p.R1323	0.352	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				155	0	0	73	35	32.4074
ADCY9	0	genome.wustl.edu	37	16	4016451	4016451	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	4016451	4016451	G	A	SNP	ADCY9	ENST00000294016	human	ensembl	74_37	-1	known	silent	c.3387	p.S1129	0.968	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY9	HGNC	ENSG00000162104				150	0	0	58	32	35.5556
GLIS2	0	genome.wustl.edu	37	16	4383520	4383520	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	4383520	4383520	G	A	SNP	GLIS2	ENST00000262366	human	ensembl	74_37	+1	known	silent	c.345	p.S115	0.977	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS2	HGNC	ENSG00000126603				48	0	0	18	15	45.4545
PAM16	0	genome.wustl.edu	37	16	4390266	4390266	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	4390266	4390266	T	G	SNP	PAM16	ENST00000573450	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PAM16	HGNC	ENSG00000217930				87	0	0	32	24	42.8571
SHCBP1	0	genome.wustl.edu	37	16	46633805	46633805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	46633805	46633805	C	T	SNP	SHCBP1	ENST00000303383	human	ensembl	74_37	-1	known	missense	c.1283	p.G428D	0.999	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	-	no_errors	SHCBP1	HGNC	ENSG00000171241				71	0	0	30	23	43.3962
MYLK3	0	genome.wustl.edu	37	16	46766221	46766221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	46766221	46766221	C	T	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.1361	p.G454E	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795				135	0	0	59	26	30.5882
NETO2	0	genome.wustl.edu	37	16	47163219	47163219	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	47163219	47163219	G	A	SNP	NETO2	ENST00000562435	human	ensembl	74_37	-1	known	nonsense	c.148	p.R50*	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO2	HGNC	ENSG00000171208				169	0	0	113	55	32.7381
PHKB	0	genome.wustl.edu	37	16	47723014	47723014	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	47723014	47723014	A	T	SNP	PHKB	ENST00000299167	human	ensembl	74_37	+1	known	missense	c.2693	p.D898V	1.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893				122	0	0	78	28	26.4151
ABCC12	0	genome.wustl.edu	37	16	48122497	48122497	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	48122497	48122497	T	G	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.3434	p.Q1145P	0.541	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798				113	0	0	57	30	34.4828
ABCC11	0	genome.wustl.edu	37	16	48226615	48226615	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	48226615	48226615	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.2522	p.R841Q	0.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				127	0	0	57	32	35.9551
ABCC11	0	genome.wustl.edu	37	16	48249223	48249223	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	48249223	48249223	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	silent	c.984	p.Q328	0.001	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				103	0	0	65	38	36.8932
ABCC11	0	genome.wustl.edu	37	16	48265757	48265757	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	48265757	48265757	C	A	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.76	p.D26Y	0.928	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				179	0	0	106	63	37.2781
LONP2	0	genome.wustl.edu	37	16	48381506	48381506	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	48381506	48381506	G	A	SNP	LONP2	ENST00000285737	human	ensembl	74_37	+1	known	missense	c.2027	p.R676Q	1.000	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP2	HGNC	ENSG00000102910				134	0	0	68	37	35.2381
ZNF423	0	genome.wustl.edu	37	16	49671572	49671572	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	49671572	49671572	C	T	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.1491	p.E497	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				103	0	0	57	27	32.1429
ZNF423	0	genome.wustl.edu	37	16	49671995	49671995	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	49671995	49671995	A	C	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.1068	p.S356R	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				50	0	0	27	9	25
ZNF423	0	genome.wustl.edu	37	16	49764857	49764857	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	49764857	49764857	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.102	p.C34	0.897	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				314	0	0	116	84	42
HEATR3	0	genome.wustl.edu	37	16	50104153	50104153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50104153	50104153	C	T	SNP	HEATR3	ENST00000299192	human	ensembl	74_37	+1	known	missense	c.464	p.S155F	0.243	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393				69	0	0	46	22	32.3529
HEATR3	0	genome.wustl.edu	37	16	50112911	50112911	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50112911	50112911	C	T	SNP	HEATR3	ENST00000299192	human	ensembl	74_37	+1	known	silent	c.1023	p.F341	0.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR3	HGNC	ENSG00000155393				87	0	0	79	37	31.8966
BRD7	0	genome.wustl.edu	37	16	50359754	50359754	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50359754	50359754	C	T	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	silent	c.1236	p.P412	0.712	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164				54	0	0	62	4	6.06061
BRD7	0	genome.wustl.edu	37	16	50384079	50384079	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50384079	50384079	C	A	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	splice_site	c.447-1	e5-1	1.000	-	-	-	no_errors	BRD7	HGNC	ENSG00000166164				54	0	0	34	23	40.3509
SNX20	0	genome.wustl.edu	37	16	50709814	50709814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50709814	50709814	C	T	SNP	SNX20	ENST00000330943	human	ensembl	74_37	-1	known	missense	c.149	p.S50N	0.928	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208				97	0	0	36	18	33.3333
NOD2	0	genome.wustl.edu	37	16	50759457	50759457	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50759457	50759457	G	T	SNP	NOD2	ENST00000300589	human	ensembl	74_37	+1	known	missense	c.2940	p.K980N	0.400	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD2	HGNC	ENSG00000167207				113	0	0	60	14	18.9189
CYLD	0	genome.wustl.edu	37	16	50784016	50784016	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	50784016	50784016	G	T	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	missense	c.407	p.R136I	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				151	0	0	96	50	34.2466
C16orf89	0	genome.wustl.edu	37	16	5105290	5105290	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	5105290	5105290	A	C	SNP	C16orf89	ENST00000350219	human	ensembl	74_37	-1	known	missense	c.939	p.I313M	0.994	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446				27	0	0	17	12	41.3793
SALL1	0	genome.wustl.edu	37	16	51173150	51173150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	51173150	51173150	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2983	p.R995W	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				134	0	0	70	28	28.5714
SALL1	0	genome.wustl.edu	37	16	51175943	51175943	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	51175943	51175943	T	C	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.190	p.N64D	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				196	0	0	133	27	16.875
CHD9	0	genome.wustl.edu	37	16	53190731	53190731	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	53190731	53190731	T	C	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.730	p.C244R	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200				119	1	0.833333	97	40	29.1971
RBL2	0	genome.wustl.edu	37	16	53504328	53504328	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	53504328	53504328	T	G	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	missense	c.2279	p.F760C	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				74	0	0	53	16	23.1884
AKTIP	0	genome.wustl.edu	37	16	53529195	53529195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	53529195	53529195	G	A	SNP	AKTIP	ENST00000300245	human	ensembl	74_37	-1	known	missense	c.292	p.P98S	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	AKTIP	HGNC	ENSG00000166971				80	0	0	33	15	31.25
IRX6	0	genome.wustl.edu	37	16	55363164	55363164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55363164	55363164	C	T	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	missense	c.1274	p.A425V	0.964	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				127	0	0	75	39	34.2105
LPCAT2	0	genome.wustl.edu	37	16	55562474	55562474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55562474	55562474	G	A	SNP	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	missense	c.497	p.R166Q	0.670	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253				135	0	0	90	43	32.3308
SLC6A2	0	genome.wustl.edu	37	16	55731866	55731866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55731866	55731866	C	T	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	nonsense	c.1318	p.R440*	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				142	0	0	79	28	26.1682
CES1	0	genome.wustl.edu	37	16	55844493	55844493	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55844493	55844493	G	T	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.1254	p.F418L	0.044	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				356	0	0	238	42	15
CES1	0	genome.wustl.edu	37	16	55855305	55855305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55855305	55855305	G	A	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.668	p.A223V	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				148	0	0	92	18	16.3636
CES5A	0	genome.wustl.edu	37	16	55886932	55886932	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55886932	55886932	C	T	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.1221	p.P407	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				122	0	0	52	21	28.7671
CES5A	0	genome.wustl.edu	37	16	55903558	55903558	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	55903558	55903558	G	A	SNP	CES5A	ENST00000521992	human	ensembl	74_37	-1	known	silent	c.603	p.V201	0.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES5A	HGNC	ENSG00000159398				49	0	0	26	11	29.7297
DKFZP434H168	0	genome.wustl.edu	37	16	56226635	56226635	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	56226635	56226635	C	T	SNP	DKFZP434H168	ENST00000567381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.747	-	-	-	no_errors	CTD-2050B12.2	Clone_based_vega_gene	ENSG00000261439				19	0	0	8	5	38.4615
BBS2	0	genome.wustl.edu	37	16	56534811	56534811	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	56534811	56534811	A	G	SNP	BBS2	ENST00000245157	human	ensembl	74_37	-1	known	missense	c.1352	p.V451A	1.000	pirsf_Bardet-Biedl_syndrome_2_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_2_prot	-	no_errors	BBS2	HGNC	ENSG00000125124				102	0	0	59	28	32.1839
MT1G	0	genome.wustl.edu	37	16	56700816	56700816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	56700816	56700816	G	A	SNP	MT1G	ENST00000379811	human	ensembl	74_37	-1	known	missense	c.164	p.S55L	0.026	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT1G	HGNC	ENSG00000125144				190	0	0	93	59	38.8158
ENSG00000259827	0	genome.wustl.edu	37	16	56721496	56721496	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	56721496	56721496	A	C	SNP	ENSG00000259827	ENST00000567563	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-343H19.2	Clone_based_vega_gene	ENSG00000259827				9	0	0	3	5	62.5
RAB11FIP3	0	genome.wustl.edu	37	16	570496	570496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	570496	570496	A	G	SNP	RAB11FIP3	ENST00000457159	human	ensembl	74_37	+1	known	missense	c.2189	p.N730S	0.999	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP3	HGNC	ENSG00000090565				180	0	0	79	40	33.6134
CPNE2	0	genome.wustl.edu	37	16	57180125	57180125	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57180125	57180125	C	T	SNP	CPNE2	ENST00000290776	human	ensembl	74_37	+1	known	silent	c.1431	p.F477	0.093	smart_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE2	HGNC	ENSG00000140848				11	0	0	4	2	33.3333
GPR114	0	genome.wustl.edu	37	16	57608945	57608945	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57608945	57608945	C	A	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	missense	c.1427	p.S476Y	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618				69	0	0	20	16	44.4444
GPR56	0	genome.wustl.edu	37	16	57684226	57684226	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57684226	57684226	G	A	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	silent	c.27	p.T9	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				124	0	0	64	26	28.8889
CCDC135	0	genome.wustl.edu	37	16	57735979	57735979	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57735979	57735979	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	silent	c.636	p.S212	0.002	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				132	0	0	64	41	39.0476
CCDC135	0	genome.wustl.edu	37	16	57741461	57741461	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57741461	57741461	G	T	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.948	p.E316D	1.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				82	0	0	38	13	25.4902
CCDC135	0	genome.wustl.edu	37	16	57762317	57762317	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57762317	57762317	G	A	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.2212	p.E738K	0.998	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				227	0	0	70	51	42.1488
CCDC135	0	genome.wustl.edu	37	16	57764845	57764845	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57764845	57764845	G	T	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.2394	p.E798D	1.000	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				123	0	0	74	13	14.9425
KATNB1	0	genome.wustl.edu	37	16	57789257	57789257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	57789257	57789257	G	A	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.1417	p.A473T	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				108	0	0	51	19	27.1429
C16orf80	0	genome.wustl.edu	37	16	58150852	58150852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58150852	58150852	G	A	SNP	C16orf80	ENST00000262498	human	ensembl	74_37	-1	known	missense	c.88	p.R30W	1.000	pfam_DUF667	pfam_DUF667	-	no_errors	C16orf80	HGNC	ENSG00000070761				77	0	0	43	14	24.5614
CSNK2A2	0	genome.wustl.edu	37	16	58220746	58220746	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58220746	58220746	C	A	SNP	CSNK2A2	ENST00000262506	human	ensembl	74_37	-1	known	missense	c.231	p.K77N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A2	HGNC	ENSG00000070770				97	0	0	78	37	32.1739
PRSS54	0	genome.wustl.edu	37	16	58320087	58320087	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58320087	58320087	G	A	SNP	PRSS54	ENST00000219301	human	ensembl	74_37	-1	known	silent	c.276	p.V92	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	-	no_errors	PRSS54	HGNC	ENSG00000103023				154	0	0	99	45	31.25
NDRG4	0	genome.wustl.edu	37	16	58538160	58538160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58538160	58538160	C	T	SNP	NDRG4	ENST00000394282	human	ensembl	74_37	+1	known	missense	c.386	p.A129V	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG4	HGNC	ENSG00000103034				225	0	0	92	54	36.9863
CNOT1	0	genome.wustl.edu	37	16	58581097	58581097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58581097	58581097	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.3743	p.R1248H	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				164	0	0	118	60	33.7079
CNOT1	0	genome.wustl.edu	37	16	58610407	58610407	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	58610407	58610407	G	T	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.1664	p.A555D	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107				94	0	0	53	25	32.0513
CDH8	0	genome.wustl.edu	37	16	61687875	61687875	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	61687875	61687875	A	C	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.2037	p.A679	0.998	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				219	0	0	127	60	32.0856
CDH8	0	genome.wustl.edu	37	16	61747770	61747770	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	61747770	61747770	C	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.1629	p.P543	0.934	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				72	0	0	40	18	31.0345
CDH8	0	genome.wustl.edu	37	16	61935262	61935262	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	61935262	61935262	C	A	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.368	p.R123I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				115	0	0	58	48	45.283
LINC00922	0	genome.wustl.edu	37	16	65319224	65319224	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	65319224	65319224	A	G	SNP	LINC00922	ENST00000564041	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00922	HGNC	ENSG00000261742				27	0	0	16	5	23.8095
DYNC1LI2	0	genome.wustl.edu	37	16	66764102	66764102	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66764102	66764102	C	A	SNP	DYNC1LI2	ENST00000258198	human	ensembl	74_37	-1	known	missense	c.954	p.K318N	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI2	HGNC	ENSG00000135720				58	0	0	41	11	21.1538
NAE1	0	genome.wustl.edu	37	16	66842448	66842448	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66842448	66842448	G	T	SNP	NAE1	ENST00000290810	human	ensembl	74_37	-1	known	missense	c.1306	p.H436N	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593				128	0	0	113	54	32.3353
NAE1	0	genome.wustl.edu	37	16	66844292	66844292	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66844292	66844292	C	A	SNP	NAE1	ENST00000290810	human	ensembl	74_37	-1	known	nonsense	c.1135	p.E379*	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	NAE1	HGNC	ENSG00000159593				96	0	0	65	37	36.2745
PDP2	0	genome.wustl.edu	37	16	66918406	66918406	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66918406	66918406	T	G	SNP	PDP2	ENST00000311765	human	ensembl	74_37	+1	known	missense	c.219	p.F73L	0.993	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP2	HGNC	ENSG00000172840				160	0	0	88	43	32.8244
CDH16	0	genome.wustl.edu	37	16	66943282	66943282	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66943282	66943282	G	A	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	silent	c.2280	p.I760	0.335	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				44	0	0	16	5	23.8095
CDH16	0	genome.wustl.edu	37	16	66946441	66946441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66946441	66946441	A	G	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	missense	c.1325	p.I442T	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				103	0	0	44	20	31.25
CDH16	0	genome.wustl.edu	37	16	66949216	66949216	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66949216	66949216	G	A	SNP	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	nonsense	c.490	p.R164*	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				111	0	0	46	17	26.9841
CES3	0	genome.wustl.edu	37	16	66998542	66998542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	66998542	66998542	C	T	SNP	CES3	ENST00000303334	human	ensembl	74_37	+1	known	missense	c.731	p.A244V	0.067	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828				179	0	0	89	47	34.5588
B3GNT9	0	genome.wustl.edu	37	16	67183690	67183690	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	67183690	67183690	G	A	SNP	B3GNT9	ENST00000449549	human	ensembl	74_37	-1	known	silent	c.699	p.F233	0.419	pfam_Glyco_trans_31,pfam_Fringe-like	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT9	HGNC	ENSG00000237172				41	0	0	16	12	42.8571
CTCF	0	genome.wustl.edu	37	16	67645910	67645910	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	67645910	67645910	A	C	SNP	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	missense	c.838	p.N280H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				149	0	0	116	13	10.0775
RLTPR	0	genome.wustl.edu	37	16	67681466	67681466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	67681466	67681466	C	T	SNP	RLTPR	ENST00000334583	human	ensembl	74_37	+1	known	missense	c.832	p.R278W	0.037	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RLTPR	HGNC	ENSG00000159753				22	0	0	14	6	30
ENSG00000263126	0	genome.wustl.edu	37	16	67918117	67918117	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	67918117	67918117	G	A	SNP	ENSG00000263126	ENST00000572067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	CTC-479C5.10	Clone_based_vega_gene	ENSG00000263126				10	0	0	4	3	42.8571
DUS2	0	genome.wustl.edu	37	16	68107995	68107995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68107995	68107995	G	A	SNP	DUS2	ENST00000358896	human	ensembl	74_37	+1	known	missense	c.869	p.R290Q	1.000	pfam_tRNA_hU_synthase	pfam_tRNA_hU_synthase,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom	-	no_errors	DUS2	HGNC	ENSG00000167264				102	0	0	37	20	35.0877
NFATC3	0	genome.wustl.edu	37	16	68156942	68156942	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68156942	68156942	G	T	SNP	NFATC3	ENST00000346183	human	ensembl	74_37	+1	known	missense	c.1156	p.D386Y	1.000	NULL	pfam_RHD,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC3	HGNC	ENSG00000072736				184	1	0.540541	110	46	29.4872
PRMT7	0	genome.wustl.edu	37	16	68381545	68381545	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68381545	68381545	C	T	SNP	PRMT7	ENST00000339507	human	ensembl	74_37	+1	known	silent	c.1287	p.V429	0.024	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600				79	0	0	33	22	40
PRMT7	0	genome.wustl.edu	37	16	68387404	68387404	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68387404	68387404	C	T	SNP	PRMT7	ENST00000339507	human	ensembl	74_37	+1	known	missense	c.1585	p.R529W	1.000	pirsf_Arg_MeTrfase_PRMT7	pfam_Ribosomal-L11_MeTrfase_PrmA,pirsf_Arg_MeTrfase_PRMT7	-	no_errors	PRMT7	HGNC	ENSG00000132600				119	1	0.833333	56	20	26.3158
SMPD3	0	genome.wustl.edu	37	16	68404923	68404923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68404923	68404923	C	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.1162	p.D388N	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				83	0	0	27	10	27.027
ZFP90	0	genome.wustl.edu	37	16	68597611	68597611	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	68597611	68597611	G	T	SNP	ZFP90	ENST00000398253	human	ensembl	74_37	+1	known	missense	c.921	p.E307D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP90	HGNC	ENSG00000184939				90	0	0	55	34	38.2022
COG8	0	genome.wustl.edu	37	16	69368645	69368645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	69368645	69368645	T	G	SNP	COG8	ENST00000306875	human	ensembl	74_37	-1	known	missense	c.1192	p.M398L	1.000	pirsf_COG8_Metazoal_Plant	pfam_COG8,superfamily_Cullin_repeat-like_dom,pirsf_COG8_Metazoal_Plant	-	no_errors	COG8	HGNC	ENSG00000213380				121	0	0	91	5	5.20833
PDPR	0	genome.wustl.edu	37	16	70177526	70177526	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	70177526	70177526	A	C	SNP	PDPR	ENST00000288050	human	ensembl	74_37	+1	known	missense	c.1719	p.E573D	0.977	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C,pfam_FAD_bind_dom	-	no_errors	PDPR	HGNC	ENSG00000090857				45	0	0	27	8	22.8571
LOC100506083	0	genome.wustl.edu	37	16	70349759	70349759	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	70349759	70349759	A	C	SNP	LOC100506083	ENST00000562077	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	RP11-529K1.2	Clone_based_vega_gene	ENSG00000261777				29	0	0	27	11	28.9474
SF3B3	0	genome.wustl.edu	37	16	70572358	70572358	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	70572358	70572358	G	T	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.958	p.D320Y	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				123	0	0	84	51	37.7778
IL34	0	genome.wustl.edu	37	16	70688478	70688478	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	70688478	70688478	G	A	SNP	IL34	ENST00000288098	human	ensembl	74_37	+1	known	silent	c.66	p.E22	0.164	NULL	prints_IL-34	-	no_errors	IL34	HGNC	ENSG00000157368				162	0	0	60	28	31.8182
HYDIN	0	genome.wustl.edu	37	16	70993581	70993581	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	70993581	70993581	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	silent	c.6111	p.I2037	0.997	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				70	0	0	40	18	31.0345
HYDIN	0	genome.wustl.edu	37	16	71009055	71009055	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71009055	71009055	G	A	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.4756	p.R1586C	0.000	NULL	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				10	0	0	5	5	50
HYDIN	0	genome.wustl.edu	37	16	71025987	71025987	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71025987	71025987	T	C	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	silent	c.3627	p.L1209	0.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				97	0	0	52	25	32.4675
HYDIN	0	genome.wustl.edu	37	16	71209538	71209538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71209538	71209538	C	T	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				101	0	0	52	28	35
HYDIN	0	genome.wustl.edu	37	16	71212926	71212926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71212926	71212926	C	T	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.286	p.A96T	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				85	0	0	58	24	29.2683
CMTR2	0	genome.wustl.edu	37	16	71318614	71318614	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71318614	71318614	A	C	SNP	CMTR2	ENST00000338099	human	ensembl	74_37	-1	known	missense	c.1210	p.F404V	0.998	NULL	pfam_rRNA_MeTrfase_FtsJ_dom	-	no_errors	CMTR2	HGNC	ENSG00000180917				30	0	0	23	13	36.1111
CALB2	0	genome.wustl.edu	37	16	71408706	71408706	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71408706	71408706	A	C	SNP	CALB2	ENST00000302628	human	ensembl	74_37	+1	known	missense	c.230	p.K77T	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB2	HGNC	ENSG00000172137				64	0	0	28	17	37.7778
CALB2	0	genome.wustl.edu	37	16	71423745	71423745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71423745	71423745	C	T	SNP	CALB2	ENST00000302628	human	ensembl	74_37	+1	known	missense	c.793	p.L265F	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB2	HGNC	ENSG00000172137				212	0	0	85	40	32
TAT	0	genome.wustl.edu	37	16	71606212	71606212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71606212	71606212	C	T	SNP	TAT	ENST00000355962	human	ensembl	74_37	-1	known	missense	c.583	p.E195K	1.000	pfam_Aminotransferase_I/II,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase	-	no_errors	TAT	HGNC	ENSG00000198650				98	0	0	53	27	33.75
AP1G1	0	genome.wustl.edu	37	16	71805084	71805084	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	71805084	71805084	T	G	SNP	AP1G1	ENST00000433195	human	ensembl	74_37	-1	known	missense	c.609	p.K203N	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G1	HGNC	ENSG00000166747				39	0	0	30	24	44.4444
DHODH	0	genome.wustl.edu	37	16	72045994	72045994	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	72045994	72045994	C	A	SNP	DHODH	ENST00000219240	human	ensembl	74_37	+1	known	missense	c.67	p.L23I	0.686	NULL	pfam_Dihydroorotate_DH_1_2,pirsf_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH_2	-	no_errors	DHODH	HGNC	ENSG00000102967				155	0	0	100	38	27.5362
ZFHX3	0	genome.wustl.edu	37	16	72829629	72829629	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	72829629	72829629	C	T	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	missense	c.6952	p.D2318N	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				308	0	0	114	81	41.5385
NPIPB15	0	genome.wustl.edu	37	16	74419325	74419325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	74419325	74419325	G	A	SNP	NPIPB15	ENST00000429990	human	ensembl	74_37	+1	known	missense	c.335	p.R112H	0.001	NULL	NULL	-	no_errors	NPIPB15	HGNC	ENSG00000196436				86	0	0	59	11	15.7143
GABARAPL2	0	genome.wustl.edu	37	16	75611253	75611253	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	75611253	75611253	A	C	SNP	GABARAPL2	ENST00000037243	human	ensembl	74_37	+1	known	missense	c.340	p.T114P	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL2	HGNC	ENSG00000034713				107	0	0	71	26	26.8041
CNTNAP4	0	genome.wustl.edu	37	16	76350318	76350318	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	76350318	76350318	G	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.91	p.D31N	1.000	superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				39	0	0	26	6	18.75
CNTNAP4	0	genome.wustl.edu	37	16	76461353	76461353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	76461353	76461353	T	G	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.392	p.F131C	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				176	0	0	111	41	26.9737
ADAMTS18	0	genome.wustl.edu	37	16	77334283	77334283	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	77334283	77334283	T	C	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2551	p.N851D	1.000	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				93	0	0	59	35	37.234
ADAMTS18	0	genome.wustl.edu	37	16	77396073	77396073	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	77396073	77396073	C	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.1145	p.R382I	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				62	0	0	43	19	30.6452
RBFOX1	0	genome.wustl.edu	37	16	7759064	7759064	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	7759064	7759064	A	G	SNP	RBFOX1	ENST00000547372	human	ensembl	74_37	+1	known	missense	c.1184	p.D395G	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				126	0	0	61	26	29.8851
NARFL	0	genome.wustl.edu	37	16	780269	780269	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	780269	780269	C	T	SNP	NARFL	ENST00000562862	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NARFL	HGNC	ENSG00000103245				25	0	0	9	8	47.0588
CLEC3A	0	genome.wustl.edu	37	16	78064634	78064634	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	78064634	78064634	C	T	SNP	CLEC3A	ENST00000299642	human	ensembl	74_37	+1	known	nonsense	c.517	p.R173*	0.995	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC3A	HGNC	ENSG00000166509				139	0	0	78	38	32.7586
CDYL2	0	genome.wustl.edu	37	16	80718445	80718445	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	80718445	80718445	C	A	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	missense	c.606	p.E202D	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446				108	0	0	56	28	33.3333
CENPN	0	genome.wustl.edu	37	16	81053750	81053750	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81053750	81053750	C	T	SNP	CENPN	ENST00000299572	human	ensembl	74_37	+1	known	nonsense	c.400	p.R134*	1.000	pfam_Chl4/mis15/CENP-N	pfam_Chl4/mis15/CENP-N	-	no_errors	CENPN	HGNC	ENSG00000166451				70	0	0	35	13	27.0833
ATMIN	0	genome.wustl.edu	37	16	81077066	81077066	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81077066	81077066	C	T	SNP	ATMIN	ENST00000299575	human	ensembl	74_37	+1	known	silent	c.963	p.A321	0.027	NULL	smart_Znf_C2H2-like	-	no_errors	ATMIN	HGNC	ENSG00000166454				180	0	0	89	58	39.4558
C16orf46	0	genome.wustl.edu	37	16	81097524	81097524	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81097524	81097524	T	G	SNP	C16orf46	ENST00000299578	human	ensembl	74_37	-1	known	missense	c.37	p.N13H	0.437	NULL	NULL	-	no_errors	C16orf46	HGNC	ENSG00000166455				83	0	0	69	31	31
PKD1L2	0	genome.wustl.edu	37	16	81213297	81213297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81213297	81213297	C	T	SNP	PKD1L2	ENST00000337114	human	ensembl	74_37	-1	known	missense	c.2213	p.S738N	0.572	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_Lectin_gal-bd_dom,pfam_C-type_lectin,pfam_PKD/REJ-like,superfamily_C-type_lectin_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_PKD_dom,smart_C-type_lectin,pfscan_C-type_lectin,pfscan_Lectin_gal-bd_dom,pfscan_REJ-like	-	no_errors	PKD1L2	HGNC	ENSG00000166473				87	0	0	40	23	36.5079
CMIP	0	genome.wustl.edu	37	16	81685954	81685954	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81685954	81685954	G	A	SNP	CMIP	ENST00000537098	human	ensembl	74_37	+1	known	silent	c.624	p.S208	0.655	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815				83	0	0	59	5	7.8125
PLCG2	0	genome.wustl.edu	37	16	81934292	81934292	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81934292	81934292	A	C	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.1269	p.E423D	0.579	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pirsf_PLC-gamma,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				72	0	0	24	16	40
PLCG2	0	genome.wustl.edu	37	16	81944184	81944184	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	81944184	81944184	A	C	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.1793	p.K598T	1.000	pfam_SH2,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				276	0	0	174	32	15.534
MSLNL	0	genome.wustl.edu	37	16	823249	823249	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	823249	823249	G	A	SNP	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	silent	c.2019	p.Y673	0.896	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				100	1	0.990099	54	18	25
MSLNL	0	genome.wustl.edu	37	16	832053	832053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	832053	832053	G	A	SNP	MSLNL	ENST00000293892	human	ensembl	74_37	-1	known	missense	c.70	p.P24S	0.093	NULL	pfam_Mesothelin	-	no_errors	MSLNL	HGNC	ENSG00000162006				10	0	0	8	3	27.2727
NECAB2	0	genome.wustl.edu	37	16	84031879	84031879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	84031879	84031879	C	T	SNP	NECAB2	ENST00000305202	human	ensembl	74_37	+1	known	missense	c.919	p.R307C	0.999	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NECAB2	HGNC	ENSG00000103154				53	0	0	30	14	31.8182
HSDL1	0	genome.wustl.edu	37	16	84164808	84164808	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	84164808	84164808	A	G	SNP	HSDL1	ENST00000219439	human	ensembl	74_37	-1	known	missense	c.119	p.V40A	0.229	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSDL1	HGNC	ENSG00000103160				179	0	0	112	40	26.3158
USP10	0	genome.wustl.edu	37	16	84792352	84792352	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	84792352	84792352	A	C	SNP	USP10	ENST00000570191	human	ensembl	74_37	+1	known	missense	c.1235	p.K412T	1.000	NULL	pfam_Peptidase_C19/C67,pfam_Ataxin-2_C,pfscan_Peptidase_C19/C67	-	no_errors	USP10	HGNC	ENSG00000103194				156	0	0	75	43	36.4407
CRISPLD2	0	genome.wustl.edu	37	16	84879404	84879404	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	84879404	84879404	G	A	SNP	CRISPLD2	ENST00000262424	human	ensembl	74_37	+1	known	missense	c.253	p.E85K	1.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196				122	0	0	56	32	36.3636
JPH3	0	genome.wustl.edu	37	16	87636725	87636725	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	87636725	87636725	T	C	SNP	JPH3	ENST00000301008	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	JPH3	HGNC	ENSG00000154118				107	0	0	34	24	41.3793
JPH3	0	genome.wustl.edu	37	16	87723916	87723916	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	87723916	87723916	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	silent	c.1950	p.F650	0.913	pirsf_Junctophilin	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				14	0	0	5	4	44.4444
SLC7A5	0	genome.wustl.edu	37	16	87902728	87902728	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	87902728	87902728	G	A	SNP	SLC7A5	ENST00000261622	human	ensembl	74_37	-1	known	missense	c.301	p.L101F	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1,tigrfam_L_AA_transporter	-	no_errors	SLC7A5	HGNC	ENSG00000103257				67	0	0	32	29	47.541
ENSG00000260603	0	genome.wustl.edu	37	16	87927185	87927185	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	87927185	87927185	G	A	SNP	ENSG00000260603	ENST00000562644	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	GS1-21A4.1	Clone_based_vega_gene	ENSG00000260603				98	0	0	46	23	33.3333
CBFA2T3	0	genome.wustl.edu	37	16	88958681	88958681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	88958681	88958681	G	A	SNP	CBFA2T3	ENST00000268679	human	ensembl	74_37	-1	known	missense	c.592	p.R198C	0.997	pfam_TAFH_NHR1,smart_TAFH_NHR1,pfscan_TAFH_NHR1	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG16	-	no_errors	CBFA2T3	HGNC	ENSG00000129993				85	0	0	40	16	28.5714
CDH15	0	genome.wustl.edu	37	16	89250017	89250017	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	89250017	89250017	T	G	SNP	CDH15	ENST00000289746	human	ensembl	74_37	+1	known	missense	c.419	p.I140S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH15	HGNC	ENSG00000129910				53	0	0	19	13	40.625
ANKRD11	0	genome.wustl.edu	37	16	89348754	89348754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	89348754	89348754	G	A	SNP	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	missense	c.4196	p.A1399V	0.017	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522				195	0	0	96	52	35.1351
VPS9D1	0	genome.wustl.edu	37	16	89776282	89776282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	89776282	89776282	C	T	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.1291	p.E431K	0.998	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				205	0	0	96	50	34.2466
USP7	0	genome.wustl.edu	37	16	8988445	8988445	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	8988445	8988445	T	G	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.3164	p.E1055A	1.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				80	0	0	37	28	43.0769
USP7	0	genome.wustl.edu	37	16	9000408	9000408	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	9000408	9000408	C	A	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	nonsense	c.1303	p.E435*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555				80	0	0	38	17	30.9091
DEF8	0	genome.wustl.edu	37	16	90016033	90016033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	90016033	90016033	A	G	SNP	DEF8	ENST00000268676	human	ensembl	74_37	+1	known	missense	c.160	p.T54A	0.000	NULL	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DEF8	HGNC	ENSG00000140995				92	0	0	41	22	34.9206
C16orf72	0	genome.wustl.edu	37	16	9196898	9196898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	9196898	9196898	G	A	SNP	C16orf72	ENST00000327827	human	ensembl	74_37	+1	known	missense	c.365	p.R122Q	1.000	NULL	NULL	-	no_errors	C16orf72	HGNC	ENSG00000182831				128	0	0	65	33	33.6735
GRIN2A	0	genome.wustl.edu	37	16	9916169	9916169	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	9916169	9916169	T	G	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.2120	p.K707T	0.994	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				129	0	0	66	41	38.3178
MYH13	0	genome.wustl.edu	37	17	10210275	10210275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10210275	10210275	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.5276	p.A1759V	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				120	0	0	54	27	33.3333
MYH13	0	genome.wustl.edu	37	17	10227375	10227375	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10227375	10227375	C	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.2898	p.T966	0.006	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				77	0	0	34	19	35.8491
MYH8	0	genome.wustl.edu	37	17	10297697	10297697	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10297697	10297697	G	A	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.5035	p.R1679C	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				113	0	0	67	25	27.1739
MYH8	0	genome.wustl.edu	37	17	10312471	10312471	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10312471	10312471	C	T	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	silent	c.1908	p.A636	0.808	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				68	0	0	52	15	22.3881
MYH4	0	genome.wustl.edu	37	17	10357945	10357945	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10357945	10357945	T	G	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.2618	p.K873T	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				165	0	0	99	46	31.7241
MYH1	0	genome.wustl.edu	37	17	10402034	10402034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10402034	10402034	C	T	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	missense	c.4090	p.A1364T	0.926	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				158	0	0	98	68	40.9639
MYH1	0	genome.wustl.edu	37	17	10405120	10405120	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10405120	10405120	C	A	SNP	MYH1	ENST00000226207	human	ensembl	74_37	-1	known	nonsense	c.3220	p.E1074*	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH1	HGNC	ENSG00000109061				37	0	0	26	14	35
MYH2	0	genome.wustl.edu	37	17	10428901	10428901	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10428901	10428901	T	G	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.4404	p.E1468D	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				99	0	0	56	33	37.0787
MYH2	0	genome.wustl.edu	37	17	10429120	10429120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10429120	10429120	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.4261	p.E1421K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				120	1	0.826446	74	36	32.7273
MYH2	0	genome.wustl.edu	37	17	10447032	10447032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10447032	10447032	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.737	p.R246H	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				119	0	0	62	27	30.3371
MYH2	0	genome.wustl.edu	37	17	10447416	10447416	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10447416	10447416	C	T	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	splice_site	c.533+1	e4+1	1.000	-	-	-	no_errors	MYH2	HGNC	ENSG00000125414				97	0	0	46	19	29.2308
MYH3	0	genome.wustl.edu	37	17	10541674	10541674	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10541674	10541674	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.3415	p.D1139N	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				83	0	0	42	16	27.5862
MYH3	0	genome.wustl.edu	37	17	10549159	10549159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10549159	10549159	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.1006	p.A336T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				143	0	0	71	22	23.6559
MYH3	0	genome.wustl.edu	37	17	10550506	10550506	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	10550506	10550506	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	silent	c.891	p.E297	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				131	0	0	75	36	32.4324
DNAH9	0	genome.wustl.edu	37	17	11622691	11622691	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11622691	11622691	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.5593	p.S1865G	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				84	0	0	47	28	37.3333
DNAH9	0	genome.wustl.edu	37	17	11660968	11660968	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11660968	11660968	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.6954	p.F2318	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				66	0	0	59	16	21.3333
DNAH9	0	genome.wustl.edu	37	17	11806042	11806042	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11806042	11806042	T	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.11413	p.S3805A	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				144	0	0	67	46	40.708
DNAH9	0	genome.wustl.edu	37	17	11837235	11837235	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11837235	11837235	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.12336	p.I4112	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				121	0	0	59	29	32.9545
DNAH9	0	genome.wustl.edu	37	17	11840674	11840674	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11840674	11840674	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.12495	p.I4165	0.542	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				177	0	0	90	47	34.3066
ZNF18	0	genome.wustl.edu	37	17	11881837	11881837	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	11881837	11881837	C	A	SNP	ZNF18	ENST00000322748	human	ensembl	74_37	-1	known	nonsense	c.1087	p.E363*	0.189	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF18	HGNC	ENSG00000154957				279	0	0	142	79	35.7466
CDRT1	0	genome.wustl.edu	37	17	15522795	15522795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	15522795	15522795	G	A	SNP	CDRT1	ENST00000395906	human	ensembl	74_37	-1	known	missense	c.32	p.A11V	0.115	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	CDRT1	HGNC	ENSG00000241322				520	0	0	345	98	22.1219
ZNF286A	0	genome.wustl.edu	37	17	15620159	15620159	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	15620159	15620159	G	T	SNP	ZNF286A	ENST00000413242	human	ensembl	74_37	+1	known	missense	c.1121	p.R374I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF286A	HGNC	ENSG00000255104				39	0	0	31	12	27.907
ZNF286A	0	genome.wustl.edu	37	17	15620583	15620583	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	15620583	15620583	T	G	SNP	ZNF286A	ENST00000413242	human	ensembl	74_37	+1	known	silent	c.1545	p.V515	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF286A	HGNC	ENSG00000255104				41	0	0	19	17	47.2222
TTC19	0	genome.wustl.edu	37	17	15928385	15928385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	15928385	15928385	C	T	SNP	TTC19	ENST00000486880	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	0.978	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC19	HGNC	ENSG00000011295				101	0	0	56	32	36.3636
NCOR1	0	genome.wustl.edu	37	17	16041478	16041478	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	16041478	16041478	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.1401	p.E467	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				46	0	0	38	11	22.449
ZNF287	0	genome.wustl.edu	37	17	16455532	16455532	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	16455532	16455532	G	T	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	missense	c.1924	p.H642N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				80	0	0	52	26	33.3333
ZNF287	0	genome.wustl.edu	37	17	16467135	16467135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	16467135	16467135	G	A	SNP	ZNF287	ENST00000395824	human	ensembl	74_37	-1	known	missense	c.506	p.S169L	1.000	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF287	HGNC	ENSG00000141040				81	0	0	45	23	33.8235
ZNF624	0	genome.wustl.edu	37	17	16525654	16525654	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	16525654	16525654	G	A	SNP	ZNF624	ENST00000311331	human	ensembl	74_37	-1	known	missense	c.2546	p.S849L	0.985	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF624	HGNC	ENSG00000197566				145	0	0	102	52	33.7662
CCDC144A	0	genome.wustl.edu	37	17	16638008	16638008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	16638008	16638008	C	A	SNP	CCDC144A	ENST00000360524	human	ensembl	74_37	+1	known	missense	c.2423	p.S808Y	0.345	NULL	pfam_DUF3496	-	no_errors	CCDC144A	HGNC	ENSG00000170160				11	0	0	5	3	37.5
RASD1	0	genome.wustl.edu	37	17	17398896	17398896	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	17398896	17398896	T	C	SNP	RASD1	ENST00000225688	human	ensembl	74_37	-1	known	missense	c.389	p.N130S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD1	HGNC	ENSG00000108551				43	0	0	12	7	36.8421
DRG2	0	genome.wustl.edu	37	17	18003967	18003967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18003967	18003967	G	A	SNP	DRG2	ENST00000225729	human	ensembl	74_37	+1	known	missense	c.625	p.E209K	1.000	superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG2	HGNC	ENSG00000108591				43	0	0	17	9	34.6154
MYO15A	0	genome.wustl.edu	37	17	18027810	18027810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18027810	18027810	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.3623	p.R1208H	1.000	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				62	0	0	26	9	25.7143
MYO15A	0	genome.wustl.edu	37	17	18036584	18036584	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18036584	18036584	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.4366	p.R1456C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				70	0	0	42	19	31.1475
USP32P2	0	genome.wustl.edu	37	17	18416730	18416730	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18416730	18416730	G	T	SNP	USP32P2	ENST00000412260	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P2	HGNC	ENSG00000233327				114	0	0	57	34	37.3626
ZNF286B	0	genome.wustl.edu	37	17	18565271	18565271	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18565271	18565271	A	C	SNP	ZNF286B	ENST00000545289	human	ensembl	74_37	-1	known	silent	c.1548	p.V516	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF286B	HGNC	ENSG00000249459				106	0	0	96	8	7.69231
FBXW10	0	genome.wustl.edu	37	17	18653227	18653227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18653227	18653227	A	G	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.863	p.Y288C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				234	0	0	136	33	19.5266
FBXW10	0	genome.wustl.edu	37	17	18653257	18653257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18653257	18653257	G	A	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.893	p.G298E	0.001	superfamily_F-box_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				187	0	0	101	36	26.2774
FBXW10	0	genome.wustl.edu	37	17	18668094	18668094	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18668094	18668094	C	T	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	silent	c.1560	p.F520	0.986	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				131	0	0	64	20	23.8095
FBXW10	0	genome.wustl.edu	37	17	18681858	18681858	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18681858	18681858	G	T	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	missense	c.2433	p.K811N	0.082	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931				62	0	0	33	16	32.6531
SLC5A10	0	genome.wustl.edu	37	17	18862465	18862465	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	18862465	18862465	C	T	SNP	SLC5A10	ENST00000395647	human	ensembl	74_37	+1	known	silent	c.201	p.F67	0.990	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A10	HGNC	ENSG00000154025				88	0	0	28	12	30
EPN2	0	genome.wustl.edu	37	17	19186779	19186779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	19186779	19186779	G	A	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	missense	c.347	p.G116D	1.000	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				110	0	0	56	35	38.4615
RNF112	0	genome.wustl.edu	37	17	19316718	19316718	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	19316718	19316718	G	A	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	silent	c.714	p.G238	1.000	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				44	0	0	15	11	42.3077
SLC47A1	0	genome.wustl.edu	37	17	19451350	19451350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	19451350	19451350	C	T	SNP	SLC47A1	ENST00000395585	human	ensembl	74_37	+1	known	missense	c.359	p.A120V	0.002	pfam_MATE,tigrfam_MATE	pfam_MATE,tigrfam_MATE	-	no_errors	SLC47A1	HGNC	ENSG00000142494				120	0	0	54	30	35.7143
HIC1	0	genome.wustl.edu	37	17	1960258	1960258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	1960258	1960258	G	A	SNP	HIC1	ENST00000322941	human	ensembl	74_37	+1	known	missense	c.331	p.E111K	0.808	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC1	HGNC	ENSG00000177374				39	0	0	17	6	26.087
ALDH3A1	0	genome.wustl.edu	37	17	19641726	19641726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	19641726	19641726	G	A	SNP	ALDH3A1	ENST00000468746	human	ensembl	74_37	-1	known	missense	c.1157	p.S386L	0.996	NULL	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3A1	HGNC	ENSG00000108602				190	0	0	88	46	34.3284
AKAP10	0	genome.wustl.edu	37	17	19839708	19839708	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	19839708	19839708	A	C	SNP	AKAP10	ENST00000225737	human	ensembl	74_37	-1	known	missense	c.1358	p.F453C	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	AKAP10	HGNC	ENSG00000108599				55	0	0	23	17	42.5
CCDC144CP	0	genome.wustl.edu	37	17	20224924	20224924	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	20224924	20224924	G	A	SNP	CCDC144CP	ENST00000340196	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC144CP	HGNC	ENSG00000154898				386	0	0	204	104	33.7662
LGALS9B	0	genome.wustl.edu	37	17	20354903	20354903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	20354903	20354903	C	T	SNP	LGALS9B	ENST00000423676	human	ensembl	74_37	-1	known	missense	c.815	p.R272H	0.881	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS9B	HGNC	ENSG00000170298				157	0	0	74	32	30.1887
DHRS7B	0	genome.wustl.edu	37	17	21094443	21094443	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	21094443	21094443	G	T	SNP	DHRS7B	ENST00000395511	human	ensembl	74_37	+1	known	nonsense	c.955	p.E319*	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_DUF1776_fun,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7B	HGNC	ENSG00000109016				210	0	0	93	32	25.6
TMEM11	0	genome.wustl.edu	37	17	21101654	21101654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	21101654	21101654	C	T	SNP	TMEM11	ENST00000317635	human	ensembl	74_37	-1	known	missense	c.562	p.E188K	1.000	NULL	NULL	-	no_errors	TMEM11	HGNC	ENSG00000178307				226	1	0.440529	112	51	31.2883
KCNJ12	0	genome.wustl.edu	37	17	21319340	21319340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	21319340	21319340	G	A	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.686	p.R229H	0.983	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				108	0	0	81	8	8.98876
SMG6	0	genome.wustl.edu	37	17	2201202	2201202	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	2201202	2201202	C	T	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	silent	c.1995	p.E665	0.995	pfam_EST1	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366				150	0	0	88	43	32.8244
TSR1	0	genome.wustl.edu	37	17	2239404	2239404	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	2239404	2239404	T	G	SNP	TSR1	ENST00000301364	human	ensembl	74_37	-1	known	missense	c.128	p.K43T	0.997	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721				139	0	0	83	10	10.7527
PAFAH1B1	0	genome.wustl.edu	37	17	2570370	2570370	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	2570370	2570370	G	T	SNP	PAFAH1B1	ENST00000397195	human	ensembl	74_37	+1	known	nonsense	c.277	p.E93*	1.000	pirsf_Dynein_regulator_LIS1	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pirsf_Dynein_regulator_LIS1,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAFAH1B1	HGNC	ENSG00000007168				95	0	0	53	28	34.5679
KSR1	0	genome.wustl.edu	37	17	25877595	25877595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	25877595	25877595	C	T	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	missense	c.233	p.A78V	0.996	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				238	0	0	108	57	34.5455
POLDIP2	0	genome.wustl.edu	37	17	26676190	26676190	+	Splice_Site	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	26676190	26676190	T	G	SNP	POLDIP2	ENST00000540200	human	ensembl	74_37	-1	known	splice_site	c.910-2	e11-2	1.000	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142				29	0	0	20	11	35.4839
SLC46A1	0	genome.wustl.edu	37	17	26731978	26731978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	26731978	26731978	C	T	SNP	SLC46A1	ENST00000440501	human	ensembl	74_37	-1	known	missense	c.737	p.R246H	0.120	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC46A1	HGNC	ENSG00000076351				181	1	0.549451	95	48	33.5664
RAB34	0	genome.wustl.edu	37	17	27041904	27041904	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	27041904	27041904	C	A	SNP	RAB34	ENST00000447716	human	ensembl	74_37	-1	known	nonsense	c.790	p.E264*	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB34	HGNC	ENSG00000109113				113	0	0	67	27	28.7234
PHF12	0	genome.wustl.edu	37	17	27239795	27239795	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	27239795	27239795	G	A	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	silent	c.1794	p.V598	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				130	0	0	60	24	28.5714
MYO18A	0	genome.wustl.edu	37	17	27493497	27493497	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	27493497	27493497	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	silent	c.462	p.S154	0.913	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				48	0	0	22	10	31.25
CRYBA1	0	genome.wustl.edu	37	17	27581350	27581350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	27581350	27581350	C	T	SNP	CRYBA1	ENST00000225387	human	ensembl	74_37	+1	known	missense	c.631	p.R211C	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBA1	HGNC	ENSG00000108255				156	0	0	107	58	35.1515
GIT1	0	genome.wustl.edu	37	17	27906001	27906001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	27906001	27906001	C	T	SNP	GIT1	ENST00000394869	human	ensembl	74_37	-1	known	missense	c.767	p.R256Q	1.000	NULL	pfam_GIT1_C,pfam_GIT_SHD,pfam_ArfGAP,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_ArfGAP,smart_Ankyrin_rpt,smart_GIT_SHD,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	GIT1	HGNC	ENSG00000108262				235	0	0	96	49	33.7931
EFCAB5	0	genome.wustl.edu	37	17	28405430	28405430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	28405430	28405430	C	T	SNP	EFCAB5	ENST00000394835	human	ensembl	74_37	+1	known	missense	c.2935	p.R979W	0.567	NULL	pfscan_EF_hand_dom	-	no_errors	EFCAB5	HGNC	ENSG00000176927				128	0	0	66	34	34
SLC6A4	0	genome.wustl.edu	37	17	28545146	28545146	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	28545146	28545146	C	A	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	nonsense	c.688	p.E230*	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				80	0	0	39	23	37.0968
CPD	0	genome.wustl.edu	37	17	28769342	28769342	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	28769342	28769342	G	A	SNP	CPD	ENST00000225719	human	ensembl	74_37	+1	known	nonsense	c.2247	p.W749*	1.000	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPD	HGNC	ENSG00000108582				74	0	0	69	34	33.0097
LRRC37BP1	0	genome.wustl.edu	37	17	28959165	28959165	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	28959165	28959165	G	A	SNP	LRRC37BP1	ENST00000417404	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	LRRC37BP1	HGNC	ENSG00000250462				32	0	0	27	8	22.8571
NF1	0	genome.wustl.edu	37	17	29541481	29541481	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	29541481	29541481	A	C	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.1405	p.K469Q	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				35	0	0	29	20	40.8163
NF1	0	genome.wustl.edu	37	17	29685995	29685995	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	29685995	29685995	T	G	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.8122	p.F2708V	1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				57	0	0	35	15	30
RAB11FIP4	0	genome.wustl.edu	37	17	29854863	29854863	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	29854863	29854863	G	A	SNP	RAB11FIP4	ENST00000325874	human	ensembl	74_37	+1	known	silent	c.1278	p.V426	0.998	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242				16	0	0	10	4	28.5714
SUZ12	0	genome.wustl.edu	37	17	30303573	30303573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	30303573	30303573	G	A	SNP	SUZ12	ENST00000322652	human	ensembl	74_37	+1	known	missense	c.857	p.R286Q	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691				59	0	0	46	29	38.6667
OR1G1	0	genome.wustl.edu	37	17	3030537	3030537	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3030537	3030537	A	C	SNP	OR1G1	ENST00000328890	human	ensembl	74_37	-1	known	missense	c.309	p.F103L	0.400	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1G1	HGNC	ENSG00000183024				107	0	0	55	34	38.2022
C17orf75	0	genome.wustl.edu	37	17	30661574	30661574	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	30661574	30661574	G	T	SNP	C17orf75	ENST00000225805	human	ensembl	74_37	-1	known	missense	c.785	p.T262N	0.998	NULL	NULL	-	no_errors	C17orf75	HGNC	ENSG00000108666				37	0	0	16	21	56.7568
ZNF207	0	genome.wustl.edu	37	17	30678857	30678857	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	30678857	30678857	G	T	SNP	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	missense	c.94	p.A32S	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				78	0	0	94	25	21.0084
OR1A2	0	genome.wustl.edu	37	17	3101260	3101260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3101260	3101260	G	A	SNP	OR1A2	ENST00000381951	human	ensembl	74_37	+1	known	missense	c.448	p.V150M	0.816	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150				146	0	0	72	54	42.8571
MYO1D	0	genome.wustl.edu	37	17	31092067	31092067	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	31092067	31092067	C	T	SNP	MYO1D	ENST00000318217	human	ensembl	74_37	-1	known	silent	c.864	p.T288	0.475	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1D	HGNC	ENSG00000176658				89	0	0	51	16	23.8806
OR3A1	0	genome.wustl.edu	37	17	3195189	3195189	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3195189	3195189	G	A	SNP	OR3A1	ENST00000323404	human	ensembl	74_37	-1	known	nonsense	c.688	p.R230*	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090				130	0	0	80	42	34.4262
OR3A1	0	genome.wustl.edu	37	17	3195809	3195809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3195809	3195809	G	A	SNP	OR3A1	ENST00000323404	human	ensembl	74_37	-1	known	missense	c.68	p.A23V	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR3A1	HGNC	ENSG00000180090				119	0	0	60	36	37.5
CCL7	0	genome.wustl.edu	37	17	32597283	32597283	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	32597283	32597283	T	C	SNP	CCL7	ENST00000200307	human	ensembl	74_37	+1	known	missense	c.4	p.W2R	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL7	HGNC	ENSG00000108688				63	0	0	42	17	28.8136
TMEM132E	0	genome.wustl.edu	37	17	32953302	32953302	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	32953302	32953302	G	A	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	missense	c.224	p.R75H	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291				26	0	0	10	4	28.5714
UNC45B	0	genome.wustl.edu	37	17	33513399	33513399	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	33513399	33513399	T	C	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	missense	c.2617	p.Y873H	1.000	superfamily_ARM-type_fold	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161				122	0	0	57	26	31.3253
SLC35G3	0	genome.wustl.edu	37	17	33521053	33521053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	33521053	33521053	C	T	SNP	SLC35G3	ENST00000297307	human	ensembl	74_37	-1	known	missense	c.274	p.D92N	0.994	pfam_DMT	pfam_DMT	-	no_errors	SLC35G3	HGNC	ENSG00000164729				350	1	0.2849	131	64	32.8205
SLFN11	0	genome.wustl.edu	37	17	33689883	33689883	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	33689883	33689883	A	G	SNP	SLFN11	ENST00000308377	human	ensembl	74_37	-1	known	missense	c.944	p.I315T	0.001	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN11	HGNC	ENSG00000172716				176	0	0	113	62	35.4286
SLFN12	0	genome.wustl.edu	37	17	33738393	33738393	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	33738393	33738393	A	G	SNP	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	silent	c.1701	p.D567	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				75	0	0	54	33	37.931
PEX12	0	genome.wustl.edu	37	17	33903184	33903184	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	33903184	33903184	T	G	SNP	PEX12	ENST00000225873	human	ensembl	74_37	-1	known	missense	c.697	p.N233H	0.986	pfam_Pex_N,pirsf_PEX12	pfam_Pex_N,pirsf_PEX12	-	no_errors	PEX12	HGNC	ENSG00000108733				97	0	0	65	28	30.1075
ENSG00000266999	0	genome.wustl.edu	37	17	34235884	34235884	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	34235884	34235884	A	C	SNP	ENSG00000266999	ENST00000587132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC015849.16	Clone_based_vega_gene	ENSG00000266999				88	0	0	67	9	11.8421
TRPV3	0	genome.wustl.edu	37	17	3436055	3436055	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3436055	3436055	A	G	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	missense	c.961	p.Y321H	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723				104	0	0	42	22	34.375
TRPV3	0	genome.wustl.edu	37	17	3436154	3436154	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3436154	3436154	C	T	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	missense	c.862	p.D288N	0.972	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723				86	0	0	50	19	27.5362
CCL4L1	0	genome.wustl.edu	37	17	34539886	34539886	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	34539886	34539886	T	G	SNP	CCL4L1	ENST00000444414	human	ensembl	74_37	+1	known	missense	c.194	p.F65C	1.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL4L1	HGNC	ENSG00000205020				68	0	0	9	30	76.9231
MYO19	0	genome.wustl.edu	37	17	34863332	34863332	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	34863332	34863332	C	T	SNP	MYO19	ENST00000431794	human	ensembl	74_37	-1	known	missense	c.1373	p.G458D	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO19	HGNC	ENSG00000141140				101	0	0	55	19	25.6757
LHX1	0	genome.wustl.edu	37	17	35299591	35299591	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	35299591	35299591	G	A	SNP	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	missense	c.770	p.R257Q	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				20	0	0	4	5	55.5556
AATF	0	genome.wustl.edu	37	17	35378259	35378259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	35378259	35378259	G	A	SNP	AATF	ENST00000225402	human	ensembl	74_37	+1	known	missense	c.1493	p.R498Q	1.000	pfam_AATF_C	pfam_AATF_C	-	no_errors	AATF	HGNC	ENSG00000108270				49	0	0	23	8	25.8065
ACACA	0	genome.wustl.edu	37	17	35550339	35550339	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	35550339	35550339	A	C	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.4176	p.F1392L	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				35	0	0	36	20	35.7143
SYNRG	0	genome.wustl.edu	37	17	35913722	35913722	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	35913722	35913722	A	C	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	silent	c.2103	p.S701	0.047	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114				121	0	0	57	34	37.3626
P2RX5	0	genome.wustl.edu	37	17	3593419	3593419	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3593419	3593419	C	A	SNP	P2RX5	ENST00000435558	human	ensembl	74_37	-1	known	missense	c.559	p.D187Y	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454				393	0	0	165	72	30.3797
P2RX5	0	genome.wustl.edu	37	17	3595070	3595070	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3595070	3595070	C	A	SNP	P2RX5	ENST00000435558	human	ensembl	74_37	-1	known	missense	c.156	p.K52N	1.000	pfam_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X_purnocptor,prints_P2X5_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX5	HGNC	ENSG00000083454				255	0	0	113	56	33.1361
GPR179	0	genome.wustl.edu	37	17	36484565	36484565	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	36484565	36484565	G	A	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	silent	c.4887	p.I1629	0.000	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				236	0	0	90	55	37.931
GPR179	0	genome.wustl.edu	37	17	36485203	36485203	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	36485203	36485203	C	A	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	nonsense	c.4249	p.E1417*	0.992	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888				174	0	0	80	41	33.8843
FBXO47	0	genome.wustl.edu	37	17	37101317	37101317	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	37101317	37101317	C	T	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.689	p.R230Q	0.997	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				121	0	0	61	32	34.4086
LRRC37A11P	0	genome.wustl.edu	37	17	37209287	37209287	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	37209287	37209287	C	A	SNP	LRRC37A11P	ENST00000425901	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.674	-	-	-	no_errors	LRRC37A11P	HGNC	ENSG00000214553				15	0	0	11	7	38.8889
C17orf85	0	genome.wustl.edu	37	17	3721585	3721585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3721585	3721585	C	T	SNP	C17orf85	ENST00000389005	human	ensembl	74_37	-1	known	missense	c.1282	p.E428K	1.000	NULL	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356				114	0	0	58	25	30.1205
C17orf85	0	genome.wustl.edu	37	17	3724565	3724565	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3724565	3724565	C	T	SNP	C17orf85	ENST00000389005	human	ensembl	74_37	-1	known	silent	c.978	p.T326	0.964	NULL	pfam_DUF2414	-	no_errors	C17orf85	HGNC	ENSG00000074356				92	0	0	39	19	32.7586
FBXL20	0	genome.wustl.edu	37	17	37455249	37455249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	37455249	37455249	G	T	SNP	FBXL20	ENST00000264658	human	ensembl	74_37	-1	known	missense	c.323	p.A108E	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL20	HGNC	ENSG00000108306				126	0	0	67	40	37.3832
MED1	0	genome.wustl.edu	37	17	37565245	37565245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	37565245	37565245	G	A	SNP	MED1	ENST00000300651	human	ensembl	74_37	-1	known	missense	c.3229	p.P1077S	1.000	NULL	pfam_Mediator_Med1_met/fun	-	no_errors	MED1	HGNC	ENSG00000125686				188	0	0	88	34	27.8689
CDK12	0	genome.wustl.edu	37	17	37650863	37650863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	37650863	37650863	C	T	SNP	CDK12	ENST00000447079	human	ensembl	74_37	+1	known	missense	c.2335	p.R779C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK12	HGNC	ENSG00000167258				44	0	0	28	6	17.6471
GSDMB	0	genome.wustl.edu	37	17	38068679	38068679	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38068679	38068679	C	A	SNP	GSDMB	ENST00000360317	human	ensembl	74_37	-1	known	nonsense	c.307	p.E103*	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMB	HGNC	ENSG00000073605				94	0	0	55	22	28.5714
THRA	0	genome.wustl.edu	37	17	38249572	38249572	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38249572	38249572	G	A	SNP	THRA	ENST00000264637	human	ensembl	74_37	+1	known	silent	c.1410	p.P470	0.997	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRA	HGNC	ENSG00000126351				43	0	0	27	12	30.7692
CCR7	0	genome.wustl.edu	37	17	38711747	38711747	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38711747	38711747	A	C	SNP	CCR7	ENST00000246657	human	ensembl	74_37	-1	known	missense	c.384	p.F128L	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR4	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR7,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4,prints_Chemokine_CCRL1	-	no_errors	CCR7	HGNC	ENSG00000126353				83	0	0	40	6	13.0435
KRT25	0	genome.wustl.edu	37	17	38907471	38907471	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38907471	38907471	G	A	SNP	KRT25	ENST00000312150	human	ensembl	74_37	-1	known	silent	c.777	p.Y259	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897				95	0	0	54	27	33.3333
KRT26	0	genome.wustl.edu	37	17	38926007	38926007	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38926007	38926007	A	G	SNP	KRT26	ENST00000335552	human	ensembl	74_37	-1	known	missense	c.968	p.V323A	0.142	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT26	HGNC	ENSG00000186393				140	0	0	73	36	33.0275
KRT27	0	genome.wustl.edu	37	17	38938569	38938569	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	38938569	38938569	G	A	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	silent	c.177	p.G59	0.085	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446				104	0	0	54	37	40.6593
ZZEF1	0	genome.wustl.edu	37	17	3922983	3922983	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	3922983	3922983	G	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.7485	p.F2495L	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				138	0	0	62	37	37.3737
KRTAP9-3	0	genome.wustl.edu	37	17	39389162	39389162	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	39389162	39389162	A	C	SNP	KRTAP9-3	ENST00000411528	human	ensembl	74_37	+1	known	missense	c.409	p.T137P	0.278	NULL	NULL	-	no_errors	KRTAP9-3	HGNC	ENSG00000204873				267	0	0	168	83	33.0677
KRT37	0	genome.wustl.edu	37	17	39580043	39580043	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	39580043	39580043	C	T	SNP	KRT37	ENST00000225550	human	ensembl	74_37	-1	known	silent	c.546	p.A182	1.000	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	KRT37	HGNC	ENSG00000108417				91	0	0	44	26	37.1429
KRT35	0	genome.wustl.edu	37	17	39633950	39633950	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	39633950	39633950	C	T	SNP	KRT35	ENST00000393989	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079				86	0	0	37	16	30.1887
KRT35	0	genome.wustl.edu	37	17	39634617	39634617	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	39634617	39634617	C	T	SNP	KRT35	ENST00000393989	human	ensembl	74_37	-1	known	missense	c.995	p.S332N	1.000	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT35	HGNC	ENSG00000197079				71	0	0	34	10	22.7273
KRT13	0	genome.wustl.edu	37	17	39661466	39661466	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	39661466	39661466	C	T	SNP	KRT13	ENST00000246635	human	ensembl	74_37	-1	known	missense	c.337	p.D113N	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT13	HGNC	ENSG00000171401				178	0	0	81	34	29.5652
ACLY	0	genome.wustl.edu	37	17	40065299	40065299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40065299	40065299	C	T	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	missense	c.559	p.G187S	1.000	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				37	0	0	12	14	53.8462
RAB5C	0	genome.wustl.edu	37	17	40278791	40278791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40278791	40278791	C	T	SNP	RAB5C	ENST00000346213	human	ensembl	74_37	-1	known	missense	c.517	p.E173K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774				178	0	0	89	41	31.5385
KCNH4	0	genome.wustl.edu	37	17	40330965	40330965	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40330965	40330965	G	T	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	silent	c.156	p.L52	1.000	pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,pfscan_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				93	0	0	38	21	35.5932
HCRT	0	genome.wustl.edu	37	17	40336439	40336439	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40336439	40336439	C	A	SNP	HCRT	ENST00000293330	human	ensembl	74_37	-1	known	missense	c.129	p.K43N	1.000	pfam_Orexin,pirsf_Orexin,prints_Orexin	pfam_Orexin,pirsf_Orexin,prints_Orexin	-	no_errors	HCRT	HGNC	ENSG00000161610				24	0	0	10	10	50
STAT5B	0	genome.wustl.edu	37	17	40354820	40354820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40354820	40354820	G	A	SNP	STAT5B	ENST00000293328	human	ensembl	74_37	-1	known	missense	c.2084	p.A695V	0.999	smart_SH2	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5B	HGNC	ENSG00000173757				213	0	0	82	54	39.7059
STAT5A	0	genome.wustl.edu	37	17	40456604	40456604	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40456604	40456604	G	T	SNP	STAT5A	ENST00000345506	human	ensembl	74_37	+1	known	missense	c.1314	p.E438D	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561				121	0	0	52	27	34.1772
ANKFY1	0	genome.wustl.edu	37	17	4071204	4071204	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4071204	4071204	G	A	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.3505	p.R1169C	1.000	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				63	0	0	43	25	36.7647
CNTNAP1	0	genome.wustl.edu	37	17	40839829	40839829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	40839829	40839829	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.1136	p.R379H	0.994	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				177	1	0.561798	83	45	35.1562
ANKFY1	0	genome.wustl.edu	37	17	4085508	4085508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4085508	4085508	C	T	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.2215	p.A739T	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722				203	1	0.490196	106	54	33.75
BRCA1	0	genome.wustl.edu	37	17	41244869	41244869	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	41244869	41244869	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	74_37	-1	known	missense	c.2679	p.K893N	0.000	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,prints_BRCA1,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048				136	0	0	75	50	40
MEOX1	0	genome.wustl.edu	37	17	41720906	41720906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	41720906	41720906	G	A	SNP	MEOX1	ENST00000318579	human	ensembl	74_37	-1	known	missense	c.592	p.R198W	0.981	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX1	HGNC	ENSG00000005102				30	0	0	13	5	27.7778
CD300LG	0	genome.wustl.edu	37	17	41925966	41925966	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	41925966	41925966	C	T	SNP	CD300LG	ENST00000317310	human	ensembl	74_37	+1	known	silent	c.84	p.F28	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LG	HGNC	ENSG00000161649				157	0	0	70	41	36.9369
ITGA2B	0	genome.wustl.edu	37	17	42452077	42452077	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42452077	42452077	A	G	SNP	ITGA2B	ENST00000262407	human	ensembl	74_37	-1	known	missense	c.2893	p.S965P	0.974	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA2B	HGNC	ENSG00000005961				116	0	0	38	15	28.3019
FZD2	0	genome.wustl.edu	37	17	42635315	42635315	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42635315	42635315	G	A	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	missense	c.259	p.E87K	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				158	0	0	86	50	36.7647
C17orf104	0	genome.wustl.edu	37	17	42745389	42745389	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42745389	42745389	T	G	SNP	C17orf104	ENST00000409122	human	ensembl	74_37	+1	known	missense	c.2110	p.L704V	0.997	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336				39	0	0	25	13	34.2105
ADAM11	0	genome.wustl.edu	37	17	42850282	42850282	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42850282	42850282	A	G	SNP	ADAM11	ENST00000200557	human	ensembl	74_37	+1	known	missense	c.736	p.I246V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,prints_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM11	HGNC	ENSG00000073670				83	0	0	42	27	39.1304
GJC1	0	genome.wustl.edu	37	17	42882006	42882006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42882006	42882006	C	T	SNP	GJC1	ENST00000330514	human	ensembl	74_37	-1	known	missense	c.1180	p.V394I	1.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin45	-	no_errors	GJC1	HGNC	ENSG00000182963				197	1	0.505051	102	52	33.7662
HIGD1B	0	genome.wustl.edu	37	17	42926632	42926632	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42926632	42926632	C	T	SNP	HIGD1B	ENST00000253410	human	ensembl	74_37	+1	known	silent	c.111	p.G37	1.000	pfam_Hypoxia_induced_domain	pfam_Hypoxia_induced_domain	-	no_errors	HIGD1B	HGNC	ENSG00000131097				104	0	0	39	33	45.8333
GFAP	0	genome.wustl.edu	37	17	42992513	42992513	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	42992513	42992513	G	A	SNP	GFAP	ENST00000253408	human	ensembl	74_37	-1	known	silent	c.342	p.D114	0.395	pfam_IF	pfam_IF	-	no_errors	GFAP	HGNC	ENSG00000131095				122	0	0	51	33	39.2857
KIF18B	0	genome.wustl.edu	37	17	43012671	43012671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	43012671	43012671	G	A	SNP	KIF18B	ENST00000339151	human	ensembl	74_37	-1	known	missense	c.427	p.R143C	0.084	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF18B	HGNC	ENSG00000186185				58	0	0	29	14	32.5581
SPATA32	0	genome.wustl.edu	37	17	43332645	43332645	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	43332645	43332645	C	T	SNP	SPATA32	ENST00000331780	human	ensembl	74_37	-1	known	missense	c.904	p.E302K	0.000	NULL	NULL	-	no_errors	SPATA32	HGNC	ENSG00000184361				283	0	0	116	77	39.8964
SPNS3	0	genome.wustl.edu	37	17	4337402	4337402	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4337402	4337402	C	T	SNP	SPNS3	ENST00000355530	human	ensembl	74_37	+1	known	missense	c.140	p.A47V	0.952	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS3	HGNC	ENSG00000182557				160	0	0	59	32	35.1648
CRHR1	0	genome.wustl.edu	37	17	43907879	43907879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	43907879	43907879	G	A	SNP	CRHR1	ENST00000398285	human	ensembl	74_37	+1	known	missense	c.739	p.V247M	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_CRF_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CRF1_rcpt,prints_GPCR_2_diuretic_rcpt	-	no_errors	CRHR1	HGNC	ENSG00000120088				221	1	0.45045	109	53	32.716
EFCAB13	0	genome.wustl.edu	37	17	45455139	45455139	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	45455139	45455139	C	A	SNP	EFCAB13	ENST00000331493	human	ensembl	74_37	+1	known	missense	c.1380	p.F460L	0.004	NULL	NULL	-	no_errors	EFCAB13	HGNC	ENSG00000178852				30	0	0	14	23	62.1622
MRPL45P2	0	genome.wustl.edu	37	17	45560427	45560427	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	45560427	45560427	T	C	SNP	MRPL45P2	ENST00000425159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.599	-	-	-	no_errors	MRPL45P2	HGNC	ENSG00000228782				107	0	0	94	38	28.7879
KPNB1	0	genome.wustl.edu	37	17	45734311	45734311	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	45734311	45734311	T	C	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.368	p.V123A	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424				75	0	0	40	19	32.2034
PELP1	0	genome.wustl.edu	37	17	4578449	4578449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4578449	4578449	C	T	SNP	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	missense	c.1631	p.R544H	1.000	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				58	0	0	18	13	41.9355
TBX21	0	genome.wustl.edu	37	17	45822165	45822165	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	45822165	45822165	T	C	SNP	TBX21	ENST00000177694	human	ensembl	74_37	+1	known	silent	c.1041	p.C347	0.687	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX21	HGNC	ENSG00000073861				205	0	0	98	62	38.75
CDK5RAP3	0	genome.wustl.edu	37	17	46058857	46058857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	46058857	46058857	A	G	SNP	CDK5RAP3	ENST00000338399	human	ensembl	74_37	+1	known	missense	c.1510	p.T504A	0.939	NULL	pfam_DUF773	-	no_errors	CDK5RAP3	HGNC	ENSG00000108465				140	1	0.70922	60	34	36.1702
CXCL16	0	genome.wustl.edu	37	17	4638447	4638447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4638447	4638447	C	T	SNP	CXCL16	ENST00000293778	human	ensembl	74_37	-1	known	missense	c.715	p.A239T	0.003	NULL	NULL	-	no_errors	CXCL16	HGNC	ENSG00000161921				73	0	0	29	11	27.5
IGF2BP1	0	genome.wustl.edu	37	17	47123723	47123723	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47123723	47123723	C	A	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.1629	p.F543L	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217				66	0	0	27	28	50.9091
B4GALNT2	0	genome.wustl.edu	37	17	47243530	47243530	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47243530	47243530	C	A	SNP	B4GALNT2	ENST00000300404	human	ensembl	74_37	+1	known	missense	c.1189	p.L397I	1.000	pfam_Glyco_trans_2,pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT2	HGNC	ENSG00000167080				105	0	0	69	27	28.125
ZNF652	0	genome.wustl.edu	37	17	47388809	47388809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47388809	47388809	C	T	SNP	ZNF652	ENST00000362063	human	ensembl	74_37	-1	known	missense	c.1174	p.E392K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740				273	0	0	145	71	32.8704
SLC35B1	0	genome.wustl.edu	37	17	47785121	47785121	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47785121	47785121	A	C	SNP	SLC35B1	ENST00000415270	human	ensembl	74_37	-1	known	nonsense	c.186	p.Y62*	1.000	pfam_UAA	pfam_UAA,pfam_DMT,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35B1	HGNC	ENSG00000121073				34	0	0	26	7	21.2121
KAT7	0	genome.wustl.edu	37	17	47874139	47874139	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47874139	47874139	C	A	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	missense	c.191	p.S64Y	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504				163	1	0.609756	103	55	34.8101
KAT7	0	genome.wustl.edu	37	17	47893237	47893237	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47893237	47893237	C	A	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	missense	c.925	p.L309I	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504				96	0	0	48	33	40.7407
DLX3	0	genome.wustl.edu	37	17	48070831	48070831	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	48070831	48070831	T	G	SNP	DLX3	ENST00000434704	human	ensembl	74_37	-1	known	missense	c.449	p.K150T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195				30	0	0	19	8	29.6296
GP1BA	0	genome.wustl.edu	37	17	4836037	4836037	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4836037	4836037	G	A	SNP	GP1BA	ENST00000329125	human	ensembl	74_37	+1	known	silent	c.138	p.P46	0.001	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	GP1BA	HGNC	ENSG00000185245				264	0	0	134	68	33.6634
SLC25A11	0	genome.wustl.edu	37	17	4841845	4841845	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4841845	4841845	G	A	SNP	SLC25A11	ENST00000225665	human	ensembl	74_37	-1	known	nonsense	c.508	p.R170*	0.687	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A11	HGNC	ENSG00000108528				231	0	0	121	64	34.5946
ACSF2	0	genome.wustl.edu	37	17	48538054	48538054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	48538054	48538054	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	74_37	+1	known	missense	c.145	p.R49C	0.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107				44	0	0	20	10	33.3333
ACSF2	0	genome.wustl.edu	37	17	48551589	48551589	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	48551589	48551589	C	T	SNP	ACSF2	ENST00000300441	human	ensembl	74_37	+1	known	silent	c.1758	p.I586	0.997	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSF2	HGNC	ENSG00000167107				215	0	0	156	21	11.8644
ANKRD40	0	genome.wustl.edu	37	17	48773432	48773432	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	48773432	48773432	G	A	SNP	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	silent	c.1033	p.L345	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				128	0	0	65	42	39.2523
KIF1C	0	genome.wustl.edu	37	17	4927223	4927223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	4927223	4927223	G	A	SNP	KIF1C	ENST00000320785	human	ensembl	74_37	+1	known	missense	c.3089	p.R1030H	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1C	HGNC	ENSG00000129250				89	0	0	39	21	35
MBTD1	0	genome.wustl.edu	37	17	49280149	49280149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	49280149	49280149	T	C	SNP	MBTD1	ENST00000415868	human	ensembl	74_37	-1	known	missense	c.976	p.T326A	0.996	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	MBTD1	HGNC	ENSG00000011258				265	0	0	130	91	41.1765
ZNF594	0	genome.wustl.edu	37	17	5085969	5085969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	5085969	5085969	C	T	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.1583	p.R528H	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				240	0	0	112	49	30.4348
ZNF594	0	genome.wustl.edu	37	17	5086896	5086896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	5086896	5086896	G	A	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	missense	c.656	p.A219V	0.671	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				226	1	0.440529	109	44	28.7582
TMEM100	0	genome.wustl.edu	37	17	53798220	53798220	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	53798220	53798220	A	G	SNP	TMEM100	ENST00000424486	human	ensembl	74_37	-1	known	missense	c.212	p.V71A	1.000	NULL	NULL	-	no_errors	TMEM100	HGNC	ENSG00000166292				141	0	0	111	39	26
NLRP1	0	genome.wustl.edu	37	17	5434015	5434015	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	5434015	5434015	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	silent	c.3306	p.F1102	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				85	0	0	44	15	25.4237
NLRP1	0	genome.wustl.edu	37	17	5442742	5442742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	5442742	5442742	G	A	SNP	NLRP1	ENST00000572272	human	ensembl	74_37	-1	known	missense	c.2863	p.R955C	0.000	NULL	pfam_CARD,pfam_DAPIN,pfam_Leu-rich_rpt,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD,pfscan_DAPIN,prints_Disease_R	-	no_errors	NLRP1	HGNC	ENSG00000091592				80	0	0	38	19	33.3333
COIL	0	genome.wustl.edu	37	17	55038341	55038341	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	55038341	55038341	C	A	SNP	COIL	ENST00000240316	human	ensembl	74_37	-1	known	missense	c.40	p.D14Y	1.000	NULL	NULL	-	no_errors	COIL	HGNC	ENSG00000121058				54	0	0	49	12	19.6721
DYNLL2	0	genome.wustl.edu	37	17	56166549	56166549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56166549	56166549	G	A	SNP	DYNLL2	ENST00000579991	human	ensembl	74_37	+1	known	missense	c.179	p.R60Q	1.000	pfam_Dynein_light_chain_typ-1/2	pfam_Dynein_light_chain_typ-1/2	-	no_errors	DYNLL2	HGNC	ENSG00000264364				137	0	0	79	40	33.6134
OR4D1	0	genome.wustl.edu	37	17	56232801	56232801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56232801	56232801	G	A	SNP	OR4D1	ENST00000268912	human	ensembl	74_37	+1	known	missense	c.287	p.G96D	0.823	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D1	HGNC	ENSG00000141194				170	0	0	86	54	38.5714
OR4D2	0	genome.wustl.edu	37	17	56247046	56247046	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56247046	56247046	A	C	SNP	OR4D2	ENST00000545221	human	ensembl	74_37	+1	known	silent	c.30	p.S10	0.838	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713				189	0	0	123	53	30.1136
MPO	0	genome.wustl.edu	37	17	56348199	56348199	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56348199	56348199	A	G	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	missense	c.2152	p.F718L	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381				96	0	0	46	7	13.2075
MTMR4	0	genome.wustl.edu	37	17	56586131	56586131	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56586131	56586131	G	A	SNP	MTMR4	ENST00000323456	human	ensembl	74_37	-1	known	missense	c.365	p.A122V	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR4	HGNC	ENSG00000108389				70	0	0	36	26	41.9355
SEPT4	0	genome.wustl.edu	37	17	56598158	56598158	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56598158	56598158	G	A	SNP	SEPT4	ENST00000457347	human	ensembl	74_37	-1	known	silent	c.1368	p.V456	1.000	NULL	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase	-	no_errors	SEPT4	HGNC	ENSG00000108387				257	1	0.387597	135	62	31.4721
C17orf47	0	genome.wustl.edu	37	17	56620179	56620179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	56620179	56620179	G	A	SNP	C17orf47	ENST00000321691	human	ensembl	74_37	-1	known	missense	c.1369	p.L457F	0.080	NULL	NULL	-	no_errors	C17orf47	HGNC	ENSG00000181013				314	0	0	162	61	27.3543
PPM1E	0	genome.wustl.edu	37	17	57043102	57043102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57043102	57043102	G	A	SNP	PPM1E	ENST00000308249	human	ensembl	74_37	+1	known	missense	c.631	p.E211K	1.000	superfamily_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1E	HGNC	ENSG00000175175				364	0	0	194	125	39.185
SMG8	0	genome.wustl.edu	37	17	57288596	57288596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57288596	57288596	A	G	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	missense	c.1184	p.D395G	1.000	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				162	0	0	68	39	36.4486
SMG8	0	genome.wustl.edu	37	17	57288693	57288693	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57288693	57288693	C	T	SNP	SMG8	ENST00000300917	human	ensembl	74_37	+1	known	silent	c.1281	p.F427	1.000	pfam_Smg8/Smg9	pfam_Smg8/Smg9	-	no_errors	SMG8	HGNC	ENSG00000167447				121	0	0	60	29	32.5843
GDPD1	0	genome.wustl.edu	37	17	57344492	57344492	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57344492	57344492	C	T	SNP	GDPD1	ENST00000284116	human	ensembl	74_37	+1	known	nonsense	c.667	p.R223*	0.998	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD1	HGNC	ENSG00000153982				108	0	0	54	44	44.898
CLTC	0	genome.wustl.edu	37	17	57760277	57760277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57760277	57760277	G	A	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	missense	c.3775	p.A1259T	1.000	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				73	0	0	63	33	34.375
PTRH2	0	genome.wustl.edu	37	17	57775206	57775206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57775206	57775206	G	A	SNP	PTRH2	ENST00000393038	human	ensembl	74_37	-1	known	missense	c.134	p.T45M	0.000	NULL	pfam_PTH2,superfamily_Pep_tRNA_hydro_II_dom,tigrfam_PTH2	-	no_errors	PTRH2	HGNC	ENSG00000141378				105	0	0	57	29	33.7209
TUBD1	0	genome.wustl.edu	37	17	57955475	57955475	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	57955475	57955475	C	T	SNP	TUBD1	ENST00000325752	human	ensembl	74_37	-1	known	missense	c.758	p.R253Q	1.000	superfamily_Tub_FtsZ_C	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423				105	0	0	47	24	33.8028
LOC101927755	0	genome.wustl.edu	37	17	58073290	58073290	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58073290	58073290	A	C	SNP	LOC101927755	ENST00000586209	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.973	-	-	-	no_errors	RP11-178C3.2	Clone_based_vega_gene	ENSG00000267302				43	0	0	28	10	26.3158
HEATR6	0	genome.wustl.edu	37	17	58143671	58143671	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58143671	58143671	G	T	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	missense	c.1315	p.L439I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097				48	0	0	41	25	37.8788
USP32	0	genome.wustl.edu	37	17	58258686	58258686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58258686	58258686	G	A	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.4547	p.S1516L	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				100	0	0	62	33	34.7368
USP32	0	genome.wustl.edu	37	17	58260766	58260766	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58260766	58260766	A	G	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.3883	p.S1295P	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				95	0	0	68	27	28.4211
USP32	0	genome.wustl.edu	37	17	58346875	58346875	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58346875	58346875	A	C	SNP	USP32	ENST00000300896	human	ensembl	74_37	-1	known	missense	c.747	p.D249E	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_EF_hand_dom,smart_Pept_C19_DUSP,pfscan_EF_hand_dom,pfscan_Peptidase_C19/C67,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832				64	0	0	40	21	34.4262
PPM1D	0	genome.wustl.edu	37	17	58740750	58740750	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	58740750	58740750	G	A	SNP	PPM1D	ENST00000305921	human	ensembl	74_37	+1	known	missense	c.1655	p.R552Q	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1D	HGNC	ENSG00000170836				128	0	0	71	33	31.7308
ENSG00000267207	0	genome.wustl.edu	37	17	59147389	59147389	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	59147389	59147389	G	A	SNP	ENSG00000267207	ENST00000588604	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.973	-	-	-	no_errors	RP11-264B14.1	Clone_based_vega_gene	ENSG00000267207				163	0	0	84	38	31.1475
TBX2	0	genome.wustl.edu	37	17	59479294	59479294	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	59479294	59479294	C	T	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	silent	c.645	p.I215	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				97	0	0	42	23	35.3846
C17orf82	0	genome.wustl.edu	37	17	59489455	59489455	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	59489455	59489455	T	C	SNP	C17orf82	ENST00000335108	human	ensembl	74_37	+1	known	missense	c.119	p.V40A	0.001	NULL	NULL	-	no_errors	C17orf82	HGNC	ENSG00000187013				45	0	0	27	12	30.7692
BRIP1	0	genome.wustl.edu	37	17	59763410	59763410	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	59763410	59763410	C	T	SNP	BRIP1	ENST00000259008	human	ensembl	74_37	-1	known	missense	c.2692	p.D898N	0.000	NULL	pfam_DEAD_2,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_TIL_dom,smart_Helicase-like_DEXD_c2,smart_Helicase_ATP-bd,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	BRIP1	HGNC	ENSG00000136492				188	0	0	122	58	32.2222
INTS2	0	genome.wustl.edu	37	17	59945352	59945352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	59945352	59945352	C	T	SNP	INTS2	ENST00000444766	human	ensembl	74_37	-1	known	missense	c.3287	p.R1096Q	1.000	NULL	NULL	-	no_errors	INTS2	HGNC	ENSG00000108506				52	0	0	28	11	28.2051
MED13	0	genome.wustl.edu	37	17	60038340	60038340	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	60038340	60038340	G	T	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.5368	p.L1790I	1.000	pfam_Mediator_Med13	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				57	0	0	52	27	34.1772
MED13	0	genome.wustl.edu	37	17	60042387	60042387	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	60042387	60042387	C	T	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	silent	c.4824	p.P1608	0.996	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				53	0	0	37	14	27.451
MRC2	0	genome.wustl.edu	37	17	60741967	60741967	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	60741967	60741967	C	T	SNP	MRC2	ENST00000303375	human	ensembl	74_37	+1	known	silent	c.177	p.G59	0.660	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC2	HGNC	ENSG00000011028				179	0	0	83	35	29.661
TANC2	0	genome.wustl.edu	37	17	61278268	61278268	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	61278268	61278268	C	T	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.497	p.A166V	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				165	0	0	104	45	30.2013
TANC2	0	genome.wustl.edu	37	17	61466084	61466084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	61466084	61466084	C	T	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	missense	c.2558	p.A853V	1.000	smart_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				18	0	0	8	6	42.8571
TACO1	0	genome.wustl.edu	37	17	61684818	61684818	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	61684818	61684818	T	G	SNP	TACO1	ENST00000258975	human	ensembl	74_37	+1	known	silent	c.687	p.V229	0.491	pfam_Transcrip_reg_TACO1-like	pfam_Transcrip_reg_TACO1-like	-	no_errors	TACO1	HGNC	ENSG00000136463				82	0	0	56	18	24.3243
FTSJ3	0	genome.wustl.edu	37	17	61902505	61902505	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	61902505	61902505	T	G	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.614	p.K205T	1.000	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				93	0	0	54	25	31.6456
LRRC37A3	0	genome.wustl.edu	37	17	62892249	62892249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	62892249	62892249	G	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	missense	c.1127	p.S376Y	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				531	0	0	333	95	22.1963
RGS9	0	genome.wustl.edu	37	17	63206625	63206625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	63206625	63206625	C	T	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1309	p.R437W	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				211	1	0.471698	94	44	31.8841
CEP112	0	genome.wustl.edu	37	17	63685267	63685267	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	63685267	63685267	C	A	SNP	CEP112	ENST00000392769	human	ensembl	74_37	-1	known	nonsense	c.2677	p.E893*	0.771	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240				65	0	0	40	27	40.2985
PITPNM3	0	genome.wustl.edu	37	17	6387538	6387538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	6387538	6387538	C	T	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	missense	c.349	p.E117K	0.992	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622				192	0	0	104	58	35.8025
APOH	0	genome.wustl.edu	37	17	64210746	64210746	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	64210746	64210746	T	G	SNP	APOH	ENST00000205948	human	ensembl	74_37	-1	known	missense	c.807	p.K269N	0.998	pfam_Sushi_2,superfamily_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_Sushi_2,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	APOH	HGNC	ENSG00000091583				135	0	0	74	49	39.8374
PRKCA	0	genome.wustl.edu	37	17	64641554	64641554	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	64641554	64641554	G	A	SNP	PRKCA	ENST00000413366	human	ensembl	74_37	+1	known	missense	c.454	p.G152R	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Protein_kinase_C_a/b/g,prints_DAG/PE-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229				102	0	0	48	40	45.4545
CACNG5	0	genome.wustl.edu	37	17	64881136	64881136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	64881136	64881136	C	T	SNP	CACNG5	ENST00000307139	human	ensembl	74_37	+1	known	missense	c.607	p.R203W	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g5su	-	no_errors	CACNG5	HGNC	ENSG00000075429				75	0	0	60	21	25.9259
HELZ	0	genome.wustl.edu	37	17	65132142	65132142	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	65132142	65132142	T	G	SNP	HELZ	ENST00000358691	human	ensembl	74_37	-1	known	missense	c.3126	p.Q1042H	0.998	superfamily_P-loop_NTPase	pfam_Znf_CCCH,superfamily_P-loop_NTPase,smart_Znf_CCCH	-	no_errors	HELZ	HGNC	ENSG00000198265				61	0	0	28	22	44
KIAA0753	0	genome.wustl.edu	37	17	6531586	6531586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	6531586	6531586	G	A	SNP	KIAA0753	ENST00000361413	human	ensembl	74_37	-1	known	missense	c.569	p.S190L	0.097	NULL	NULL	-	no_errors	KIAA0753	HGNC	ENSG00000198920				154	0	0	93	38	29.0076
BPTF	0	genome.wustl.edu	37	17	65899998	65899998	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	65899998	65899998	G	A	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	silent	c.3015	p.A1005	0.341	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				49	0	0	46	22	32.3529
BPTF	0	genome.wustl.edu	37	17	65908574	65908574	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	65908574	65908574	G	T	SNP	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	missense	c.4952	p.S1651I	0.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				136	0	0	64	38	37.2549
KPNA2	0	genome.wustl.edu	37	17	66033597	66033597	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66033597	66033597	A	C	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.199	p.N67H	1.000	pfam_Importin-a_IBB,superfamily_ARM-type_fold	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				125	0	0	74	36	32.7273
KPNA2	0	genome.wustl.edu	37	17	66038403	66038403	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66038403	66038403	T	C	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.505	p.S169P	0.093	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				554	0	0	326	164	33.4694
AMZ2	0	genome.wustl.edu	37	17	66251928	66251928	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66251928	66251928	G	T	SNP	AMZ2	ENST00000359904	human	ensembl	74_37	+1	known	nonsense	c.838	p.E280*	1.000	pfam_Pept_M54_archaemetzincn	pfam_Pept_M54_archaemetzincn	-	no_errors	AMZ2	HGNC	ENSG00000196704				108	0	0	62	27	30.3371
SLC16A6	0	genome.wustl.edu	37	17	66267060	66267060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66267060	66267060	C	T	SNP	SLC16A6	ENST00000327268	human	ensembl	74_37	-1	known	missense	c.1241	p.G414D	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A6	HGNC	ENSG00000108932				131	0	0	86	26	23.2143
XAF1	0	genome.wustl.edu	37	17	6661423	6661423	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	6661423	6661423	C	T	SNP	XAF1	ENST00000361842	human	ensembl	74_37	+1	known	silent	c.48	p.V16	0.945	superfamily_TRAF-like	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	XAF1	HGNC	ENSG00000132530				252	0	0	124	59	32.2404
ABCA8	0	genome.wustl.edu	37	17	66913584	66913584	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66913584	66913584	C	A	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.2056	p.V686L	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				165	0	0	96	54	36
ABCA8	0	genome.wustl.edu	37	17	66925729	66925729	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	66925729	66925729	G	A	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	silent	c.912	p.S304	0.024	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				77	0	0	43	31	41.8919
ABCA9	0	genome.wustl.edu	37	17	67016572	67016572	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67016572	67016572	G	A	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.2557	p.R853C	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258				141	0	0	55	84	60.4317
ABCA6	0	genome.wustl.edu	37	17	67083602	67083602	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67083602	67083602	T	G	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.3711	p.Q1237H	0.470	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				242	0	0	209	27	11.4407
ABCA6	0	genome.wustl.edu	37	17	67084326	67084326	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67084326	67084326	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.3680	p.R1227Q	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				36	0	0	36	8	18.1818
ABCA6	0	genome.wustl.edu	37	17	67101676	67101676	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67101676	67101676	G	A	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	silent	c.2667	p.N889	0.007	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				42	0	0	29	14	32.5581
ABCA6	0	genome.wustl.edu	37	17	67103843	67103843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67103843	67103843	C	T	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	missense	c.2383	p.E795K	0.002	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				67	0	0	41	23	35.9375
ABCA6	0	genome.wustl.edu	37	17	67119483	67119483	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67119483	67119483	T	G	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	silent	c.1333	p.R445	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA6	HGNC	ENSG00000154262				59	0	0	28	10	26.3158
ABCA6	0	genome.wustl.edu	37	17	67130778	67130778	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67130778	67130778	A	G	SNP	ABCA6	ENST00000284425	human	ensembl	74_37	-1	known	splice_site	c.564+2	e4+2	1.000	-	-	-	no_errors	ABCA6	HGNC	ENSG00000154262				82	0	0	40	30	42.8571
ABCA10	0	genome.wustl.edu	37	17	67187325	67187325	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67187325	67187325	T	G	SNP	ABCA10	ENST00000269081	human	ensembl	74_37	-1	known	missense	c.2003	p.K668T	0.574	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA10	HGNC	ENSG00000154263				44	0	0	26	7	21.2121
ABCA5	0	genome.wustl.edu	37	17	67246653	67246653	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67246653	67246653	C	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	nonsense	c.4648	p.E1550*	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				52	0	0	32	15	31.9149
ABCA5	0	genome.wustl.edu	37	17	67305533	67305533	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	67305533	67305533	T	G	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.339	p.K113N	0.798	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				90	0	0	57	31	35.2273
NXN	0	genome.wustl.edu	37	17	708413	708413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	708413	708413	C	T	SNP	NXN	ENST00000336868	human	ensembl	74_37	-1	known	missense	c.895	p.D299N	1.000	superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,superfamily_Thioredoxin-like_fold	-	no_errors	NXN	HGNC	ENSG00000167693				34	0	0	13	10	43.4783
COG1	0	genome.wustl.edu	37	17	71197534	71197534	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	71197534	71197534	C	A	SNP	COG1	ENST00000299886	human	ensembl	74_37	+1	known	missense	c.1568	p.S523Y	0.969	NULL	NULL	-	no_errors	COG1	HGNC	ENSG00000166685				268	0	0	123	52	29.7143
C17orf80	0	genome.wustl.edu	37	17	71232871	71232871	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	71232871	71232871	C	T	SNP	C17orf80	ENST00000359042	human	ensembl	74_37	+1	known	missense	c.1250	p.S417F	0.001	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219				81	0	0	48	31	39.2405
GPRC5C	0	genome.wustl.edu	37	17	72436249	72436249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72436249	72436249	G	A	SNP	GPRC5C	ENST00000392627	human	ensembl	74_37	+1	known	missense	c.469	p.D157N	0.610	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412				215	0	0	81	52	39.0977
CD300LB	0	genome.wustl.edu	37	17	72521955	72521955	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72521955	72521955	A	G	SNP	CD300LB	ENST00000392621	human	ensembl	74_37	-1	known	missense	c.413	p.V138A	0.004	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300LB	HGNC	ENSG00000178789				308	0	0	128	60	31.9149
C17orf77	0	genome.wustl.edu	37	17	72588512	72588512	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72588512	72588512	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	74_37	+1	known	silent	c.327	p.K109	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352				162	0	0	88	47	34.8148
RAB37	0	genome.wustl.edu	37	17	72737009	72737009	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72737009	72737009	G	T	SNP	RAB37	ENST00000392614	human	ensembl	74_37	+1	known	missense	c.211	p.D71Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794				158	0	0	71	36	33.6449
OTOP3	0	genome.wustl.edu	37	17	72939782	72939782	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72939782	72939782	C	T	SNP	OTOP3	ENST00000328801	human	ensembl	74_37	+1	known	silent	c.768	p.I256	0.990	NULL	pfam_Otopetrin	-	no_errors	OTOP3	HGNC	ENSG00000182938				59	0	0	35	20	36.3636
HID1	0	genome.wustl.edu	37	17	72947703	72947703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	72947703	72947703	C	T	SNP	HID1	ENST00000425042	human	ensembl	74_37	-1	known	missense	c.2329	p.D777N	1.000	NULL	pfam_Dymeclin	-	no_errors	HID1	HGNC	ENSG00000167861				29	0	0	10	7	41.1765
ACOX1	0	genome.wustl.edu	37	17	73951988	73951988	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	73951988	73951988	G	A	SNP	ACOX1	ENST00000293217	human	ensembl	74_37	-1	known	silent	c.579	p.L193	0.917	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX1	HGNC	ENSG00000161533				242	0	0	136	73	34.9282
EXOC7	0	genome.wustl.edu	37	17	74090528	74090528	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	74090528	74090528	C	A	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	missense	c.775	p.D259Y	0.999	superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473				95	0	0	69	32	31.6832
POLR2A	0	genome.wustl.edu	37	17	7414556	7414556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7414556	7414556	T	C	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.3836	p.M1279T	1.000	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_7	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				68	0	0	52	11	17.4603
POLR2A	0	genome.wustl.edu	37	17	7415517	7415517	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7415517	7415517	A	G	SNP	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	missense	c.4346	p.D1449G	1.000	NULL	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				86	0	0	36	13	26.5306
MFSD11	0	genome.wustl.edu	37	17	74772498	74772498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	74772498	74772498	G	A	SNP	MFSD11	ENST00000336509	human	ensembl	74_37	+1	known	missense	c.1060	p.A354T	1.000	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD11	HGNC	ENSG00000092931				149	0	0	94	45	32.3741
EIF4A1	0	genome.wustl.edu	37	17	7480012	7480012	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7480012	7480012	T	C	SNP	EIF4A1	ENST00000293831	human	ensembl	74_37	+1	known	splice_site	c.514+2	e5+2	1.000	-	-	-	no_errors	EIF4A1	HGNC	ENSG00000161960				132	0	0	66	38	36.5385
ATP1B2	0	genome.wustl.edu	37	17	7557412	7557412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7557412	7557412	G	A	SNP	ATP1B2	ENST00000250111	human	ensembl	74_37	+1	known	missense	c.389	p.R130H	1.000	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	pfam_Na/K_ATPase_sub_beta,tigrfam_Na/K_ATPase_sub_beta	-	no_errors	ATP1B2	HGNC	ENSG00000129244				365	0	0	184	90	32.8467
WRAP53	0	genome.wustl.edu	37	17	7604072	7604072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7604072	7604072	G	A	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	missense	c.656	p.R219Q	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499				259	0	0	130	56	30.1075
SYNGR2	0	genome.wustl.edu	37	17	76167232	76167232	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	76167232	76167232	A	C	SNP	SYNGR2	ENST00000592456	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SYNGR2	HGNC	ENSG00000108639				39	0	0	16	10	38.4615
DNAH17	0	genome.wustl.edu	37	17	76471877	76471877	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	76471877	76471877	G	T	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.8151	p.I2717	0.989	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				66	0	0	31	12	27.907
DNAH17	0	genome.wustl.edu	37	17	76548826	76548826	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	76548826	76548826	T	C	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	missense	c.2240	p.D747G	0.783	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				232	0	0	154	67	30.3167
DNAH17	0	genome.wustl.edu	37	17	76554208	76554208	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	76554208	76554208	G	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.2160	p.I720	0.924	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				38	0	0	16	7	30.4348
DNAH2	0	genome.wustl.edu	37	17	7660464	7660464	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7660464	7660464	A	G	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.1960	p.T654A	0.991	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				415	0	0	215	93	30.1948
DNAH2	0	genome.wustl.edu	37	17	7662770	7662770	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7662770	7662770	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.2479	p.R827W	0.699	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				131	0	0	54	30	35.7143
USP36	0	genome.wustl.edu	37	17	76832327	76832327	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	76832327	76832327	A	G	SNP	USP36	ENST00000312010	human	ensembl	74_37	-1	known	missense	c.119	p.I40T	0.998	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				78	0	0	39	11	22
TBC1D16	0	genome.wustl.edu	37	17	77922709	77922709	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	77922709	77922709	G	T	SNP	TBC1D16	ENST00000310924	human	ensembl	74_37	-1	known	missense	c.1503	p.F501L	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D16	HGNC	ENSG00000167291				187	0	0	78	46	37.0968
CHD3	0	genome.wustl.edu	37	17	7809005	7809005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7809005	7809005	G	A	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.4205	p.R1402Q	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				48	0	0	35	14	28.5714
CARD14	0	genome.wustl.edu	37	17	78162210	78162210	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	78162210	78162210	A	G	SNP	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	missense	c.710	p.N237S	0.001	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				53	0	0	26	10	27.7778
RNF213	0	genome.wustl.edu	37	17	78321073	78321073	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	78321073	78321073	G	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.8938	p.A2980S	0.908	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				56	0	0	30	10	25
RNF213	0	genome.wustl.edu	37	17	78354771	78354771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	78354771	78354771	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.13781	p.A4594V	0.981	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				365	1	0.273224	199	96	32.5424
RNF213	0	genome.wustl.edu	37	17	78360622	78360622	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	78360622	78360622	C	T	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.14853	p.F4951	0.980	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				92	0	0	26	10	27.7778
RPTOR	0	genome.wustl.edu	37	17	78796935	78796935	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	78796935	78796935	T	G	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	missense	c.1048	p.F350V	1.000	prints_Raptor	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				182	0	0	127	10	7.29927
AATK	0	genome.wustl.edu	37	17	79095489	79095489	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79095489	79095489	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	silent	c.2247	p.C749	0.006	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				12	0	0	8	4	33.3333
AATK	0	genome.wustl.edu	37	17	79096523	79096523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79096523	79096523	C	T	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.1213	p.E405K	0.996	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				16	0	0	6	3	33.3333
ALOX15B	0	genome.wustl.edu	37	17	7950271	7950271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7950271	7950271	A	G	SNP	ALOX15B	ENST00000380183	human	ensembl	74_37	+1	known	missense	c.1334	p.N445S	0.891	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_mml	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15B	HGNC	ENSG00000179593				141	0	0	56	31	35.6322
TSPAN10	0	genome.wustl.edu	37	17	79615131	79615131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79615131	79615131	C	T	SNP	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	missense	c.875	p.A292V	0.000	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				12	0	0	9	4	30.7692
OXLD1	0	genome.wustl.edu	37	17	79632445	79632445	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79632445	79632445	T	G	SNP	OXLD1	ENST00000374741	human	ensembl	74_37	-1	known	missense	c.230	p.K77T	0.541	NULL	pfam_Oxidoreductase-like_N	-	no_errors	OXLD1	HGNC	ENSG00000204237				100	0	0	45	22	32.8358
ALOX12B	0	genome.wustl.edu	37	17	7980465	7980465	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	7980465	7980465	T	C	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.1118	p.D373G	0.995	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477				52	0	0	17	11	39.2857
SIRT7	0	genome.wustl.edu	37	17	79873485	79873485	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79873485	79873485	A	G	SNP	SIRT7	ENST00000328666	human	ensembl	74_37	-1	known	splice_site	c.407+2	e4+2	1.000	-	-	-	no_errors	SIRT7	HGNC	ENSG00000187531				66	0	0	21	12	36.3636
NOTUM	0	genome.wustl.edu	37	17	79911050	79911050	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	79911050	79911050	C	A	SNP	NOTUM	ENST00000409678	human	ensembl	74_37	-1	known	missense	c.1278	p.K426N	0.682	NULL	pfam_NOTUM	-	no_errors	NOTUM	HGNC	ENSG00000185269				51	0	0	26	9	25.7143
ALOXE3	0	genome.wustl.edu	37	17	8021304	8021304	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8021304	8021304	G	A	SNP	ALOXE3	ENST00000318227	human	ensembl	74_37	-1	known	missense	c.401	p.A134V	0.294	superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C	-	no_errors	ALOXE3	HGNC	ENSG00000179148				28	0	0	13	5	27.7778
HES7	0	genome.wustl.edu	37	17	8026394	8026394	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8026394	8026394	G	C	SNP	HES7	ENST00000541682	human	ensembl	74_37	-1	known	missense	c.93	p.S31R	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HES7	HGNC	ENSG00000179111				17	0	0	12	5	29.4118
NARF	0	genome.wustl.edu	37	17	80443437	80443437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	80443437	80443437	G	A	SNP	NARF	ENST00000309794	human	ensembl	74_37	+1	known	missense	c.1036	p.A346T	0.967	pfam_Fe_hydrogenase_lsu_C,superfamily_Fe_hydrogenase	pfam_Fe_hydrogenase_lsu_C,pfam_Fe_hydrogenase_ssu-like,superfamily_Fe_hydrogenase,smart_Fe_hydrogenase_ssu-like	-	no_errors	NARF	HGNC	ENSG00000141562				175	0	0	89	52	36.8794
PER1	0	genome.wustl.edu	37	17	8053326	8053326	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8053326	8053326	C	T	SNP	PER1	ENST00000317276	human	ensembl	74_37	-1	known	silent	c.492	p.T164	0.281	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094				382	0	0	227	25	9.92063
ZNF750	0	genome.wustl.edu	37	17	80790171	80790171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	80790171	80790171	T	C	SNP	ZNF750	ENST00000269394	human	ensembl	74_37	-1	known	missense	c.160	p.T54A	1.000	NULL	NULL	-	no_errors	ZNF750	HGNC	ENSG00000141579				144	0	0	70	35	33.3333
TBCD	0	genome.wustl.edu	37	17	80863821	80863821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	80863821	80863821	G	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	missense	c.1814	p.R605K	0.000	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				27	0	0	10	4	28.5714
CTC1	0	genome.wustl.edu	37	17	8139580	8139580	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8139580	8139580	G	A	SNP	CTC1	ENST00000315684	human	ensembl	74_37	-1	known	silent	c.873	p.I291	0.013	NULL	NULL	-	no_errors	CTC1	HGNC	ENSG00000178971				83	0	0	50	15	23.0769
MYH10	0	genome.wustl.edu	37	17	8409702	8409702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8409702	8409702	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	missense	c.3290	p.A1097V	0.998	pfam_Myosin_tail,superfamily_HR1_rho-bd	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				126	0	0	58	29	33.3333
CCDC42	0	genome.wustl.edu	37	17	8644901	8644901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8644901	8644901	C	T	SNP	CCDC42	ENST00000293845	human	ensembl	74_37	-1	known	missense	c.383	p.R128H	1.000	NULL	NULL	-	no_errors	CCDC42	HGNC	ENSG00000161973				158	0	0	65	44	40.367
SPDYE4	0	genome.wustl.edu	37	17	8660742	8660742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8660742	8660742	C	T	SNP	SPDYE4	ENST00000328794	human	ensembl	74_37	-1	known	missense	c.178	p.E60K	0.001	NULL	pfam_Cell_cycle_regulatory_Spy1	-	no_errors	SPDYE4	HGNC	ENSG00000183318				17	0	0	13	5	27.7778
MFSD6L	0	genome.wustl.edu	37	17	8701241	8701241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	8701241	8701241	C	T	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	missense	c.1198	p.E400K	0.995	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				147	0	0	66	51	43.5897
NTN1	0	genome.wustl.edu	37	17	9066163	9066163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	9066163	9066163	G	A	SNP	NTN1	ENST00000173229	human	ensembl	74_37	+1	known	missense	c.1052	p.R351H	1.000	pfam_EGF_laminin,smart_EGF_laminin	pfam_Laminin_N,pfam_Netrin_module_non-TIMP,pfam_EGF_laminin,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN1	HGNC	ENSG00000065320				231	0	0	89	42	32.0611
STX8	0	genome.wustl.edu	37	17	9471774	9471774	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	9471774	9471774	C	T	SNP	STX8	ENST00000306357	human	ensembl	74_37	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_T_SNARE_dom,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX8	HGNC	ENSG00000170310				36	0	0	21	15	41.6667
WDR16	0	genome.wustl.edu	37	17	9536289	9536289	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	9536289	9536289	T	C	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.1289	p.V430A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				96	0	0	81	27	25
GAS7	0	genome.wustl.edu	37	17	9830036	9830036	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	9830036	9830036	C	A	SNP	GAS7	ENST00000432992	human	ensembl	74_37	-1	known	missense	c.936	p.K312N	1.000	NULL	pfam_FCH_dom,pfam_WW_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_FCH_dom,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_WW_dom	-	no_errors	GAS7	HGNC	ENSG00000007237				130	0	0	71	25	26.0417
APCDD1	0	genome.wustl.edu	37	18	10488027	10488027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	10488027	10488027	C	T	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	missense	c.1537	p.R513C	0.971	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856				112	0	0	39	32	45.0704
PIEZO2	0	genome.wustl.edu	37	18	10671566	10671566	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	10671566	10671566	T	C	SNP	PIEZO2	ENST00000538948	human	ensembl	74_37	-1	known	silent	c.2088	p.S696	0.339	pfam_Piezo	pfam_Piezo	-	no_errors	PIEZO2	HGNC	ENSG00000154864				57	0	0	38	19	33.3333
SPIRE1	0	genome.wustl.edu	37	18	12479831	12479831	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	12479831	12479831	G	T	SNP	SPIRE1	ENST00000409402	human	ensembl	74_37	-1	known	nonsense	c.1271	p.S424*	0.001	NULL	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE1	HGNC	ENSG00000134278				101	0	0	70	27	27.8351
PTPN2	0	genome.wustl.edu	37	18	12817275	12817275	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	12817275	12817275	G	T	SNP	PTPN2	ENST00000309660	human	ensembl	74_37	-1	known	missense	c.585	p.F195L	1.000	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN2	HGNC	ENSG00000175354				88	0	0	73	47	39.1667
RNMT	0	genome.wustl.edu	37	18	13734563	13734563	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	13734563	13734563	G	T	SNP	RNMT	ENST00000262173	human	ensembl	74_37	+1	known	missense	c.518	p.R173I	1.000	pfam_mRNA_G-N7_MeTrfase_dom,pirsf_mRNA_G-N7_MeTrfase	pfam_mRNA_G-N7_MeTrfase_dom,pfam_Methyltransf_11,pirsf_mRNA_G-N7_MeTrfase	-	no_errors	RNMT	HGNC	ENSG00000101654				65	0	0	51	25	32.8947
CXADRP3	0	genome.wustl.edu	37	18	14478905	14478905	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	14478905	14478905	T	G	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				45	0	0	31	18	36.7347
POTEC	0	genome.wustl.edu	37	18	14511935	14511935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	14511935	14511935	C	T	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.1591	p.E531K	0.770	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				71	0	0	57	25	30.4878
POTEC	0	genome.wustl.edu	37	18	14534909	14534909	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	14534909	14534909	C	A	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.908	p.R303I	0.001	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				63	0	0	75	9	10.7143
POTEC	0	genome.wustl.edu	37	18	14534929	14534929	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	14534929	14534929	A	C	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.888	p.A296	0.001	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				88	0	0	95	13	12.037
LOC644669	0	genome.wustl.edu	37	18	15316643	15316643	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	15316643	15316643	C	A	SNP	LOC644669	ENST00000455308	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.139	-	-	-	no_errors	AP005901.1	Clone_based_vega_gene	ENSG00000215512				8	0	0	9	3	25
ROCK1	0	genome.wustl.edu	37	18	18622574	18622574	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	18622574	18622574	C	A	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	nonsense	c.772	p.E258*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				146	0	0	81	47	36.7188
ROCK1	0	genome.wustl.edu	37	18	18629740	18629740	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	18629740	18629740	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	splice_site	c.276+1	e3+1	1.000	-	-	-	no_errors	ROCK1	HGNC	ENSG00000067900				46	0	0	46	21	31.3433
ESCO1	0	genome.wustl.edu	37	18	19144267	19144267	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	19144267	19144267	C	T	SNP	ESCO1	ENST00000269214	human	ensembl	74_37	-1	known	missense	c.1718	p.R573Q	0.997	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446				28	0	0	18	8	30.7692
ESCO1	0	genome.wustl.edu	37	18	19153793	19153793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	19153793	19153793	C	T	SNP	ESCO1	ENST00000269214	human	ensembl	74_37	-1	known	missense	c.1012	p.E338K	0.306	NULL	NULL	-	no_errors	ESCO1	HGNC	ENSG00000141446				114	0	0	109	32	22.695
ABHD3	0	genome.wustl.edu	37	18	19284546	19284546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	19284546	19284546	G	T	SNP	ABHD3	ENST00000289119	human	ensembl	74_37	-1	known	missense	c.81	p.F27L	0.993	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD3	HGNC	ENSG00000158201				12	0	0	11	4	26.6667
MIB1	0	genome.wustl.edu	37	18	19371466	19371466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	19371466	19371466	G	A	SNP	MIB1	ENST00000261537	human	ensembl	74_37	+1	known	missense	c.1040	p.R347Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB1	HGNC	ENSG00000101752				132	0	0	83	46	35.6589
CTAGE1	0	genome.wustl.edu	37	18	19996468	19996468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	19996468	19996468	G	A	SNP	CTAGE1	ENST00000391403	human	ensembl	74_37	-1	known	missense	c.1307	p.A436V	0.517	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710				94	0	0	80	34	29.8246
ENSG00000266495	0	genome.wustl.edu	37	18	20837178	20837178	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	20837178	20837178	C	A	SNP	ENSG00000266495	ENST00000585184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RP11-17J14.2	Clone_based_vega_gene	ENSG00000266495				77	0	0	44	20	31.25
C18orf8	0	genome.wustl.edu	37	18	21095901	21095901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	21095901	21095901	G	A	SNP	C18orf8	ENST00000269221	human	ensembl	74_37	+1	known	missense	c.490	p.A164T	0.022	superfamily_WD40_repeat_dom	pfam_Mic1,superfamily_WD40_repeat_dom	-	no_errors	C18orf8	HGNC	ENSG00000141452				213	0	0	98	48	32.8767
LAMA3	0	genome.wustl.edu	37	18	21404477	21404477	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	21404477	21404477	C	A	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	nonsense	c.2519	p.S840*	0.956	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				102	0	0	87	35	28.6885
LAMA3	0	genome.wustl.edu	37	18	21461926	21461926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	21461926	21461926	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.5139	p.E1713D	0.003	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747				42	0	0	18	8	30.7692
ZNF521	0	genome.wustl.edu	37	18	22805217	22805217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	22805217	22805217	C	T	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.2665	p.D889N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				119	0	0	56	36	39.1304
TAF4B	0	genome.wustl.edu	37	18	23895348	23895348	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	23895348	23895348	G	T	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.1988	p.R663I	1.000	pfam_TAF4,superfamily_Histone-fold	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384				42	0	0	35	21	37.5
CHST9	0	genome.wustl.edu	37	18	24722665	24722665	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	24722665	24722665	C	T	SNP	CHST9	ENST00000284224	human	ensembl	74_37	-1	known	missense	c.109	p.E37K	1.000	NULL	pfam_Sulfotransferase	-	no_errors	CHST9	HGNC	ENSG00000154080				82	0	0	51	27	34.6154
NDC80	0	genome.wustl.edu	37	18	2577854	2577854	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2577854	2577854	C	T	SNP	NDC80	ENST00000261597	human	ensembl	74_37	+1	known	nonsense	c.289	p.R97*	1.000	pfam_Kinetochore_Ndc80	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986				106	0	0	73	41	35.9649
NDC80	0	genome.wustl.edu	37	18	2577969	2577969	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2577969	2577969	T	G	SNP	NDC80	ENST00000261597	human	ensembl	74_37	+1	known	missense	c.305	p.F102C	1.000	pfam_Kinetochore_Ndc80	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986				82	0	0	77	33	30
SMCHD1	0	genome.wustl.edu	37	18	2667021	2667021	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2667021	2667021	A	C	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	missense	c.415	p.N139H	1.000	superfamily_HATPase_ATP-bd	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				16	0	0	8	9	52.9412
SMCHD1	0	genome.wustl.edu	37	18	2771569	2771569	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2771569	2771569	C	T	SNP	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	nonsense	c.5005	p.R1669*	1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				64	0	0	51	25	32.8947
DSC2	0	genome.wustl.edu	37	18	28669436	28669436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	28669436	28669436	C	T	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	missense	c.596	p.R199H	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				86	0	0	63	39	38.2353
EMILIN2	0	genome.wustl.edu	37	18	2891625	2891625	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2891625	2891625	T	C	SNP	EMILIN2	ENST00000254528	human	ensembl	74_37	+1	known	silent	c.1500	p.R500	0.019	NULL	pfam_EMI_domain,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN2	HGNC	ENSG00000132205				152	1	0.653595	79	39	33.0508
DSG1	0	genome.wustl.edu	37	18	28925982	28925982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	28925982	28925982	G	A	SNP	DSG1	ENST00000257192	human	ensembl	74_37	+1	known	missense	c.1921	p.E641K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Desmoglein,prints_Cadherin,prints_Desmosomal_cadherin	-	no_errors	DSG1	HGNC	ENSG00000134760				62	0	0	35	26	42.623
DSG4	0	genome.wustl.edu	37	18	28971169	28971169	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	28971169	28971169	A	C	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	missense	c.813	p.K271N	0.979	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				96	0	0	58	27	31.7647
DSG2	0	genome.wustl.edu	37	18	29122786	29122786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	29122786	29122786	G	A	SNP	DSG2	ENST00000261590	human	ensembl	74_37	+1	known	missense	c.2305	p.E769K	0.994	prints_Desmoglein	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG2	HGNC	ENSG00000046604				96	0	0	52	25	32.4675
SLC25A52	0	genome.wustl.edu	37	18	29340392	29340392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	29340392	29340392	C	T	SNP	SLC25A52	ENST00000269205	human	ensembl	74_37	-1	known	missense	c.263	p.R88Q	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A52	HGNC	ENSG00000141437				184	0	0	97	43	30.7143
ENSG00000263606	0	genome.wustl.edu	37	18	2945859	2945859	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	2945859	2945859	A	G	SNP	ENSG00000263606	ENST00000581139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-737O24.3	Clone_based_vega_gene	ENSG00000263606				82	0	0	50	16	24.2424
RNF138	0	genome.wustl.edu	37	18	29693732	29693732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	29693732	29693732	C	A	SNP	RNF138	ENST00000261593	human	ensembl	74_37	+1	known	missense	c.301	p.H101N	1.000	NULL	pfam_Znf_MIZ,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF138	HGNC	ENSG00000134758				50	0	0	42	16	27.5862
WBP11P1	0	genome.wustl.edu	37	18	30093140	30093140	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	30093140	30093140	G	A	SNP	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				13	0	0	4	3	42.8571
CCDC178	0	genome.wustl.edu	37	18	30554590	30554590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	30554590	30554590	A	G	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.2516	p.V839A	1.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				69	0	0	56	21	27.2727
CCDC178	0	genome.wustl.edu	37	18	30803113	30803113	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	30803113	30803113	C	T	SNP	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	missense	c.1889	p.R630Q	0.000	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				31	0	0	40	9	18.3673
ASXL3	0	genome.wustl.edu	37	18	31323516	31323516	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	31323516	31323516	C	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3704	p.S1235Y	0.994	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				75	0	0	43	25	36.7647
NOL4	0	genome.wustl.edu	37	18	31599432	31599432	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	31599432	31599432	C	T	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	silent	c.906	p.Q302	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746				108	0	0	69	21	23.3333
DTNA	0	genome.wustl.edu	37	18	32431887	32431887	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	32431887	32431887	G	T	SNP	DTNA	ENST00000269190	human	ensembl	74_37	+1	known	missense	c.1449	p.K483N	1.000	pirsf_Distrobrevin	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,smart_Znf_ZZ,pirsf_Distrobrevin,pfscan_Znf_ZZ	-	no_errors	DTNA	HGNC	ENSG00000134769				62	0	0	35	11	23.913
ZSCAN30	0	genome.wustl.edu	37	18	32833515	32833515	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	32833515	32833515	T	G	SNP	ZSCAN30	ENST00000333206	human	ensembl	74_37	-1	known	missense	c.1384	p.I462L	0.984	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN30	HGNC	ENSG00000186814				91	0	0	62	29	31.8681
ZNF397	0	genome.wustl.edu	37	18	32837896	32837896	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	32837896	32837896	T	C	SNP	ZNF397	ENST00000261333	human	ensembl	74_37	+1	known	silent	c.822	p.F274	0.075	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF397	HGNC	ENSG00000186812				186	0	0	93	61	39.6104
SLC39A6	0	genome.wustl.edu	37	18	33689577	33689577	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	33689577	33689577	G	A	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	silent	c.2247	p.I749	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				98	0	0	62	44	41.5094
SLC39A6	0	genome.wustl.edu	37	18	33706546	33706546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	33706546	33706546	C	T	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.425	p.R142Q	0.294	NULL	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424				101	1	0.980392	66	19	22.3529
ELP2	0	genome.wustl.edu	37	18	33726217	33726217	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	33726217	33726217	G	A	SNP	ELP2	ENST00000358232	human	ensembl	74_37	+1	known	missense	c.998	p.R333Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ELP2	HGNC	ENSG00000134759				251	0	0	146	84	36.5217
MOCOS	0	genome.wustl.edu	37	18	33840070	33840070	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	33840070	33840070	A	C	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.2341	p.I781L	0.018	pfam_MoCF_Sase_C,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643				235	0	0	137	72	34.4498
TPGS2	0	genome.wustl.edu	37	18	34376819	34376819	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	34376819	34376819	A	C	SNP	TPGS2	ENST00000334295	human	ensembl	74_37	-1	known	silent	c.852	p.T284	0.001	NULL	smart_SMI1/KNR4_like_dom	-	no_errors	TPGS2	HGNC	ENSG00000134779				124	0	0	60	30	33.3333
COLEC12	0	genome.wustl.edu	37	18	346509	346509	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	346509	346509	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	silent	c.1113	p.C371	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				101	0	0	54	25	31.6456
COLEC12	0	genome.wustl.edu	37	18	347104	347104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	347104	347104	G	A	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.518	p.A173V	0.999	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				239	0	0	93	51	35.4167
COLEC12	0	genome.wustl.edu	37	18	348100	348100	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	348100	348100	T	G	SNP	COLEC12	ENST00000400256	human	ensembl	74_37	-1	known	missense	c.245	p.K82T	1.000	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	COLEC12	HGNC	ENSG00000158270				79	0	0	46	15	24.5902
CELF4	0	genome.wustl.edu	37	18	34854414	34854414	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	34854414	34854414	C	A	SNP	CELF4	ENST00000420428	human	ensembl	74_37	-1	known	missense	c.661	p.A221S	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF4	HGNC	ENSG00000101489				157	0	0	74	39	34.5133
PIK3C3	0	genome.wustl.edu	37	18	39537548	39537548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	39537548	39537548	G	A	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.82	p.G28R	1.000	smart_PI3K_C2_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				80	0	0	39	21	35
PIK3C3	0	genome.wustl.edu	37	18	39593453	39593453	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	39593453	39593453	A	C	SNP	PIK3C3	ENST00000262039	human	ensembl	74_37	+1	known	missense	c.1218	p.E406D	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,pirsf_PI3K_Vps34	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pirsf_PI3K_Vps34,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C3	HGNC	ENSG00000078142				109	0	0	88	49	35.7664
SETBP1	0	genome.wustl.edu	37	18	42532601	42532601	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	42532601	42532601	C	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.3296	p.S1099Y	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				111	0	0	51	23	31.0811
EPG5	0	genome.wustl.edu	37	18	43459029	43459029	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	43459029	43459029	C	A	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.5818	p.D1940Y	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				112	0	0	66	34	34
EPG5	0	genome.wustl.edu	37	18	43502362	43502362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	43502362	43502362	C	T	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.3043	p.A1015T	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				79	0	0	50	19	27.5362
EPG5	0	genome.wustl.edu	37	18	43519684	43519684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	43519684	43519684	A	G	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.1981	p.Y661H	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223				65	0	0	29	18	38.2979
TCEB3B	0	genome.wustl.edu	37	18	44561339	44561339	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	44561339	44561339	G	A	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.297	p.F99	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181				109	0	0	48	25	34.2466
HDHD2	0	genome.wustl.edu	37	18	44662730	44662730	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	44662730	44662730	G	A	SNP	HDHD2	ENST00000300605	human	ensembl	74_37	-1	known	silent	c.81	p.G27	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_HAD-SF_hydro_IIA_hyp2,tigrfam_HAD-SF_hydro_IIA	-	no_errors	HDHD2	HGNC	ENSG00000167220				104	0	0	39	23	37.0968
SKOR2	0	genome.wustl.edu	37	18	44775126	44775126	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	44775126	44775126	G	A	SNP	SKOR2	ENST00000400404	human	ensembl	74_37	-1	known	silent	c.429	p.F143	1.000	superfamily_SAND_dom-like	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR2	HGNC	ENSG00000215474				8	0	0	5	4	44.4444
RPL17	0	genome.wustl.edu	37	18	47014895	47014895	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	47014895	47014895	C	T	SNP	RPL17	ENST00000418495	human	ensembl	74_37	-1	known	silent	c.549	p.R183	1.000	NULL	pfam_Ribosomal_L22,superfamily_Ribosomal_L22,tigrfam_Ribosomal_L22/L17_euk/arc	-	no_errors	RPL17	HGNC	ENSG00000265681				40	0	0	21	6	22.2222
MAPK4	0	genome.wustl.edu	37	18	48241532	48241532	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	48241532	48241532	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	silent	c.630	p.I210	0.103	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				104	0	0	41	20	32.7869
POLI	0	genome.wustl.edu	37	18	51820532	51820532	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	51820532	51820532	G	T	SNP	POLI	ENST00000579534	human	ensembl	74_37	+1	known	nonsense	c.1918	p.E640*	1.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751				49	0	0	11	15	57.6923
STARD6	0	genome.wustl.edu	37	18	51851142	51851142	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	51851142	51851142	A	C	SNP	STARD6	ENST00000307844	human	ensembl	74_37	-1	known	missense	c.583	p.F195V	0.204	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	STARD6	HGNC	ENSG00000174448				70	0	0	27	40	59.7015
C18orf54	0	genome.wustl.edu	37	18	51886948	51886948	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	51886948	51886948	G	A	SNP	C18orf54	ENST00000300091	human	ensembl	74_37	+1	known	silent	c.6	p.A2	0.970	NULL	NULL	-	no_errors	C18orf54	HGNC	ENSG00000166845				108	1	0.917431	30	37	55.2239
EPB41L3	0	genome.wustl.edu	37	18	5415967	5415967	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	5415967	5415967	G	T	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.1917	p.I639	1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				117	0	0	65	24	26.9663
NARS	0	genome.wustl.edu	37	18	55282941	55282941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	55282941	55282941	C	T	SNP	NARS	ENST00000256854	human	ensembl	74_37	-1	known	missense	c.274	p.E92K	1.000	superfamily_NA-bd_OB-fold	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-ligase	-	no_errors	NARS	HGNC	ENSG00000134440				122	0	0	41	30	42.2535
ATP8B1	0	genome.wustl.edu	37	18	55336558	55336558	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	55336558	55336558	C	A	SNP	ATP8B1	ENST00000283684	human	ensembl	74_37	-1	known	missense	c.2089	p.D697Y	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B1	HGNC	ENSG00000081923				62	0	0	28	17	37.7778
ALPK2	0	genome.wustl.edu	37	18	56203437	56203437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	56203437	56203437	G	T	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.3982	p.L1328I	0.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				128	0	0	69	9	11.5385
ALPK2	0	genome.wustl.edu	37	18	56204821	56204821	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	56204821	56204821	T	C	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	silent	c.2598	p.T866	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				70	0	0	23	21	47.7273
ENSG00000267257	0	genome.wustl.edu	37	18	56205533	56205533	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	56205533	56205533	G	T	SNP	ENSG00000267257	ENST00000591360	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-1151B14.4	Clone_based_vega_gene	ENSG00000267257				43	0	0	10	9	47.3684
LMAN1	0	genome.wustl.edu	37	18	57013239	57013239	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	57013239	57013239	A	C	SNP	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	nonsense	c.867	p.Y289*	0.977	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				102	0	0	25	36	59.0164
TMEM200C	0	genome.wustl.edu	37	18	5890224	5890224	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	5890224	5890224	T	G	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	missense	c.1839	p.E613D	0.914	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				150	0	0	65	42	39.2523
KIAA1468	0	genome.wustl.edu	37	18	59895681	59895681	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	59895681	59895681	A	G	SNP	KIAA1468	ENST00000256858	human	ensembl	74_37	+1	known	missense	c.1298	p.N433S	0.013	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444				115	0	0	42	30	41.6667
KDSR	0	genome.wustl.edu	37	18	61022741	61022741	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61022741	61022741	A	G	SNP	KDSR	ENST00000406396	human	ensembl	74_37	-1	known	missense	c.311	p.V104A	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	KDSR	HGNC	ENSG00000119537				44	0	0	24	11	31.4286
VPS4B	0	genome.wustl.edu	37	18	61060766	61060766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61060766	61060766	C	T	SNP	VPS4B	ENST00000238497	human	ensembl	74_37	-1	known	missense	c.1109	p.R370Q	0.031	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_MIT,pfam_IstB_ATP-bd,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase	-	no_errors	VPS4B	HGNC	ENSG00000119541				101	0	0	15	30	66.6667
SERPINB13	0	genome.wustl.edu	37	18	61261591	61261591	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61261591	61261591	A	C	SNP	SERPINB13	ENST00000344731	human	ensembl	74_37	+1	known	missense	c.475	p.K159Q	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB13	HGNC	ENSG00000197641				62	0	0	18	14	43.75
SERPINB2	0	genome.wustl.edu	37	18	61558832	61558832	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61558832	61558832	G	T	SNP	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	missense	c.154	p.D52Y	0.997	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				48	0	0	11	18	62.069
SERPINB2	0	genome.wustl.edu	37	18	61570322	61570322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61570322	61570322	C	T	SNP	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	missense	c.1031	p.S344L	0.854	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				112	0	0	30	28	48.2759
SERPINB10	0	genome.wustl.edu	37	18	61582874	61582874	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	61582874	61582874	T	G	SNP	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	missense	c.130	p.L44V	0.975	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550				86	0	0	27	31	53.4483
CDH7	0	genome.wustl.edu	37	18	63430218	63430218	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	63430218	63430218	G	A	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.140	p.R47H	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				76	0	0	33	5	13.1579
CDH19	0	genome.wustl.edu	37	18	64176344	64176344	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	64176344	64176344	G	A	SNP	CDH19	ENST00000262150	human	ensembl	74_37	-1	known	silent	c.1716	p.D572	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH19	HGNC	ENSG00000071991				177	1	0.561798	54	64	54.2373
RPL6P27	0	genome.wustl.edu	37	18	6462299	6462299	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6462299	6462299	T	G	SNP	RPL6P27	ENST00000583065	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RPL6P27	HGNC	ENSG00000235552				57	0	0	45	19	29.6875
DSEL	0	genome.wustl.edu	37	18	65179358	65179358	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	65179358	65179358	T	C	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.2518	p.K840E	0.994	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				263	1	0.378788	74	85	53.4591
DSEL	0	genome.wustl.edu	37	18	65181050	65181050	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	65181050	65181050	T	C	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.826	p.N276D	0.999	superfamily_Chondroitin_lyas	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				155	0	0	36	43	54.4304
ENOSF1	0	genome.wustl.edu	37	18	674310	674310	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	674310	674310	T	G	SNP	ENOSF1	ENST00000340116	human	ensembl	74_37	-1	known	missense	c.1348	p.N450H	0.979	NULL	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199				332	0	0	209	104	33.2268
SOCS6	0	genome.wustl.edu	37	18	67993118	67993118	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	67993118	67993118	C	A	SNP	SOCS6	ENST00000397942	human	ensembl	74_37	+1	known	missense	c.1214	p.S405Y	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS6	HGNC	ENSG00000170677				121	0	0	29	40	57.971
ARHGAP28	0	genome.wustl.edu	37	18	6837248	6837248	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6837248	6837248	C	T	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	silent	c.378	p.I126	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				21	0	0	11	9	45
ARHGAP28	0	genome.wustl.edu	37	18	6889954	6889954	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6889954	6889954	T	G	SNP	ARHGAP28	ENST00000400091	human	ensembl	74_37	+1	known	missense	c.1604	p.I535S	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP28	HGNC	ENSG00000088756				146	0	0	146	14	8.75
LAMA1	0	genome.wustl.edu	37	18	6943388	6943388	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6943388	6943388	A	G	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8858	p.V2953A	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				133	0	0	60	40	40
LAMA1	0	genome.wustl.edu	37	18	6956679	6956679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6956679	6956679	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8050	p.D2684N	0.000	NULL	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				102	0	0	59	29	32.9545
LOC101927188	0	genome.wustl.edu	37	18	6956796	6956796	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6956796	6956796	T	C	SNP	LOC101927188	ENST00000584722	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-781P6.1	Clone_based_vega_gene	ENSG00000265069				47	0	0	17	13	43.3333
LAMA1	0	genome.wustl.edu	37	18	6959410	6959410	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6959410	6959410	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.7708	p.L2570I	0.189	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				153	0	0	83	43	34.127
LAMA1	0	genome.wustl.edu	37	18	6976071	6976071	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6976071	6976071	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.6354	p.V2118	0.009	pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				114	0	0	117	20	14.5985
LAMA1	0	genome.wustl.edu	37	18	6986227	6986227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6986227	6986227	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.5288	p.A1763V	0.004	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				215	0	0	116	69	37.2973
LAMA1	0	genome.wustl.edu	37	18	6986331	6986331	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	6986331	6986331	T	C	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.5184	p.L1728	0.004	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				92	0	0	65	22	25.2874
CNDP1	0	genome.wustl.edu	37	18	72229308	72229308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	72229308	72229308	G	A	SNP	CNDP1	ENST00000358821	human	ensembl	74_37	+1	known	missense	c.493	p.D165N	1.000	pfam_Peptidase_M20,pirsf_GSH_degradosome_DUG1	pfam_Peptidase_M20,pfam_Peptidase_M20_dimer,pirsf_GSH_degradosome_DUG1	-	no_errors	CNDP1	HGNC	ENSG00000150656				108	0	0	34	30	46.875
ZNF236	0	genome.wustl.edu	37	18	74627729	74627729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	74627729	74627729	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.3182	p.R1061Q	0.938	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				99	0	0	22	17	43.5897
SALL3	0	genome.wustl.edu	37	18	76753496	76753496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	76753496	76753496	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.1505	p.S502L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				33	0	0	10	13	56.5217
SALL3	0	genome.wustl.edu	37	18	76754848	76754848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	76754848	76754848	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.2857	p.R953C	0.595	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				14	0	0	6	9	60
NFATC1	0	genome.wustl.edu	37	18	77211696	77211696	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	77211696	77211696	C	T	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	silent	c.1783	p.L595	0.999	superfamily_Ig_E-set,smart_IPT,prints_NFAT	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				64	0	0	16	12	42.8571
NFATC1	0	genome.wustl.edu	37	18	77246279	77246279	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	77246279	77246279	T	G	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	missense	c.2124	p.D708E	0.967	superfamily_Ig_E-set	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				337	0	0	78	79	50.3185
CTDP1	0	genome.wustl.edu	37	18	77456022	77456022	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	77456022	77456022	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	silent	c.444	p.A148	0.465	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				74	0	0	15	11	42.3077
KCNG2	0	genome.wustl.edu	37	18	77623869	77623869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	77623869	77623869	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.202	p.E68K	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				24	0	0	10	4	28.5714
PTPRM	0	genome.wustl.edu	37	18	7888319	7888319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	7888319	7888319	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.412	p.R138C	0.122	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				112	0	0	69	30	30.303
PTPRM	0	genome.wustl.edu	37	18	8085834	8085834	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	8085834	8085834	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.1717	p.P573S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				117	0	0	71	31	30.3922
PTPRM	0	genome.wustl.edu	37	18	8387085	8387085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	8387085	8387085	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.4063	p.R1355W	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482				152	0	0	79	38	32.4786
RAB12	0	genome.wustl.edu	37	18	8638257	8638257	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	8638257	8638257	T	C	SNP	RAB12	ENST00000329286	human	ensembl	74_37	+1	known	silent	c.732	p.C244	1.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB12	HGNC	ENSG00000206418				49	0	0	27	11	28.9474
ADCYAP1	0	genome.wustl.edu	37	18	909593	909593	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	909593	909593	A	C	SNP	ADCYAP1	ENST00000450565	human	ensembl	74_37	+1	known	missense	c.488	p.K163T	1.000	NULL	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	-	no_errors	ADCYAP1	HGNC	ENSG00000141433				253	0	0	170	75	30.6122
ANKRD12	0	genome.wustl.edu	37	18	9255539	9255539	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	9255539	9255539	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	silent	c.2274	p.S758	0.943	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				38	0	0	41	21	33.871
ANKRD12	0	genome.wustl.edu	37	18	9255701	9255701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	9255701	9255701	A	C	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.2436	p.E812D	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				67	0	0	46	28	37.8378
COL5A3	0	genome.wustl.edu	37	19	10071116	10071116	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10071116	10071116	C	A	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	nonsense	c.5209	p.E1737*	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				123	0	0	59	25	29.7619
RDH8	0	genome.wustl.edu	37	19	10127761	10127761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10127761	10127761	G	T	SNP	RDH8	ENST00000591589	human	ensembl	74_37	+1	known	missense	c.192	p.K64N	0.997	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH8	HGNC	ENSG00000080511				43	0	0	18	7	28
DNMT1	0	genome.wustl.edu	37	19	10259675	10259675	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10259675	10259675	A	G	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.2605	p.S869P	0.003	pirsf_DNA_C5-MeTrfase_1_euk,pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				84	0	0	37	20	35.0877
DNMT1	0	genome.wustl.edu	37	19	10267136	10267136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10267136	10267136	C	T	SNP	DNMT1	ENST00000359526	human	ensembl	74_37	-1	known	missense	c.1330	p.E444K	0.999	pirsf_DNA_C5-MeTrfase_1_euk,pfam_Cytosine_MeTrfase1_RFD	pirsf_DNA_C5-MeTrfase_1_euk,pfam_C5_MeTfrase,pfam_BAH_dom,pfam_Cytosine_MeTrfase1_RFD,pfam_DMAP1-bd,pfam_Znf_CXXC,smart_BAH_dom,prints_C5_MeTfrase,pfscan_BAH_dom,pfscan_Znf_CXXC	-	no_errors	DNMT1	HGNC	ENSG00000130816				107	0	0	66	25	27.4725
PDE4A	0	genome.wustl.edu	37	19	10528390	10528390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10528390	10528390	C	T	SNP	PDE4A	ENST00000380702	human	ensembl	74_37	+1	known	missense	c.103	p.R35C	0.968	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				20	0	0	9	7	43.75
ABCA7	0	genome.wustl.edu	37	19	1053340	1053340	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	1053340	1053340	T	G	SNP	ABCA7	ENST00000263094	human	ensembl	74_37	+1	known	missense	c.3233	p.L1078R	0.991	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_GroES-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA7	HGNC	ENSG00000064687				49	0	0	14	10	41.6667
PDE4A	0	genome.wustl.edu	37	19	10561292	10561292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10561292	10561292	G	A	SNP	PDE4A	ENST00000352831	human	ensembl	74_37	+1	known	missense	c.634	p.G212S	0.871	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE4A	HGNC	ENSG00000065989				30	0	0	10	6	37.5
KEAP1	0	genome.wustl.edu	37	19	10610561	10610561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10610561	10610561	C	T	SNP	KEAP1	ENST00000171111	human	ensembl	74_37	-1	known	missense	c.149	p.R50H	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KEAP1	HGNC	ENSG00000079999				247	0	0	104	67	39.1813
DNM2	0	genome.wustl.edu	37	19	10886518	10886518	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10886518	10886518	G	A	SNP	DNM2	ENST00000314646	human	ensembl	74_37	+1	known	silent	c.525	p.T175	0.066	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM2	HGNC	ENSG00000079805				185	0	0	96	50	34.2466
DNM2	0	genome.wustl.edu	37	19	10908128	10908128	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	10908128	10908128	G	A	SNP	DNM2	ENST00000314646	human	ensembl	74_37	+1	known	silent	c.1269	p.P423	0.124	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM2	HGNC	ENSG00000079805				103	0	0	47	21	30.8824
DOCK6	0	genome.wustl.edu	37	19	11352862	11352862	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11352862	11352862	G	T	SNP	DOCK6	ENST00000294618	human	ensembl	74_37	-1	known	missense	c.1502	p.S501Y	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N	-	no_errors	DOCK6	HGNC	ENSG00000130158				17	0	0	10	6	37.5
RGL3	0	genome.wustl.edu	37	19	11516087	11516087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11516087	11516087	G	A	SNP	RGL3	ENST00000393423	human	ensembl	74_37	-1	known	missense	c.1012	p.R338W	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517				22	0	0	13	4	23.5294
ZNF627	0	genome.wustl.edu	37	19	11728369	11728369	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11728369	11728369	C	T	SNP	ZNF627	ENST00000361113	human	ensembl	74_37	+1	known	nonsense	c.1051	p.R351*	0.044	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF627	HGNC	ENSG00000198551				90	0	0	47	23	32.8571
ZNF627	0	genome.wustl.edu	37	19	11728453	11728453	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11728453	11728453	C	T	SNP	ZNF627	ENST00000361113	human	ensembl	74_37	+1	known	nonsense	c.1135	p.R379*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF627	HGNC	ENSG00000198551				88	0	0	54	25	31.6456
ZNF833P	0	genome.wustl.edu	37	19	11796214	11796214	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11796214	11796214	G	T	SNP	ZNF833P	ENST00000344893	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF833P	HGNC	ENSG00000197332				65	0	0	41	27	39.7059
ZNF833P	0	genome.wustl.edu	37	19	11796286	11796286	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11796286	11796286	G	A	SNP	ZNF833P	ENST00000344893	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF833P	HGNC	ENSG00000197332				48	0	0	20	16	44.4444
ZNF823	0	genome.wustl.edu	37	19	11832652	11832652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11832652	11832652	C	T	SNP	ZNF823	ENST00000341191	human	ensembl	74_37	-1	known	missense	c.1697	p.R566H	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF823	HGNC	ENSG00000197933				107	0	0	67	38	36.1905
ZNF441	0	genome.wustl.edu	37	19	11891955	11891955	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11891955	11891955	G	T	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1316	p.R439I	0.475	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				67	0	0	43	26	37.6812
ZNF441	0	genome.wustl.edu	37	19	11891986	11891986	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11891986	11891986	T	C	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	silent	c.1347	p.C449	0.967	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				71	0	0	59	28	32.1839
ZNF441	0	genome.wustl.edu	37	19	11892539	11892539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11892539	11892539	G	A	SNP	ZNF441	ENST00000357901	human	ensembl	74_37	+1	known	missense	c.1900	p.E634K	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF441	HGNC	ENSG00000197044				68	0	0	47	23	32.8571
ZNF491	0	genome.wustl.edu	37	19	11916972	11916972	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11916972	11916972	G	A	SNP	ZNF491	ENST00000323169	human	ensembl	74_37	+1	known	silent	c.204	p.Q68	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC	ENSG00000177599				67	0	0	62	31	33.3333
ZNF491	0	genome.wustl.edu	37	19	11917544	11917544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11917544	11917544	G	A	SNP	ZNF491	ENST00000323169	human	ensembl	74_37	+1	known	missense	c.776	p.R259Q	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF491	HGNC	ENSG00000177599				93	0	0	66	29	30.5263
ZNF440	0	genome.wustl.edu	37	19	11942676	11942676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11942676	11942676	G	A	SNP	ZNF440	ENST00000304060	human	ensembl	74_37	+1	known	missense	c.685	p.E229K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295				145	0	0	73	40	35.3982
ZNF439	0	genome.wustl.edu	37	19	11978700	11978700	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	11978700	11978700	T	C	SNP	ZNF439	ENST00000304030	human	ensembl	74_37	+1	known	silent	c.816	p.C272	0.518	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF439	HGNC	ENSG00000171291				129	0	0	71	35	33.0189
ZNF69	0	genome.wustl.edu	37	19	12016269	12016269	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12016269	12016269	A	C	SNP	ZNF69	ENST00000429654	human	ensembl	74_37	+1	known	missense	c.1057	p.M353L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429				144	0	0	90	46	33.8235
ZNF700	0	genome.wustl.edu	37	19	12060493	12060493	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12060493	12060493	C	T	SNP	ZNF700	ENST00000254321	human	ensembl	74_37	+1	known	nonsense	c.1654	p.R552*	0.033	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF700	HGNC	ENSG00000196757				113	0	0	68	37	35.2381
ZNF433	0	genome.wustl.edu	37	19	12125892	12125892	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12125892	12125892	T	G	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	missense	c.1790	p.K597T	0.984	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				136	0	0	71	39	35.4545
ZNF878	0	genome.wustl.edu	37	19	12155208	12155208	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12155208	12155208	C	A	SNP	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	missense	c.1149	p.E383D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				89	0	0	68	28	29.1667
ZNF878	0	genome.wustl.edu	37	19	12155494	12155494	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12155494	12155494	G	A	SNP	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	missense	c.863	p.S288L	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				115	0	0	64	39	37.8641
ZNF878	0	genome.wustl.edu	37	19	12155980	12155980	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12155980	12155980	T	G	SNP	ZNF878	ENST00000602107	human	ensembl	74_37	-1	known	missense	c.377	p.Q126P	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446				34	0	0	16	6	27.2727
ZNF844	0	genome.wustl.edu	37	19	12187077	12187077	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12187077	12187077	A	G	SNP	ZNF844	ENST00000439326	human	ensembl	74_37	+1	known	missense	c.1142	p.D381G	0.098	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF844	HGNC	ENSG00000223547				32	0	0	12	5	29.4118
ZNF20	0	genome.wustl.edu	37	19	12243483	12243483	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12243483	12243483	A	C	SNP	ZNF20	ENST00000334213	human	ensembl	74_37	-1	known	nonsense	c.1518	p.Y506*	0.061	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF20	HGNC	ENSG00000132010				278	0	0	199	28	12.3348
ZNF625	0	genome.wustl.edu	37	19	12256532	12256532	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12256532	12256532	G	A	SNP	ZNF625	ENST00000439556	human	ensembl	74_37	-1	known	silent	c.699	p.S233	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF625	HGNC	ENSG00000257591				183	0	0	80	41	33.8843
ZNF44	0	genome.wustl.edu	37	19	12361094	12361094	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12361094	12361094	G	A	SNP	ZNF44	ENST00000426973	human	ensembl	74_37	-1	known	silent	c.123	p.D41	0.997	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857				54	0	0	26	16	38.0952
ZNF44	0	genome.wustl.edu	37	19	12384420	12384420	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12384420	12384420	C	A	SNP	ZNF44	ENST00000393337	human	ensembl	74_37	-1	known	missense	c.794	p.R265I	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857				183	0	0	121	54	30.8571
ZNF799	0	genome.wustl.edu	37	19	12502322	12502322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12502322	12502322	C	T	SNP	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	missense	c.890	p.R297Q	0.003	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				237	0	0	122	67	35.4497
ZNF709	0	genome.wustl.edu	37	19	12575681	12575681	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12575681	12575681	C	T	SNP	ZNF709	ENST00000397732	human	ensembl	74_37	-1	known	missense	c.1055	p.R352Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_Znf_C2H2_jaz,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF709	HGNC	ENSG00000242852				162	0	0	110	56	33.7349
ZNF564	0	genome.wustl.edu	37	19	12637684	12637684	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12637684	12637684	C	A	SNP	ZNF564	ENST00000339282	human	ensembl	74_37	-1	known	missense	c.1238	p.R413I	0.853	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709				252	0	0	147	78	34.6667
ZNF490	0	genome.wustl.edu	37	19	12691588	12691588	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12691588	12691588	C	T	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	missense	c.1301	p.R434Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				170	0	0	84	47	35.8779
ZNF490	0	genome.wustl.edu	37	19	12692305	12692305	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	12692305	12692305	T	G	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	missense	c.584	p.K195T	0.005	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				159	0	0	87	43	33.0769
RAD23A	0	genome.wustl.edu	37	19	13060204	13060204	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13060204	13060204	G	T	SNP	RAD23A	ENST00000586534	human	ensembl	74_37	+1	known	missense	c.795	p.E265D	0.997	pfam_XPC-bd,superfamily_XPC-bd,smart_STI1_HS-bd,prints_Rad23,tigrfam_Rad23	pfam_XPC-bd,pfam_UBA/Ts_N,pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,superfamily_XPC-bd,superfamily_UBA-like,smart_Ubiquitin_dom,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,prints_Rad23,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup,tigrfam_Rad23	-	no_errors	RAD23A	HGNC	ENSG00000179262				173	0	0	63	24	27.5862
TRMT1	0	genome.wustl.edu	37	19	13221113	13221113	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13221113	13221113	C	A	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.878	p.R293I	0.999	pfam_TRM1,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				25	0	0	12	6	33.3333
CACNA1A	0	genome.wustl.edu	37	19	13372361	13372361	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13372361	13372361	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.4153	p.L1385	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				16	0	0	5	11	68.75
CACNA1A	0	genome.wustl.edu	37	19	13373570	13373570	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13373570	13373570	A	G	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.4067	p.I1356T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				23	0	0	20	8	28.5714
CACNA1A	0	genome.wustl.edu	37	19	13409910	13409910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13409910	13409910	T	C	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.2537	p.D846G	0.979	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				24	0	0	20	14	41.1765
CACNA1A	0	genome.wustl.edu	37	19	13470614	13470614	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13470614	13470614	C	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	splice_site	c.785-1	e6-1	1.000	-	-	-	no_errors	CACNA1A	HGNC	ENSG00000141837				10	0	0	0	4	100
ZSWIM4	0	genome.wustl.edu	37	19	13928150	13928150	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	13928150	13928150	C	A	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.1301	p.T434K	0.391	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				152	0	0	60	31	34.0659
LPHN1	0	genome.wustl.edu	37	19	14267940	14267940	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	14267940	14267940	G	A	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	silent	c.2778	p.F926	0.993	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				65	0	0	37	15	28.8462
APC2	0	genome.wustl.edu	37	19	1453554	1453554	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	1453554	1453554	C	A	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.357	p.S119R	0.001	NULL	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				47	0	0	16	8	33.3333
APC2	0	genome.wustl.edu	37	19	1466116	1466116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	1466116	1466116	G	A	SNP	APC2	ENST00000233607	human	ensembl	74_37	+1	known	missense	c.2816	p.R939H	0.100	NULL	pfam_APC_basic_dom,pfam_APC_dom,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo	-	no_errors	APC2	HGNC	ENSG00000115266				25	0	0	7	6	46.1538
EMR3	0	genome.wustl.edu	37	19	14765862	14765862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	14765862	14765862	G	A	SNP	EMR3	ENST00000253673	human	ensembl	74_37	-1	known	missense	c.509	p.S170L	0.005	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_CD97	-	no_errors	EMR3	HGNC	ENSG00000131355				131	0	0	79	33	29.4643
ZNF333	0	genome.wustl.edu	37	19	14829800	14829800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	14829800	14829800	G	A	SNP	ZNF333	ENST00000292530	human	ensembl	74_37	+1	known	missense	c.1661	p.R554Q	0.989	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF333	HGNC	ENSG00000160961				98	0	0	44	29	39.726
OR7A10	0	genome.wustl.edu	37	19	14951778	14951778	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	14951778	14951778	G	T	SNP	OR7A10	ENST00000248058	human	ensembl	74_37	-1	known	missense	c.912	p.F304L	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A10	HGNC	ENSG00000127515				105	0	0	51	15	22.7273
SLC1A6	0	genome.wustl.edu	37	19	15063790	15063790	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15063790	15063790	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	silent	c.1449	p.V483	0.978	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				171	0	0	91	55	37.6712
SLC1A6	0	genome.wustl.edu	37	19	15083562	15083562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15083562	15083562	C	T	SNP	SLC1A6	ENST00000221742	human	ensembl	74_37	-1	known	missense	c.161	p.R54H	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143				59	0	0	27	13	32.5
CCDC105	0	genome.wustl.edu	37	19	15132651	15132651	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15132651	15132651	G	T	SNP	CCDC105	ENST00000292574	human	ensembl	74_37	+1	known	nonsense	c.1171	p.E391*	0.961	pfam_Tektin	pfam_Tektin	-	no_errors	CCDC105	HGNC	ENSG00000160994				105	0	0	70	30	30
CASP14	0	genome.wustl.edu	37	19	15164409	15164409	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15164409	15164409	C	T	SNP	CASP14	ENST00000221740	human	ensembl	74_37	+1	known	silent	c.144	p.F48	0.971	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_ICE_p20	pfam_Pept_C14_caspase,smart_Pept_C14A_p45_core,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP14	HGNC	ENSG00000105141				158	0	0	86	47	35.3383
ILVBL	0	genome.wustl.edu	37	19	15226687	15226687	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15226687	15226687	C	T	SNP	ILVBL	ENST00000263383	human	ensembl	74_37	-1	known	missense	c.1588	p.E530K	1.000	pfam_TPP_enzyme-bd_C	pfam_Thiamin_PyroP_enz_TPP-bd_dom,pfam_TPP_enzyme-bd_C,pfam_Thiamin_PyroP_enz_cen_dom	-	no_errors	ILVBL	HGNC	ENSG00000105135				89	0	0	65	14	17.7215
AKAP8L	0	genome.wustl.edu	37	19	15510111	15510111	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15510111	15510111	A	G	SNP	AKAP8L	ENST00000397410	human	ensembl	74_37	-1	known	splice_site	c.1157+2	e9+2	1.000	-	-	-	no_errors	AKAP8L	HGNC	ENSG00000011243				70	0	0	37	10	21.2766
CYP4F22	0	genome.wustl.edu	37	19	15658949	15658949	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15658949	15658949	T	G	SNP	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	silent	c.1167	p.T389	0.791	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				260	0	0	173	14	7.48663
CYP4F3	0	genome.wustl.edu	37	19	15758136	15758136	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15758136	15758136	T	C	SNP	CYP4F3	ENST00000221307	human	ensembl	74_37	+1	known	splice_site	c.525+2	e4+2	1.000	-	-	-	no_errors	CYP4F3	HGNC	ENSG00000186529				198	0	0	104	43	29.2517
OR10H2	0	genome.wustl.edu	37	19	15839024	15839024	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15839024	15839024	G	A	SNP	OR10H2	ENST00000305899	human	ensembl	74_37	+1	known	silent	c.171	p.T57	0.392	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H2	HGNC	ENSG00000171942				223	0	0	100	61	37.8882
OR10H5	0	genome.wustl.edu	37	19	15905629	15905629	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15905629	15905629	C	T	SNP	OR10H5	ENST00000308940	human	ensembl	74_37	+1	known	silent	c.771	p.S257	0.229	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H5	HGNC	ENSG00000172519				102	0	0	44	25	36.2319
OR10H5	0	genome.wustl.edu	37	19	15905661	15905661	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15905661	15905661	C	A	SNP	OR10H5	ENST00000308940	human	ensembl	74_37	+1	known	missense	c.803	p.S268Y	0.008	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H5	HGNC	ENSG00000172519				98	0	0	48	29	37.6623
CYP4F2	0	genome.wustl.edu	37	19	15990222	15990222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	15990222	15990222	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.1331	p.R444H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				246	0	0	144	68	32.0755
CYP4F11	0	genome.wustl.edu	37	19	16045053	16045053	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	16045053	16045053	T	C	SNP	CYP4F11	ENST00000248041	human	ensembl	74_37	-1	known	missense	c.166	p.K56E	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F11	HGNC	ENSG00000171903				105	0	0	53	37	41.1111
TCF3	0	genome.wustl.edu	37	19	1615638	1615638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	1615638	1615638	C	T	SNP	TCF3	ENST00000395423	human	ensembl	74_37	-1	novel	missense	c.1480	p.A494T	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCF3	HGNC	ENSG00000071564				86	0	0	37	26	41.2698
RAB8A	0	genome.wustl.edu	37	19	16240385	16240385	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	16240385	16240385	G	T	SNP	RAB8A	ENST00000300935	human	ensembl	74_37	+1	known	missense	c.502	p.D168Y	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB8A	HGNC	ENSG00000167461				288	0	0	146	72	33.0275
EPS15L1	0	genome.wustl.edu	37	19	16514555	16514555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	16514555	16514555	C	T	SNP	EPS15L1	ENST00000455140	human	ensembl	74_37	-1	known	missense	c.1615	p.E539K	1.000	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_dom,smart_Ubiquitin-int_motif,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527				139	0	0	90	38	29.6875
CALR3	0	genome.wustl.edu	37	19	16601326	16601326	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	16601326	16601326	C	T	SNP	CALR3	ENST00000269881	human	ensembl	74_37	-1	known	silent	c.249	p.P83	0.023	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,pirsf_Calreticulin	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,pirsf_Calreticulin,prints_Calret/calnex	-	no_errors	CALR3	HGNC	ENSG00000269058				220	0	0	81	43	34.6774
CPAMD8	0	genome.wustl.edu	37	19	17010303	17010303	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17010303	17010303	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.4972	p.L1658F	0.995	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				62	0	0	33	9	21.4286
CPAMD8	0	genome.wustl.edu	37	19	17091335	17091335	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17091335	17091335	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	silent	c.1698	p.P566	0.014	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				123	0	0	53	36	40.4494
CPAMD8	0	genome.wustl.edu	37	19	17091474	17091474	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17091474	17091474	G	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.1559	p.S520Y	0.900	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				143	0	0	47	25	34.7222
CPAMD8	0	genome.wustl.edu	37	19	17119328	17119328	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17119328	17119328	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	silent	c.687	p.K229	0.993	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				82	0	0	38	19	33.3333
MYO9B	0	genome.wustl.edu	37	19	17298844	17298844	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17298844	17298844	A	G	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	missense	c.2678	p.Y893C	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				12	0	0	2	3	60
MYO9B	0	genome.wustl.edu	37	19	17308628	17308628	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17308628	17308628	C	T	SNP	MYO9B	ENST00000594824	human	ensembl	74_37	+1	known	silent	c.4074	p.S1358	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC	ENSG00000099331				138	0	0	66	25	27.4725
FAM129C	0	genome.wustl.edu	37	19	17641676	17641676	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17641676	17641676	C	T	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	silent	c.261	p.S87	0.159	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				80	0	0	31	14	31.1111
FAM129C	0	genome.wustl.edu	37	19	17651357	17651357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17651357	17651357	G	A	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	missense	c.1229	p.R410H	0.025	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				28	0	0	10	7	41.1765
FAM129C	0	genome.wustl.edu	37	19	17654405	17654405	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17654405	17654405	T	G	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	missense	c.1612	p.F538V	0.663	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				60	0	0	24	18	42.8571
JAK3	0	genome.wustl.edu	37	19	17951088	17951088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17951088	17951088	C	T	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1205	p.R402H	0.998	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				55	0	0	26	15	36.5854
JAK3	0	genome.wustl.edu	37	19	17955206	17955206	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17955206	17955206	C	A	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.21	p.E7D	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				44	0	0	10	4	28.5714
SLC5A5	0	genome.wustl.edu	37	19	17983487	17983487	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	17983487	17983487	T	C	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	splice_site	c.357+2	e1+2	1.000	-	-	-	no_errors	SLC5A5	HGNC	ENSG00000105641				68	0	0	18	10	35.7143
ATP8B3	0	genome.wustl.edu	37	19	1800271	1800271	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	1800271	1800271	A	G	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.1330	p.S444P	0.998	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270				64	0	0	40	13	24.5283
MAST3	0	genome.wustl.edu	37	19	18239715	18239715	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	18239715	18239715	G	A	SNP	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	missense	c.1090	p.E364K	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				124	0	0	59	32	35.1648
MAST3	0	genome.wustl.edu	37	19	18248128	18248128	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	18248128	18248128	C	T	SNP	MAST3	ENST00000262811	human	ensembl	74_37	+1	known	silent	c.1965	p.F655	0.744	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST3	HGNC	ENSG00000099308				124	0	0	66	31	31.9588
PIK3R2	0	genome.wustl.edu	37	19	18277075	18277075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	18277075	18277075	C	T	SNP	PIK3R2	ENST00000222254	human	ensembl	74_37	+1	known	missense	c.1522	p.R508C	0.983	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R2	HGNC	ENSG00000105647				93	0	0	48	22	31.4286
SUGP2	0	genome.wustl.edu	37	19	19120788	19120788	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	19120788	19120788	C	T	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	silent	c.2214	p.P738	0.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				249	0	0	124	51	29.1429
ZNF101	0	genome.wustl.edu	37	19	19790703	19790703	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	19790703	19790703	G	T	SNP	ZNF101	ENST00000318110	human	ensembl	74_37	+1	known	missense	c.905	p.R302I	0.220	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF101	HGNC	ENSG00000181896				71	0	0	34	17	33.3333
ZNF506	0	genome.wustl.edu	37	19	19905446	19905446	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	19905446	19905446	T	G	SNP	ZNF506	ENST00000443905	human	ensembl	74_37	-1	known	missense	c.1250	p.K417T	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF506	HGNC	ENSG00000081665				64	0	0	50	25	33.3333
ZNF253	0	genome.wustl.edu	37	19	20003051	20003051	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20003051	20003051	G	T	SNP	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	missense	c.995	p.R332I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				59	0	0	36	7	16.2791
ZNF90	0	genome.wustl.edu	37	19	20229335	20229335	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20229335	20229335	C	A	SNP	ZNF90	ENST00000418063	human	ensembl	74_37	+1	known	silent	c.972	p.L324	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988				28	0	0	21	9	30
ZNF486	0	genome.wustl.edu	37	19	20308761	20308761	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20308761	20308761	G	A	SNP	ZNF486	ENST00000335117	human	ensembl	74_37	+1	known	silent	c.1242	p.A414	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF486	HGNC	ENSG00000256229				42	0	0	26	19	42.2222
ZNF737	0	genome.wustl.edu	37	19	20727843	20727843	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20727843	20727843	C	A	SNP	ZNF737	ENST00000427401	human	ensembl	74_37	-1	known	missense	c.1166	p.R389I	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF737	HGNC	ENSG00000237440				62	0	0	53	29	35.3659
ZNF626	0	genome.wustl.edu	37	19	20808104	20808104	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20808104	20808104	T	C	SNP	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	silent	c.579	p.K193	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				54	0	0	40	15	27.2727
ZNF626	0	genome.wustl.edu	37	19	20828209	20828209	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20828209	20828209	T	C	SNP	ZNF626	ENST00000291750	human	ensembl	74_37	-1	known	missense	c.272	p.D91G	0.019	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				93	0	0	49	20	28.9855
ZNF66	0	genome.wustl.edu	37	19	20988720	20988720	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20988720	20988720	A	C	SNP	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	missense	c.314	p.K105T	0.894	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229				45	0	0	33	18	35.2941
ZNF66	0	genome.wustl.edu	37	19	20989507	20989507	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	20989507	20989507	A	G	SNP	ZNF66	ENST00000344519	human	ensembl	74_37	+1	known	silent	c.1101	p.K367	0.662	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF66	HGNC	ENSG00000160229				23	0	0	20	14	41.1765
ZNF85	0	genome.wustl.edu	37	19	21116931	21116931	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	21116931	21116931	G	T	SNP	ZNF85	ENST00000328178	human	ensembl	74_37	+1	known	missense	c.105	p.E35D	0.925	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750				217	0	0	147	59	28.6408
ZNF85	0	genome.wustl.edu	37	19	21132056	21132056	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	21132056	21132056	A	G	SNP	ZNF85	ENST00000328178	human	ensembl	74_37	+1	known	missense	c.736	p.I246V	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF85	HGNC	ENSG00000105750				36	0	0	38	14	26.9231
ZNF100	0	genome.wustl.edu	37	19	21910150	21910150	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	21910150	21910150	A	G	SNP	ZNF100	ENST00000358296	human	ensembl	74_37	-1	known	missense	c.964	p.C322R	0.975	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF100	HGNC	ENSG00000197020				100	0	0	63	24	27.5862
LOC641367	0	genome.wustl.edu	37	19	21934114	21934114	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	21934114	21934114	T	C	SNP	LOC641367	ENST00000596710	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.384	-	-	-	no_errors	RP11-420K14.6	Clone_based_vega_gene	ENSG00000269845				50	0	0	33	17	34
ZNF43	0	genome.wustl.edu	37	19	21992154	21992154	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	21992154	21992154	G	T	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	missense	c.685	p.P229T	0.003	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521				67	0	0	40	15	27.2727
ZNF208	0	genome.wustl.edu	37	19	22155034	22155034	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22155034	22155034	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	silent	c.2802	p.K934	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				37	0	0	37	13	26
ZNF208	0	genome.wustl.edu	37	19	22155446	22155446	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22155446	22155446	C	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2390	p.R797I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				68	0	0	40	24	37.5
ZNF208	0	genome.wustl.edu	37	19	22155637	22155637	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22155637	22155637	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2199	p.F733L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				81	0	0	76	29	27.619
ZNF208	0	genome.wustl.edu	37	19	22155698	22155698	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22155698	22155698	C	A	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2138	p.R713I	0.994	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				67	0	0	53	20	27.3973
ZNF208	0	genome.wustl.edu	37	19	22156833	22156833	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22156833	22156833	G	T	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1003	p.H335N	0.756	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				83	0	0	46	21	31.3433
ZNF257	0	genome.wustl.edu	37	19	22270960	22270960	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22270960	22270960	T	C	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	silent	c.408	p.C136	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				64	0	0	45	21	31.8182
ZNF257	0	genome.wustl.edu	37	19	22271240	22271240	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22271240	22271240	A	C	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.688	p.K230Q	0.052	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				51	0	0	42	10	19.2308
ZNF257	0	genome.wustl.edu	37	19	22271522	22271522	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22271522	22271522	G	T	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	missense	c.970	p.A324S	0.186	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134				71	0	0	70	9	11.3924
ZNF676	0	genome.wustl.edu	37	19	22363281	22363281	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22363281	22363281	C	A	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.1238	p.R413I	0.075	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				124	0	0	84	32	27.5862
ZNF676	0	genome.wustl.edu	37	19	22364161	22364161	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22364161	22364161	T	G	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.358	p.N120H	0.015	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				103	0	0	77	46	37.3984
ZNF98	0	genome.wustl.edu	37	19	22575671	22575671	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22575671	22575671	T	G	SNP	ZNF98	ENST00000357774	human	ensembl	74_37	-1	known	missense	c.366	p.L122F	0.046	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360				29	0	0	19	6	24
ZNF98	0	genome.wustl.edu	37	19	22605014	22605014	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22605014	22605014	G	T	SNP	ZNF98	ENST00000357774	human	ensembl	74_37	-1	known	missense	c.13	p.L5I	0.185	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360				191	0	0	108	56	34.1463
ZNF492	0	genome.wustl.edu	37	19	22836210	22836210	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22836210	22836210	G	T	SNP	ZNF492	ENST00000456783	human	ensembl	74_37	+1	known	missense	c.9	p.E3D	0.458	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF492	HGNC	ENSG00000229676				174	0	0	123	50	28.9017
ZNF99	0	genome.wustl.edu	37	19	22939805	22939805	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22939805	22939805	G	T	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.2526	p.F842L	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				70	0	0	47	28	37.3333
ZNF99	0	genome.wustl.edu	37	19	22942430	22942430	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	22942430	22942430	G	T	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.344	p.S115Y	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				35	0	0	24	10	29.4118
ZNF730	0	genome.wustl.edu	37	19	23328082	23328082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23328082	23328082	C	T	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	+1	known	missense	c.236	p.S79F	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF730	HGNC	ENSG00000183850				10	0	0	8	4	33.3333
ZNF730	0	genome.wustl.edu	37	19	23329224	23329224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23329224	23329224	G	T	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	+1	known	missense	c.1378	p.A460S	0.364	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF730	HGNC	ENSG00000183850				30	0	0	24	13	35.1351
ZNF91	0	genome.wustl.edu	37	19	23541757	23541757	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23541757	23541757	T	C	SNP	ZNF91	ENST00000593341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	ZNF91	HGNC	ENSG00000167232				12	0	0	6	3	33.3333
ZNF91	0	genome.wustl.edu	37	19	23543666	23543666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23543666	23543666	T	G	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.2115	p.K705N	0.139	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				77	0	0	54	23	29.8701
ZNF91	0	genome.wustl.edu	37	19	23544521	23544521	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23544521	23544521	A	T	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.1260	p.N420K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				29	0	0	29	14	32.5581
ZNF91	0	genome.wustl.edu	37	19	23545151	23545151	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23545151	23545151	A	G	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	silent	c.630	p.C210	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				80	0	0	49	26	34.6667
ZNF91	0	genome.wustl.edu	37	19	23545287	23545287	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23545287	23545287	T	G	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.494	p.K165T	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				76	0	0	64	28	30.4348
ZNF675	0	genome.wustl.edu	37	19	23836488	23836488	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23836488	23836488	C	T	SNP	ZNF675	ENST00000359788	human	ensembl	74_37	-1	known	missense	c.1247	p.R416K	0.876	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF675	HGNC	ENSG00000197372				82	0	0	41	18	30.5085
ZNF681	0	genome.wustl.edu	37	19	23927763	23927763	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23927763	23927763	A	C	SNP	ZNF681	ENST00000402377	human	ensembl	74_37	-1	known	missense	c.589	p.F197V	0.109	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172				15	0	0	13	7	35
ZNF681	0	genome.wustl.edu	37	19	23927902	23927902	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	23927902	23927902	G	T	SNP	ZNF681	ENST00000402377	human	ensembl	74_37	-1	known	silent	c.450	p.I150	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF681	HGNC	ENSG00000196172				23	0	0	18	7	28
LOC100505851	0	genome.wustl.edu	37	19	24102077	24102077	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	24102077	24102077	G	T	SNP	LOC100505851	ENST00000596326	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	CTB-92J24.3	Clone_based_vega_gene	ENSG00000269289				48	0	0	43	17	28.3333
TMPRSS9	0	genome.wustl.edu	37	19	2413960	2413960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	2413960	2413960	C	T	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.1415	p.S472L	0.016	pirsf_Pept_S1A_polyserase-1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				40	0	0	9	10	52.6316
ENSG00000253392	0	genome.wustl.edu	37	19	2915676	2915676	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	2915676	2915676	T	G	SNP	ENSG00000253392	ENST00000520090	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AC006277.2	Clone_based_vega_gene	ENSG00000253392				132	0	0	59	26	30.5882
ZNF57	0	genome.wustl.edu	37	19	2916112	2916112	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	2916112	2916112	C	A	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	missense	c.167	p.S56Y	0.142	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970				90	0	0	58	26	30.9524
ZNF57	0	genome.wustl.edu	37	19	2917762	2917762	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	2917762	2917762	A	G	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	silent	c.1143	p.E381	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970				150	0	0	74	36	32.7273
ENSG00000267243	0	genome.wustl.edu	37	19	29215123	29215123	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	29215123	29215123	C	A	SNP	ENSG00000267243	ENST00000590072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	AC005307.3	Clone_based_vega_gene	ENSG00000267243				35	0	0	22	7	24.1379
TLE6	0	genome.wustl.edu	37	19	2989114	2989114	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	2989114	2989114	G	A	SNP	TLE6	ENST00000246112	human	ensembl	74_37	+1	known	missense	c.796	p.G266R	0.923	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE6	HGNC	ENSG00000104953				85	0	0	51	31	37.8049
GNA15	0	genome.wustl.edu	37	19	3155824	3155824	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	3155824	3155824	C	T	SNP	GNA15	ENST00000262958	human	ensembl	74_37	+1	known	silent	c.618	p.I206	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA15	HGNC	ENSG00000060558				93	0	0	50	25	33.3333
ZNF507	0	genome.wustl.edu	37	19	32873490	32873490	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	32873490	32873490	G	A	SNP	ZNF507	ENST00000311921	human	ensembl	74_37	+1	known	silent	c.2478	p.A826	0.915	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF507	HGNC	ENSG00000168813				233	0	0	136	60	30.6122
RGS9BP	0	genome.wustl.edu	37	19	33167820	33167820	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	33167820	33167820	C	T	SNP	RGS9BP	ENST00000334176	human	ensembl	74_37	+1	known	silent	c.651	p.F217	1.000	NULL	NULL	-	no_errors	RGS9BP	HGNC	ENSG00000186326				21	0	0	11	5	31.25
GPATCH1	0	genome.wustl.edu	37	19	33617545	33617545	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	33617545	33617545	C	A	SNP	GPATCH1	ENST00000170564	human	ensembl	74_37	+1	known	missense	c.2671	p.P891T	0.379	NULL	pfam_DUF1604,pfam_G_patch_dom,superfamily_C-type_lectin_fold,pfscan_G_patch_dom	-	no_errors	GPATCH1	HGNC	ENSG00000076650				73	0	0	43	21	32.8125
CHST8	0	genome.wustl.edu	37	19	34180143	34180143	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	34180143	34180143	G	T	SNP	CHST8	ENST00000604556	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.977	-	-	-	no_errors	CHST8	HGNC	ENSG00000124302				135	0	0	58	21	26.5823
MFSD12	0	genome.wustl.edu	37	19	3546421	3546421	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	3546421	3546421	C	A	SNP	MFSD12	ENST00000398558	human	ensembl	74_37	-1	known	missense	c.1026	p.M342I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD12	HGNC	ENSG00000161091				19	0	0	10	8	44.4444
FXYD5	0	genome.wustl.edu	37	19	35648365	35648365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	35648365	35648365	G	A	SNP	FXYD5	ENST00000342879	human	ensembl	74_37	+1	known	missense	c.103	p.S35T	0.000	NULL	pfam_Ion-transport_regulator_FXYD	-	no_errors	FXYD5	HGNC	ENSG00000089327				55	0	0	43	3	6.52174
LSR	0	genome.wustl.edu	37	19	35757270	35757270	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	35757270	35757270	G	A	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	missense	c.931	p.A311T	1.000	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				200	0	0	36	94	72.3077
CD22	0	genome.wustl.edu	37	19	35832350	35832350	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	35832350	35832350	G	T	SNP	CD22	ENST00000085219	human	ensembl	74_37	+1	known	nonsense	c.1612	p.E538*	0.002	pfam_Immunoglobulin,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CD22	HGNC	ENSG00000012124				133	0	0	25	57	69.5122
UPK1A	0	genome.wustl.edu	37	19	36168723	36168723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36168723	36168723	G	A	SNP	UPK1A	ENST00000222275	human	ensembl	74_37	+1	known	missense	c.658	p.E220K	0.879	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	UPK1A	HGNC	ENSG00000105668				49	0	0	29	6	17.1429
ZBTB32	0	genome.wustl.edu	37	19	36207046	36207046	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36207046	36207046	A	G	SNP	ZBTB32	ENST00000262630	human	ensembl	74_37	+1	known	missense	c.1036	p.T346A	0.982	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB32	HGNC	ENSG00000011590				50	0	0	18	13	41.9355
PSENEN	0	genome.wustl.edu	37	19	36236861	36236861	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36236861	36236861	G	T	SNP	PSENEN	ENST00000222266	human	ensembl	74_37	+1	known	missense	c.30	p.E10D	1.000	pfam_Gamma_Secretase_Asp_P_PEN2	pfam_Gamma_Secretase_Asp_P_PEN2	-	no_errors	PSENEN	HGNC	ENSG00000205155				124	0	0	25	67	72.8261
LIN37	0	genome.wustl.edu	37	19	36243362	36243362	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36243362	36243362	A	C	SNP	LIN37	ENST00000301159	human	ensembl	74_37	+1	known	missense	c.138	p.K46N	0.988	NULL	NULL	-	no_errors	LIN37	HGNC	ENSG00000267796				46	0	0	6	23	79.3103
LIN37	0	genome.wustl.edu	37	19	36245009	36245009	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36245009	36245009	G	A	SNP	LIN37	ENST00000301159	human	ensembl	74_37	+1	known	missense	c.536	p.R179H	1.000	NULL	NULL	-	no_errors	LIN37	HGNC	ENSG00000267796				112	0	0	23	48	67.6056
PRODH2	0	genome.wustl.edu	37	19	36304052	36304052	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36304052	36304052	G	A	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	silent	c.132	p.C44	0.005	NULL	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799				150	0	0	34	66	66
NPHS1	0	genome.wustl.edu	37	19	36341894	36341894	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36341894	36341894	C	T	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.210	pfam_CD80_C2-set	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				72	0	0	35	16	31.3725
ZFP82	0	genome.wustl.edu	37	19	36885027	36885027	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36885027	36885027	G	T	SNP	ZFP82	ENST00000392171	human	ensembl	74_37	-1	known	missense	c.215	p.S72Y	0.033	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				59	0	0	54	6	10
ZFP82	0	genome.wustl.edu	37	19	36896524	36896524	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	36896524	36896524	C	A	SNP	ZFP82	ENST00000392161	human	ensembl	74_37	-1	known	nonsense	c.187	p.E63*	1.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP82	HGNC	ENSG00000181007				98	0	0	42	16	27.5862
ZNF461	0	genome.wustl.edu	37	19	37130848	37130848	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37130848	37130848	G	A	SNP	ZNF461	ENST00000588268	human	ensembl	74_37	-1	known	silent	c.399	p.S133	0.006	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808				233	0	0	157	73	31.7391
ZNF850	0	genome.wustl.edu	37	19	37240200	37240200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37240200	37240200	C	T	SNP	ZNF850	ENST00000591344	human	ensembl	74_37	-1	known	missense	c.1742	p.R581Q	0.966	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF850	HGNC	ENSG00000267041				12	0	0	11	4	26.6667
ZNF790	0	genome.wustl.edu	37	19	37309846	37309846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37309846	37309846	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.1400	p.R467Q	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				125	0	0	35	72	67.2897
ZNF790	0	genome.wustl.edu	37	19	37310341	37310341	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37310341	37310341	C	A	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.905	p.R302I	0.963	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				84	0	0	22	52	70.2703
ZNF790	0	genome.wustl.edu	37	19	37314254	37314254	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37314254	37314254	G	T	SNP	ZNF790	ENST00000356725	human	ensembl	74_37	-1	known	missense	c.162	p.F54L	0.142	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863				38	0	0	17	38	69.0909
ZNF345	0	genome.wustl.edu	37	19	37368393	37368393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37368393	37368393	C	T	SNP	ZNF345	ENST00000420450	human	ensembl	74_37	+1	known	missense	c.661	p.R221W	0.194	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247				119	0	0	76	27	26.2136
ZNF345	0	genome.wustl.edu	37	19	37369178	37369178	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37369178	37369178	C	T	SNP	ZNF345	ENST00000420450	human	ensembl	74_37	+1	known	silent	c.1446	p.C482	0.019	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF345	HGNC	ENSG00000251247				112	0	0	85	37	30.3279
ZNF829	0	genome.wustl.edu	37	19	37382420	37382420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37382420	37382420	G	A	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	missense	c.1516	p.R506C	0.024	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869				103	0	0	18	64	78.0488
ZNF829	0	genome.wustl.edu	37	19	37382971	37382971	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37382971	37382971	T	G	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	missense	c.965	p.E322A	0.984	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869				65	0	0	54	31	36.4706
ZNF829	0	genome.wustl.edu	37	19	37399357	37399357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37399357	37399357	G	A	SNP	ZNF829	ENST00000520965	human	ensembl	74_37	-1	known	missense	c.344	p.P115L	0.025	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF829	HGNC	ENSG00000185869				124	1	0.8	41	84	67.2
ZNF568	0	genome.wustl.edu	37	19	37440603	37440603	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37440603	37440603	A	C	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.548	p.K183T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				159	0	0	42	101	70.6294
ZNF568	0	genome.wustl.edu	37	19	37441368	37441368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37441368	37441368	G	A	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1313	p.R438Q	0.015	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				131	0	0	75	42	35.8974
ZNF568	0	genome.wustl.edu	37	19	37441536	37441536	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37441536	37441536	G	T	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1481	p.R494I	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				143	0	0	28	72	72
ZNF585B	0	genome.wustl.edu	37	19	37676966	37676966	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37676966	37676966	C	A	SNP	ZNF585B	ENST00000532828	human	ensembl	74_37	-1	known	missense	c.1473	p.E491D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF585B	HGNC	ENSG00000245680				135	0	0	39	75	65.7895
ZNF383	0	genome.wustl.edu	37	19	37734483	37734483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37734483	37734483	C	T	SNP	ZNF383	ENST00000352998	human	ensembl	74_37	+1	known	missense	c.1345	p.P449S	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF383	HGNC	ENSG00000188283				136	0	0	76	38	33.3333
MATK	0	genome.wustl.edu	37	19	3779599	3779599	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	3779599	3779599	T	C	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.862	p.N288D	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264				54	0	0	18	8	30.7692
ZNF527	0	genome.wustl.edu	37	19	37870123	37870123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37870123	37870123	G	T	SNP	ZNF527	ENST00000436120	human	ensembl	74_37	+1	known	missense	c.135	p.E45D	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164				164	0	0	41	74	64.3478
ZNF527	0	genome.wustl.edu	37	19	37880588	37880588	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37880588	37880588	G	T	SNP	ZNF527	ENST00000436120	human	ensembl	74_37	+1	known	missense	c.1637	p.R546I	0.960	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF527	HGNC	ENSG00000189164				95	0	0	37	66	64.0777
ZNF569	0	genome.wustl.edu	37	19	37903657	37903657	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37903657	37903657	C	T	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.1903	p.D635N	0.127	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				211	0	0	104	56	35
ZNF569	0	genome.wustl.edu	37	19	37904545	37904545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37904545	37904545	C	T	SNP	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	missense	c.1015	p.A339T	0.238	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				219	0	0	108	55	33.7423
ZNF570	0	genome.wustl.edu	37	19	37966812	37966812	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37966812	37966812	A	C	SNP	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	silent	c.63	p.V21	1.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				129	0	0	93	24	20.5128
ZNF570	0	genome.wustl.edu	37	19	37975024	37975024	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	37975024	37975024	C	A	SNP	ZNF570	ENST00000330173	human	ensembl	74_37	+1	known	missense	c.500	p.S167Y	0.980	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF570	HGNC	ENSG00000171827				179	0	0	144	79	35.426
ZNF571	0	genome.wustl.edu	37	19	38056098	38056098	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38056098	38056098	C	A	SNP	ZNF571	ENST00000328550	human	ensembl	74_37	-1	known	missense	c.1232	p.R411I	0.425	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF571	HGNC	ENSG00000180479				70	0	0	20	36	64.2857
ZFP30	0	genome.wustl.edu	37	19	38126696	38126696	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38126696	38126696	T	G	SNP	ZFP30	ENST00000351218	human	ensembl	74_37	-1	known	missense	c.746	p.K249T	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP30	HGNC	ENSG00000120784				115	0	0	62	26	29.5455
ZNF573	0	genome.wustl.edu	37	19	38229502	38229502	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38229502	38229502	C	A	SNP	ZNF573	ENST00000590414	human	ensembl	74_37	-1	known	missense	c.1889	p.R630I	0.132	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF573	HGNC	ENSG00000189144				254	0	0	125	65	34.2105
SIPA1L3	0	genome.wustl.edu	37	19	38610322	38610322	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38610322	38610322	T	C	SNP	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	silent	c.2668	p.L890	0.103	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				180	0	0	85	55	39.2857
FAM98C	0	genome.wustl.edu	37	19	38899392	38899392	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38899392	38899392	T	C	SNP	FAM98C	ENST00000252530	human	ensembl	74_37	+1	known	missense	c.920	p.V307A	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98C	HGNC	ENSG00000130244				127	0	0	34	70	67.3077
RYR1	0	genome.wustl.edu	37	19	38959681	38959681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	38959681	38959681	G	A	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	missense	c.3457	p.D1153N	0.998	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				107	0	0	20	56	73.6842
IFNL1	0	genome.wustl.edu	37	19	39789108	39789108	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	39789108	39789108	C	T	SNP	IFNL1	ENST00000333625	human	ensembl	74_37	+1	known	silent	c.555	p.A185	0.079	NULL	NULL	-	no_errors	IFNL1	HGNC	ENSG00000182393				256	0	0	59	107	64.4578
LRFN1	0	genome.wustl.edu	37	19	39804604	39804604	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	39804604	39804604	T	C	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	missense	c.1373	p.Y458C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				84	0	0	56	10	15.1515
PLEKHG2	0	genome.wustl.edu	37	19	39911616	39911616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	39911616	39911616	G	A	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	missense	c.1427	p.R476H	0.469	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924				120	0	0	55	18	24.6575
FCGBP	0	genome.wustl.edu	37	19	40370238	40370238	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40370238	40370238	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.12428	p.G4143D	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				88	0	0	66	13	16.4557
FCGBP	0	genome.wustl.edu	37	19	40392521	40392521	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40392521	40392521	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.7983	p.F2661L	1.000	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				169	0	0	114	18	13.6364
ZNF546	0	genome.wustl.edu	37	19	40521315	40521315	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40521315	40521315	G	T	SNP	ZNF546	ENST00000347077	human	ensembl	74_37	+1	known	missense	c.2138	p.R713I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187				104	0	0	70	25	26.3158
ZNF780B	0	genome.wustl.edu	37	19	40540394	40540394	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40540394	40540394	C	A	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.2372	p.R791I	0.029	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				87	0	0	26	68	72.3404
ZNF780B	0	genome.wustl.edu	37	19	40540950	40540950	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40540950	40540950	A	C	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.1816	p.F606V	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				190	0	0	106	56	34.5679
ZNF780B	0	genome.wustl.edu	37	19	40541040	40541040	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40541040	40541040	G	A	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	nonsense	c.1726	p.R576*	0.572	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				162	0	0	114	49	30.0613
ZNF780B	0	genome.wustl.edu	37	19	40541891	40541891	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	40541891	40541891	A	C	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.875	p.L292R	0.011	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				138	0	0	49	97	66.4384
SPTBN4	0	genome.wustl.edu	37	19	41063123	41063123	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	41063123	41063123	G	T	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.5484	p.Q1828H	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460				88	0	0	40	26	39.3939
CYP2A13	0	genome.wustl.edu	37	19	41597723	41597723	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	41597723	41597723	C	A	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.741	p.F247L	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				112	0	0	58	34	36.9565
CYP2F1	0	genome.wustl.edu	37	19	41631482	41631482	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	41631482	41631482	T	G	SNP	CYP2F1	ENST00000331105	human	ensembl	74_37	+1	known	missense	c.1237	p.F413V	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_CYP2_fam,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2F1	HGNC	ENSG00000197446				108	0	0	53	26	32.9114
CYP2S1	0	genome.wustl.edu	37	19	41700500	41700500	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	41700500	41700500	C	T	SNP	CYP2S1	ENST00000310054	human	ensembl	74_37	+1	known	missense	c.229	p.P77S	0.945	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450_E_grp-I_CYP2B-like,prints_Cyt_P450_B	-	no_errors	CYP2S1	HGNC	ENSG00000167600				107	0	0	18	56	75.6757
ARHGEF1	0	genome.wustl.edu	37	19	42396120	42396120	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	42396120	42396120	C	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	silent	c.295	p.L99	0.999	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				98	0	0	47	28	37.3333
LIPE	0	genome.wustl.edu	37	19	42912401	42912401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	42912401	42912401	C	T	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	missense	c.1493	p.R498H	1.000	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				266	0	0	115	57	33.1395
CEACAM8	0	genome.wustl.edu	37	19	43087468	43087468	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	43087468	43087468	G	T	SNP	CEACAM8	ENST00000244336	human	ensembl	74_37	-1	known	missense	c.980	p.S327Y	0.003	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM8	HGNC	ENSG00000124469				80	0	0	52	20	27.7778
PSG10P	0	genome.wustl.edu	37	19	43349198	43349198	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	43349198	43349198	G	A	SNP	PSG10P	ENST00000597171	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSG10P	HGNC	ENSG00000248257				291	0	0	169	65	27.7778
PSG1	0	genome.wustl.edu	37	19	43375919	43375919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	43375919	43375919	G	A	SNP	PSG1	ENST00000312439	human	ensembl	74_37	-1	known	missense	c.709	p.P237S	0.001	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG1	HGNC	ENSG00000231924				524	0	0	145	324	69.0832
PSG5	0	genome.wustl.edu	37	19	43689144	43689144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	43689144	43689144	C	T	SNP	PSG5	ENST00000342951	human	ensembl	74_37	-1	known	missense	c.220	p.D74N	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG5	HGNC	ENSG00000204941				454	0	0	264	138	34.3284
PSG4	0	genome.wustl.edu	37	19	43699426	43699426	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	43699426	43699426	C	T	SNP	PSG4	ENST00000405312	human	ensembl	74_37	-1	known	splice_site	c.710-1	e4-1	0.078	-	-	-	no_errors	PSG4	HGNC	ENSG00000243137				284	0	0	73	157	68.2609
ZNF221	0	genome.wustl.edu	37	19	44470846	44470846	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44470846	44470846	G	T	SNP	ZNF221	ENST00000251269	human	ensembl	74_37	+1	known	nonsense	c.1192	p.E398*	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF221	HGNC	ENSG00000159905				155	0	0	79	42	34.7107
ZNF223	0	genome.wustl.edu	37	19	44570416	44570416	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44570416	44570416	G	T	SNP	ZNF223	ENST00000591793	human	ensembl	74_37	+1	known	missense	c.765	p.Q255H	0.986	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF223	Uniprot_gn	ENSG00000267022				192	0	0	132	57	30.1587
ZNF224	0	genome.wustl.edu	37	19	44611252	44611252	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44611252	44611252	G	T	SNP	ZNF224	ENST00000336976	human	ensembl	74_37	+1	known	missense	c.939	p.E313D	0.459	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680				234	1	0.425532	81	141	63.5135
ZNF225	0	genome.wustl.edu	37	19	44636406	44636406	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44636406	44636406	A	C	SNP	ZNF225	ENST00000262894	human	ensembl	74_37	+1	known	missense	c.1639	p.K547Q	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF225	HGNC	ENSG00000256294				135	0	0	98	46	31.9444
ZNF226	0	genome.wustl.edu	37	19	44680167	44680167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44680167	44680167	C	T	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	missense	c.752	p.S251L	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380				106	0	0	87	5	5.43478
ZNF226	0	genome.wustl.edu	37	19	44681081	44681081	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44681081	44681081	G	T	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	nonsense	c.1666	p.E556*	0.996	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380				213	0	0	125	65	34.2105
ZNF226	0	genome.wustl.edu	37	19	44681178	44681178	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44681178	44681178	A	C	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	missense	c.1763	p.K588T	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380				151	0	0	51	106	67.5159
ZNF226	0	genome.wustl.edu	37	19	44681808	44681808	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	44681808	44681808	A	T	SNP	ZNF226	ENST00000337433	human	ensembl	74_37	+1	known	missense	c.2393	p.E798V	0.382	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF226	HGNC	ENSG00000167380				41	0	0	33	3	8.33333
CLASRP	0	genome.wustl.edu	37	19	45563839	45563839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	45563839	45563839	G	A	SNP	CLASRP	ENST00000221455	human	ensembl	74_37	+1	known	missense	c.817	p.E273K	1.000	NULL	pfam_SWAP_N_domain	-	no_errors	CLASRP	HGNC	ENSG00000104859				34	0	0	29	8	21.6216
SEMA6B	0	genome.wustl.edu	37	19	4557207	4557207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	4557207	4557207	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	missense	c.274	p.P92S	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				58	0	0	17	15	46.875
EXOC3L2	0	genome.wustl.edu	37	19	45731000	45731000	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	45731000	45731000	C	A	SNP	EXOC3L2	ENST00000252482	human	ensembl	74_37	-1	known	missense	c.324	p.E108D	1.000	pfam_Sec6	pfam_Sec6,superfamily_Tet_transcr_reg_TetR-rel_C	-	no_errors	EXOC3L2	HGNC	ENSG00000130201				38	0	0	10	4	28.5714
CKM	0	genome.wustl.edu	37	19	45810167	45810167	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	45810167	45810167	G	A	SNP	CKM	ENST00000221476	human	ensembl	74_37	-1	known	silent	c.987	p.A329	0.709	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKM	HGNC	ENSG00000104879				220	0	0	56	100	64.1026
ERCC2	0	genome.wustl.edu	37	19	45868310	45868310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	45868310	45868310	C	T	SNP	ERCC2	ENST00000391945	human	ensembl	74_37	-1	known	missense	c.467	p.R156Q	1.000	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	pfam_DUF1227,pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,prints_XPGD_DNA_repair,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	ERCC2	HGNC	ENSG00000104884				60	0	0	12	22	64.7059
RTN2	0	genome.wustl.edu	37	19	45998139	45998139	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	45998139	45998139	G	T	SNP	RTN2	ENST00000245923	human	ensembl	74_37	-1	known	silent	c.204	p.A68	1.000	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744				70	0	0	20	35	63.6364
DMPK	0	genome.wustl.edu	37	19	46282726	46282726	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	46282726	46282726	T	G	SNP	DMPK	ENST00000343373	human	ensembl	74_37	-1	known	missense	c.337	p.N113H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	DMPK	HGNC	ENSG00000104936				230	0	0	98	53	35.0993
RSPH6A	0	genome.wustl.edu	37	19	46308102	46308102	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	46308102	46308102	C	A	SNP	RSPH6A	ENST00000221538	human	ensembl	74_37	-1	known	missense	c.1061	p.S354I	0.769	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941				67	0	0	29	15	34.0909
MYPOP	0	genome.wustl.edu	37	19	46393881	46393881	+	Nonstop_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	46393881	46393881	T	C	SNP	MYPOP	ENST00000322217	human	ensembl	74_37	-1	known	nonstop	c.1200	p.*400W	0.995	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYPOP	HGNC	ENSG00000176182				112	0	0	14	51	78.4615
NANOS2	0	genome.wustl.edu	37	19	46417834	46417834	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	46417834	46417834	G	T	SNP	NANOS2	ENST00000341294	human	ensembl	74_37	-1	known	missense	c.118	p.P40T	0.002	NULL	pfam_Znf_nanos-typ	-	no_errors	NANOS2	HGNC	ENSG00000188425				123	0	0	52	28	35
PNMAL1	0	genome.wustl.edu	37	19	46973370	46973370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	46973370	46973370	G	A	SNP	PNMAL1	ENST00000313683	human	ensembl	74_37	-1	known	missense	c.923	p.A308V	0.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013				359	0	0	79	151	65.6522
KPTN	0	genome.wustl.edu	37	19	47986471	47986471	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	47986471	47986471	C	A	SNP	KPTN	ENST00000338134	human	ensembl	74_37	-1	known	missense	c.396	p.Q132H	1.000	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162				303	0	0	150	72	32.4324
SULT2A1	0	genome.wustl.edu	37	19	48386971	48386971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	48386971	48386971	G	A	SNP	SULT2A1	ENST00000222002	human	ensembl	74_37	-1	known	missense	c.208	p.P70S	0.744	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT2A1	HGNC	ENSG00000105398				83	0	0	19	50	72.4638
CABP5	0	genome.wustl.edu	37	19	48543980	48543980	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	48543980	48543980	G	A	SNP	CABP5	ENST00000293255	human	ensembl	74_37	-1	known	silent	c.120	p.F40	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP5	HGNC	ENSG00000105507				138	0	0	29	56	65.8824
PLIN3	0	genome.wustl.edu	37	19	4859985	4859985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	4859985	4859985	C	T	SNP	PLIN3	ENST00000221957	human	ensembl	74_37	-1	known	missense	c.118	p.D40N	0.909	pfam_Perilipin,pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN3	HGNC	ENSG00000105355				87	0	0	44	5	10.2041
ZNF114	0	genome.wustl.edu	37	19	48789668	48789668	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	48789668	48789668	C	A	SNP	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	missense	c.787	p.H263N	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				150	0	0	48	92	65.7143
ARRDC5	0	genome.wustl.edu	37	19	4891415	4891415	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	4891415	4891415	G	A	SNP	ARRDC5	ENST00000381781	human	ensembl	74_37	-1	known	silent	c.672	p.F224	0.001	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC5	HGNC	ENSG00000205784				70	0	0	36	12	25
KCNJ14	0	genome.wustl.edu	37	19	48967513	48967513	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	48967513	48967513	G	A	SNP	KCNJ14	ENST00000342291	human	ensembl	74_37	+1	known	missense	c.790	p.D264N	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ14	HGNC	ENSG00000182324				59	0	0	20	9	31.0345
IZUMO1	0	genome.wustl.edu	37	19	49245472	49245472	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	49245472	49245472	A	C	SNP	IZUMO1	ENST00000332955	human	ensembl	74_37	-1	known	missense	c.594	p.F198L	0.976	NULL	NULL	-	no_errors	IZUMO1	HGNC	ENSG00000182264				141	0	0	33	78	70.2703
PLEKHA4	0	genome.wustl.edu	37	19	49364675	49364675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	49364675	49364675	G	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	74_37	-1	known	missense	c.349	p.R117W	0.996	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559				94	0	0	46	17	26.9841
PLEKHA4	0	genome.wustl.edu	37	19	49368824	49368824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	49368824	49368824	C	A	SNP	PLEKHA4	ENST00000263265	human	ensembl	74_37	-1	known	missense	c.128	p.R43I	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA4	HGNC	ENSG00000105559				71	0	0	33	15	31.25
TSKS	0	genome.wustl.edu	37	19	50251693	50251693	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50251693	50251693	C	A	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.433	p.D145Y	1.000	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467				105	0	0	50	21	29.5775
IL4I1	0	genome.wustl.edu	37	19	50399224	50399224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50399224	50399224	C	T	SNP	IL4I1	ENST00000341114	human	ensembl	74_37	-1	known	missense	c.166	p.E56K	0.000	NULL	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_AlaDH/PNT_NAD(H)-bd,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	IL4I1	HGNC	ENSG00000104951				183	0	0	85	35	29.1667
ZNF473	0	genome.wustl.edu	37	19	50549532	50549532	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50549532	50549532	G	A	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	missense	c.1832	p.R611K	0.307	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				84	0	0	54	28	34.1463
ZNF473	0	genome.wustl.edu	37	19	50550117	50550117	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50550117	50550117	G	T	SNP	ZNF473	ENST00000270617	human	ensembl	74_37	+1	known	missense	c.2417	p.R806I	0.062	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF473	HGNC	ENSG00000142528				94	0	0	48	26	35.1351
MYH14	0	genome.wustl.edu	37	19	50720889	50720889	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50720889	50720889	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	silent	c.423	p.F141	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357				196	0	0	113	46	28.9308
SPIB	0	genome.wustl.edu	37	19	50926154	50926154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50926154	50926154	G	A	SNP	SPIB	ENST00000595883	human	ensembl	74_37	+1	known	missense	c.199	p.A67T	0.001	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIB	HGNC	ENSG00000269404				213	0	0	35	112	76.1905
MYBPC2	0	genome.wustl.edu	37	19	50951486	50951486	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	50951486	50951486	A	G	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	silent	c.1311	p.K437	0.998	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				60	0	0	25	11	30.5556
LRRC4B	0	genome.wustl.edu	37	19	51022417	51022417	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	51022417	51022417	G	A	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.553	p.R185W	1.000	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				118	0	0	37	22	37.2881
LRRC4B	0	genome.wustl.edu	37	19	51051822	51051822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	51051822	51051822	T	C	SNP	LRRC4B	ENST00000389201	human	ensembl	74_37	-1	known	missense	c.274	p.N92D	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4B	HGNC	ENSG00000131409				26	0	0	0	3	100
KLK3	0	genome.wustl.edu	37	19	51361284	51361284	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	51361284	51361284	G	A	SNP	KLK3	ENST00000326003	human	ensembl	74_37	+1	known	splice_site	c.207-1	e3-1	0.001	-	-	-	no_errors	KLK3	HGNC	ENSG00000142515				64	0	0	30	23	43.3962
SIGLEC10	0	genome.wustl.edu	37	19	51919253	51919253	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	51919253	51919253	A	C	SNP	SIGLEC10	ENST00000339313	human	ensembl	74_37	-1	known	missense	c.923	p.L308R	0.983	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC10	HGNC	ENSG00000142512				122	0	0	22	49	69.0141
SIGLEC12	0	genome.wustl.edu	37	19	52000207	52000207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52000207	52000207	G	A	SNP	SIGLEC12	ENST00000291707	human	ensembl	74_37	-1	known	missense	c.1526	p.S509L	0.001	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521				153	0	0	30	57	65.5172
SIGLEC5	0	genome.wustl.edu	37	19	52130481	52130481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52130481	52130481	C	T	SNP	SIGLEC5	ENST00000222107	human	ensembl	74_37	-1	known	missense	c.1303	p.G435R	0.001	NULL	pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC5	HGNC	ENSG00000105501				66	0	0	34	12	26.087
FPR1	0	genome.wustl.edu	37	19	52249296	52249296	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52249296	52249296	C	T	SNP	FPR1	ENST00000304748	human	ensembl	74_37	-1	known	missense	c.952	p.A318T	0.155	prints_Formyl_pep_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051				162	0	0	84	44	34.375
FPR1	0	genome.wustl.edu	37	19	52250104	52250104	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52250104	52250104	G	A	SNP	FPR1	ENST00000304748	human	ensembl	74_37	-1	known	silent	c.144	p.I48	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Formyl_pep_rcpt,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt	-	no_errors	FPR1	HGNC	ENSG00000171051				104	0	0	21	58	73.4177
ZNF577	0	genome.wustl.edu	37	19	52376895	52376895	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52376895	52376895	T	C	SNP	ZNF577	ENST00000301399	human	ensembl	74_37	-1	known	silent	c.348	p.R116	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF577	HGNC	ENSG00000161551				96	0	0	28	43	60.5634
ZNF613	0	genome.wustl.edu	37	19	52447723	52447723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52447723	52447723	G	A	SNP	ZNF613	ENST00000293471	human	ensembl	74_37	+1	known	missense	c.587	p.R196Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024				385	0	0	97	207	68.0921
ZNF432	0	genome.wustl.edu	37	19	52537131	52537131	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52537131	52537131	C	A	SNP	ZNF432	ENST00000221315	human	ensembl	74_37	-1	known	nonsense	c.1801	p.E601*	0.016	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF432	HGNC	ENSG00000256087				192	0	0	105	44	29.5302
ZNF841	0	genome.wustl.edu	37	19	52568865	52568865	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52568865	52568865	C	A	SNP	ZNF841	ENST00000389534	human	ensembl	74_37	-1	known	missense	c.2270	p.R757I	0.403	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608				17	0	0	8	19	70.3704
ZNF616	0	genome.wustl.edu	37	19	52618189	52618189	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52618189	52618189	T	G	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.2228	p.K743T	0.361	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				151	0	0	43	97	69.2857
ZNF616	0	genome.wustl.edu	37	19	52619990	52619990	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52619990	52619990	T	G	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.427	p.N143H	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611				172	0	0	60	115	65.7143
PPP2R1A	0	genome.wustl.edu	37	19	52716217	52716217	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52716217	52716217	C	T	SNP	PPP2R1A	ENST00000322088	human	ensembl	74_37	+1	known	missense	c.661	p.R221W	1.000	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1A	HGNC	ENSG00000105568				120	1	0.826446	21	58	73.4177
ZNF766	0	genome.wustl.edu	37	19	52785394	52785394	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52785394	52785394	G	T	SNP	ZNF766	ENST00000359102	human	ensembl	74_37	+1	known	nonsense	c.94	p.E32*	0.941	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF766	HGNC	ENSG00000196214				324	0	0	90	164	64.5669
ZNF480	0	genome.wustl.edu	37	19	52825331	52825331	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52825331	52825331	A	G	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	silent	c.828	p.R276	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				68	0	0	15	35	70
ZNF610	0	genome.wustl.edu	37	19	52856965	52856965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	52856965	52856965	G	A	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.94	p.E32K	0.891	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554				128	0	0	26	82	75.9259
ZNF578	0	genome.wustl.edu	37	19	53013860	53013860	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53013860	53013860	T	C	SNP	ZNF578	ENST00000421239	human	ensembl	74_37	+1	known	missense	c.226	p.S76P	0.000	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405				262	0	0	74	111	60
ZNF578	0	genome.wustl.edu	37	19	53014974	53014974	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53014974	53014974	G	C	SNP	ZNF578	ENST00000421239	human	ensembl	74_37	+1	known	missense	c.1340	p.R447T	0.015	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405				114	0	0	26	65	71.4286
ZNF701	0	genome.wustl.edu	37	19	53086082	53086082	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53086082	53086082	A	C	SNP	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	missense	c.968	p.Y323S	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				106	0	0	52	28	35
ZNF701	0	genome.wustl.edu	37	19	53086702	53086702	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53086702	53086702	A	C	SNP	ZNF701	ENST00000301093	human	ensembl	74_37	+1	known	missense	c.1588	p.K530Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF701	HGNC	ENSG00000167562				52	0	0	13	29	69.0476
ZNF816	0	genome.wustl.edu	37	19	53453915	53453915	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53453915	53453915	A	G	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	silent	c.1113	p.C371	0.196	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				257	0	0	155	74	32.3144
ZNF816	0	genome.wustl.edu	37	19	53454606	53454606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53454606	53454606	C	T	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	missense	c.422	p.R141Q	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				406	0	0	208	135	39.3586
ZNF347	0	genome.wustl.edu	37	19	53644231	53644231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53644231	53644231	C	T	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	missense	c.1853	p.R618Q	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				182	0	0	52	110	67.9012
ZNF347	0	genome.wustl.edu	37	19	53645327	53645327	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53645327	53645327	G	A	SNP	ZNF347	ENST00000452676	human	ensembl	74_37	-1	known	nonsense	c.757	p.Q253*	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF347	HGNC	ENSG00000197937				182	0	0	48	104	68.4211
ZNF665	0	genome.wustl.edu	37	19	53668755	53668755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53668755	53668755	G	A	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.988	p.R330C	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				170	0	0	30	93	75.6098
ZNF665	0	genome.wustl.edu	37	19	53668977	53668977	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53668977	53668977	G	T	SNP	ZNF665	ENST00000396424	human	ensembl	74_37	-1	known	missense	c.766	p.H256N	0.956	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF665	HGNC	ENSG00000197497				175	0	0	99	50	33.557
VN1R2	0	genome.wustl.edu	37	19	53762651	53762651	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53762651	53762651	C	T	SNP	VN1R2	ENST00000341702	human	ensembl	74_37	+1	known	silent	c.1023	p.F341	0.000	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_Vmron_rcpt_1,pfam_GPCR_Rhodpsn,pfam_TAS2_rcpt,pfscan_GPCR_Rhodpsn_7TM,prints_Vmron_rcpt_1	-	no_errors	VN1R2	HGNC	ENSG00000196131				271	0	0	126	68	35.0515
BIRC8	0	genome.wustl.edu	37	19	53793036	53793036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53793036	53793036	C	T	SNP	BIRC8	ENST00000426466	human	ensembl	74_37	-1	known	missense	c.592	p.A198T	0.003	smart_Znf_RING,pfscan_Znf_RING	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098				133	0	0	38	91	70.5426
BIRC8	0	genome.wustl.edu	37	19	53793162	53793162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53793162	53793162	C	T	SNP	BIRC8	ENST00000426466	human	ensembl	74_37	-1	known	missense	c.466	p.A156T	0.017	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC8	HGNC	ENSG00000163098				139	0	0	34	99	74.4361
ZNF761	0	genome.wustl.edu	37	19	53958094	53958094	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53958094	53958094	A	G	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.409	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336				148	1	0.671141	59	85	59.0278
ZNF813	0	genome.wustl.edu	37	19	53994839	53994839	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	53994839	53994839	T	G	SNP	ZNF813	ENST00000396403	human	ensembl	74_37	+1	known	missense	c.1353	p.N451K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF813	HGNC	ENSG00000198346				86	0	0	24	51	68
MIR520A	0	genome.wustl.edu	37	19	54194135	54194135	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54194135	54194135	C	A	SNP	MIR520A	ENST00000384862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	MIR520A	HGNC	ENSG00000207594				251	0	0	146	69	32.093
CACNG7	0	genome.wustl.edu	37	19	54444771	54444771	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54444771	54444771	G	A	SNP	CACNG7	ENST00000222212	human	ensembl	74_37	+1	known	missense	c.472	p.D158N	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_g7su,prints_VDCC_gsu	-	no_errors	CACNG7	HGNC	ENSG00000105605				185	0	0	72	41	36.2832
LILRA6	0	genome.wustl.edu	37	19	54744915	54744915	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54744915	54744915	G	A	SNP	LILRA6	ENST00000419410	human	ensembl	74_37	-1	known	silent	c.747	p.V249	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRA6	HGNC	ENSG00000244482				202	1	0.492611	94	53	36.0544
LILRB5	0	genome.wustl.edu	37	19	54759153	54759153	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54759153	54759153	G	A	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	silent	c.921	p.I307	0.832	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				65	0	0	61	5	7.57576
LILRB5	0	genome.wustl.edu	37	19	54760832	54760832	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54760832	54760832	A	G	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.62	p.V21A	0.023	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				107	0	0	49	15	23.4375
LENG8	0	genome.wustl.edu	37	19	54962550	54962550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	54962550	54962550	G	A	SNP	LENG8	ENST00000326764	human	ensembl	74_37	+1	known	missense	c.29	p.S10N	0.001	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	LENG8	HGNC	ENSG00000167615				93	0	0	68	22	24.4444
LILRB4	0	genome.wustl.edu	37	19	55176585	55176585	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55176585	55176585	C	T	SNP	LILRB4	ENST00000270452	human	ensembl	74_37	+1	known	silent	c.711	p.G237	0.161	NULL	pfam_Immunoglobulin,pfscan_Ig-like_dom	-	no_errors	LILRB4	HGNC	ENSG00000186818				25	0	0	6	9	60
ENSG00000215765	0	genome.wustl.edu	37	19	55301703	55301703	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55301703	55301703	C	T	SNP	ENSG00000215765	ENST00000400864	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.205	-	-	-	no_errors	CTB-61M7.1	Clone_based_vega_gene	ENSG00000215765				43	0	0	16	6	27.2727
KIR3DL1	0	genome.wustl.edu	37	19	55331352	55331352	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55331352	55331352	C	A	SNP	KIR3DL1	ENST00000402254	human	ensembl	74_37	+1	known	missense	c.540	p.F180L	0.002	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				415	1	0.240385	239	126	34.5205
KIR3DL1	0	genome.wustl.edu	37	19	55341405	55341405	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55341405	55341405	G	A	SNP	KIR3DL1	ENST00000391728	human	ensembl	74_37	+1	known	silent	c.1128	p.E376	0.084	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL1	HGNC	ENSG00000167633				239	0	0	70	131	65.1741
KIR3DL2	0	genome.wustl.edu	37	19	55363593	55363593	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55363593	55363593	T	G	SNP	KIR3DL2	ENST00000326321	human	ensembl	74_37	+1	known	missense	c.211	p.F71V	0.000	pfam_Immunoglobulin,smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR3DL2	HGNC	ENSG00000240403				88	0	0	42	22	34.375
ENSG00000267149	0	genome.wustl.edu	37	19	55556347	55556347	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55556347	55556347	C	T	SNP	ENSG00000267149	ENST00000585492	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-550B14.6	Clone_based_vega_gene	ENSG00000267149				13	0	0	8	10	55.5556
PPP1R12C	0	genome.wustl.edu	37	19	55607700	55607700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55607700	55607700	G	A	SNP	PPP1R12C	ENST00000263433	human	ensembl	74_37	-1	known	missense	c.955	p.R319W	1.000	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12C	HGNC	ENSG00000125503				199	1	0.5	94	61	39.3548
TNNT1	0	genome.wustl.edu	37	19	55652593	55652593	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55652593	55652593	C	A	SNP	TNNT1	ENST00000588981	human	ensembl	74_37	-1	known	missense	c.270	p.K90N	1.000	pfam_Troponin	pfam_Troponin	-	no_errors	TNNT1	HGNC	ENSG00000105048				134	0	0	54	30	35.7143
SYT5	0	genome.wustl.edu	37	19	55686654	55686654	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55686654	55686654	G	A	SNP	SYT5	ENST00000354308	human	ensembl	74_37	-1	known	silent	c.594	p.F198	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT5	HGNC	ENSG00000129990				39	0	0	6	15	71.4286
BRSK1	0	genome.wustl.edu	37	19	55805594	55805594	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55805594	55805594	T	G	SNP	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	nonsense	c.636	p.Y212*	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				166	0	0	58	29	33.3333
TMEM150B	0	genome.wustl.edu	37	19	55828275	55828275	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	55828275	55828275	G	A	SNP	TMEM150B	ENST00000326652	human	ensembl	74_37	-1	known	silent	c.384	p.N128	0.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150B	HGNC	ENSG00000180061				39	0	0	16	6	27.2727
NLRP9	0	genome.wustl.edu	37	19	56244828	56244828	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56244828	56244828	G	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.369	p.F123L	0.183	superfamily_P-loop_NTPase	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				126	0	0	26	74	74
NLRP11	0	genome.wustl.edu	37	19	56321612	56321612	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56321612	56321612	G	A	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	missense	c.364	p.R122C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP11	HGNC	ENSG00000179873				76	0	0	38	17	30.9091
NLRP13	0	genome.wustl.edu	37	19	56407479	56407479	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56407479	56407479	C	T	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	silent	c.2964	p.A988	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				155	1	0.641026	39	69	63.8889
NLRP13	0	genome.wustl.edu	37	19	56423490	56423490	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56423490	56423490	C	A	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	nonsense	c.1693	p.E565*	0.535	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				200	0	0	46	91	66.4234
NLRP8	0	genome.wustl.edu	37	19	56459552	56459552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56459552	56459552	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	missense	c.284	p.R95Q	0.000	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				78	0	0	39	26	40
NLRP8	0	genome.wustl.edu	37	19	56467001	56467001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56467001	56467001	G	A	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	missense	c.1577	p.R526K	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709				257	0	0	66	127	65.8031
ZSCAN5B	0	genome.wustl.edu	37	19	56703252	56703252	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56703252	56703252	G	T	SNP	ZSCAN5B	ENST00000358992	human	ensembl	74_37	-1	known	silent	c.555	p.I185	0.001	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5B	HGNC	ENSG00000197213				84	0	0	43	24	35.8209
ZNF583	0	genome.wustl.edu	37	19	56935142	56935142	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56935142	56935142	G	T	SNP	ZNF583	ENST00000291598	human	ensembl	74_37	+1	known	missense	c.1115	p.R372I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF583	HGNC	ENSG00000198440				104	0	0	74	37	33.3333
ZNF667	0	genome.wustl.edu	37	19	56953546	56953546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56953546	56953546	T	G	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	missense	c.1202	p.K401T	0.126	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				114	0	0	69	38	35.514
ZNF667	0	genome.wustl.edu	37	19	56973782	56973782	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	56973782	56973782	G	T	SNP	ZNF667	ENST00000342634	human	ensembl	74_37	-1	known	silent	c.237	p.L79	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF667	HGNC	ENSG00000198046				124	0	0	89	9	9.18367
ZFP28	0	genome.wustl.edu	37	19	57059234	57059234	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57059234	57059234	G	A	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	nonsense	c.486	p.W162*	0.431	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				119	0	0	59	29	32.9545
ZFP28	0	genome.wustl.edu	37	19	57066652	57066652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57066652	57066652	G	A	SNP	ZFP28	ENST00000301318	human	ensembl	74_37	+1	known	missense	c.2498	p.R833Q	0.150	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP28	HGNC	ENSG00000196867				414	1	0.240964	230	129	35.9331
ZNF470	0	genome.wustl.edu	37	19	57088137	57088137	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57088137	57088137	G	T	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	nonsense	c.340	p.E114*	0.095	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				95	0	0	49	35	41.6667
ZNF470	0	genome.wustl.edu	37	19	57089047	57089047	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57089047	57089047	G	T	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	missense	c.1250	p.R417I	0.997	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				135	0	0	86	15	14.8515
ZNF470	0	genome.wustl.edu	37	19	57089613	57089613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57089613	57089613	G	A	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	missense	c.1816	p.A606T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016				89	0	0	44	25	36.2319
ZNF835	0	genome.wustl.edu	37	19	57175095	57175095	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57175095	57175095	C	T	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.1472	p.R491Q	0.154	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				362	1	0.275482	166	76	31.405
PEG3	0	genome.wustl.edu	37	19	57329140	57329140	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57329140	57329140	C	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.836	p.R279I	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300				57	0	0	9	29	76.3158
USP29	0	genome.wustl.edu	37	19	57641212	57641212	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57641212	57641212	A	C	SNP	USP29	ENST00000254181	human	ensembl	74_37	+1	known	missense	c.1169	p.K390T	0.767	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP29	HGNC	ENSG00000131864				136	0	0	73	43	37.069
ZNF805	0	genome.wustl.edu	37	19	57765821	57765821	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57765821	57765821	G	A	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	missense	c.1634	p.G545E	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				99	0	0	65	27	29.3478
ZNF805	0	genome.wustl.edu	37	19	57765835	57765835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57765835	57765835	C	T	SNP	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	missense	c.1648	p.R550C	0.733	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF805	HGNC	ENSG00000204524				92	0	0	32	55	63.2184
ZNF460	0	genome.wustl.edu	37	19	57802298	57802298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57802298	57802298	C	T	SNP	ZNF460	ENST00000360338	human	ensembl	74_37	+1	known	missense	c.389	p.A130V	0.147	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF460	HGNC	ENSG00000197714				177	0	0	101	55	35.2564
ZNF17	0	genome.wustl.edu	37	19	57932413	57932413	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57932413	57932413	G	T	SNP	ZNF17	ENST00000601808	human	ensembl	74_37	+1	known	missense	c.1553	p.R518I	0.989	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF17	HGNC	ENSG00000186272				160	0	0	49	96	66.2069
ZNF749	0	genome.wustl.edu	37	19	57956643	57956643	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	57956643	57956643	G	A	SNP	ZNF749	ENST00000334181	human	ensembl	74_37	+1	known	silent	c.2127	p.S709	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF749	HGNC	ENSG00000186230				83	0	0	59	34	36.5591
ZNF419	0	genome.wustl.edu	37	19	58004329	58004329	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58004329	58004329	A	C	SNP	ZNF419	ENST00000424930	human	ensembl	74_37	+1	known	missense	c.407	p.K136T	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136				81	0	0	20	35	63.6364
ZNF773	0	genome.wustl.edu	37	19	58018216	58018216	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58018216	58018216	C	A	SNP	ZNF773	ENST00000282292	human	ensembl	74_37	+1	known	missense	c.753	p.D251E	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF773	HGNC	ENSG00000152439				130	0	0	61	52	46.0177
ZIK1	0	genome.wustl.edu	37	19	58102074	58102074	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58102074	58102074	G	A	SNP	ZIK1	ENST00000597850	human	ensembl	74_37	+1	known	missense	c.895	p.E299K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIK1	HGNC	ENSG00000171649				82	0	0	57	32	35.9551
ZNF530	0	genome.wustl.edu	37	19	58115765	58115765	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58115765	58115765	G	A	SNP	ZNF530	ENST00000332854	human	ensembl	74_37	+1	known	missense	c.151	p.A51T	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF530	HGNC	ENSG00000183647				380	0	0	150	72	32.4324
ZSCAN4	0	genome.wustl.edu	37	19	58187817	58187817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58187817	58187817	G	A	SNP	ZSCAN4	ENST00000318203	human	ensembl	74_37	+1	known	missense	c.304	p.A102T	0.001	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN4	HGNC	ENSG00000180532				120	0	0	32	73	69.5238
ZNF671	0	genome.wustl.edu	37	19	58232204	58232204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58232204	58232204	C	T	SNP	ZNF671	ENST00000317398	human	ensembl	74_37	-1	known	missense	c.1250	p.R417Q	0.489	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814				130	0	0	31	61	66.3043
ZNF671	0	genome.wustl.edu	37	19	58234635	58234635	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58234635	58234635	C	A	SNP	ZNF671	ENST00000317398	human	ensembl	74_37	-1	known	missense	c.212	p.R71I	0.394	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF671	HGNC	ENSG00000083814				213	0	0	56	116	67.4419
ZNF552	0	genome.wustl.edu	37	19	58326023	58326023	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58326023	58326023	T	G	SNP	ZNF552	ENST00000596248	human	ensembl	74_37	-1	known	missense	c.89	p.K30T	0.009	NULL	NULL	-	no_errors	ZNF552	HGNC	ENSG00000178935				45	0	0	12	10	45.4545
ZNF814	0	genome.wustl.edu	37	19	58386057	58386057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58386057	58386057	C	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.701	p.R234K	0.003	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				13	0	0	9	6	40
ZNF418	0	genome.wustl.edu	37	19	58438323	58438323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58438323	58438323	C	T	SNP	ZNF418	ENST00000396147	human	ensembl	74_37	-1	known	missense	c.1226	p.R409Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF418	HGNC	ENSG00000196724				315	0	0	149	78	34.3612
ZNF606	0	genome.wustl.edu	37	19	58489988	58489988	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58489988	58489988	C	A	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.2060	p.R687I	0.844	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				124	0	0	50	35	41.1765
ZNF606	0	genome.wustl.edu	37	19	58490033	58490033	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58490033	58490033	C	A	SNP	ZNF606	ENST00000341164	human	ensembl	74_37	-1	known	missense	c.2015	p.R672I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF606	HGNC	ENSG00000166704				146	0	0	20	71	78.022
ZSCAN18	0	genome.wustl.edu	37	19	58601494	58601494	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58601494	58601494	G	T	SNP	ZSCAN18	ENST00000600404	human	ensembl	74_37	-1	known	missense	c.309	p.F103L	0.203	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN18	HGNC	ENSG00000121413				75	0	0	23	46	66.6667
A1BG-AS1	0	genome.wustl.edu	37	19	58864821	58864821	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58864821	58864821	C	T	SNP	A1BG-AS1	ENST00000593374	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	A1BG-AS1	HGNC	ENSG00000268895				20	0	0	2	11	84.6154
ZNF132	0	genome.wustl.edu	37	19	58944990	58944990	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58944990	58944990	G	A	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	silent	c.1821	p.F607	0.413	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				164	0	0	38	85	69.1057
ZNF132	0	genome.wustl.edu	37	19	58945795	58945795	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	58945795	58945795	C	A	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	missense	c.1016	p.R339I	0.984	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				93	0	0	21	57	73.0769
RANBP3	0	genome.wustl.edu	37	19	5917945	5917945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	5917945	5917945	C	T	SNP	RANBP3	ENST00000340578	human	ensembl	74_37	-1	known	missense	c.1520	p.R507H	1.000	smart_Ran_bind_dom	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	-	no_errors	RANBP3	HGNC	ENSG00000031823				169	0	0	57	29	33.7209
RFX2	0	genome.wustl.edu	37	19	5997113	5997113	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	5997113	5997113	G	A	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	silent	c.1971	p.V657	0.996	NULL	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				93	0	0	53	34	39.0805
RFX2	0	genome.wustl.edu	37	19	6016224	6016224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6016224	6016224	G	T	SNP	RFX2	ENST00000303657	human	ensembl	74_37	-1	known	missense	c.656	p.S219Y	1.000	pfam_DNA-bd_RFX	pfam_RFX1_trans_act,pfam_DNA-bd_RFX	-	no_errors	RFX2	HGNC	ENSG00000087903				84	0	0	48	24	33.3333
HCN2	0	genome.wustl.edu	37	19	603624	603624	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	603624	603624	A	G	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	missense	c.713	p.D238G	0.995	pfam_Ion_trans_N	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				74	0	0	28	15	34.8837
ACSBG2	0	genome.wustl.edu	37	19	6165951	6165951	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6165951	6165951	G	A	SNP	ACSBG2	ENST00000252669	human	ensembl	74_37	+1	known	silent	c.663	p.A221	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG2	HGNC	ENSG00000130377				139	0	0	71	32	31.068
C3	0	genome.wustl.edu	37	19	6677886	6677886	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6677886	6677886	G	A	SNP	C3	ENST00000599668	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C3	HGNC	ENSG00000125730				65	0	0	30	17	36.1702
C3	0	genome.wustl.edu	37	19	6684608	6684608	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6684608	6684608	G	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	silent	c.4083	p.F1361	0.300	superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				210	0	0	96	49	33.7931
C3	0	genome.wustl.edu	37	19	6707489	6707489	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6707489	6707489	G	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	nonsense	c.2035	p.R679*	0.824	superfamily_Anaphylatoxin_comp_syst	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				158	0	0	70	38	35.1852
C3	0	genome.wustl.edu	37	19	6711129	6711129	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6711129	6711129	C	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1348	p.G450C	0.000	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				194	0	0	80	41	33.8843
C3	0	genome.wustl.edu	37	19	6712386	6712386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6712386	6712386	G	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.1151	p.A384V	0.990	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				114	0	0	42	12	22.2222
EMR1	0	genome.wustl.edu	37	19	6908736	6908736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	6908736	6908736	G	A	SNP	EMR1	ENST00000312053	human	ensembl	74_37	+1	known	missense	c.1075	p.V359I	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_EGF-like_Ca-bd_dom,pfam_GPS_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_EMR1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	EMR1	HGNC	ENSG00000174837				102	0	0	84	25	22.9358
ZNF557	0	genome.wustl.edu	37	19	7081448	7081448	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7081448	7081448	C	A	SNP	ZNF557	ENST00000252840	human	ensembl	74_37	+1	known	missense	c.325	p.L109I	0.004	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF557	HGNC	ENSG00000130544				37	0	0	21	13	38.2353
PEX11G	0	genome.wustl.edu	37	19	7550752	7550752	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7550752	7550752	T	C	SNP	PEX11G	ENST00000221480	human	ensembl	74_37	-1	known	missense	c.221	p.Y74C	1.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11G	HGNC	ENSG00000104883				177	0	0	89	37	29.3651
XAB2	0	genome.wustl.edu	37	19	7687232	7687232	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7687232	7687232	G	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	silent	c.1602	p.F534	0.901	smart_HAT	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				246	0	0	123	60	32.7869
XAB2	0	genome.wustl.edu	37	19	7689248	7689248	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7689248	7689248	G	A	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	silent	c.906	p.F302	0.862	smart_HAT	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				167	0	0	52	31	37.3494
XAB2	0	genome.wustl.edu	37	19	7693137	7693137	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7693137	7693137	G	T	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.99	p.F33L	1.000	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				75	0	0	41	26	38.806
CLEC4M	0	genome.wustl.edu	37	19	7831062	7831062	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7831062	7831062	T	G	SNP	CLEC4M	ENST00000327325	human	ensembl	74_37	+1	known	nonsense	c.753	p.Y251*	0.041	superfamily_C-type_lectin_fold	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	CLEC4M	HGNC	ENSG00000104938				162	0	0	83	50	37.594
TIMM44	0	genome.wustl.edu	37	19	7999114	7999114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	7999114	7999114	C	T	SNP	TIMM44	ENST00000270538	human	ensembl	74_37	-1	known	missense	c.403	p.E135K	1.000	pirsf_Tim44,tigrfam_Tim44	pfam_Tim44-like_dom,smart_Tim44-like_dom,pirsf_Tim44,tigrfam_Tim44	-	no_errors	TIMM44	HGNC	ENSG00000104980				162	0	0	60	34	36.1702
FBN3	0	genome.wustl.edu	37	19	8161429	8161429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	8161429	8161429	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.5438	p.P1813L	0.982	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				75	0	0	28	14	33.3333
FBN3	0	genome.wustl.edu	37	19	8196634	8196634	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	8196634	8196634	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	silent	c.1794	p.C598	0.997	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				56	0	0	26	20	43.4783
MYO1F	0	genome.wustl.edu	37	19	8612995	8612995	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	8612995	8612995	G	A	SNP	MYO1F	ENST00000338257	human	ensembl	74_37	-1	known	silent	c.1194	p.F398	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1F	HGNC	ENSG00000142347				310	0	0	130	65	33.3333
MUC16	0	genome.wustl.edu	37	19	9010990	9010990	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9010990	9010990	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.38928	p.S12976	0.000	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				160	0	0	105	46	30.4636
MUC16	0	genome.wustl.edu	37	19	9014190	9014190	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9014190	9014190	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38458	p.T12820P	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				98	0	0	55	28	33.7349
MUC16	0	genome.wustl.edu	37	19	9024886	9024886	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9024886	9024886	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.36976	p.T12326A	0.048	pfam_SEA_dom,smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				235	0	0	137	69	33.4951
MUC16	0	genome.wustl.edu	37	19	9028387	9028387	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9028387	9028387	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.36405	p.K12135N	0.000	pfam_SEA_dom,smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				198	0	0	93	47	33.5714
MUC16	0	genome.wustl.edu	37	19	9045784	9045784	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9045784	9045784	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.35847	p.E11949D	0.093	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				161	0	0	94	36	27.6923
MUC16	0	genome.wustl.edu	37	19	9049699	9049699	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9049699	9049699	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.31932	p.I10644	0.003	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				105	0	0	68	33	32.6733
MUC16	0	genome.wustl.edu	37	19	9056340	9056340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9056340	9056340	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.31106	p.S10369N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				152	0	0	84	41	32.8
MUC16	0	genome.wustl.edu	37	19	9056704	9056704	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9056704	9056704	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.30742	p.E10248K	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				93	0	0	43	32	42.6667
MUC16	0	genome.wustl.edu	37	19	9058293	9058293	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9058293	9058293	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.29153	p.P9718H	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				80	0	0	38	15	28.3019
MUC16	0	genome.wustl.edu	37	19	9062990	9062990	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9062990	9062990	T	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.24456	p.E8152D	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				158	0	0	80	45	36
MUC16	0	genome.wustl.edu	37	19	9067439	9067439	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9067439	9067439	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.20007	p.I6669	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				218	0	0	101	37	26.8116
MUC16	0	genome.wustl.edu	37	19	9068735	9068735	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9068735	9068735	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.18711	p.T6237	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				121	0	0	58	39	40.2062
MUC16	0	genome.wustl.edu	37	19	9068878	9068878	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9068878	9068878	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.18568	p.D6190Y	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				115	0	0	60	30	33.3333
MUC16	0	genome.wustl.edu	37	19	9069874	9069874	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9069874	9069874	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	nonsense	c.17572	p.E5858*	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				206	1	0.483092	97	69	41.5663
MUC16	0	genome.wustl.edu	37	19	9070332	9070332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9070332	9070332	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.17114	p.A5705V	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				107	0	0	66	31	31.9588
MUC16	0	genome.wustl.edu	37	19	9084370	9084370	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9084370	9084370	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.7445	p.D2482G	0.006	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				91	0	0	40	21	34.4262
MUC16	0	genome.wustl.edu	37	19	9086216	9086216	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9086216	9086216	T	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.5599	p.T1867A	0.007	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				89	0	0	39	13	25
OR7G1	0	genome.wustl.edu	37	19	9226198	9226198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9226198	9226198	A	G	SNP	OR7G1	ENST00000293614	human	ensembl	74_37	-1	known	missense	c.242	p.I81T	0.331	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807				256	0	0	167	57	25.4464
OR7G1	0	genome.wustl.edu	37	19	9226251	9226251	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9226251	9226251	G	T	SNP	OR7G1	ENST00000293614	human	ensembl	74_37	-1	known	silent	c.189	p.L63	0.893	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7G1	HGNC	ENSG00000161807				237	0	0	139	71	33.8095
OR7D2	0	genome.wustl.edu	37	19	9296766	9296766	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9296766	9296766	C	T	SNP	OR7D2	ENST00000344248	human	ensembl	74_37	+1	known	silent	c.309	p.F103	0.201	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7D2	HGNC	ENSG00000188000				228	0	0	123	57	31.6667
OR7E24	0	genome.wustl.edu	37	19	9362082	9362082	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9362082	9362082	T	G	SNP	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	missense	c.363	p.F121L	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				78	0	0	49	14	22.2222
OR7E24	0	genome.wustl.edu	37	19	9362171	9362171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9362171	9362171	G	A	SNP	OR7E24	ENST00000456448	human	ensembl	74_37	+1	known	missense	c.452	p.R151Q	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7E24	HGNC	ENSG00000237521				68	0	0	23	19	45.2381
ZNF699	0	genome.wustl.edu	37	19	9406606	9406606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9406606	9406606	C	T	SNP	ZNF699	ENST00000308650	human	ensembl	74_37	-1	known	missense	c.1474	p.E492K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110				73	0	0	41	26	38.806
ZNF699	0	genome.wustl.edu	37	19	9407394	9407394	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9407394	9407394	C	A	SNP	ZNF699	ENST00000308650	human	ensembl	74_37	-1	known	missense	c.686	p.G229V	0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF699	HGNC	ENSG00000196110				158	0	0	129	60	31.746
ZNF559	0	genome.wustl.edu	37	19	9452436	9452436	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9452436	9452436	C	T	SNP	ZNF559	ENST00000393883	human	ensembl	74_37	+1	known	silent	c.309	p.H103	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF559	HGNC	ENSG00000188321				93	0	0	61	29	32.2222
ZNF560	0	genome.wustl.edu	37	19	9577259	9577259	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9577259	9577259	T	G	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.2364	p.K788N	0.438	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				136	0	0	79	40	33.6134
ZNF560	0	genome.wustl.edu	37	19	9577542	9577542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9577542	9577542	C	T	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.2081	p.R694Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				235	1	0.423729	133	68	33.8308
ZNF560	0	genome.wustl.edu	37	19	9577768	9577768	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9577768	9577768	A	C	SNP	ZNF560	ENST00000301480	human	ensembl	74_37	-1	known	missense	c.1855	p.L619V	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028				215	0	0	141	63	30.8824
ZNF121	0	genome.wustl.edu	37	19	9676675	9676675	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9676675	9676675	C	T	SNP	ZNF121	ENST00000586602	human	ensembl	74_37	-1	known	missense	c.1114	p.E372K	0.047	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF121	HGNC	ENSG00000197961				61	0	0	38	14	26.9231
ZNF562	0	genome.wustl.edu	37	19	9764135	9764135	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9764135	9764135	C	A	SNP	ZNF562	ENST00000448622	human	ensembl	74_37	-1	known	missense	c.771	p.K257N	0.500	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF562	HGNC	ENSG00000171466				120	0	0	62	33	34.7368
ZNF812	0	genome.wustl.edu	37	19	9800800	9800800	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9800800	9800800	T	G	SNP	ZNF812	ENST00000536819	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.505	-	-	-	no_errors	ZNF812	HGNC	ENSG00000224689				27	0	0	15	17	53.125
ZNF846	0	genome.wustl.edu	37	19	9868330	9868330	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9868330	9868330	C	A	SNP	ZNF846	ENST00000397902	human	ensembl	74_37	-1	known	nonsense	c.1423	p.E475*	1.000	smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605				177	0	0	83	44	34.6457
ZNF846	0	genome.wustl.edu	37	19	9869139	9869139	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	19	9869139	9869139	C	A	SNP	ZNF846	ENST00000397902	human	ensembl	74_37	-1	known	missense	c.614	p.R205I	0.000	smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605				85	0	0	103	7	6.36364
EIF5B	0	genome.wustl.edu	37	2	100009490	100009490	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	100009490	100009490	G	T	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.2809	p.D937Y	1.000	pfam_Transl_elong_EFTu/EF1A_2	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				72	0	0	39	19	32.7586
EIF5B	0	genome.wustl.edu	37	2	100011005	100011005	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	100011005	100011005	A	C	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.3046	p.K1016Q	1.000	pfam_TIF_IF2_dom3,superfamily_TIF_IF2_dom3	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417				275	0	0	187	89	32.2464
REV1	0	genome.wustl.edu	37	2	100037985	100037985	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	100037985	100037985	T	G	SNP	REV1	ENST00000258428	human	ensembl	74_37	-1	known	missense	c.1807	p.K603Q	0.561	pfam_DNA_repair_prot_UmuC-like,pirsf_REV1,pfscan_DNA_repair_prot_UmuC-like_N	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945				162	0	0	99	41	29.2857
AFF3	0	genome.wustl.edu	37	2	100181988	100181988	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	100181988	100181988	G	T	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.3155	p.S1052Y	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				162	0	0	140	13	8.49673
AFF3	0	genome.wustl.edu	37	2	100209899	100209899	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	100209899	100209899	A	C	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.2299	p.F767V	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				170	0	0	87	43	33.0769
TAF1B	0	genome.wustl.edu	37	2	10045058	10045058	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	10045058	10045058	T	G	SNP	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	missense	c.878	p.F293C	1.000	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				129	0	0	72	49	40.4959
NPAS2	0	genome.wustl.edu	37	2	101549440	101549440	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	101549440	101549440	G	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	nonsense	c.445	p.E149*	1.000	smart_PAS,prints_Nuc_translocat,pfscan_PAS,tigrfam_PAS	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				103	1	0.961538	48	24	33.3333
MAP4K4	0	genome.wustl.edu	37	2	102456429	102456429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	102456429	102456429	C	T	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.922	p.R308C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				99	0	0	62	17	21.519
IL1R2	0	genome.wustl.edu	37	2	102636172	102636172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	102636172	102636172	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	missense	c.586	p.D196N	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				58	0	0	23	11	32.3529
IL18R1	0	genome.wustl.edu	37	2	103006646	103006646	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	103006646	103006646	A	G	SNP	IL18R1	ENST00000233957	human	ensembl	74_37	+1	known	silent	c.1080	p.R360	0.091	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL18R1	HGNC	ENSG00000115604				60	0	0	40	19	32.2034
IL18RAP	0	genome.wustl.edu	37	2	103053710	103053710	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	103053710	103053710	C	T	SNP	IL18RAP	ENST00000264260	human	ensembl	74_37	+1	known	silent	c.618	p.I206	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL18RAP	HGNC	ENSG00000115607				112	0	0	62	33	34.7368
SLC9A4	0	genome.wustl.edu	37	2	103142801	103142801	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	103142801	103142801	C	A	SNP	SLC9A4	ENST00000295269	human	ensembl	74_37	+1	known	missense	c.2034	p.F678L	0.002	NULL	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251				92	0	0	55	33	37.5
SLC9A2	0	genome.wustl.edu	37	2	103281693	103281693	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	103281693	103281693	G	A	SNP	SLC9A2	ENST00000233969	human	ensembl	74_37	+1	known	silent	c.888	p.A296	0.029	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_2,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A2	HGNC	ENSG00000115616				179	0	0	93	50	34.965
TMEM182	0	genome.wustl.edu	37	2	103431205	103431205	+	Splice_Site	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	103431205	103431205	A	C	SNP	TMEM182	ENST00000412401	human	ensembl	74_37	+1	known	splice_site	c.470-2	e5-2	0.998	-	-	-	no_errors	TMEM182	HGNC	ENSG00000170417				37	0	0	24	8	25
TGFBRAP1	0	genome.wustl.edu	37	2	105915107	105915107	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	105915107	105915107	C	T	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	silent	c.744	p.E248	1.000	pfam_Citron	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966				81	0	0	45	26	36.6197
PLGLA	0	genome.wustl.edu	37	2	107009331	107009331	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	107009331	107009331	G	A	SNP	PLGLA	ENST00000482249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	PLGLA	HGNC	ENSG00000240935				98	0	0	59	33	35.8696
RGPD3	0	genome.wustl.edu	37	2	107049441	107049441	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	107049441	107049441	C	A	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.2419	p.D807Y	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				96	0	0	54	30	35.7143
RGPD3	0	genome.wustl.edu	37	2	107049579	107049579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	107049579	107049579	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.2368	p.P790S	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				86	0	0	56	27	32.5301
RGPD3	0	genome.wustl.edu	37	2	107050701	107050701	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	107050701	107050701	G	T	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.2188	p.L730I	0.890	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165				111	0	0	76	38	33.3333
ST6GAL2	0	genome.wustl.edu	37	2	107450509	107450509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	107450509	107450509	G	A	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.1037	p.S346L	1.000	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				145	0	0	87	38	30.4
RGPD4	0	genome.wustl.edu	37	2	108487346	108487346	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	108487346	108487346	T	G	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.2886	p.I962M	0.997	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				143	0	0	98	57	36.7742
SLC5A7	0	genome.wustl.edu	37	2	108626988	108626988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	108626988	108626988	A	G	SNP	SLC5A7	ENST00000264047	human	ensembl	74_37	+1	known	missense	c.1414	p.I472V	0.003	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665				88	0	0	67	35	34.3137
SULT1C3	0	genome.wustl.edu	37	2	108875197	108875197	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	108875197	108875197	C	T	SNP	SULT1C3	ENST00000329106	human	ensembl	74_37	+1	known	silent	c.534	p.G178	0.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1C3	HGNC	ENSG00000196228				105	0	0	46	29	38.6667
GCC2	0	genome.wustl.edu	37	2	109086173	109086173	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109086173	109086173	G	T	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	nonsense	c.388	p.E130*	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				87	0	0	78	39	33.3333
GCC2	0	genome.wustl.edu	37	2	109087388	109087388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109087388	109087388	G	A	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	missense	c.1603	p.E535K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				123	0	0	86	47	35.3383
GCC2	0	genome.wustl.edu	37	2	109088540	109088540	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109088540	109088540	C	T	SNP	GCC2	ENST00000309863	human	ensembl	74_37	+1	known	nonsense	c.2755	p.R919*	0.995	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968				64	0	0	83	38	31.405
RANBP2	0	genome.wustl.edu	37	2	109379884	109379884	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109379884	109379884	T	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.2889	p.N963K	0.999	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				105	0	0	61	38	38.3838
RANBP2	0	genome.wustl.edu	37	2	109380976	109380976	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109380976	109380976	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.3981	p.T1327	0.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				144	0	0	73	42	36.5217
RANBP2	0	genome.wustl.edu	37	2	109382509	109382509	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109382509	109382509	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.5514	p.G1838	0.676	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				176	0	0	106	36	25.3521
RANBP2	0	genome.wustl.edu	37	2	109383881	109383881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109383881	109383881	G	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.6886	p.E2296K	1.000	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				253	0	0	139	80	36.5297
SNTG2	0	genome.wustl.edu	37	2	1093883	1093883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	1093883	1093883	G	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	missense	c.212	p.R71H	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				242	0	0	110	56	33.7349
RANBP2	0	genome.wustl.edu	37	2	109400188	109400188	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109400188	109400188	A	C	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	missense	c.9506	p.N3169T	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				138	0	0	80	61	43.2624
CCDC138	0	genome.wustl.edu	37	2	109489943	109489943	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	109489943	109489943	C	A	SNP	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	missense	c.1730	p.S577Y	0.316	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006				85	0	0	63	25	28.4091
KCNF1	0	genome.wustl.edu	37	2	11053753	11053753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	11053753	11053753	C	T	SNP	KCNF1	ENST00000295082	human	ensembl	74_37	+1	known	missense	c.1201	p.P401S	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNF1	HGNC	ENSG00000162975				105	0	0	61	4	6.15385
NPHP1	0	genome.wustl.edu	37	2	110901211	110901211	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	110901211	110901211	G	A	SNP	NPHP1	ENST00000316534	human	ensembl	74_37	-1	known	silent	c.1605	p.G535	0.106	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NPHP1	HGNC	ENSG00000144061				65	0	0	40	19	32.2034
BUB1	0	genome.wustl.edu	37	2	111419366	111419366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	111419366	111419366	G	A	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	missense	c.1010	p.A337V	0.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				166	0	0	117	9	7.14286
BUB1	0	genome.wustl.edu	37	2	111431780	111431780	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	111431780	111431780	C	A	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	missense	c.108	p.E36D	0.996	pfam_Mad3_BUB1_I,smart_Mad3_BUB1_I	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				59	0	0	42	20	32.2581
ANAPC1	0	genome.wustl.edu	37	2	112583386	112583386	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	112583386	112583386	T	G	SNP	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	missense	c.2672	p.E891A	0.982	NULL	NULL	-	no_errors	ANAPC1	HGNC	ENSG00000153107				69	0	0	50	20	28.5714
TTL	0	genome.wustl.edu	37	2	113286288	113286288	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113286288	113286288	C	T	SNP	TTL	ENST00000233336	human	ensembl	74_37	+1	known	silent	c.1050	p.I350	0.998	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTL	HGNC	ENSG00000114999				137	0	0	75	35	31.8182
POLR1B	0	genome.wustl.edu	37	2	113310287	113310287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113310287	113310287	G	A	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	missense	c.1166	p.R389Q	1.000	pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				75	0	0	52	34	39.5349
POLR1B	0	genome.wustl.edu	37	2	113330196	113330196	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113330196	113330196	T	G	SNP	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	missense	c.2246	p.L749R	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				130	0	0	92	44	32.3529
CKAP2L	0	genome.wustl.edu	37	2	113513567	113513567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113513567	113513567	C	T	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.1381	p.A461T	0.660	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				238	0	0	191	80	29.5203
CKAP2L	0	genome.wustl.edu	37	2	113514428	113514428	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113514428	113514428	C	T	SNP	CKAP2L	ENST00000302450	human	ensembl	74_37	-1	known	missense	c.520	p.E174K	0.000	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607				57	0	0	32	25	43.8596
IL1A	0	genome.wustl.edu	37	2	113532656	113532656	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113532656	113532656	T	G	SNP	IL1A	ENST00000263339	human	ensembl	74_37	-1	known	missense	c.804	p.E268D	0.000	superfamily_Cytokine_IL1-like	pfam_IL-1_propep,pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1_alpha,prints_IL-1_alpha/beta,prints_IL-1	-	no_errors	IL1A	HGNC	ENSG00000115008				80	0	0	46	26	36.1111
IL1B	0	genome.wustl.edu	37	2	113593779	113593779	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	113593779	113593779	C	A	SNP	IL1B	ENST00000263341	human	ensembl	74_37	-1	known	nonsense	c.28	p.E10*	0.323	pfam_IL-1_propep	pfam_IL-1,pfam_IL-1_propep,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1_beta,prints_IL-1_alpha/beta,prints_IL-1,prints_IL-1_fam/FGF_fam,prints_IL-1RA/IL-36	-	no_errors	IL1B	HGNC	ENSG00000125538				86	0	0	48	24	33.3333
PAX8	0	genome.wustl.edu	37	2	114002048	114002048	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	114002048	114002048	G	A	SNP	PAX8	ENST00000429538	human	ensembl	74_37	-1	known	silent	c.345	p.G115	0.756	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Pax2_C,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX8	HGNC	ENSG00000125618				390	0	0	179	98	35.3791
CBWD2	0	genome.wustl.edu	37	2	114210717	114210717	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	114210717	114210717	T	C	SNP	CBWD2	ENST00000259199	human	ensembl	74_37	+1	known	silent	c.432	p.G144	1.000	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD2	HGNC	ENSG00000136682				82	0	0	63	34	35.0515
CBWD2	0	genome.wustl.edu	37	2	114220051	114220051	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	114220051	114220051	G	T	SNP	CBWD2	ENST00000259199	human	ensembl	74_37	+1	known	missense	c.642	p.K214N	0.052	pfam_CobW/HypB/UreG_dom,superfamily_P-loop_NTPase	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD2	HGNC	ENSG00000136682				106	0	0	88	49	35.7664
SLC35F5	0	genome.wustl.edu	37	2	114476740	114476740	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	114476740	114476740	C	T	SNP	SLC35F5	ENST00000245680	human	ensembl	74_37	-1	known	missense	c.1487	p.R496Q	1.000	NULL	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084				69	0	0	49	20	28.9855
ACTR3	0	genome.wustl.edu	37	2	114699791	114699791	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	114699791	114699791	T	C	SNP	ACTR3	ENST00000263238	human	ensembl	74_37	+1	known	missense	c.713	p.L238S	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR3	HGNC	ENSG00000115091				42	0	0	39	18	31.5789
GREB1	0	genome.wustl.edu	37	2	11696778	11696778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	11696778	11696778	G	A	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.38	p.R13H	0.996	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208				124	0	0	78	36	31.5789
NTSR2	0	genome.wustl.edu	37	2	11800191	11800191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	11800191	11800191	C	T	SNP	NTSR2	ENST00000306928	human	ensembl	74_37	-1	known	missense	c.967	p.V323I	0.014	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT2_rcpt,prints_NT_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NTSR2	HGNC	ENSG00000169006				110	0	0	57	30	34.4828
DDX18	0	genome.wustl.edu	37	2	118582580	118582580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	118582580	118582580	G	A	SNP	DDX18	ENST00000263239	human	ensembl	74_37	+1	known	missense	c.1271	p.R424Q	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX18	HGNC	ENSG00000088205				123	0	0	82	54	39.7059
CCDC93	0	genome.wustl.edu	37	2	118766149	118766149	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	118766149	118766149	C	A	SNP	CCDC93	ENST00000376300	human	ensembl	74_37	-1	known	missense	c.128	p.R43I	1.000	pfam_DUF2037	pfam_DUF2037	-	no_errors	CCDC93	HGNC	ENSG00000125633				149	0	0	112	59	34.5029
TMEM37	0	genome.wustl.edu	37	2	120194653	120194653	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	120194653	120194653	G	A	SNP	TMEM37	ENST00000306406	human	ensembl	74_37	+1	known	silent	c.210	p.T70	0.000	NULL	NULL	-	no_errors	TMEM37	HGNC	ENSG00000171227				132	0	0	54	15	21.7391
PTPN4	0	genome.wustl.edu	37	2	120643418	120643418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	120643418	120643418	G	A	SNP	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	missense	c.635	p.R212H	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,prints_Band_41_fam	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				151	0	0	114	59	34.104
EPB41L5	0	genome.wustl.edu	37	2	120918482	120918482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	120918482	120918482	C	T	SNP	EPB41L5	ENST00000263713	human	ensembl	74_37	+1	known	missense	c.1819	p.P607S	0.004	NULL	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L5	HGNC	ENSG00000115109				191	0	0	118	55	31.7919
RALB	0	genome.wustl.edu	37	2	121043651	121043651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	121043651	121043651	G	A	SNP	RALB	ENST00000474855	human	ensembl	74_37	+1	known	missense	c.382	p.E128K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118				79	0	0	35	23	39.6552
RALB	0	genome.wustl.edu	37	2	121047166	121047166	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	121047166	121047166	C	A	SNP	RALB	ENST00000474855	human	ensembl	74_37	+1	known	missense	c.400	p.L134I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RALB	HGNC	ENSG00000144118				202	0	0	146	26	15.1163
GLI2	0	genome.wustl.edu	37	2	121740439	121740439	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	121740439	121740439	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				125	0	0	67	22	24.7191
CLASP1	0	genome.wustl.edu	37	2	122273287	122273287	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	122273287	122273287	C	T	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	missense	c.598	p.E200K	1.000	pfam_CLASP_N_dom,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				43	0	0	29	15	34.0909
CLASP1	0	genome.wustl.edu	37	2	122273335	122273335	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	122273335	122273335	G	A	SNP	CLASP1	ENST00000263710	human	ensembl	74_37	-1	known	nonsense	c.550	p.R184*	1.000	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054				31	0	0	22	12	35.2941
SNTG2	0	genome.wustl.edu	37	2	1243521	1243521	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	1243521	1243521	G	A	SNP	SNTG2	ENST00000308624	human	ensembl	74_37	+1	known	silent	c.861	p.A287	0.994	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SNTG2	HGNC	ENSG00000172554				47	0	0	13	7	35
CNTNAP5	0	genome.wustl.edu	37	2	125204342	125204342	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	125204342	125204342	C	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.746	p.A249V	0.404	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				78	0	0	35	24	40.678
BIN1	0	genome.wustl.edu	37	2	127826515	127826515	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	127826515	127826515	T	G	SNP	BIN1	ENST00000316724	human	ensembl	74_37	-1	known	missense	c.504	p.E168D	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717				110	0	0	45	14	23.7288
CYP27C1	0	genome.wustl.edu	37	2	127953001	127953001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	127953001	127953001	A	G	SNP	CYP27C1	ENST00000335247	human	ensembl	74_37	-1	known	missense	c.629	p.I210T	0.988	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP27C1	HGNC	ENSG00000186684				79	0	0	43	18	29.5082
ERCC3	0	genome.wustl.edu	37	2	128028934	128028934	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128028934	128028934	C	T	SNP	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	silent	c.1923	p.G641	0.989	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161				290	0	0	164	85	34.1365
ERCC3	0	genome.wustl.edu	37	2	128051178	128051178	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128051178	128051178	A	G	SNP	ERCC3	ENST00000285398	human	ensembl	74_37	-1	known	missense	c.145	p.S49P	0.999	NULL	pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_Helicase_Ercc3,tigrfam_Helicase_Ercc3	-	no_errors	ERCC3	HGNC	ENSG00000163161				109	0	0	40	20	33.3333
MAP3K2	0	genome.wustl.edu	37	2	128079820	128079820	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128079820	128079820	T	G	SNP	MAP3K2	ENST00000344908	human	ensembl	74_37	-1	known	missense	c.847	p.T283P	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K2	HGNC	ENSG00000169967				58	0	0	33	21	38.8889
MYO7B	0	genome.wustl.edu	37	2	128346073	128346073	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128346073	128346073	G	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.1797	p.E599D	0.082	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				107	0	0	53	22	29.3333
WDR33	0	genome.wustl.edu	37	2	128464123	128464123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128464123	128464123	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.3785	p.R1262Q	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				145	0	0	56	36	39.1304
WDR33	0	genome.wustl.edu	37	2	128471562	128471562	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128471562	128471562	C	T	SNP	WDR33	ENST00000322313	human	ensembl	74_37	-1	known	missense	c.2903	p.G968D	1.000	NULL	pfam_WD40_repeat,pfam_Collagen,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR33	HGNC	ENSG00000136709				107	0	0	44	26	37.1429
TRIB2	0	genome.wustl.edu	37	2	12863671	12863671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	12863671	12863671	G	A	SNP	TRIB2	ENST00000155926	human	ensembl	74_37	+1	known	missense	c.556	p.E186K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TRIB2	HGNC	ENSG00000071575				109	0	0	44	26	37.1429
UGGT1	0	genome.wustl.edu	37	2	128878797	128878797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128878797	128878797	G	A	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	missense	c.998	p.R333Q	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				126	0	0	68	29	29.8969
UGGT1	0	genome.wustl.edu	37	2	128914829	128914829	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	128914829	128914829	A	C	SNP	UGGT1	ENST00000259253	human	ensembl	74_37	+1	known	missense	c.2264	p.D755A	1.000	NULL	pfam_UDP-g_GGtrans	-	no_errors	UGGT1	HGNC	ENSG00000136731				55	0	0	38	23	37.7049
POTEF	0	genome.wustl.edu	37	2	130832596	130832596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	130832596	130832596	C	T	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	missense	c.2449	p.E817K	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				322	0	0	139	95	40.5983
SMPD4	0	genome.wustl.edu	37	2	130911999	130911999	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	130911999	130911999	A	C	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	missense	c.1627	p.F543V	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699				27	0	0	5	6	54.5455
CFC1	0	genome.wustl.edu	37	2	131356288	131356288	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	131356288	131356288	G	A	SNP	CFC1	ENST00000259216	human	ensembl	74_37	-1	known	silent	c.174	p.F58	0.000	NULL	pfam_Cryptic/Cripto_CFC-dom,pfscan_EG-like_dom	-	no_errors	CFC1	HGNC	ENSG00000136698				87	0	0	56	13	18.8406
GPR148	0	genome.wustl.edu	37	2	131487111	131487111	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	131487111	131487111	C	T	SNP	GPR148	ENST00000309926	human	ensembl	74_37	+1	known	silent	c.387	p.F129	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR148	HGNC	ENSG00000173302				64	0	0	20	15	42.8571
AMER3	0	genome.wustl.edu	37	2	131521511	131521511	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	131521511	131521511	G	A	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	silent	c.1866	p.S622	0.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171				98	0	0	44	20	31.25
ARHGEF4	0	genome.wustl.edu	37	2	131796522	131796522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	131796522	131796522	G	A	SNP	ARHGEF4	ENST00000326016	human	ensembl	74_37	+1	known	missense	c.664	p.E222K	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002				90	0	0	28	19	40.4255
ARHGEF4	0	genome.wustl.edu	37	2	131801887	131801887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	131801887	131801887	G	A	SNP	ARHGEF4	ENST00000326016	human	ensembl	74_37	+1	known	missense	c.1615	p.D539N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002				24	0	0	10	4	28.5714
NCKAP5	0	genome.wustl.edu	37	2	133489398	133489398	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	133489398	133489398	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.5355	p.S1785	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				122	0	0	40	22	35.4839
NCKAP5	0	genome.wustl.edu	37	2	133539768	133539768	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	133539768	133539768	A	C	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.4616	p.V1539G	0.323	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				109	0	0	65	28	30.1075
MGAT5	0	genome.wustl.edu	37	2	135107416	135107416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135107416	135107416	G	A	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	missense	c.1153	p.E385K	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127				146	1	0.680272	85	31	26.7241
ACMSD	0	genome.wustl.edu	37	2	135616864	135616864	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135616864	135616864	T	G	SNP	ACMSD	ENST00000356140	human	ensembl	74_37	+1	known	missense	c.136	p.F46V	1.000	pfam_Amidohydro_2	pfam_Amidohydro_2	-	no_errors	ACMSD	HGNC	ENSG00000153086				83	0	0	50	30	37.5
MAP3K19	0	genome.wustl.edu	37	2	135738478	135738478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135738478	135738478	T	C	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.3833	p.Y1278C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				73	0	0	35	17	32.6923
MAP3K19	0	genome.wustl.edu	37	2	135740777	135740777	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135740777	135740777	C	A	SNP	MAP3K19	ENST00000392915	human	ensembl	74_37	-1	putative	missense	c.3398	p.R1133I	0.000	NULL	NULL	-	no_errors	MAP3K19	HGNC	ENSG00000176601				123	0	0	97	40	29.1971
MAP3K19	0	genome.wustl.edu	37	2	135741299	135741299	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135741299	135741299	C	A	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	nonsense	c.3169	p.E1057*	0.998	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				98	0	0	66	35	34.6535
MAP3K19	0	genome.wustl.edu	37	2	135756376	135756376	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135756376	135756376	T	C	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.506	p.N169S	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601				92	0	0	51	27	34.6154
RAB3GAP1	0	genome.wustl.edu	37	2	135815651	135815651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135815651	135815651	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	missense	c.145	p.E49K	1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				40	0	0	29	14	32.5581
RAB3GAP1	0	genome.wustl.edu	37	2	135878432	135878432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	135878432	135878432	G	A	SNP	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	missense	c.692	p.R231Q	1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839				173	0	0	112	49	30.4348
R3HDM1	0	genome.wustl.edu	37	2	136393692	136393692	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	136393692	136393692	A	C	SNP	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	missense	c.842	p.K281T	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				120	0	0	99	44	30.7692
THSD7B	0	genome.wustl.edu	37	2	137814328	137814328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	137814328	137814328	G	A	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.478	p.E160K	1.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				228	0	0	112	74	39.7849
THSD7B	0	genome.wustl.edu	37	2	137988724	137988724	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	137988724	137988724	T	C	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	missense	c.1834	p.S612P	0.809	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				44	0	0	22	10	31.25
THSD7B	0	genome.wustl.edu	37	2	138400060	138400060	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	138400060	138400060	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	nonsense	c.3811	p.R1271*	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				139	1	0.714286	87	44	33.5878
SPOPL	0	genome.wustl.edu	37	2	139316695	139316695	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	139316695	139316695	A	G	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.584	p.E195G	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				163	0	0	104	51	32.9032
ENSG00000241772	0	genome.wustl.edu	37	2	139326757	139326757	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	139326757	139326757	A	G	SNP	ENSG00000241772	ENST00000449869	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.952	-	-	-	no_errors	AC092620.2	Clone_based_vega_gene	ENSG00000241772				77	0	0	49	31	38.75
LRP1B	0	genome.wustl.edu	37	2	141027830	141027830	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141027830	141027830	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13228	p.T4410A	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				96	0	0	65	31	32.2917
LRP1B	0	genome.wustl.edu	37	2	141108514	141108514	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141108514	141108514	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.11744	p.S3915Y	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				122	1	0.813008	99	48	32.6531
LRP1B	0	genome.wustl.edu	37	2	141128375	141128375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141128375	141128375	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10912	p.R3638W	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				190	0	0	97	56	36.6013
LRP1B	0	genome.wustl.edu	37	2	141143550	141143550	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141143550	141143550	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.10443	p.F3481	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				145	0	0	110	43	28.1046
LRP1B	0	genome.wustl.edu	37	2	141201904	141201904	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141201904	141201904	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.10289	p.D3430G	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				135	1	0.735294	94	45	32.3741
LRP1B	0	genome.wustl.edu	37	2	141245224	141245224	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141245224	141245224	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.9205	p.R3069C	0.993	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				90	0	0	85	34	28.5714
LRP1B	0	genome.wustl.edu	37	2	141291621	141291621	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141291621	141291621	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.7731	p.C2577	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				85	0	0	57	34	37.3626
LRP1B	0	genome.wustl.edu	37	2	141460006	141460006	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141460006	141460006	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.6140	p.I2047T	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				158	0	0	79	24	23.301
LRP1B	0	genome.wustl.edu	37	2	141474372	141474372	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141474372	141474372	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.5772	p.I1924	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				104	0	0	79	5	5.95238
LRP1B	0	genome.wustl.edu	37	2	141474386	141474386	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141474386	141474386	C	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	splice_site	c.5759-1	e36-1	1.000	-	-	-	no_errors	LRP1B	HGNC	ENSG00000168702				85	0	0	44	27	38.0282
LRP1B	0	genome.wustl.edu	37	2	141747168	141747168	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141747168	141747168	C	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.2703	p.K901N	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				154	1	0.645161	88	42	32.3077
LRP1B	0	genome.wustl.edu	37	2	141762987	141762987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141762987	141762987	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.2420	p.T807I	0.998	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				79	0	0	47	31	39.7436
LRP1B	0	genome.wustl.edu	37	2	141773306	141773306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141773306	141773306	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.2149	p.D717N	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				81	0	0	44	22	33.3333
LRP1B	0	genome.wustl.edu	37	2	141812693	141812693	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141812693	141812693	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	nonsense	c.1544	p.S515*	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				68	0	0	45	20	30.7692
LRP1B	0	genome.wustl.edu	37	2	141816481	141816481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141816481	141816481	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1379	p.R460Q	0.978	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				60	0	0	50	15	23.0769
LRP1B	0	genome.wustl.edu	37	2	141819833	141819833	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141819833	141819833	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1023	p.F341L	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				68	0	0	43	18	29.5082
LRP1B	0	genome.wustl.edu	37	2	141946119	141946119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	141946119	141946119	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.884	p.R295Q	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				83	0	0	42	18	30
KYNU	0	genome.wustl.edu	37	2	143676232	143676232	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	143676232	143676232	C	A	SNP	KYNU	ENST00000264170	human	ensembl	74_37	+1	known	missense	c.224	p.S75Y	1.000	superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,tigrfam_Kynureninase	-	no_errors	KYNU	HGNC	ENSG00000115919				49	0	0	42	15	26.3158
ARHGAP15	0	genome.wustl.edu	37	2	143959745	143959745	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	143959745	143959745	G	T	SNP	ARHGAP15	ENST00000295095	human	ensembl	74_37	+1	known	missense	c.208	p.D70Y	0.999	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884				100	0	0	93	35	27.3438
GTDC1	0	genome.wustl.edu	37	2	144899590	144899590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	144899590	144899590	A	G	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	missense	c.380	p.V127A	0.051	pfam_GlycosylTrfase_1_N	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				73	0	0	53	19	26.3889
ZEB2	0	genome.wustl.edu	37	2	145147102	145147102	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	145147102	145147102	A	G	SNP	ZEB2	ENST00000303660	human	ensembl	74_37	-1	known	silent	c.3561	p.D1187	0.835	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZEB2	HGNC	ENSG00000169554				325	0	0	167	88	34.5098
MBD5	0	genome.wustl.edu	37	2	149247655	149247655	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	149247655	149247655	G	T	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.3755	p.R1252I	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406				133	0	0	69	32	31.6832
EPC2	0	genome.wustl.edu	37	2	149511500	149511500	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	149511500	149511500	T	C	SNP	EPC2	ENST00000258484	human	ensembl	74_37	+1	known	missense	c.464	p.V155A	1.000	NULL	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999				20	0	0	5	7	58.3333
KIF5C	0	genome.wustl.edu	37	2	149840179	149840179	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	149840179	149840179	C	T	SNP	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	missense	c.1615	p.L539F	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				32	0	0	39	14	26.4151
LYPD6B	0	genome.wustl.edu	37	2	150061822	150061822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	150061822	150061822	G	A	SNP	LYPD6B	ENST00000280115	human	ensembl	74_37	+1	known	missense	c.133	p.A45T	0.000	NULL	NULL	-	no_errors	LYPD6B	HGNC	ENSG00000150556				242	0	0	134	60	30.9278
RND3	0	genome.wustl.edu	37	2	151331453	151331453	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	151331453	151331453	G	A	SNP	RND3	ENST00000263895	human	ensembl	74_37	-1	known	missense	c.284	p.S95L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RND3	HGNC	ENSG00000115963				65	0	0	41	18	30.5085
RIF1	0	genome.wustl.edu	37	2	152296636	152296636	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152296636	152296636	A	C	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.1642	p.T548P	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				34	0	0	32	19	37.2549
RIF1	0	genome.wustl.edu	37	2	152308139	152308139	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152308139	152308139	G	T	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.2264	p.R755I	0.996	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				56	0	0	47	25	34.7222
RIF1	0	genome.wustl.edu	37	2	152320412	152320412	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152320412	152320412	G	T	SNP	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	missense	c.4378	p.D1460Y	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				73	0	0	51	25	32.8947
NEB	0	genome.wustl.edu	37	2	152352870	152352870	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152352870	152352870	C	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	nonsense	c.24406	p.E8136*	1.000	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				21	0	0	13	5	27.7778
NEB	0	genome.wustl.edu	37	2	152381115	152381115	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152381115	152381115	C	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.22288	p.D7430Y	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				268	0	0	115	54	31.9527
NEB	0	genome.wustl.edu	37	2	152382699	152382699	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152382699	152382699	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.22023	p.A7341	0.796	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				70	0	0	47	17	26.5625
NEB	0	genome.wustl.edu	37	2	152411448	152411448	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152411448	152411448	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.19425	p.I6475	0.975	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				100	0	0	55	34	38.2022
NEB	0	genome.wustl.edu	37	2	152432773	152432773	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152432773	152432773	G	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.16800	p.I5600	0.934	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				106	1	0.934579	68	34	33.3333
NEB	0	genome.wustl.edu	37	2	152466440	152466440	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152466440	152466440	C	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.12213	p.K4071N	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				131	0	0	69	45	39.4737
NEB	0	genome.wustl.edu	37	2	152474792	152474792	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152474792	152474792	A	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.11073	p.N3691	0.996	pfam_Nebulin_35r-motif,smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				225	0	0	116	56	32.5581
NEB	0	genome.wustl.edu	37	2	152476236	152476236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152476236	152476236	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.10601	p.H3534R	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				92	0	0	64	29	31.1828
NEB	0	genome.wustl.edu	37	2	152490194	152490194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152490194	152490194	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.9388	p.R3130W	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				235	0	0	110	63	36.4162
NEB	0	genome.wustl.edu	37	2	152492791	152492791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152492791	152492791	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.9052	p.D3018N	0.998	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				41	0	0	27	15	35.7143
NEB	0	genome.wustl.edu	37	2	152507230	152507230	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152507230	152507230	T	C	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.7085	p.D2362G	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				413	0	0	263	122	31.6883
NEB	0	genome.wustl.edu	37	2	152512918	152512918	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152512918	152512918	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.6244	p.E2082K	0.998	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				147	0	0	96	54	36
NEB	0	genome.wustl.edu	37	2	152521935	152521935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152521935	152521935	C	T	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.5150	p.R1717H	1.000	smart_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				55	0	0	25	15	37.5
NEB	0	genome.wustl.edu	37	2	152548380	152548380	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152548380	152548380	C	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.2209	p.D737Y	1.000	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				14	0	0	5	7	58.3333
NEB	0	genome.wustl.edu	37	2	152563476	152563476	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152563476	152563476	T	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.1071	p.G357	0.006	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				16	0	0	9	5	35.7143
CACNB4	0	genome.wustl.edu	37	2	152709980	152709980	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	152709980	152709980	T	C	SNP	CACNB4	ENST00000539935	human	ensembl	74_37	-1	known	silent	c.1098	p.K366	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389				17	0	0	9	5	35.7143
FMNL2	0	genome.wustl.edu	37	2	153475668	153475668	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	153475668	153475668	A	C	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1623	p.E541D	0.929	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				61	0	0	39	11	22
FMNL2	0	genome.wustl.edu	37	2	153486227	153486227	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	153486227	153486227	A	G	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.2458	p.K820E	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				15	0	0	9	9	50
FMNL2	0	genome.wustl.edu	37	2	153488588	153488588	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	153488588	153488588	G	T	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	nonsense	c.2617	p.E873*	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827				70	0	0	38	34	47.2222
PRPF40A	0	genome.wustl.edu	37	2	153519137	153519137	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	153519137	153519137	C	A	SNP	PRPF40A	ENST00000410080	human	ensembl	74_37	-1	known	missense	c.2302	p.D768Y	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom,prints_Antifreeze_1	-	no_errors	PRPF40A	HGNC	ENSG00000196504				16	0	0	21	6	22.2222
GALNT13	0	genome.wustl.edu	37	2	155158056	155158056	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	155158056	155158056	A	C	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	missense	c.1110	p.E370D	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				193	0	0	124	56	31.1111
KCNJ3	0	genome.wustl.edu	37	2	155555618	155555618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	155555618	155555618	G	A	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	missense	c.331	p.D111N	1.000	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989				100	0	0	51	23	31.0811
NBAS	0	genome.wustl.edu	37	2	15601451	15601451	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	15601451	15601451	A	G	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.2213	p.V738A	1.000	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				95	0	0	51	24	32
GPD2	0	genome.wustl.edu	37	2	157427707	157427707	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	157427707	157427707	G	A	SNP	GPD2	ENST00000310454	human	ensembl	74_37	+1	known	missense	c.1670	p.R557H	1.000	NULL	pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_G3P_DH_FAD-dep	-	no_errors	GPD2	HGNC	ENSG00000115159				153	0	0	90	53	37.0629
DDX1	0	genome.wustl.edu	37	2	15768807	15768807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	15768807	15768807	G	A	SNP	DDX1	ENST00000233084	human	ensembl	74_37	+1	known	missense	c.1805	p.R602Q	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785				51	0	0	24	15	38.4615
GALNT5	0	genome.wustl.edu	37	2	158115201	158115201	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	158115201	158115201	C	T	SNP	GALNT5	ENST00000259056	human	ensembl	74_37	+1	known	missense	c.607	p.P203S	0.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542				74	0	0	50	16	24.2424
GALNT5	0	genome.wustl.edu	37	2	158142577	158142577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	158142577	158142577	C	T	SNP	GALNT5	ENST00000259056	human	ensembl	74_37	+1	known	missense	c.1672	p.R558W	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT5	HGNC	ENSG00000136542				48	0	0	34	19	35.8491
PKP4	0	genome.wustl.edu	37	2	159481805	159481805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	159481805	159481805	G	A	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	missense	c.1019	p.R340H	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283				115	0	0	62	30	32.6087
TANC1	0	genome.wustl.edu	37	2	160019918	160019918	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160019918	160019918	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	silent	c.807	p.C269	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				118	0	0	70	27	27.8351
BAZ2B	0	genome.wustl.edu	37	2	160193585	160193585	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160193585	160193585	A	C	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.5664	p.I1888M	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				159	0	0	99	43	30.2817
BAZ2B	0	genome.wustl.edu	37	2	160303396	160303396	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160303396	160303396	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.593	p.G198E	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				102	0	0	91	38	29.4574
BAZ2B	0	genome.wustl.edu	37	2	160304759	160304759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160304759	160304759	C	T	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.496	p.E166K	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636				82	0	0	64	29	31.1828
BAZ2B	0	genome.wustl.edu	37	2	160318921	160318921	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160318921	160318921	C	T	SNP	BAZ2B	ENST00000483316	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636				65	0	0	37	14	27.451
LY75	0	genome.wustl.edu	37	2	160731976	160731976	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160731976	160731976	G	A	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	silent	c.1953	p.P651	0.034	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				145	0	0	83	32	27.8261
ITGB6	0	genome.wustl.edu	37	2	160994243	160994243	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	160994243	160994243	G	A	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	silent	c.1362	p.C454	0.080	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				61	0	0	46	27	36.9863
ITGB6	0	genome.wustl.edu	37	2	161052788	161052788	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	161052788	161052788	C	A	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	missense	c.285	p.Q95H	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221				165	0	0	132	73	35.6098
SLC4A10	0	genome.wustl.edu	37	2	162762303	162762303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	162762303	162762303	A	G	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.1903	p.I635V	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				71	0	0	48	29	37.6623
SLC4A10	0	genome.wustl.edu	37	2	162804171	162804171	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	162804171	162804171	C	A	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	missense	c.2199	p.F733L	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				156	0	0	74	45	37.8151
SLC4A10	0	genome.wustl.edu	37	2	162805661	162805661	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	162805661	162805661	C	T	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	nonsense	c.2269	p.R757*	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				109	0	0	72	30	29.4118
GCG	0	genome.wustl.edu	37	2	163003923	163003923	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	163003923	163003923	T	C	SNP	GCG	ENST00000375497	human	ensembl	74_37	-1	known	missense	c.194	p.Y65C	1.000	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	-	no_errors	GCG	HGNC	ENSG00000115263				259	0	0	168	93	35.6322
FAP	0	genome.wustl.edu	37	2	163070503	163070503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	163070503	163070503	G	A	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.947	p.S316L	0.966	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				202	0	0	187	30	13.8249
IFIH1	0	genome.wustl.edu	37	2	163134117	163134117	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	163134117	163134117	G	A	SNP	IFIH1	ENST00000263642	human	ensembl	74_37	-1	known	nonsense	c.1852	p.R618*	1.000	superfamily_P-loop_NTPase	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267				57	0	0	36	31	46.2687
IFIH1	0	genome.wustl.edu	37	2	163174673	163174673	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	163174673	163174673	T	C	SNP	IFIH1	ENST00000263642	human	ensembl	74_37	-1	known	missense	c.145	p.T49A	0.001	NULL	pfam_RIG-I_C-RD,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_CARD,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,superfamily_ARM-type_fold,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	IFIH1	HGNC	ENSG00000115267				114	0	0	38	39	50.6494
KCNH7	0	genome.wustl.edu	37	2	163241450	163241450	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	163241450	163241450	C	T	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	splice_site	c.2711-1	e13-1	0.997	-	-	-	no_errors	KCNH7	HGNC	ENSG00000184611				94	0	0	68	26	27.6596
PXDN	0	genome.wustl.edu	37	2	1647288	1647288	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	1647288	1647288	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.3804	p.T1268	0.492	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				143	0	0	53	38	41.7582
PXDN	0	genome.wustl.edu	37	2	1652186	1652186	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	1652186	1652186	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.3366	p.F1122	0.995	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				89	0	0	20	13	39.3939
GRB14	0	genome.wustl.edu	37	2	165378577	165378577	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165378577	165378577	C	T	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	silent	c.729	p.A243	0.957	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				75	0	0	75	30	28.5714
GRB14	0	genome.wustl.edu	37	2	165477817	165477817	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165477817	165477817	C	A	SNP	GRB14	ENST00000263915	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	0.975	NULL	pfam_BPS-dom,pfam_SH2,pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,smart_SH2,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SH2,prints_SH2	-	no_errors	GRB14	HGNC	ENSG00000115290				16	0	0	14	6	30
COBLL1	0	genome.wustl.edu	37	2	165552047	165552047	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165552047	165552047	C	A	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	missense	c.2170	p.D724Y	0.453	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				323	0	0	218	32	12.8
COBLL1	0	genome.wustl.edu	37	2	165552116	165552116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165552116	165552116	C	T	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	missense	c.2101	p.A701T	0.000	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				395	0	0	245	104	29.7994
COBLL1	0	genome.wustl.edu	37	2	165584506	165584506	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165584506	165584506	C	A	SNP	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	nonsense	c.793	p.E265*	1.000	pfam_Cordon-bleu_ubiquitin_domain	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				95	0	0	63	33	34.375
SLC38A11	0	genome.wustl.edu	37	2	165772419	165772419	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165772419	165772419	A	G	SNP	SLC38A11	ENST00000409149	human	ensembl	74_37	-1	known	missense	c.514	p.S172P	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A11	HGNC	ENSG00000169507				379	0	0	227	108	32.2388
SCN3A	0	genome.wustl.edu	37	2	165947775	165947775	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165947775	165947775	G	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	nonsense	c.4888	p.R1630*	0.995	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				177	1	0.561798	103	50	32.6797
SCN3A	0	genome.wustl.edu	37	2	165996041	165996041	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	165996041	165996041	G	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	silent	c.2097	p.S699	0.742	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				88	0	0	75	30	28.5714
SCN3A	0	genome.wustl.edu	37	2	166021012	166021012	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166021012	166021012	G	T	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	silent	c.492	p.I164	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				50	0	0	42	14	25
SCN2A	0	genome.wustl.edu	37	2	166152574	166152574	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166152574	166152574	C	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.241	p.L81M	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				84	0	0	57	16	21.9178
SCN2A	0	genome.wustl.edu	37	2	166198827	166198827	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166198827	166198827	G	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.2410	p.A804T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				70	0	0	48	36	42.8571
SCN2A	0	genome.wustl.edu	37	2	166223836	166223836	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166223836	166223836	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	silent	c.3630	p.F1210	0.995	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				67	0	0	50	21	29.5775
SCN2A	0	genome.wustl.edu	37	2	166245742	166245742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166245742	166245742	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.5426	p.A1809V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				195	0	0	115	57	33.1395
CSRNP3	0	genome.wustl.edu	37	2	166535407	166535407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166535407	166535407	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.902	p.S301F	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				111	0	0	80	8	9.09091
CSRNP3	0	genome.wustl.edu	37	2	166535733	166535733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166535733	166535733	C	T	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1228	p.L410F	1.000	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662				132	0	0	90	43	32.3308
TTC21B	0	genome.wustl.edu	37	2	166767940	166767940	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166767940	166767940	T	C	SNP	TTC21B	ENST00000243344	human	ensembl	74_37	-1	known	silent	c.2358	p.G786	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21B	HGNC	ENSG00000123607				74	0	0	67	28	29.4737
SCN1A	0	genome.wustl.edu	37	2	166852557	166852557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166852557	166852557	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4547	p.S1516L	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				62	0	0	68	16	19.0476
SCN1A	0	genome.wustl.edu	37	2	166870258	166870258	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166870258	166870258	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.3701	p.A1234D	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				91	0	0	67	17	20.2381
SCN1A	0	genome.wustl.edu	37	2	166900452	166900452	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	166900452	166900452	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.1770	p.F590	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				149	0	0	89	32	26.4463
SCN9A	0	genome.wustl.edu	37	2	167060699	167060699	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167060699	167060699	T	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.4543	p.N1515Y	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				68	0	0	53	22	29.3333
LOC101929680	0	genome.wustl.edu	37	2	167108403	167108403	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167108403	167108403	G	T	SNP	LOC101929680	ENST00000447809	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.272	-	-	-	no_errors	AC010127.3	Clone_based_vega_gene	ENSG00000236107				41	0	0	15	8	34.7826
SCN9A	0	genome.wustl.edu	37	2	167141144	167141144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167141144	167141144	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.1796	p.R599H	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				99	0	0	58	25	30.1205
SCN9A	0	genome.wustl.edu	37	2	167141266	167141266	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167141266	167141266	G	T	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.1674	p.F558L	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				41	0	0	36	16	30.7692
SCN9A	0	genome.wustl.edu	37	2	167162341	167162341	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167162341	167162341	T	C	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.560	p.D187G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				103	0	0	66	33	33.3333
SCN9A	0	genome.wustl.edu	37	2	167163559	167163559	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167163559	167163559	T	G	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.284	p.K95T	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				23	0	0	24	17	41.4634
SCN7A	0	genome.wustl.edu	37	2	167262951	167262951	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167262951	167262951	T	C	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	silent	c.4188	p.V1396	0.998	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				119	0	0	95	42	30.6569
SCN7A	0	genome.wustl.edu	37	2	167304120	167304120	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	167304120	167304120	A	G	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	splice_site	c.1387+2	e10+2	0.989	-	-	-	no_errors	SCN7A	HGNC	ENSG00000136546				50	0	0	44	16	26.6667
FAM49A	0	genome.wustl.edu	37	2	16745275	16745275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	16745275	16745275	C	T	SNP	FAM49A	ENST00000355549	human	ensembl	74_37	-1	known	missense	c.280	p.E94K	1.000	pfam_DUF1394	pfam_DUF1394	-	no_errors	FAM49A	HGNC	ENSG00000197872				53	0	0	40	17	29.8246
PXDN	0	genome.wustl.edu	37	2	1680706	1680706	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	1680706	1680706	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	nonsense	c.841	p.R281*	0.981	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				29	0	0	13	4	23.5294
XIRP2	0	genome.wustl.edu	37	2	168098327	168098327	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168098327	168098327	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.1083	p.S361	0.935	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				122	0	0	74	31	29.5238
XIRP2	0	genome.wustl.edu	37	2	168100110	168100110	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168100110	168100110	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.2208	p.F736	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				71	0	0	58	32	35.5556
XIRP2	0	genome.wustl.edu	37	2	168100781	168100781	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168100781	168100781	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.2879	p.F960C	0.057	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				61	0	0	53	27	33.75
XIRP2	0	genome.wustl.edu	37	2	168101110	168101110	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168101110	168101110	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3208	p.F1070V	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				29	0	0	26	10	27.7778
XIRP2	0	genome.wustl.edu	37	2	168101932	168101932	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168101932	168101932	C	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.4030	p.H1344N	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				99	0	0	58	34	36.9565
XIRP2	0	genome.wustl.edu	37	2	168103654	168103654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168103654	168103654	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.5752	p.L1918F	0.843	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				66	0	0	46	21	31.3433
XIRP2	0	genome.wustl.edu	37	2	168103786	168103786	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168103786	168103786	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.5884	p.T1962A	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				75	0	0	43	32	42.6667
XIRP2	0	genome.wustl.edu	37	2	168105219	168105219	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168105219	168105219	T	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.7317	p.D2439E	0.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				131	0	0	97	35	26.5152
XIRP2	0	genome.wustl.edu	37	2	168105268	168105268	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	168105268	168105268	A	G	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.7366	p.K2456E	0.005	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				114	0	0	87	38	30.4
SPC25	0	genome.wustl.edu	37	2	169732594	169732594	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	169732594	169732594	G	A	SNP	SPC25	ENST00000282074	human	ensembl	74_37	-1	known	nonsense	c.439	p.R147*	1.000	pfam_Spc25	pfam_Spc25	-	no_errors	SPC25	HGNC	ENSG00000152253				26	0	0	19	6	24
ABCB11	0	genome.wustl.edu	37	2	169814479	169814479	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	169814479	169814479	G	T	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.2338	p.L780I	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				34	0	0	24	11	31.4286
ABCB11	0	genome.wustl.edu	37	2	169869801	169869801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	169869801	169869801	T	C	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	missense	c.370	p.T124A	0.988	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734				257	0	0	151	84	35.7447
LRP2	0	genome.wustl.edu	37	2	170011043	170011043	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	170011043	170011043	G	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.12222	p.F4074L	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				101	0	0	62	33	34.7368
LRP2	0	genome.wustl.edu	37	2	170031797	170031797	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	170031797	170031797	G	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.10674	p.F3558L	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				99	0	0	46	35	43.2099
LRP2	0	genome.wustl.edu	37	2	170129474	170129474	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	170129474	170129474	G	A	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	silent	c.2079	p.F693	0.626	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				335	1	0.297619	196	88	30.9859
KLHL23	0	genome.wustl.edu	37	2	170591738	170591738	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	170591738	170591738	G	T	SNP	KLHL23	ENST00000272797	human	ensembl	74_37	+1	known	nonsense	c.214	p.E72*	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160				120	0	0	66	29	30.5263
KLHL23	0	genome.wustl.edu	37	2	170591939	170591939	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	170591939	170591939	T	C	SNP	KLHL23	ENST00000272797	human	ensembl	74_37	+1	known	missense	c.415	p.C139R	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160				197	0	0	111	47	29.7468
MYO3B	0	genome.wustl.edu	37	2	171399458	171399458	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171399458	171399458	C	T	SNP	MYO3B	ENST00000334231	human	ensembl	74_37	+1	known	silent	c.3645	p.F1215	0.014	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3B	HGNC	ENSG00000071909				144	0	0	88	46	34.3284
SP5	0	genome.wustl.edu	37	2	171573683	171573683	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171573683	171573683	C	T	SNP	SP5	ENST00000375281	human	ensembl	74_37	+1	known	silent	c.966	p.G322	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				20	0	0	13	3	18.75
SP5	0	genome.wustl.edu	37	2	171573901	171573901	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171573901	171573901	C	T	SNP	SP5	ENST00000375281	human	ensembl	74_37	+1	known	missense	c.1184	p.A395V	0.899	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP5	HGNC	ENSG00000204335				35	0	0	21	9	30
GAD1	0	genome.wustl.edu	37	2	171686016	171686016	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171686016	171686016	G	T	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	missense	c.177	p.E59D	1.000	NULL	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				144	0	0	78	32	29.0909
GAD1	0	genome.wustl.edu	37	2	171716257	171716257	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171716257	171716257	T	C	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	silent	c.1650	p.G550	0.996	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683				53	0	0	26	13	33.3333
GORASP2	0	genome.wustl.edu	37	2	171811194	171811194	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171811194	171811194	C	T	SNP	GORASP2	ENST00000452526	human	ensembl	74_37	+1	known	nonsense	c.637	p.R213*	1.000	pfam_GRASP55/65_PDZ	pfam_GRASP55/65_PDZ,superfamily_PDZ	-	no_errors	GORASP2	HGNC	ENSG00000115806				63	0	0	42	21	33.3333
TLK1	0	genome.wustl.edu	37	2	171863007	171863007	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	171863007	171863007	A	C	SNP	TLK1	ENST00000431350	human	ensembl	74_37	-1	known	missense	c.1745	p.I582S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK1	HGNC	ENSG00000198586				112	0	0	89	51	36.4286
PDK1	0	genome.wustl.edu	37	2	173423516	173423516	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	173423516	173423516	G	T	SNP	PDK1	ENST00000282077	human	ensembl	74_37	+1	known	nonsense	c.277	p.E93*	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK1	HGNC	ENSG00000152256				99	0	0	58	40	40.8163
ZAK	0	genome.wustl.edu	37	2	174034590	174034590	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	174034590	174034590	C	A	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	missense	c.217	p.L73I	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436				121	0	0	79	43	35.2459
MLK7-AS1	0	genome.wustl.edu	37	2	174062850	174062850	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	174062850	174062850	C	T	SNP	MLK7-AS1	ENST00000423106	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MLK7-AS1	HGNC	ENSG00000238133				112	0	0	100	41	29.078
CDCA7	0	genome.wustl.edu	37	2	174228618	174228618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	174228618	174228618	G	A	SNP	CDCA7	ENST00000306721	human	ensembl	74_37	+1	known	missense	c.694	p.D232N	0.000	NULL	pfam_Znf-4CXXC_R1	-	no_errors	CDCA7	HGNC	ENSG00000144354				260	0	0	113	83	42.3469
CIR1	0	genome.wustl.edu	37	2	175243671	175243671	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	175243671	175243671	G	A	SNP	CIR1	ENST00000342016	human	ensembl	74_37	-1	known	missense	c.464	p.S155L	1.000	NULL	pfam_CIR_N_dom,superfamily_Znf_CCHC	-	no_errors	CIR1	HGNC	ENSG00000138433				149	1	0.666667	94	49	34.2657
GPR155	0	genome.wustl.edu	37	2	175333750	175333750	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	175333750	175333750	T	C	SNP	GPR155	ENST00000295500	human	ensembl	74_37	-1	known	missense	c.1072	p.M358V	1.000	pfam_Auxin_eff	pfam_Auxin_eff,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	GPR155	HGNC	ENSG00000163328				139	0	0	88	40	31.25
WIPF1	0	genome.wustl.edu	37	2	175431871	175431871	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	175431871	175431871	A	C	SNP	WIPF1	ENST00000272746	human	ensembl	74_37	-1	known	missense	c.1383	p.D461E	1.000	NULL	smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WIPF1	HGNC	ENSG00000115935				105	0	0	55	26	32.0988
CHRNA1	0	genome.wustl.edu	37	2	175618334	175618334	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	175618334	175618334	G	A	SNP	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	silent	c.750	p.F250	0.999	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435				169	0	0	88	55	38.4615
CHN1	0	genome.wustl.edu	37	2	175676246	175676246	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	175676246	175676246	G	A	SNP	CHN1	ENST00000409900	human	ensembl	74_37	-1	known	silent	c.957	p.F319	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SH2,superfamily_Rho_GTPase_activation_prot,smart_SH2,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pirsf_N-chimaerin,pfscan_SH2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_DAG/PE-bd	-	no_errors	CHN1	HGNC	ENSG00000128656				29	0	0	18	8	30.7692
HOXD13	0	genome.wustl.edu	37	2	176959337	176959337	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	176959337	176959337	A	G	SNP	HOXD13	ENST00000392539	human	ensembl	74_37	+1	putative	missense	c.911	p.D304G	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXD13	HGNC	ENSG00000128714				130	0	0	43	25	36.7647
HOXD10	0	genome.wustl.edu	37	2	176973620	176973620	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	176973620	176973620	C	T	SNP	HOXD10	ENST00000490088	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.797	-	-	-	no_errors	HOXD10	HGNC	ENSG00000128710				93	0	0	41	21	33.871
HOXD11	0	genome.wustl.edu	37	2	176973735	176973735	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	176973735	176973735	G	A	SNP	HOXD11	ENST00000249504	human	ensembl	74_37	+1	known	silent	c.882	p.E294	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713				145	1	0.684932	93	43	31.6176
HNRNPA3	0	genome.wustl.edu	37	2	178081278	178081278	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178081278	178081278	G	A	SNP	HNRNPA3	ENST00000392524	human	ensembl	74_37	+1	known	missense	c.601	p.A201T	1.000	pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA3	HGNC	ENSG00000170144				121	0	0	92	45	32.8467
TTC30B	0	genome.wustl.edu	37	2	178416077	178416077	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178416077	178416077	T	G	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.1415	p.E472A	1.000	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				287	0	0	196	59	23.1373
TTC30B	0	genome.wustl.edu	37	2	178416157	178416157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178416157	178416157	C	A	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.1335	p.K445N	1.000	smart_TPR_repeat	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				647	0	0	466	97	17.2291
TTC30B	0	genome.wustl.edu	37	2	178416244	178416244	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178416244	178416244	A	G	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	silent	c.1248	p.Y416	0.999	NULL	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				370	0	0	239	76	24.127
PDE11A	0	genome.wustl.edu	37	2	178879182	178879182	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178879182	178879182	T	C	SNP	PDE11A	ENST00000286063	human	ensembl	74_37	-1	known	silent	c.918	p.R306	0.989	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				78	0	0	29	17	36.9565
PDE11A	0	genome.wustl.edu	37	2	178969129	178969129	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	178969129	178969129	T	G	SNP	PDE11A	ENST00000358450	human	ensembl	74_37	-1	known	missense	c.62	p.K21T	0.997	smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE11A	HGNC	ENSG00000128655				142	0	0	81	41	33.6066
OSBPL6	0	genome.wustl.edu	37	2	179193050	179193050	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179193050	179193050	A	C	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.200	p.K67T	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				121	0	0	80	42	34.4262
OSBPL6	0	genome.wustl.edu	37	2	179197688	179197688	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179197688	179197688	G	T	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.514	p.D172Y	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				139	0	0	85	55	39.2857
OSBPL6	0	genome.wustl.edu	37	2	179236941	179236941	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179236941	179236941	T	G	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.1388	p.I463S	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				80	0	0	45	29	39.1892
OSBPL6	0	genome.wustl.edu	37	2	179260240	179260240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179260240	179260240	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.2771	p.R924Q	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				76	0	0	50	31	38.2716
SMC6	0	genome.wustl.edu	37	2	17927099	17927099	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	17927099	17927099	T	C	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.115	p.T39A	0.999	NULL	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				37	0	0	35	11	23.913
TTN	0	genome.wustl.edu	37	2	179393423	179393423	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179393423	179393423	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.99351	p.I33117	0.001	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				31	0	0	18	11	37.931
TTN	0	genome.wustl.edu	37	2	179398239	179398239	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179398239	179398239	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.95399	p.L31800*	0.990	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				102	0	0	40	17	29.8246
TTN	0	genome.wustl.edu	37	2	179418747	179418747	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179418747	179418747	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.81387	p.G27129	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				174	0	0	102	31	23.3083
TTN	0	genome.wustl.edu	37	2	179427058	179427058	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179427058	179427058	A	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.76097	p.F25366S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				100	0	0	58	31	34.8315
TTN	0	genome.wustl.edu	37	2	179431219	179431219	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179431219	179431219	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.71936	p.R23979Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				203	0	0	140	54	27.8351
TTN	0	genome.wustl.edu	37	2	179433949	179433949	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179433949	179433949	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.69206	p.I23069S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				310	0	0	205	92	30.9764
TTN	0	genome.wustl.edu	37	2	179438397	179438397	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179438397	179438397	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.64758	p.K21586N	0.906	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				325	0	0	171	86	33.463
TTN	0	genome.wustl.edu	37	2	179438979	179438979	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179438979	179438979	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.64176	p.I21392	0.596	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	51	19	27.1429
TTN	0	genome.wustl.edu	37	2	179442082	179442082	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179442082	179442082	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.61276	p.T20426A	0.183	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				78	0	0	51	19	27.1429
TTN	0	genome.wustl.edu	37	2	179446661	179446661	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179446661	179446661	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.58731	p.S19577	0.976	superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				96	0	0	55	24	30.3797
TTN	0	genome.wustl.edu	37	2	179449185	179449185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179449185	179449185	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.57389	p.R19130H	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				88	0	0	62	25	28.7356
TTN	0	genome.wustl.edu	37	2	179469823	179469823	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179469823	179469823	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.46377	p.K15459N	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				186	0	0	86	43	33.3333
TTN	0	genome.wustl.edu	37	2	179485561	179485561	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179485561	179485561	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.38072	p.D12691G	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				169	0	0	127	61	32.4468
TTN	0	genome.wustl.edu	37	2	179485594	179485594	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179485594	179485594	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.38039	p.F12680C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				124	0	0	109	43	28.2895
TTN	0	genome.wustl.edu	37	2	179495649	179495649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179495649	179495649	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.36332	p.R12111Q	0.998	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				81	0	0	56	20	26.3158
TTN	0	genome.wustl.edu	37	2	179496966	179496966	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179496966	179496966	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.35951	p.S11984L	0.996	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				17	0	0	21	5	19.2308
TTN	0	genome.wustl.edu	37	2	179528389	179528389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179528389	179528389	G	A	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	missense	c.36497	p.A12166V	0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				322	0	0	222	102	31.4815
TTN	0	genome.wustl.edu	37	2	179532032	179532032	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179532032	179532032	T	C	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	missense	c.35728	p.R11910G	0.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				16	0	0	12	5	29.4118
TTN	0	genome.wustl.edu	37	2	179547583	179547583	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179547583	179547583	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.29203	p.E9735*	0.990	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				44	0	0	44	12	21.4286
TTN	0	genome.wustl.edu	37	2	179549099	179549099	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179549099	179549099	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.28948	p.L9650I	0.999	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				23	0	0	32	12	27.2727
TTN	0	genome.wustl.edu	37	2	179567308	179567308	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179567308	179567308	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.26574	p.S8858	0.997	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				179	0	0	99	52	34.4371
TTN	0	genome.wustl.edu	37	2	179569059	179569059	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179569059	179569059	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.26306	p.S8769Y	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				200	0	0	97	62	38.9937
TTN	0	genome.wustl.edu	37	2	179575894	179575894	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179575894	179575894	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.24337	p.T8113A	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				222	0	0	115	52	31.1377
TTN	0	genome.wustl.edu	37	2	179579257	179579257	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179579257	179579257	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.22512	p.V7504	0.001	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_V-set_subgr,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				37	0	0	30	17	36.1702
TTN	0	genome.wustl.edu	37	2	179581897	179581897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179581897	179581897	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.21832	p.D7278N	0.999	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				62	0	0	40	18	31.0345
TTN	0	genome.wustl.edu	37	2	179589096	179589096	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179589096	179589096	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.17274	p.I5758	0.991	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				72	0	0	45	7	13.4615
ENSG00000267784	0	genome.wustl.edu	37	2	179591751	179591751	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179591751	179591751	G	T	SNP	ENSG00000267784	ENST00000590024	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	RP11-171I2.1	Clone_based_vega_gene	ENSG00000267784				67	0	0	34	20	37.037
TTN	0	genome.wustl.edu	37	2	179593390	179593390	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179593390	179593390	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.15531	p.D5177E	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				58	0	0	30	21	41.1765
TTN	0	genome.wustl.edu	37	2	179596150	179596150	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179596150	179596150	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.13611	p.E4537	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				201	0	0	122	75	38.0711
TTN	0	genome.wustl.edu	37	2	179605416	179605416	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179605416	179605416	C	T	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12031	p.E4011K	0.986	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				129	0	0	58	38	39.5833
TTN	0	genome.wustl.edu	37	2	179606118	179606118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179606118	179606118	G	A	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11329	p.R3777C	0.152	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				237	0	0	122	81	39.9015
TTN	0	genome.wustl.edu	37	2	179606407	179606407	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179606407	179606407	A	C	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11040	p.I3680M	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				104	0	0	71	38	34.8624
TTN	0	genome.wustl.edu	37	2	179610839	179610839	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179610839	179610839	T	C	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.16288	p.S5430G	0.770	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				176	0	0	135	44	24.581
TTN	0	genome.wustl.edu	37	2	179613827	179613827	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179613827	179613827	T	G	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.13300	p.K4434Q	0.024	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				65	0	0	58	36	38.2979
TTN	0	genome.wustl.edu	37	2	179632515	179632515	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179632515	179632515	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.9442	p.R3148C	1.000	superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				168	0	0	110	51	31.677
TTN	0	genome.wustl.edu	37	2	179638812	179638812	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179638812	179638812	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.7083	p.G2361	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				145	1	0.684932	81	31	27.6786
TTN	0	genome.wustl.edu	37	2	179643841	179643841	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179643841	179643841	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3968	p.A1323D	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				47	0	0	40	14	25.9259
TTN	0	genome.wustl.edu	37	2	179647545	179647545	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179647545	179647545	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.3088	p.L1030	0.998	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				70	0	0	39	22	36.0656
CCDC141	0	genome.wustl.edu	37	2	179701651	179701651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179701651	179701651	A	G	SNP	CCDC141	ENST00000420890	human	ensembl	74_37	-1	known	missense	c.4295	p.V1432A	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Spectrin_repeat,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CCDC141	HGNC	ENSG00000163492				69	0	0	60	21	25.9259
ZNF385B	0	genome.wustl.edu	37	2	180348096	180348096	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	180348096	180348096	C	T	SNP	ZNF385B	ENST00000410066	human	ensembl	74_37	-1	known	silent	c.573	p.T191	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331				93	0	0	55	21	27.6316
CWC22	0	genome.wustl.edu	37	2	180810175	180810175	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	180810175	180810175	T	C	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.2408	p.D803G	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				201	0	0	153	70	31.3901
CWC22	0	genome.wustl.edu	37	2	180846683	180846683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	180846683	180846683	G	A	SNP	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	missense	c.248	p.T83M	0.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510				10	0	0	11	3	21.4286
ZNF804A	0	genome.wustl.edu	37	2	185801356	185801356	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	185801356	185801356	A	G	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1233	p.I411M	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				127	0	0	104	40	27.7778
FSIP2	0	genome.wustl.edu	37	2	186672851	186672851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	186672851	186672851	A	G	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.19085	p.D6362G	0.999	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				48	0	0	43	20	31.746
RDH14	0	genome.wustl.edu	37	2	18737024	18737024	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	18737024	18737024	G	A	SNP	RDH14	ENST00000381249	human	ensembl	74_37	-1	known	silent	c.444	p.C148	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH14	HGNC	ENSG00000240857				182	0	0	124	51	29.1429
FAM171B	0	genome.wustl.edu	37	2	187626873	187626873	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	187626873	187626873	G	A	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	missense	c.1804	p.E602K	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				126	0	0	46	37	44.5783
ZSWIM2	0	genome.wustl.edu	37	2	187693422	187693422	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	187693422	187693422	A	G	SNP	ZSWIM2	ENST00000295131	human	ensembl	74_37	-1	known	silent	c.1191	p.N397	0.006	NULL	pfam_Znf_SWIM,pfam_Znf_ZZ,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Znf_ZZ	-	no_errors	ZSWIM2	HGNC	ENSG00000163012				43	0	0	40	14	25.9259
COL5A2	0	genome.wustl.edu	37	2	189899735	189899735	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	189899735	189899735	T	G	SNP	COL5A2	ENST00000374866	human	ensembl	74_37	-1	known	missense	c.4260	p.K1420N	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL5A2	HGNC	ENSG00000204262				129	0	0	86	38	30.6452
ANKAR	0	genome.wustl.edu	37	2	190602514	190602514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	190602514	190602514	G	A	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	missense	c.3529	p.E1177K	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				48	0	0	31	12	27.907
ANKAR	0	genome.wustl.edu	37	2	190611312	190611312	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	190611312	190611312	A	G	SNP	ANKAR	ENST00000313581	human	ensembl	74_37	+1	known	missense	c.4264	p.K1422E	0.881	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Armadillo,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Armadillo	-	no_errors	ANKAR	HGNC	ENSG00000151687				40	0	0	36	31	46.2687
ORMDL1	0	genome.wustl.edu	37	2	190647161	190647161	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	190647161	190647161	A	C	SNP	ORMDL1	ENST00000325795	human	ensembl	74_37	-1	known	missense	c.161	p.I54S	1.000	pfam_ORMDL,pirsf_ORMDL	pfam_ORMDL,pirsf_ORMDL	-	no_errors	ORMDL1	HGNC	ENSG00000128699				41	0	0	21	14	40
GLS	0	genome.wustl.edu	37	2	191759964	191759964	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	191759964	191759964	A	C	SNP	GLS	ENST00000320717	human	ensembl	74_37	+1	known	missense	c.473	p.K158T	1.000	NULL	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS	HGNC	ENSG00000115419				80	0	0	61	31	33.6957
GLS	0	genome.wustl.edu	37	2	191797590	191797590	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	191797590	191797590	G	T	SNP	GLS	ENST00000471443	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.975	-	-	-	no_errors	GLS	HGNC	ENSG00000115419				28	0	0	27	8	22.8571
MYO1B	0	genome.wustl.edu	37	2	192255065	192255065	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	192255065	192255065	C	T	SNP	MYO1B	ENST00000304164	human	ensembl	74_37	+1	known	missense	c.1829	p.A610V	0.896	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO1B	HGNC	ENSG00000128641				183	0	0	124	17	12.0567
SLC39A10	0	genome.wustl.edu	37	2	196544962	196544962	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	196544962	196544962	A	C	SNP	SLC39A10	ENST00000359634	human	ensembl	74_37	+1	known	missense	c.196	p.K66Q	1.000	NULL	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950				73	0	0	66	27	29.0323
DNAH7	0	genome.wustl.edu	37	2	196602633	196602633	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	196602633	196602633	G	T	SNP	DNAH7	ENST00000484183	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.005	-	-	-	no_errors	DNAH7	HGNC	ENSG00000118997				80	0	0	32	10	23.8095
DNAH7	0	genome.wustl.edu	37	2	196722258	196722258	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	196722258	196722258	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.8257	p.H2753N	1.000	superfamily_Signal_recog_particle_SRP9/14	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				100	0	0	91	6	6.18557
STK17B	0	genome.wustl.edu	37	2	197002222	197002222	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	197002222	197002222	G	A	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	silent	c.1068	p.F356	0.991	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				114	1	0.869565	86	36	29.5082
STK17B	0	genome.wustl.edu	37	2	197002332	197002332	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	197002332	197002332	A	G	SNP	STK17B	ENST00000263955	human	ensembl	74_37	-1	known	missense	c.958	p.S320P	0.669	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK17B	HGNC	ENSG00000081320				114	0	0	64	41	39.0476
HECW2	0	genome.wustl.edu	37	2	197105219	197105219	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	197105219	197105219	C	A	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	missense	c.3718	p.D1240Y	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411				94	0	0	70	39	35.7798
PGAP1	0	genome.wustl.edu	37	2	197729765	197729765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	197729765	197729765	C	T	SNP	PGAP1	ENST00000354764	human	ensembl	74_37	-1	known	missense	c.1807	p.V603I	0.003	NULL	pfam_PGAP1-like	-	no_errors	PGAP1	HGNC	ENSG00000197121				57	0	0	43	16	27.1186
ANKRD44	0	genome.wustl.edu	37	2	197986245	197986245	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	197986245	197986245	T	C	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	silent	c.642	p.G214	0.918	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				58	0	0	33	17	34
RFTN2	0	genome.wustl.edu	37	2	198511371	198511371	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	198511371	198511371	G	T	SNP	RFTN2	ENST00000295049	human	ensembl	74_37	-1	known	silent	c.159	p.V53	0.999	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944				54	0	0	33	10	23.2558
RFTN2	0	genome.wustl.edu	37	2	198540074	198540074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	198540074	198540074	C	T	SNP	RFTN2	ENST00000295049	human	ensembl	74_37	-1	known	missense	c.109	p.E37K	1.000	NULL	NULL	-	no_errors	RFTN2	HGNC	ENSG00000162944				126	0	0	102	44	30.137
C2orf69	0	genome.wustl.edu	37	2	200789803	200789803	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	200789803	200789803	A	G	SNP	C2orf69	ENST00000319974	human	ensembl	74_37	+1	known	missense	c.352	p.T118A	1.000	pfam_UPF0565	pfam_UPF0565	-	no_errors	C2orf69	HGNC	ENSG00000178074				33	0	0	20	18	47.3684
TYW5	0	genome.wustl.edu	37	2	200797994	200797994	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	200797994	200797994	G	T	SNP	TYW5	ENST00000354611	human	ensembl	74_37	-1	known	silent	c.744	p.I248	1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	TYW5	HGNC	ENSG00000162971				127	0	0	52	39	42.8571
WDR35	0	genome.wustl.edu	37	2	20135296	20135296	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	20135296	20135296	A	G	SNP	WDR35	ENST00000345530	human	ensembl	74_37	-1	known	missense	c.2516	p.L839S	1.000	pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965				63	0	0	49	28	36.3636
SGOL2	0	genome.wustl.edu	37	2	201436553	201436553	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	201436553	201436553	G	T	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	missense	c.1484	p.R495I	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				167	0	0	138	68	33.0097
AOX1	0	genome.wustl.edu	37	2	201467062	201467062	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	201467062	201467062	C	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	silent	c.492	p.F164	1.000	superfamily_2Fe-2S-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				108	0	0	60	26	30.2326
AOX1	0	genome.wustl.edu	37	2	201477409	201477409	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	201477409	201477409	C	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	silent	c.1341	p.V447	0.964	pfam_CO_DH_flav_C,superfamily_CO_DH_flav_C,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				133	1	0.746269	78	35	30.9735
FZD7	0	genome.wustl.edu	37	2	202900702	202900702	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	202900702	202900702	C	T	SNP	FZD7	ENST00000286201	human	ensembl	74_37	+1	known	silent	c.1332	p.F444	0.998	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD7	HGNC	ENSG00000155760				150	1	0.662252	61	32	34.4086
BMPR2	0	genome.wustl.edu	37	2	203329536	203329536	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	203329536	203329536	G	A	SNP	BMPR2	ENST00000374580	human	ensembl	74_37	+1	known	silent	c.81	p.S27	0.952	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR2	HGNC	ENSG00000204217				91	0	0	69	28	28.866
WDR12	0	genome.wustl.edu	37	2	203749137	203749137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	203749137	203749137	C	T	SNP	WDR12	ENST00000261015	human	ensembl	74_37	-1	known	missense	c.863	p.G288D	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_NLE,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR12	HGNC	ENSG00000138442				126	0	0	69	30	30.303
NBEAL1	0	genome.wustl.edu	37	2	204034508	204034508	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	204034508	204034508	T	G	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.5949	p.H1983Q	1.000	superfamily_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				85	0	0	68	27	28.4211
NBEAL1	0	genome.wustl.edu	37	2	204073897	204073897	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	204073897	204073897	T	G	SNP	NBEAL1	ENST00000449802	human	ensembl	74_37	+1	known	missense	c.7550	p.I2517S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL1	HGNC	ENSG00000144426				116	0	0	65	40	38.0952
RAPH1	0	genome.wustl.edu	37	2	204305381	204305381	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	204305381	204305381	C	T	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	silent	c.2688	p.Q896	1.000	NULL	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				142	0	0	72	35	32.7103
PARD3B	0	genome.wustl.edu	37	2	205978262	205978262	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	205978262	205978262	G	T	SNP	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	missense	c.641	p.G214V	1.000	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				55	0	0	35	20	36.3636
INO80D	0	genome.wustl.edu	37	2	206870101	206870101	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	206870101	206870101	A	G	SNP	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	missense	c.2075	p.V692A	1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				166	0	0	84	35	29.4118
EEF1B2	0	genome.wustl.edu	37	2	207026796	207026796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	207026796	207026796	G	A	SNP	EEF1B2	ENST00000236957	human	ensembl	74_37	+1	known	missense	c.365	p.R122H	1.000	pfam_EF-1_beta_acid_region_euk	pfam_Transl_elong_fac_EF1B_bsu/dsu,pfam_EF-1_beta_acid_region_euk,superfamily_Transl_elong_fac_EF1B_bsu/dsu,superfamily_Glutathione-S-Trfase_C-like,smart_Transl_elong_fac_EF1B_bsu/dsu	-	no_errors	EEF1B2	HGNC	ENSG00000114942				183	0	0	143	33	18.75
GPR1	0	genome.wustl.edu	37	2	207040930	207040930	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	207040930	207040930	G	T	SNP	GPR1	ENST00000407325	human	ensembl	74_37	-1	known	missense	c.1042	p.L348M	0.001	prints_GPR1_orph_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR1_orph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_ATII_rcpt	-	no_errors	GPR1	HGNC	ENSG00000183671				70	0	0	39	17	30.3571
ADAM23	0	genome.wustl.edu	37	2	207482393	207482393	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	207482393	207482393	C	A	SNP	ADAM23	ENST00000374416	human	ensembl	74_37	+1	known	missense	c.2450	p.S817Y	0.984	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				27	0	0	16	13	44.8276
DYTN	0	genome.wustl.edu	37	2	207527726	207527726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	207527726	207527726	C	T	SNP	DYTN	ENST00000452335	human	ensembl	74_37	-1	known	missense	c.1534	p.A512T	0.000	NULL	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125				175	0	0	104	54	34.1772
CREB1	0	genome.wustl.edu	37	2	208442362	208442362	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	208442362	208442362	C	T	SNP	CREB1	ENST00000432329	human	ensembl	74_37	+1	known	silent	c.864	p.V288	0.877	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_CREB	pfam_Coactivator_CBP_pKID,pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_Coactivator_CBP_pKID,pfscan_bZIP,prints_Leuzip_CREB	-	no_errors	CREB1	HGNC	ENSG00000118260				60	0	0	40	11	21.5686
METTL21A	0	genome.wustl.edu	37	2	208478021	208478021	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	208478021	208478021	C	A	SNP	METTL21A	ENST00000406927	human	ensembl	74_37	-1	known	nonsense	c.406	p.E136*	1.000	pfam_Nicotinamide_N-MeTfrase-like,pfam_Ribosomal-L11_MeTrfase_PrmA	pfam_Nicotinamide_N-MeTfrase-like,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom	-	no_errors	METTL21A	HGNC	ENSG00000144401				158	0	0	87	53	37.8571
CRYGA	0	genome.wustl.edu	37	2	209025593	209025593	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	209025593	209025593	A	C	SNP	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	missense	c.460	p.Y154D	0.048	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582				222	0	0	130	63	32.6425
MAP2	0	genome.wustl.edu	37	2	210557748	210557748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	210557748	210557748	C	A	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.854	p.S285Y	1.000	NULL	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				87	0	0	52	26	33.3333
MAP2	0	genome.wustl.edu	37	2	210559824	210559824	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	210559824	210559824	C	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.2930	p.A977V	0.001	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				115	0	0	79	30	27.5229
KANSL1L	0	genome.wustl.edu	37	2	211018339	211018339	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	211018339	211018339	C	A	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.968	p.R323I	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				154	0	0	93	44	32.1168
KANSL1L	0	genome.wustl.edu	37	2	211018713	211018713	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	211018713	211018713	C	A	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.594	p.K198N	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				145	0	0	97	47	32.6389
CPS1	0	genome.wustl.edu	37	2	211466941	211466941	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	211466941	211466941	A	C	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1741	p.K581Q	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				75	0	0	47	21	30.8824
CPS1	0	genome.wustl.edu	37	2	211471539	211471539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	211471539	211471539	G	A	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.2084	p.R695H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				99	0	0	39	26	40
APOB	0	genome.wustl.edu	37	2	21225916	21225916	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21225916	21225916	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.12378	p.I4126	0.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				268	0	0	127	60	32.0856
APOB	0	genome.wustl.edu	37	2	21229095	21229095	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21229095	21229095	T	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.10645	p.N3549H	1.000	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				119	0	0	67	40	37.3832
APOB	0	genome.wustl.edu	37	2	21231795	21231795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21231795	21231795	C	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.7945	p.E2649K	0.990	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				215	0	0	166	75	31.1203
APOB	0	genome.wustl.edu	37	2	21233570	21233570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21233570	21233570	A	C	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.6170	p.F2057C	0.995	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				135	0	0	77	42	35.2941
APOB	0	genome.wustl.edu	37	2	21235442	21235442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21235442	21235442	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.4298	p.S1433L	0.972	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				81	0	0	52	29	35.8025
APOB	0	genome.wustl.edu	37	2	21238325	21238325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21238325	21238325	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.3425	p.S1142L	0.674	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				119	0	0	85	32	27.3504
APOB	0	genome.wustl.edu	37	2	21242777	21242777	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	21242777	21242777	G	T	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.2817	p.G939	1.000	pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				100	0	0	51	24	32
ERBB4	0	genome.wustl.edu	37	2	212812260	212812260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	212812260	212812260	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.316	p.R106C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				53	0	0	48	21	30.4348
ERBB4	0	genome.wustl.edu	37	2	212989563	212989563	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	212989563	212989563	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.148	p.R50C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				77	0	0	51	24	32
SPAG16	0	genome.wustl.edu	37	2	214181952	214181952	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	214181952	214181952	A	C	SNP	SPAG16	ENST00000331683	human	ensembl	74_37	+1	known	missense	c.408	p.L136F	0.029	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SPAG16	HGNC	ENSG00000144451				66	0	0	38	22	36.6667
ABCA12	0	genome.wustl.edu	37	2	215917230	215917230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	215917230	215917230	C	T	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	0.413	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				80	0	0	43	21	32.8125
FN1	0	genome.wustl.edu	37	2	216242982	216242982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	216242982	216242982	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.5626	p.A1876T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				54	0	0	33	15	31.25
FN1	0	genome.wustl.edu	37	2	216274830	216274830	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	216274830	216274830	G	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.1949	p.S650Y	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				34	0	0	21	9	30
MREG	0	genome.wustl.edu	37	2	216809618	216809618	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	216809618	216809618	C	A	SNP	MREG	ENST00000263268	human	ensembl	74_37	-1	known	nonsense	c.613	p.E205*	0.598	NULL	NULL	-	no_errors	MREG	HGNC	ENSG00000118242				59	0	0	31	20	39.2157
MREG	0	genome.wustl.edu	37	2	216809669	216809669	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	216809669	216809669	G	A	SNP	MREG	ENST00000263268	human	ensembl	74_37	-1	known	nonsense	c.562	p.R188*	0.683	NULL	NULL	-	no_errors	MREG	HGNC	ENSG00000118242				53	0	0	25	15	37.5
SMARCAL1	0	genome.wustl.edu	37	2	217279808	217279808	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	217279808	217279808	A	G	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	silent	c.381	p.A127	0.011	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				123	0	0	62	30	32.6087
TNS1	0	genome.wustl.edu	37	2	218700848	218700848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	218700848	218700848	A	G	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	missense	c.2719	p.S907P	0.994	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				119	0	0	50	25	33.3333
CXCR2	0	genome.wustl.edu	37	2	218999817	218999817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	218999817	218999817	C	T	SNP	CXCR2	ENST00000318507	human	ensembl	74_37	+1	known	missense	c.293	p.A98V	0.989	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR2,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871				212	0	0	86	52	37.6812
CXCR2	0	genome.wustl.edu	37	2	219000231	219000231	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219000231	219000231	G	A	SNP	CXCR2	ENST00000318507	human	ensembl	74_37	+1	known	missense	c.707	p.R236H	0.023	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR_1/2,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR2,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR2	HGNC	ENSG00000180871				347	0	0	190	115	37.7049
CTDSP1	0	genome.wustl.edu	37	2	219267801	219267801	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219267801	219267801	G	A	SNP	CTDSP1	ENST00000273062	human	ensembl	74_37	+1	known	missense	c.422	p.R141Q	1.000	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP1	HGNC	ENSG00000144579				107	0	0	37	24	39.3443
USP37	0	genome.wustl.edu	37	2	219321865	219321865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219321865	219321865	G	A	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.2663	p.S888L	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				35	0	0	24	15	38.4615
USP37	0	genome.wustl.edu	37	2	219341566	219341566	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219341566	219341566	T	G	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.2040	p.E680D	0.998	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				56	0	0	59	10	14.4928
ZNF142	0	genome.wustl.edu	37	2	219507616	219507616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219507616	219507616	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.3623	p.S1208L	1.000	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				173	1	0.574713	71	32	31.068
ZNF142	0	genome.wustl.edu	37	2	219509723	219509723	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219509723	219509723	G	A	SNP	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	missense	c.1516	p.R506W	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				108	0	0	55	24	30.3797
BCS1L	0	genome.wustl.edu	37	2	219526163	219526163	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219526163	219526163	C	T	SNP	BCS1L	ENST00000359273	human	ensembl	74_37	+1	known	nonsense	c.355	p.R119*	1.000	pfam_BCS1_N	pfam_BCS1_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	BCS1L	HGNC	ENSG00000074582				129	0	0	61	32	34.4086
STK36	0	genome.wustl.edu	37	2	219563571	219563571	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219563571	219563571	G	T	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	nonsense	c.3304	p.E1102*	0.956	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482				192	0	0	84	51	37.7778
TTLL4	0	genome.wustl.edu	37	2	219617583	219617583	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219617583	219617583	G	A	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.3074	p.R1025Q	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				189	0	0	84	56	40
WNT10A	0	genome.wustl.edu	37	2	219754759	219754759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219754759	219754759	G	A	SNP	WNT10A	ENST00000258411	human	ensembl	74_37	+1	known	missense	c.430	p.A144T	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10A	HGNC	ENSG00000135925				135	0	0	50	19	27.5362
CCDC108	0	genome.wustl.edu	37	2	219903158	219903158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	219903158	219903158	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	missense	c.296	p.A99V	0.002	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				89	0	0	46	19	29.2308
ATG9A	0	genome.wustl.edu	37	2	220087075	220087075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	220087075	220087075	G	A	SNP	ATG9A	ENST00000361242	human	ensembl	74_37	-1	known	missense	c.1946	p.A649V	1.000	NULL	pfam_Autophagy-rel_prot_9,superfamily_Cyt_c_oxidase_su3	-	no_errors	ATG9A	HGNC	ENSG00000198925				180	0	0	70	31	30.6931
PTPRN	0	genome.wustl.edu	37	2	220162693	220162693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	220162693	220162693	G	A	SNP	PTPRN	ENST00000295718	human	ensembl	74_37	-1	known	missense	c.1801	p.R601W	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN	HGNC	ENSG00000054356				75	0	0	26	10	27.7778
DNPEP	0	genome.wustl.edu	37	2	220238995	220238995	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	220238995	220238995	G	T	SNP	DNPEP	ENST00000490371	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	DNPEP	HGNC	ENSG00000123992				100	0	0	51	20	28.169
SLC4A3	0	genome.wustl.edu	37	2	220500178	220500178	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	220500178	220500178	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	silent	c.2013	p.V671	0.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				56	0	0	24	19	44.186
EPHA4	0	genome.wustl.edu	37	2	222308273	222308273	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	222308273	222308273	G	A	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	nonsense	c.1828	p.R610*	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				92	0	0	58	37	38.9474
EPHA4	0	genome.wustl.edu	37	2	222433473	222433473	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	222433473	222433473	C	A	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	nonsense	c.124	p.E42*	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				41	0	0	23	7	23.3333
PAX3	0	genome.wustl.edu	37	2	223096870	223096870	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	223096870	223096870	C	A	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.719	p.R240I	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				170	1	0.584795	99	65	39.6341
ACSL3	0	genome.wustl.edu	37	2	223783787	223783787	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	223783787	223783787	A	C	SNP	ACSL3	ENST00000357430	human	ensembl	74_37	+1	known	silent	c.672	p.I224	0.050	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL3	HGNC	ENSG00000123983				52	0	0	27	16	37.2093
ENSG00000234193	0	genome.wustl.edu	37	2	223784052	223784052	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	223784052	223784052	T	C	SNP	ENSG00000234193	ENST00000446709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC097461.4	Clone_based_vega_gene	ENSG00000234193				20	0	0	6	6	50
CUL3	0	genome.wustl.edu	37	2	225378310	225378310	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	225378310	225378310	G	A	SNP	CUL3	ENST00000264414	human	ensembl	74_37	-1	known	silent	c.585	p.L195	0.936	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL3	HGNC	ENSG00000036257				50	0	0	41	4	8.88889
NYAP2	0	genome.wustl.edu	37	2	226446931	226446931	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	226446931	226446931	C	T	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	silent	c.798	p.A266	0.019	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460				207	0	0	122	52	29.8851
IRS1	0	genome.wustl.edu	37	2	227661066	227661066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	227661066	227661066	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	missense	c.2389	p.R797C	0.999	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				329	0	0	138	54	28.125
COL4A4	0	genome.wustl.edu	37	2	227946898	227946898	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	227946898	227946898	C	T	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	silent	c.1629	p.K543	0.564	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				209	0	0	109	58	34.7305
COL4A4	0	genome.wustl.edu	37	2	227946900	227946900	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	227946900	227946900	T	G	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.1627	p.K543Q	0.674	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				205	0	0	109	56	33.9394
COL4A3	0	genome.wustl.edu	37	2	228163401	228163401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228163401	228163401	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.3755	p.A1252V	0.890	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031				88	0	0	53	27	33.75
COL4A3	0	genome.wustl.edu	37	2	228163523	228163523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228163523	228163523	C	T	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.3877	p.R1293C	0.749	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031				84	0	0	59	27	31.3953
SLC19A3	0	genome.wustl.edu	37	2	228563936	228563936	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228563936	228563936	C	T	SNP	SLC19A3	ENST00000258403	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.000	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A3	HGNC	ENSG00000135917				237	0	0	152	43	22.0513
DAW1	0	genome.wustl.edu	37	2	228769707	228769707	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228769707	228769707	G	A	SNP	DAW1	ENST00000309931	human	ensembl	74_37	+1	known	silent	c.711	p.G237	0.592	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DAW1	HGNC	ENSG00000123977				171	0	0	89	48	35.0365
SPHKAP	0	genome.wustl.edu	37	2	228886519	228886519	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228886519	228886519	T	C	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.605	p.D202G	1.000	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				145	0	0	97	30	23.622
SPHKAP	0	genome.wustl.edu	37	2	228886659	228886659	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	228886659	228886659	G	A	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	silent	c.465	p.C155	0.995	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				64	0	0	35	28	44.4444
DNER	0	genome.wustl.edu	37	2	230253102	230253102	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	230253102	230253102	G	A	SNP	DNER	ENST00000341772	human	ensembl	74_37	-1	known	silent	c.1734	p.C578	0.993	pfam_EGF_extracell,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DNER	HGNC	ENSG00000187957				201	1	0.49505	120	48	28.5714
SLC16A14	0	genome.wustl.edu	37	2	230910719	230910719	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	230910719	230910719	C	T	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	missense	c.1123	p.D375N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				99	0	0	72	25	25.7732
SLC16A14	0	genome.wustl.edu	37	2	230911332	230911332	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	230911332	230911332	G	A	SNP	SLC16A14	ENST00000295190	human	ensembl	74_37	-1	known	silent	c.510	p.F170	0.262	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A14	HGNC	ENSG00000163053				145	0	0	75	38	33.6283
SP110	0	genome.wustl.edu	37	2	231042332	231042332	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	231042332	231042332	G	A	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	silent	c.1512	p.V504	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				364	0	0	207	113	35.3125
SP110	0	genome.wustl.edu	37	2	231081618	231081618	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	231081618	231081618	C	T	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.25	p.E9K	0.001	pfam_Sp100	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				52	0	0	28	27	49.0909
SP140L	0	genome.wustl.edu	37	2	231249977	231249977	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	231249977	231249977	A	C	SNP	SP140L	ENST00000415673	human	ensembl	74_37	+1	known	missense	c.742	p.K248Q	0.000	NULL	pfam_Sp100,pfam_SAND_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom,pfscan_Bromodomain	-	no_errors	SP140L	HGNC	ENSG00000185404				102	0	0	48	28	36.8421
B3GNT7	0	genome.wustl.edu	37	2	232262514	232262514	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	232262514	232262514	T	C	SNP	B3GNT7	ENST00000287590	human	ensembl	74_37	+1	known	silent	c.84	p.S28	0.791	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966				128	1	0.775194	62	36	36.7347
NCL	0	genome.wustl.edu	37	2	232320835	232320835	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	232320835	232320835	G	T	SNP	NCL	ENST00000322723	human	ensembl	74_37	-1	known	missense	c.1718	p.T573N	1.000	smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				78	0	0	45	17	27.4194
LINC00471	0	genome.wustl.edu	37	2	232373806	232373806	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	232373806	232373806	G	A	SNP	LINC00471	ENST00000313064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00471	HGNC	ENSG00000181798				216	0	0	115	48	29.4479
CHRNG	0	genome.wustl.edu	37	2	233407646	233407646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	233407646	233407646	C	T	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	missense	c.659	p.A220V	0.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				120	1	0.826446	49	24	32.8767
GIGYF2	0	genome.wustl.edu	37	2	233655451	233655451	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	233655451	233655451	T	C	SNP	GIGYF2	ENST00000373566	human	ensembl	74_37	+1	known	silent	c.822	p.R274	0.851	NULL	pfam_GYF,superfamily_GYF,smart_GYF,pfscan_GYF	-	no_errors	GIGYF2	HGNC	ENSG00000204120				277	0	0	175	87	33.2061
SAG	0	genome.wustl.edu	37	2	234217909	234217909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234217909	234217909	C	T	SNP	SAG	ENST00000409110	human	ensembl	74_37	+1	known	missense	c.74	p.S25L	1.000	superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561				49	0	0	28	15	34.8837
SAG	0	genome.wustl.edu	37	2	234243632	234243632	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234243632	234243632	T	G	SNP	SAG	ENST00000409110	human	ensembl	74_37	+1	known	silent	c.831	p.T277	0.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	SAG	HGNC	ENSG00000130561				147	0	0	72	42	36.8421
SAG	0	genome.wustl.edu	37	2	234255608	234255608	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234255608	234255608	G	A	SNP	SAG	ENST00000492629	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	SAG	HGNC	ENSG00000130561				18	0	0	6	6	50
USP40	0	genome.wustl.edu	37	2	234394260	234394260	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234394260	234394260	T	C	SNP	USP40	ENST00000450966	human	ensembl	74_37	-1	known	missense	c.3454	p.T1152A	0.144	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP40	HGNC	ENSG00000085982				37	0	0	16	9	36
UGT1A9	0	genome.wustl.edu	37	2	234580975	234580975	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234580975	234580975	A	C	SNP	UGT1A9	ENST00000354728	human	ensembl	74_37	+1	known	missense	c.395	p.K132T	0.024	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119				107	0	0	75	38	33.6283
UGT1A9	0	genome.wustl.edu	37	2	234581149	234581149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234581149	234581149	T	C	SNP	UGT1A9	ENST00000354728	human	ensembl	74_37	+1	known	missense	c.569	p.V190A	0.995	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A9	HGNC	ENSG00000241119				337	0	0	177	90	33.7079
UGT1A7	0	genome.wustl.edu	37	2	234590891	234590891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234590891	234590891	G	A	SNP	UGT1A7	ENST00000373426	human	ensembl	74_37	+1	known	missense	c.308	p.R103Q	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A7	HGNC	ENSG00000244122				210	0	0	122	50	29.0698
UGT1A6	0	genome.wustl.edu	37	2	234602500	234602500	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234602500	234602500	G	T	SNP	UGT1A6	ENST00000305139	human	ensembl	74_37	+1	known	missense	c.850	p.D284Y	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A6	HGNC	ENSG00000167165				606	0	0	339	159	31.9277
UGT1A3	0	genome.wustl.edu	37	2	234638079	234638079	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234638079	234638079	A	G	SNP	UGT1A3	ENST00000482026	human	ensembl	74_37	+1	known	missense	c.307	p.T103A	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A3	HGNC	ENSG00000243135				206	0	0	114	64	35.9551
SPP2	0	genome.wustl.edu	37	2	234975882	234975882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	234975882	234975882	G	A	SNP	SPP2	ENST00000168148	human	ensembl	74_37	+1	known	missense	c.514	p.E172K	0.001	pfam_Spp-24	pfam_Spp-24,pfam_Prot_inh_cystat	-	no_errors	SPP2	HGNC	ENSG00000072080				142	0	0	104	42	28.7671
ARL4C	0	genome.wustl.edu	37	2	235404458	235404458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	235404458	235404458	C	T	SNP	ARL4C	ENST00000339728	human	ensembl	74_37	-1	known	missense	c.598	p.E200K	0.023	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4C	HGNC	ENSG00000188042				128	0	0	54	19	26.0274
SH3BP4	0	genome.wustl.edu	37	2	235951091	235951091	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	235951091	235951091	C	T	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	nonsense	c.1678	p.R560*	0.980	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				133	0	0	78	42	35
AGAP1	0	genome.wustl.edu	37	2	236659049	236659049	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	236659049	236659049	A	C	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.590	p.K197T	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				216	0	0	96	50	34.2466
ASB18	0	genome.wustl.edu	37	2	237172856	237172856	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	237172856	237172856	C	T	SNP	ASB18	ENST00000409749	human	ensembl	74_37	-1	known	missense	c.133	p.A45T	0.993	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB18	HGNC	ENSG00000182177				49	0	0	34	20	37.037
COL6A3	0	genome.wustl.edu	37	2	238275778	238275778	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238275778	238275778	G	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.5052	p.N1684K	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				62	0	0	36	7	16.2791
COL6A3	0	genome.wustl.edu	37	2	238287555	238287555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238287555	238287555	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.2221	p.E741K	0.915	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				84	0	0	43	18	29.5082
COL6A3	0	genome.wustl.edu	37	2	238289942	238289942	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238289942	238289942	T	G	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.1513	p.K505Q	0.064	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				210	0	0	127	58	31.3514
COL6A3	0	genome.wustl.edu	37	2	238303336	238303336	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238303336	238303336	C	A	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	missense	c.603	p.E201D	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				108	0	0	65	33	33.6735
RBM44	0	genome.wustl.edu	37	2	238726139	238726139	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238726139	238726139	G	T	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	nonsense	c.580	p.E194*	0.986	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				19	0	0	11	15	57.6923
RBM44	0	genome.wustl.edu	37	2	238726184	238726184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238726184	238726184	G	A	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	missense	c.625	p.A209T	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				36	0	0	24	13	35.1351
RBM44	0	genome.wustl.edu	37	2	238726378	238726378	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238726378	238726378	A	C	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	missense	c.819	p.E273D	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				40	0	0	25	12	32.4324
UBE2F	0	genome.wustl.edu	37	2	238940868	238940868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	238940868	238940868	C	T	SNP	UBE2F	ENST00000439780	human	ensembl	74_37	+1	known	missense	c.359	p.S120L	0.991	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2F	HGNC	ENSG00000184182				40	0	0	18	6	25
KLHL30	0	genome.wustl.edu	37	2	239049818	239049818	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	239049818	239049818	C	T	SNP	KLHL30	ENST00000409223	human	ensembl	74_37	+1	known	silent	c.423	p.F141	0.288	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427				56	0	0	24	4	14.2857
HES6	0	genome.wustl.edu	37	2	239147925	239147925	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	239147925	239147925	T	C	SNP	HES6	ENST00000409160	human	ensembl	74_37	-1	known	silent	c.453	p.G151	0.005	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HES6	HGNC	ENSG00000144485				27	0	0	15	3	16.6667
PER2	0	genome.wustl.edu	37	2	239161703	239161703	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	239161703	239161703	C	T	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	silent	c.2961	p.S987	0.001	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				105	0	0	46	30	39.4737
PPP1R7	0	genome.wustl.edu	37	2	242089964	242089964	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	242089964	242089964	T	C	SNP	PPP1R7	ENST00000234038	human	ensembl	74_37	+1	known	splice_site	c.52+2	e1+2	1.000	-	-	-	no_errors	PPP1R7	HGNC	ENSG00000115685				20	0	0	12	5	29.4118
ANO7	0	genome.wustl.edu	37	2	242151518	242151518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	242151518	242151518	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.1733	p.R578H	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				125	0	0	64	23	26.4368
ANO7	0	genome.wustl.edu	37	2	242163334	242163334	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	242163334	242163334	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	silent	c.2709	p.T903	0.001	NULL	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				133	0	0	65	30	31.5789
FKBP1B	0	genome.wustl.edu	37	2	24285954	24285954	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	24285954	24285954	G	A	SNP	FKBP1B	ENST00000380986	human	ensembl	74_37	+1	known	silent	c.219	p.A73	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP1B	HGNC	ENSG00000119782				67	0	0	40	28	41.1765
NCOA1	0	genome.wustl.edu	37	2	24888773	24888773	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	24888773	24888773	G	T	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.245	p.R82I	1.000	superfamily_bHLH_dom,smart_bHLH_dom,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				81	0	0	71	26	26.8041
ADCY3	0	genome.wustl.edu	37	2	25050927	25050927	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	25050927	25050927	A	G	SNP	ADCY3	ENST00000260600	human	ensembl	74_37	-1	known	missense	c.2276	p.V759A	1.000	NULL	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY3	HGNC	ENSG00000138031				97	0	0	30	25	45.4545
ASXL2	0	genome.wustl.edu	37	2	25965983	25965983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	25965983	25965983	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.3223	p.R1075W	0.998	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				110	0	0	62	26	29.5455
CIB4	0	genome.wustl.edu	37	2	26804180	26804180	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	26804180	26804180	C	T	SNP	CIB4	ENST00000403670	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	CIB4	HGNC	ENSG00000157884				39	0	0	15	7	31.8182
AGBL5	0	genome.wustl.edu	37	2	27275836	27275836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27275836	27275836	C	T	SNP	AGBL5	ENST00000360131	human	ensembl	74_37	+1	known	missense	c.10	p.R4C	1.000	NULL	pfam_Peptidase_M14	-	no_errors	AGBL5	HGNC	ENSG00000084693				75	0	0	24	21	46.6667
ABHD1	0	genome.wustl.edu	37	2	27346824	27346824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27346824	27346824	G	A	SNP	ABHD1	ENST00000316470	human	ensembl	74_37	+1	known	missense	c.8	p.S3N	0.001	pirsf_AB-Hydro_YheT	pfam_AB_hydrolase_1,pirsf_AB-Hydro_YheT	-	no_errors	ABHD1	HGNC	ENSG00000143994				101	0	0	45	23	33.8235
SLC5A6	0	genome.wustl.edu	37	2	27429798	27429798	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27429798	27429798	G	A	SNP	SLC5A6	ENST00000310574	human	ensembl	74_37	-1	known	nonsense	c.406	p.R136*	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A6	HGNC	ENSG00000138074				364	0	0	167	101	37.6866
CAD	0	genome.wustl.edu	37	2	27447234	27447234	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27447234	27447234	G	A	SNP	CAD	ENST00000264705	human	ensembl	74_37	+1	known	missense	c.1130	p.R377H	1.000	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774				132	0	0	72	36	33.3333
SLC30A3	0	genome.wustl.edu	37	2	27480771	27480771	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27480771	27480771	A	G	SNP	SLC30A3	ENST00000233535	human	ensembl	74_37	-1	known	splice_site	c.578+2	e4+2	1.000	-	-	-	no_errors	SLC30A3	HGNC	ENSG00000115194				36	0	0	9	6	40
TRIM54	0	genome.wustl.edu	37	2	27528963	27528963	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27528963	27528963	A	G	SNP	TRIM54	ENST00000296098	human	ensembl	74_37	+1	known	missense	c.985	p.I329V	1.000	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_Chorismate_mutase_type_II,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM54	HGNC	ENSG00000138100				83	0	0	38	21	35.5932
PPM1G	0	genome.wustl.edu	37	2	27604548	27604548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27604548	27604548	C	T	SNP	PPM1G	ENST00000344034	human	ensembl	74_37	-1	known	missense	c.1559	p.R520Q	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1G	HGNC	ENSG00000115241				236	0	0	123	56	31.2849
PPM1G	0	genome.wustl.edu	37	2	27608664	27608664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27608664	27608664	C	T	SNP	PPM1G	ENST00000344034	human	ensembl	74_37	-1	known	missense	c.359	p.R120Q	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1G	HGNC	ENSG00000115241				98	0	0	53	16	23.1884
NRBP1	0	genome.wustl.edu	37	2	27662758	27662758	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27662758	27662758	A	G	SNP	NRBP1	ENST00000233557	human	ensembl	74_37	+1	known	silent	c.1029	p.G343	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NRBP1	HGNC	ENSG00000115216				156	0	0	76	52	40.625
IFT172	0	genome.wustl.edu	37	2	27682647	27682647	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27682647	27682647	C	A	SNP	IFT172	ENST00000260570	human	ensembl	74_37	-1	known	missense	c.2571	p.E857D	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat	-	no_errors	IFT172	HGNC	ENSG00000138002				347	0	0	187	85	31.25
GCKR	0	genome.wustl.edu	37	2	27745360	27745360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27745360	27745360	G	A	SNP	GCKR	ENST00000264717	human	ensembl	74_37	+1	known	missense	c.1606	p.E536K	0.266	NULL	NULL	-	no_errors	GCKR	HGNC	ENSG00000084734				149	0	0	68	52	43.3333
C2orf16	0	genome.wustl.edu	37	2	27801127	27801127	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27801127	27801127	T	G	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.1688	p.V563G	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				115	0	0	62	28	31.1111
C2orf16	0	genome.wustl.edu	37	2	27802287	27802287	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27802287	27802287	A	G	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.2848	p.I950V	0.000	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				93	0	0	66	28	29.7872
C2orf16	0	genome.wustl.edu	37	2	27803866	27803866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27803866	27803866	G	A	SNP	C2orf16	ENST00000408964	human	ensembl	74_37	+1	known	missense	c.4427	p.R1476K	0.001	NULL	NULL	-	no_errors	C2orf16	HGNC	ENSG00000221843				237	0	0	119	58	32.7684
GPN1	0	genome.wustl.edu	37	2	27873033	27873033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	27873033	27873033	C	T	SNP	GPN1	ENST00000264718	human	ensembl	74_37	+1	known	missense	c.1133	p.S378L	1.000	NULL	pfam_Uncharacterised_ATP-bd,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	GPN1	HGNC	ENSG00000198522				59	0	0	45	12	21.0526
PLB1	0	genome.wustl.edu	37	2	28843160	28843160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	28843160	28843160	C	T	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.3311	p.S1104F	0.003	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803				41	0	0	19	8	29.6296
WDR43	0	genome.wustl.edu	37	2	29152516	29152516	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29152516	29152516	G	A	SNP	WDR43	ENST00000407426	human	ensembl	74_37	+1	known	silent	c.1377	p.T459	0.047	NULL	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR43	HGNC	ENSG00000163811				57	0	0	39	12	23.5294
C2orf71	0	genome.wustl.edu	37	2	29295831	29295831	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29295831	29295831	G	A	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.1297	p.P433S	0.003	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				109	0	0	59	40	40.404
C2orf71	0	genome.wustl.edu	37	2	29296217	29296217	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29296217	29296217	G	T	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.911	p.A304E	0.067	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				210	0	0	97	47	32.6389
CLIP4	0	genome.wustl.edu	37	2	29356672	29356672	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29356672	29356672	G	A	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	silent	c.519	p.S173	0.216	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				65	0	0	45	23	33.8235
CLIP4	0	genome.wustl.edu	37	2	29404458	29404458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29404458	29404458	G	A	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	missense	c.1817	p.R606H	0.997	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				109	0	0	46	28	37.8378
CLIP4	0	genome.wustl.edu	37	2	29404707	29404707	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29404707	29404707	G	T	SNP	CLIP4	ENST00000320081	human	ensembl	74_37	+1	known	missense	c.2066	p.R689I	1.000	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,pfam_Ankyrin_rpt,superfamily_CAP-Gly_domain,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_CAP-Gly_domain	-	no_errors	CLIP4	HGNC	ENSG00000115295				160	0	0	100	46	31.5068
ALK	0	genome.wustl.edu	37	2	29754886	29754886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	29754886	29754886	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.1049	p.S350L	0.979	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,pfscan_MAM_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				122	0	0	81	27	25
LBH	0	genome.wustl.edu	37	2	30480466	30480466	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	30480466	30480466	G	A	SNP	LBH	ENST00000395323	human	ensembl	74_37	+1	known	silent	c.297	p.A99	0.823	pirsf_LBH	pirsf_LBH,prints_LBH	-	no_errors	LBH	HGNC	ENSG00000213626				58	0	0	36	17	32.0755
LCLAT1	0	genome.wustl.edu	37	2	30785083	30785083	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	30785083	30785083	G	T	SNP	LCLAT1	ENST00000309052	human	ensembl	74_37	+1	known	missense	c.550	p.D184Y	1.000	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	LCLAT1	HGNC	ENSG00000172954				76	0	0	44	22	33.3333
GALNT14	0	genome.wustl.edu	37	2	31168724	31168724	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	31168724	31168724	C	A	SNP	GALNT14	ENST00000349752	human	ensembl	74_37	-1	known	missense	c.667	p.V223L	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT14	HGNC	ENSG00000158089				67	0	0	43	23	34.8485
XDH	0	genome.wustl.edu	37	2	31590912	31590912	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	31590912	31590912	C	A	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.2112	p.K704N	0.973	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125				188	0	0	87	46	34.5865
ENSG00000265267	0	genome.wustl.edu	37	2	32048170	32048170	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32048170	32048170	C	T	SNP	ENSG00000265267	ENST00000580521	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.991	-	-	-	no_errors	AL121652.3	Clone_based_ensembl_gene	ENSG00000265267				26	0	0	8	8	50
MEMO1	0	genome.wustl.edu	37	2	32094943	32094943	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32094943	32094943	T	G	SNP	MEMO1	ENST00000379383	human	ensembl	74_37	-1	known	silent	c.745	p.R249	1.000	pfam_MEMO1_fam	pfam_MEMO1_fam	-	no_errors	MEMO1	HGNC	ENSG00000162959				57	0	0	55	28	33.7349
SPAST	0	genome.wustl.edu	37	2	32341202	32341202	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32341202	32341202	A	C	SNP	SPAST	ENST00000315285	human	ensembl	74_37	+1	known	missense	c.1019	p.K340T	1.000	superfamily_P-loop_NTPase,pirsf_Spastin	pfam_ATPase_AAA_core,pfam_MIT,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase,pirsf_Spastin	-	no_errors	SPAST	HGNC	ENSG00000021574				65	0	0	50	21	29.5775
SLC30A6	0	genome.wustl.edu	37	2	32399179	32399179	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32399179	32399179	C	T	SNP	SLC30A6	ENST00000282587	human	ensembl	74_37	+1	known	silent	c.138	p.G46	0.995	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A6	HGNC	ENSG00000152683				128	0	0	80	35	30.4348
NLRC4	0	genome.wustl.edu	37	2	32475614	32475614	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32475614	32475614	T	G	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.1319	p.K440T	0.999	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				94	0	0	53	27	33.75
NLRC4	0	genome.wustl.edu	37	2	32475815	32475815	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32475815	32475815	T	G	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.1118	p.K373T	0.994	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				87	0	0	48	26	35.1351
YIPF4	0	genome.wustl.edu	37	2	32515614	32515614	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32515614	32515614	G	T	SNP	YIPF4	ENST00000238831	human	ensembl	74_37	+1	known	nonsense	c.142	p.E48*	1.000	NULL	pfam_Yip1	-	no_errors	YIPF4	HGNC	ENSG00000119820				114	0	0	80	38	32.2034
BIRC6	0	genome.wustl.edu	37	2	32640623	32640623	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32640623	32640623	A	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.2264	p.E755A	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				68	0	0	59	20	25.3165
BIRC6	0	genome.wustl.edu	37	2	32715152	32715152	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32715152	32715152	A	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.8140	p.T2714P	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				204	0	0	121	60	33.1492
BIRC6	0	genome.wustl.edu	37	2	32750029	32750029	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32750029	32750029	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	nonsense	c.11698	p.E3900*	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				8	0	0	6	3	33.3333
BIRC6	0	genome.wustl.edu	37	2	32754810	32754810	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32754810	32754810	A	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.12013	p.T4005P	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				69	0	0	40	21	34.4262
BIRC6	0	genome.wustl.edu	37	2	32768549	32768549	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32768549	32768549	G	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.12533	p.R4178I	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				168	0	0	99	73	42.4419
BIRC6	0	genome.wustl.edu	37	2	32820140	32820140	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32820140	32820140	A	C	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.13541	p.K4514T	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				47	0	0	37	14	27.451
TTC27	0	genome.wustl.edu	37	2	32983575	32983575	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	32983575	32983575	A	C	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	missense	c.1669	p.N557H	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				64	0	0	31	20	39.2157
TTC27	0	genome.wustl.edu	37	2	33002962	33002962	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	33002962	33002962	T	G	SNP	TTC27	ENST00000317907	human	ensembl	74_37	+1	known	missense	c.1694	p.F565C	1.000	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC27	HGNC	ENSG00000018699				70	0	0	45	15	25
RASGRP3	0	genome.wustl.edu	37	2	33745024	33745024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	33745024	33745024	G	A	SNP	RASGRP3	ENST00000402538	human	ensembl	74_37	+1	known	missense	c.179	p.R60Q	0.998	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689				11	0	0	9	3	25
FEZ2	0	genome.wustl.edu	37	2	36806135	36806135	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	36806135	36806135	T	C	SNP	FEZ2	ENST00000487282	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FEZ2	HGNC	ENSG00000171055				19	0	0	11	9	45
STRN	0	genome.wustl.edu	37	2	37152306	37152306	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37152306	37152306	A	C	SNP	STRN	ENST00000263918	human	ensembl	74_37	-1	known	missense	c.280	p.L94V	0.991	pfam_Striatin_N	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN	HGNC	ENSG00000115808				118	0	0	87	32	26.8908
ALLC	0	genome.wustl.edu	37	2	3729284	3729284	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	3729284	3729284	A	C	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	missense	c.359	p.E120A	0.869	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360				32	0	0	12	3	20
SULT6B1	0	genome.wustl.edu	37	2	37410583	37410583	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37410583	37410583	G	A	SNP	SULT6B1	ENST00000535679	human	ensembl	74_37	-1	known	silent	c.387	p.F129	0.734	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT6B1	HGNC	ENSG00000138068				91	0	0	66	29	30.5263
NDUFAF7	0	genome.wustl.edu	37	2	37459390	37459390	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37459390	37459390	T	C	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	missense	c.197	p.V66A	1.000	NULL	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509				183	0	0	101	35	25.7353
NDUFAF7	0	genome.wustl.edu	37	2	37471104	37471104	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37471104	37471104	A	C	SNP	NDUFAF7	ENST00000002125	human	ensembl	74_37	+1	known	missense	c.780	p.E260D	1.000	pfam_MidA	pfam_MidA	-	no_errors	NDUFAF7	HGNC	ENSG00000003509				41	0	0	23	17	42.5
PRKD3	0	genome.wustl.edu	37	2	37513463	37513463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37513463	37513463	C	T	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	missense	c.767	p.R256H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				119	0	0	54	22	28.9474
PRKD3	0	genome.wustl.edu	37	2	37543449	37543449	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	37543449	37543449	A	C	SNP	PRKD3	ENST00000234179	human	ensembl	74_37	-1	known	silent	c.219	p.V73	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD3	HGNC	ENSG00000115825				209	0	0	137	74	35.0711
RMDN2	0	genome.wustl.edu	37	2	38178913	38178913	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	38178913	38178913	A	C	SNP	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	missense	c.555	p.K185N	0.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841				98	0	0	72	39	35.1351
ATL2	0	genome.wustl.edu	37	2	38523628	38523628	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	38523628	38523628	A	C	SNP	ATL2	ENST00000419554	human	ensembl	74_37	-1	known	missense	c.1737	p.N579K	1.000	NULL	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_P-loop_NTPase,superfamily_Guanylate-bd_C	-	no_errors	ATL2	HGNC	ENSG00000119787				24	0	0	15	12	44.4444
GALM	0	genome.wustl.edu	37	2	38956751	38956751	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	38956751	38956751	C	T	SNP	GALM	ENST00000272252	human	ensembl	74_37	+1	known	missense	c.688	p.L230F	1.000	pfam_Aldose_1/G6P_1-epimerase,superfamily_Gal_mutarotase_SF_dom	pfam_Aldose_1/G6P_1-epimerase,superfamily_Gal_mutarotase_SF_dom	-	no_errors	GALM	HGNC	ENSG00000143891				142	0	0	88	35	28.4553
SOS1	0	genome.wustl.edu	37	2	39281904	39281904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	39281904	39281904	C	T	SNP	SOS1	ENST00000402219	human	ensembl	74_37	-1	known	missense	c.571	p.E191K	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904				141	0	0	109	51	31.875
MAP4K3	0	genome.wustl.edu	37	2	39492390	39492390	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	39492390	39492390	A	C	SNP	MAP4K3	ENST00000263881	human	ensembl	74_37	-1	known	missense	c.2090	p.V697G	1.000	pfam_Citron,smart_Citron	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K3	HGNC	ENSG00000011566				190	0	0	127	57	30.9783
SLC8A1	0	genome.wustl.edu	37	2	40405582	40405582	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	40405582	40405582	C	A	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.1860	p.K620N	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				287	0	0	182	72	28.3465
SLC8A1	0	genome.wustl.edu	37	2	40655689	40655689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	40655689	40655689	C	T	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.1732	p.E578K	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				113	0	0	65	30	31.5789
SLC8A1	0	genome.wustl.edu	37	2	40656049	40656049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	40656049	40656049	C	T	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.1372	p.E458K	1.000	pfam_Calx_beta,smart_Calx_beta,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				102	0	0	56	33	37.0787
KCNG3	0	genome.wustl.edu	37	2	42720290	42720290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	42720290	42720290	C	T	SNP	KCNG3	ENST00000306078	human	ensembl	74_37	-1	known	missense	c.352	p.D118N	1.000	smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG3	HGNC	ENSG00000171126				27	0	0	18	9	33.3333
THADA	0	genome.wustl.edu	37	2	43779352	43779352	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	43779352	43779352	A	C	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	nonsense	c.2801	p.L934*	0.931	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970				14	0	0	19	14	42.4242
LRPPRC	0	genome.wustl.edu	37	2	44153069	44153069	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	44153069	44153069	A	C	SNP	LRPPRC	ENST00000260665	human	ensembl	74_37	-1	known	missense	c.2768	p.L923R	1.000	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095				66	0	0	42	20	32.2581
SLC3A1	0	genome.wustl.edu	37	2	44539839	44539839	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	44539839	44539839	G	T	SNP	SLC3A1	ENST00000260649	human	ensembl	74_37	+1	known	nonsense	c.1447	p.E483*	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A1	HGNC	ENSG00000138079				83	0	0	39	22	36.0656
CAMKMT	0	genome.wustl.edu	37	2	44999207	44999207	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	44999207	44999207	A	C	SNP	CAMKMT	ENST00000378494	human	ensembl	74_37	+1	known	missense	c.927	p.E309D	1.000	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	CAMKMT	HGNC	ENSG00000143919				90	0	0	56	40	41.6667
SIX2	0	genome.wustl.edu	37	2	45235953	45235953	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	45235953	45235953	G	A	SNP	SIX2	ENST00000303077	human	ensembl	74_37	-1	known	silent	c.297	p.R99	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX2	HGNC	ENSG00000170577				127	0	0	44	17	27.8689
SRBD1	0	genome.wustl.edu	37	2	45645648	45645648	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	45645648	45645648	T	G	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	missense	c.2189	p.K730T	1.000	superfamily_RuvA_2-like	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				104	0	0	54	41	43.1579
SRBD1	0	genome.wustl.edu	37	2	45812864	45812864	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	45812864	45812864	A	G	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	missense	c.698	p.I233T	0.999	pfam_Tex-like_N	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784				93	0	0	89	51	36.4286
PIGF	0	genome.wustl.edu	37	2	46815305	46815305	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	46815305	46815305	C	A	SNP	PIGF	ENST00000306465	human	ensembl	74_37	-1	known	missense	c.560	p.R187I	0.000	NULL	pfam_GPI_biosynthesis_protein_Pig-F	-	no_errors	PIGF	HGNC	ENSG00000151665				54	0	0	58	7	10.7692
MCFD2	0	genome.wustl.edu	37	2	47132478	47132478	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	47132478	47132478	G	A	SNP	MCFD2	ENST00000470873	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.085	-	-	-	no_errors	MCFD2	HGNC	ENSG00000180398				29	0	0	11	14	56
MSH2	0	genome.wustl.edu	37	2	47710069	47710069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	47710069	47710069	G	A	SNP	MSH2	ENST00000233146	human	ensembl	74_37	+1	known	missense	c.2786	p.R929Q	0.989	pirsf_DNA_mismatch_repair_MSH2	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_MSH2	-	no_errors	MSH2	HGNC	ENSG00000095002				35	0	0	25	20	44.4444
MSH6	0	genome.wustl.edu	37	2	48026079	48026079	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	48026079	48026079	G	A	SNP	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	silent	c.957	p.T319	0.000	pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				338	1	0.294985	211	107	33.6478
FOXN2	0	genome.wustl.edu	37	2	48573716	48573716	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	48573716	48573716	T	G	SNP	FOXN2	ENST00000340553	human	ensembl	74_37	+1	known	missense	c.363	p.I121M	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN2	HGNC	ENSG00000170802				236	0	0	162	75	31.6456
PPP1R21	0	genome.wustl.edu	37	2	48734422	48734422	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	48734422	48734422	A	C	SNP	PPP1R21	ENST00000294952	human	ensembl	74_37	+1	known	missense	c.1983	p.E661D	0.845	pfam_KLRAQ/TTKRSYEDQ_C	pfam_KLRAQ/TTKRSYEDQ_C,pfam_Unchr_KLRAQ/TTKRSYEDQ_N,superfamily_Ferritin-like_SF	-	no_errors	PPP1R21	HGNC	ENSG00000162869				56	0	0	40	13	24.5283
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48809412	48809412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	48809412	48809412	T	C	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	missense	c.1640	p.V547A	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				203	0	0	89	34	27.6423
LHCGR	0	genome.wustl.edu	37	2	48915276	48915276	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	48915276	48915276	G	A	SNP	LHCGR	ENST00000294954	human	ensembl	74_37	-1	known	nonsense	c.1660	p.R554*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_LSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LHCGR	HGNC	ENSG00000138039				111	0	0	99	37	27.2059
FSHR	0	genome.wustl.edu	37	2	49216184	49216184	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	49216184	49216184	T	G	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.456	p.Q152H	1.000	prints_FSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				32	0	0	27	14	34.1463
NRXN1	0	genome.wustl.edu	37	2	50464092	50464092	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	50464092	50464092	G	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.3357	p.I1119	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				82	0	0	65	25	27.7778
NRXN1	0	genome.wustl.edu	37	2	50779867	50779867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	50779867	50779867	G	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.1593	p.D531E	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				140	0	0	79	49	38.2812
NRXN1	0	genome.wustl.edu	37	2	50850557	50850557	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	50850557	50850557	G	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.1029	p.V343	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				170	0	0	101	39	27.8571
ERLEC1	0	genome.wustl.edu	37	2	54028678	54028678	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54028678	54028678	C	A	SNP	ERLEC1	ENST00000185150	human	ensembl	74_37	+1	known	missense	c.670	p.L224I	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	ERLEC1	HGNC	ENSG00000068912				81	0	0	41	32	43.8356
PSME4	0	genome.wustl.edu	37	2	54114544	54114544	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54114544	54114544	C	T	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	silent	c.4581	p.S1527	0.974	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				84	0	0	49	27	35.5263
PSME4	0	genome.wustl.edu	37	2	54117282	54117282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54117282	54117282	C	T	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.4255	p.E1419K	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				208	0	0	125	52	29.3785
PSME4	0	genome.wustl.edu	37	2	54154547	54154547	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54154547	54154547	C	A	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.1577	p.R526I	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				111	0	0	84	34	28.8136
PSME4	0	genome.wustl.edu	37	2	54159188	54159188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54159188	54159188	C	A	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.1100	p.R367I	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				124	0	0	72	22	23.4043
ACYP2	0	genome.wustl.edu	37	2	54365782	54365782	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54365782	54365782	G	T	SNP	ACYP2	ENST00000394666	human	ensembl	74_37	+1	known	nonsense	c.82	p.E28*	0.999	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,pfscan_Acylphosphatase-like	pfam_Acylphosphatase-like,superfamily_Acylphosphatase-like,pfscan_Acylphosphatase-like,prints_Acylphosphatase	-	no_errors	ACYP2	HGNC	ENSG00000170634				34	0	0	24	17	41.4634
SPTBN1	0	genome.wustl.edu	37	2	54839399	54839399	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54839399	54839399	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	silent	c.402	p.G134	0.094	pirsf_Spectrin_bsu,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				137	0	0	68	31	31.3131
SPTBN1	0	genome.wustl.edu	37	2	54858050	54858050	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54858050	54858050	A	G	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.2866	p.S956G	1.000	pirsf_Spectrin_bsu	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				64	0	0	20	10	33.3333
SPTBN1	0	genome.wustl.edu	37	2	54885016	54885016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	54885016	54885016	G	A	SNP	SPTBN1	ENST00000356805	human	ensembl	74_37	+1	known	missense	c.6076	p.A2026T	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN1	HGNC	ENSG00000115306				103	0	0	60	20	25
CLHC1	0	genome.wustl.edu	37	2	55449628	55449628	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55449628	55449628	G	A	SNP	CLHC1	ENST00000463300	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.014	-	-	-	no_errors	CLHC1	HGNC	ENSG00000162994				33	0	0	24	14	36.8421
ENSG00000240401	0	genome.wustl.edu	37	2	55535890	55535890	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55535890	55535890	A	C	SNP	ENSG00000240401	ENST00000366287	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC012358.8	Clone_based_vega_gene	ENSG00000240401				13	0	0	11	12	52.1739
CCDC88A	0	genome.wustl.edu	37	2	55546112	55546112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55546112	55546112	G	A	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	missense	c.3191	p.A1064V	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				91	0	0	52	23	30.6667
CCDC88A	0	genome.wustl.edu	37	2	55561360	55561360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55561360	55561360	T	C	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	missense	c.2597	p.N866S	1.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				39	0	0	50	27	35.0649
CCDC88A	0	genome.wustl.edu	37	2	55561901	55561901	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55561901	55561901	T	C	SNP	CCDC88A	ENST00000436346	human	ensembl	74_37	-1	known	missense	c.2056	p.T686A	0.941	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC88A	HGNC	ENSG00000115355				46	0	0	40	12	23.0769
CCDC88A	0	genome.wustl.edu	37	2	55646259	55646259	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55646259	55646259	C	T	SNP	CCDC88A	ENST00000471947	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	CCDC88A	HGNC	ENSG00000115355				20	0	0	14	10	41.6667
CCDC104	0	genome.wustl.edu	37	2	55772048	55772048	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55772048	55772048	G	T	SNP	CCDC104	ENST00000339012	human	ensembl	74_37	+1	known	missense	c.1008	p.M336I	1.000	NULL	pfam_ARF-like_2-bdp_dom	-	no_errors	CCDC104	HGNC	ENSG00000163001				34	0	0	15	6	28.5714
SMEK2	0	genome.wustl.edu	37	2	55825627	55825627	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	55825627	55825627	A	C	SNP	SMEK2	ENST00000272313	human	ensembl	74_37	-1	known	silent	c.846	p.V282	1.000	pfam_DUF625,superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK2	HGNC	ENSG00000138041				110	1	0.900901	93	7	7
EFEMP1	0	genome.wustl.edu	37	2	56149545	56149545	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	56149545	56149545	T	C	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	missense	c.31	p.T11A	1.000	NULL	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380				153	0	0	85	44	34.1085
VRK2	0	genome.wustl.edu	37	2	58386762	58386762	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	58386762	58386762	T	G	SNP	VRK2	ENST00000340157	human	ensembl	74_37	+1	known	silent	c.1461	p.V487	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	VRK2	HGNC	ENSG00000028116				80	0	0	61	28	31.4607
BCL11A	0	genome.wustl.edu	37	2	60687443	60687443	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	60687443	60687443	A	C	SNP	BCL11A	ENST00000477659	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866				30	0	0	22	12	35.2941
KIAA1841	0	genome.wustl.edu	37	2	61343163	61343163	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	61343163	61343163	A	G	SNP	KIAA1841	ENST00000356719	human	ensembl	74_37	+1	known	silent	c.1794	p.V598	0.906	NULL	pfam_DUF3342,superfamily_BTB/POZ_fold,superfamily_Homeodomain-like	-	no_errors	KIAA1841	HGNC	ENSG00000162929				100	0	0	83	32	27.8261
AHSA2	0	genome.wustl.edu	37	2	61411875	61411875	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	61411875	61411875	G	A	SNP	AHSA2	ENST00000357022	human	ensembl	74_37	+1	known	silent	c.15	p.T5	0.947	NULL	NULL	-	no_errors	AHSA2	HGNC	ENSG00000173209				71	0	0	36	22	37.931
USP34	0	genome.wustl.edu	37	2	61439030	61439030	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	61439030	61439030	A	C	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.8717	p.F2906C	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				64	0	0	34	21	38.1818
XPO1	0	genome.wustl.edu	37	2	61710173	61710173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	61710173	61710173	C	T	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.2731	p.A911T	1.000	pfam_CRM1_C_dom,superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				91	0	0	55	34	38.2022
XPO1	0	genome.wustl.edu	37	2	61722723	61722723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	61722723	61722723	C	T	SNP	XPO1	ENST00000401558	human	ensembl	74_37	-1	known	missense	c.914	p.R305Q	1.000	superfamily_ARM-type_fold	pfam_CRM1_C_dom,pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO1	HGNC	ENSG00000082898				66	0	0	46	16	25.8065
FAM161A	0	genome.wustl.edu	37	2	62067568	62067568	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	62067568	62067568	T	G	SNP	FAM161A	ENST00000405894	human	ensembl	74_37	-1	known	missense	c.571	p.M191L	0.000	NULL	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264				168	0	0	100	40	28.5714
AFTPH	0	genome.wustl.edu	37	2	64778749	64778749	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	64778749	64778749	C	T	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	silent	c.141	p.F47	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				213	0	0	182	32	14.9533
AFTPH	0	genome.wustl.edu	37	2	64778760	64778760	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	64778760	64778760	A	G	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.152	p.D51G	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				207	0	0	132	70	34.6535
AFTPH	0	genome.wustl.edu	37	2	64778948	64778948	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	64778948	64778948	G	T	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	nonsense	c.340	p.E114*	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				80	0	0	61	33	35.1064
AFTPH	0	genome.wustl.edu	37	2	64779504	64779504	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	64779504	64779504	T	C	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	missense	c.896	p.V299A	0.998	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				136	0	0	76	52	40.625
AFTPH	0	genome.wustl.edu	37	2	64794728	64794728	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	64794728	64794728	C	T	SNP	AFTPH	ENST00000422803	human	ensembl	74_37	+1	known	silent	c.1968	p.F656	1.000	NULL	NULL	-	no_errors	AFTPH	HGNC	ENSG00000119844				198	0	0	103	56	35.2201
ACTR2	0	genome.wustl.edu	37	2	65473846	65473846	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	65473846	65473846	A	C	SNP	ACTR2	ENST00000377982	human	ensembl	74_37	+1	known	silent	c.363	p.P121	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTR2	HGNC	ENSG00000138071				127	0	0	76	45	37.1901
MEIS1	0	genome.wustl.edu	37	2	66667099	66667099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	66667099	66667099	G	A	SNP	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	missense	c.364	p.A122T	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				24	0	0	14	7	33.3333
APLF	0	genome.wustl.edu	37	2	68765080	68765080	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	68765080	68765080	A	G	SNP	APLF	ENST00000303795	human	ensembl	74_37	+1	known	missense	c.881	p.N294S	0.000	NULL	pfam_Znf_C2H2_APLF-like,superfamily_SMAD_FHA_domain	-	no_errors	APLF	HGNC	ENSG00000169621				55	0	0	35	14	28.5714
ARHGAP25	0	genome.wustl.edu	37	2	69046560	69046560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69046560	69046560	G	A	SNP	ARHGAP25	ENST00000497079	human	ensembl	74_37	+1	known	missense	c.1288	p.V430M	0.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP25	HGNC	ENSG00000163219				25	0	0	7	9	56.25
BMP10	0	genome.wustl.edu	37	2	69092776	69092776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69092776	69092776	C	T	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	missense	c.1262	p.C421Y	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217				178	0	0	112	35	23.8095
BMP10	0	genome.wustl.edu	37	2	69093327	69093327	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69093327	69093327	T	C	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	silent	c.711	p.G237	0.986	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217				99	0	0	37	18	32.7273
ANTXR1	0	genome.wustl.edu	37	2	69409700	69409700	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69409700	69409700	C	T	SNP	ANTXR1	ENST00000303714	human	ensembl	74_37	+1	known	missense	c.1261	p.P421S	1.000	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_extracel,pfam_Anthrax_toxin_rcpt_C,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR1	HGNC	ENSG00000169604				124	0	0	89	38	29.9213
GFPT1	0	genome.wustl.edu	37	2	69586407	69586407	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69586407	69586407	T	G	SNP	GFPT1	ENST00000357308	human	ensembl	74_37	-1	known	missense	c.401	p.K134T	1.000	pfam_GATase_dom	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT1	HGNC	ENSG00000198380				84	0	0	53	45	45.9184
AAK1	0	genome.wustl.edu	37	2	69741737	69741737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	69741737	69741737	C	T	SNP	AAK1	ENST00000409085	human	ensembl	74_37	-1	known	missense	c.1642	p.A548T	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	AAK1	HGNC	ENSG00000115977				10	0	0	12	3	20
GMCL1	0	genome.wustl.edu	37	2	70096947	70096947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70096947	70096947	C	T	SNP	GMCL1	ENST00000282570	human	ensembl	74_37	+1	known	missense	c.1315	p.P439S	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	GMCL1	HGNC	ENSG00000087338				91	0	0	47	26	35.6164
MXD1	0	genome.wustl.edu	37	2	70162562	70162562	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70162562	70162562	T	C	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	silent	c.283	p.L95	0.043	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728				75	0	0	41	27	39.7059
TIA1	0	genome.wustl.edu	37	2	70441551	70441551	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70441551	70441551	A	G	SNP	TIA1	ENST00000433529	human	ensembl	74_37	-1	known	missense	c.964	p.Y322H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001				80	0	0	58	20	25.641
TIA1	0	genome.wustl.edu	37	2	70444014	70444014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70444014	70444014	C	T	SNP	TIA1	ENST00000416149	human	ensembl	74_37	-1	putative	missense	c.587	p.R196K	0.998	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001				370	0	0	211	112	34.6749
TIA1	0	genome.wustl.edu	37	2	70454891	70454891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70454891	70454891	G	A	SNP	TIA1	ENST00000433529	human	ensembl	74_37	-1	known	missense	c.374	p.A125V	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001				98	0	0	85	27	24.1071
PCYOX1	0	genome.wustl.edu	37	2	70503962	70503962	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	70503962	70503962	G	A	SNP	PCYOX1	ENST00000433351	human	ensembl	74_37	+1	known	missense	c.956	p.R319Q	0.640	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Amino_oxidase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1	HGNC	ENSG00000116005				60	0	0	37	14	27.451
ATP6V1B1	0	genome.wustl.edu	37	2	71163176	71163176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71163176	71163176	G	A	SNP	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	missense	c.92	p.R31Q	0.997	NULL	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				99	0	0	48	36	42.8571
MPHOSPH10	0	genome.wustl.edu	37	2	71360659	71360659	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71360659	71360659	G	T	SNP	MPHOSPH10	ENST00000244230	human	ensembl	74_37	+1	known	missense	c.721	p.D241Y	0.055	pfam_Mpp10,pirsf_snoRNP_Mpp10	pfam_Mpp10,pirsf_snoRNP_Mpp10	-	no_errors	MPHOSPH10	HGNC	ENSG00000124383				80	0	0	78	36	31.5789
ZNF638	0	genome.wustl.edu	37	2	71607323	71607323	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71607323	71607323	C	A	SNP	ZNF638	ENST00000486494	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF638	HGNC	ENSG00000075292				20	0	0	27	13	32.5
ZNF638	0	genome.wustl.edu	37	2	71653942	71653942	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71653942	71653942	T	G	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	nonsense	c.4943	p.L1648*	1.000	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				91	0	0	56	26	31.7073
DYSF	0	genome.wustl.edu	37	2	71766360	71766360	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71766360	71766360	G	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	nonsense	c.1564	p.E522*	0.998	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				101	0	0	62	30	32.6087
DYSF	0	genome.wustl.edu	37	2	71797810	71797810	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	71797810	71797810	G	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3206	p.R1069Q	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				55	0	0	24	12	33.3333
RNF144A	0	genome.wustl.edu	37	2	7179884	7179884	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	7179884	7179884	C	A	SNP	RNF144A	ENST00000320892	human	ensembl	74_37	+1	known	missense	c.872	p.P291H	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	RNF144A	HGNC	ENSG00000151692				92	0	0	44	17	27.8689
CYP26B1	0	genome.wustl.edu	37	2	72359686	72359686	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	72359686	72359686	C	T	SNP	CYP26B1	ENST00000001146	human	ensembl	74_37	-1	known	silent	c.1209	p.A403	0.112	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP26B1	HGNC	ENSG00000003137				62	0	0	13	12	48
EXOC6B	0	genome.wustl.edu	37	2	72742235	72742235	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	72742235	72742235	C	T	SNP	EXOC6B	ENST00000272427	human	ensembl	74_37	-1	known	silent	c.936	p.E312	1.000	pirsf_Sec15	pfam_Sec15,pirsf_Sec15	-	no_errors	EXOC6B	HGNC	ENSG00000144036				17	0	0	7	9	56.25
SMYD5	0	genome.wustl.edu	37	2	73449025	73449025	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73449025	73449025	A	C	SNP	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	missense	c.609	p.E203D	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632				129	0	0	47	32	40.5063
CCT7	0	genome.wustl.edu	37	2	73477500	73477500	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73477500	73477500	G	A	SNP	CCT7	ENST00000258091	human	ensembl	74_37	+1	known	silent	c.1137	p.E379	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624				204	0	0	98	42	30
ALMS1	0	genome.wustl.edu	37	2	73635812	73635812	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73635812	73635812	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.387	p.Q129H	0.285	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				77	0	0	80	12	13.0435
ALMS1	0	genome.wustl.edu	37	2	73675812	73675812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73675812	73675812	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.2155	p.E719K	0.038	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				231	0	0	166	77	31.6872
ALMS1	0	genome.wustl.edu	37	2	73679414	73679414	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73679414	73679414	T	G	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.5757	p.V1919	0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				99	0	0	69	27	28.125
ALMS1	0	genome.wustl.edu	37	2	73680757	73680757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73680757	73680757	G	A	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.7100	p.S2367N	0.033	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				138	0	0	84	26	23.6364
ALMS1	0	genome.wustl.edu	37	2	73717091	73717091	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73717091	73717091	C	T	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	nonsense	c.8002	p.R2668*	0.776	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				248	0	0	142	77	35.1598
ALMS1	0	genome.wustl.edu	37	2	73777441	73777441	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73777441	73777441	A	C	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	missense	c.9952	p.T3318P	0.991	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				123	0	0	67	37	35.5769
ALMS1	0	genome.wustl.edu	37	2	73826650	73826650	+	Splice_Site	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73826650	73826650	T	G	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	splice_site	c.11665+2	e17+2	0.997	-	-	-	no_errors	ALMS1	HGNC	ENSG00000116127				150	0	0	105	64	37.8698
NAT8	0	genome.wustl.edu	37	2	73868397	73868397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73868397	73868397	C	T	SNP	NAT8	ENST00000272425	human	ensembl	74_37	-1	known	missense	c.359	p.G120D	1.000	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035				142	0	0	73	39	34.8214
NAT8	0	genome.wustl.edu	37	2	73868654	73868654	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	73868654	73868654	C	T	SNP	NAT8	ENST00000272425	human	ensembl	74_37	-1	known	silent	c.102	p.R34	0.005	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAT8	HGNC	ENSG00000144035				206	0	0	102	64	38.5542
C2orf78	0	genome.wustl.edu	37	2	74043935	74043935	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	74043935	74043935	T	C	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	missense	c.2585	p.V862A	0.598	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833				85	0	0	46	28	37.8378
DCTN1	0	genome.wustl.edu	37	2	74594897	74594897	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	74594897	74594897	C	A	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	nonsense	c.2110	p.E704*	1.000	pfam_Dynactin,superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				90	0	0	40	27	40.2985
DQX1	0	genome.wustl.edu	37	2	74746199	74746199	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	74746199	74746199	G	T	SNP	DQX1	ENST00000393951	human	ensembl	74_37	-1	known	nonsense	c.1965	p.C655*	1.000	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DQX1	HGNC	ENSG00000144045				134	0	0	66	28	29.7872
AUP1	0	genome.wustl.edu	37	2	74754076	74754076	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	74754076	74754076	G	A	SNP	AUP1	ENST00000377526	human	ensembl	74_37	-1	known	silent	c.1188	p.Y396	0.292	NULL	pfam_CUE,smart_CUE,pfscan_CUE	-	no_errors	AUP1	HGNC	ENSG00000115307				87	0	0	84	6	6.66667
SEMA4F	0	genome.wustl.edu	37	2	74901669	74901669	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	74901669	74901669	G	A	SNP	SEMA4F	ENST00000357877	human	ensembl	74_37	+1	known	silent	c.867	p.T289	0.568	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4F	HGNC	ENSG00000135622				138	0	0	69	47	40.5172
HK2	0	genome.wustl.edu	37	2	75113653	75113653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	75113653	75113653	G	A	SNP	HK2	ENST00000290573	human	ensembl	74_37	+1	known	missense	c.2072	p.R691H	0.985	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399				124	0	0	74	32	30.1887
GCFC2	0	genome.wustl.edu	37	2	75897301	75897301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	75897301	75897301	G	A	SNP	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	missense	c.2066	p.A689V	0.416	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436				101	0	0	59	26	30.5882
GCFC2	0	genome.wustl.edu	37	2	75921549	75921549	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	75921549	75921549	T	C	SNP	GCFC2	ENST00000321027	human	ensembl	74_37	-1	known	missense	c.838	p.T280A	0.995	NULL	pfam_GCFC_dom	-	no_errors	GCFC2	HGNC	ENSG00000005436				106	0	0	76	41	35.0427
SUCLG1	0	genome.wustl.edu	37	2	84676772	84676772	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	84676772	84676772	C	T	SNP	SUCLG1	ENST00000393868	human	ensembl	74_37	-1	known	splice_site	c.201+1	e2+1	1.000	-	-	-	no_errors	SUCLG1	HGNC	ENSG00000163541				50	0	0	42	13	23.6364
DNAH6	0	genome.wustl.edu	37	2	84785047	84785047	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	84785047	84785047	T	C	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	silent	c.1791	p.I597	0.384	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423				69	0	0	62	27	30.3371
ATOH8	0	genome.wustl.edu	37	2	85981435	85981435	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	85981435	85981435	A	C	SNP	ATOH8	ENST00000306279	human	ensembl	74_37	+1	known	missense	c.123	p.K41N	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH8	HGNC	ENSG00000168874				64	0	0	32	11	25.5814
POLR1A	0	genome.wustl.edu	37	2	86270116	86270116	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	86270116	86270116	C	T	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	missense	c.3338	p.R1113H	1.000	pfam_RNA_pol_Rpb1_5	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654				160	0	0	70	30	30
RNF103	0	genome.wustl.edu	37	2	86831014	86831014	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	86831014	86831014	C	T	SNP	RNF103	ENST00000237455	human	ensembl	74_37	-1	known	silent	c.2010	p.K670	1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Thioredoxin-like_fold,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF103	HGNC	ENSG00000239305				172	0	0	90	35	28
RGPD2	0	genome.wustl.edu	37	2	88082726	88082726	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	88082726	88082726	T	G	SNP	RGPD2	ENST00000398146	human	ensembl	74_37	-1	known	missense	c.3817	p.N1273H	0.999	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR_1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304				24	0	0	13	9	40.9091
RGPD2	0	genome.wustl.edu	37	2	88082786	88082786	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	88082786	88082786	C	A	SNP	RGPD2	ENST00000398146	human	ensembl	74_37	-1	known	missense	c.3757	p.D1253Y	0.881	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_2,pfam_TPR_1,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD2	HGNC	ENSG00000185304				10	0	0	5	4	44.4444
ANKRD36BP2	0	genome.wustl.edu	37	2	89104032	89104032	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	89104032	89104032	A	G	SNP	ANKRD36BP2	ENST00000393525	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	ANKRD36BP2	HGNC	ENSG00000230006				12	0	0	7	6	46.1538
ENSG00000240040	0	genome.wustl.edu	37	2	89111204	89111204	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	89111204	89111204	G	A	SNP	ENSG00000240040	ENST00000452230	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.457	-	-	-	no_errors	AC096579.13	Clone_based_vega_gene	ENSG00000240040				44	0	0	31	10	24.3902
LOC101929518	0	genome.wustl.edu	37	2	95601102	95601102	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	95601102	95601102	T	C	SNP	LOC101929518	ENST00000568768	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.244	-	-	-	no_errors	AC097374.2	Clone_based_vega_gene	ENSG00000259848				21	0	0	19	9	32.1429
MRPS5	0	genome.wustl.edu	37	2	95766633	95766633	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	95766633	95766633	T	C	SNP	MRPS5	ENST00000272418	human	ensembl	74_37	-1	known	missense	c.817	p.N273D	1.000	pfam_Ribosomal_S5_N,pfscan_Ribosomal_S5_N	pfam_Ribosomal_S5_C,pfam_Ribosomal_S5_N,superfamily_Ribosomal_S5_D2-typ_fold,pfscan_Ribosomal_S5_N	-	no_errors	MRPS5	HGNC	ENSG00000144029				22	0	0	23	14	37.8378
ZNF514	0	genome.wustl.edu	37	2	95815627	95815627	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	95815627	95815627	C	A	SNP	ZNF514	ENST00000295208	human	ensembl	74_37	-1	known	missense	c.603	p.K201N	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF514	HGNC	ENSG00000144026				206	1	0.483092	108	67	38.2857
ENSG00000233757	0	genome.wustl.edu	37	2	95881123	95881123	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	95881123	95881123	T	C	SNP	ENSG00000233757	ENST00000444043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.538	-	-	-	no_errors	AC092835.2	Clone_based_vega_gene	ENSG00000233757				9	0	0	3	4	57.1429
KCNIP3	0	genome.wustl.edu	37	2	96048135	96048135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	96048135	96048135	C	T	SNP	KCNIP3	ENST00000295225	human	ensembl	74_37	+1	known	missense	c.566	p.A189V	1.000	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	KCNIP3	HGNC	ENSG00000115041				44	0	0	11	11	50
ANKRD36C	0	genome.wustl.edu	37	2	96593016	96593016	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	96593016	96593016	C	T	SNP	ANKRD36C	ENST00000456556	human	ensembl	74_37	-1	known	missense	c.1885	p.D629N	0.053	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36C	HGNC	ENSG00000174501				64	0	0	57	17	22.973
FAHD2CP	0	genome.wustl.edu	37	2	96687180	96687180	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	96687180	96687180	C	T	SNP	FAHD2CP	ENST00000443258	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	FAHD2CP	HGNC	ENSG00000231584				30	0	0	14	7	33.3333
ADRA2B	0	genome.wustl.edu	37	2	96781139	96781139	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	96781139	96781139	C	T	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	silent	c.750	p.S250	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				57	0	0	26	18	40.9091
FAHD2B	0	genome.wustl.edu	37	2	97749770	97749770	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	97749770	97749770	A	C	SNP	FAHD2B	ENST00000272610	human	ensembl	74_37	-1	known	missense	c.797	p.F266C	1.000	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	pfam_Fumarylacetoacetase_C,superfamily_Fumarylacetoacetase_C-rel	-	no_errors	FAHD2B	HGNC	ENSG00000144199				53	0	0	30	17	36.1702
ANKRD36B	0	genome.wustl.edu	37	2	98165944	98165944	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	98165944	98165944	A	G	SNP	ANKRD36B	ENST00000443455	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ANKRD36B	HGNC	ENSG00000196912				16	0	0	7	6	46.1538
ZAP70	0	genome.wustl.edu	37	2	98341627	98341627	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	98341627	98341627	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.475	p.E159K	1.000	pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				72	0	0	34	26	43.3333
ZAP70	0	genome.wustl.edu	37	2	98354262	98354262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	98354262	98354262	G	A	SNP	ZAP70	ENST00000264972	human	ensembl	74_37	+1	known	missense	c.1525	p.E509K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ZAP70	HGNC	ENSG00000115085				273	1	0.364964	146	57	28.0788
TMEM131	0	genome.wustl.edu	37	2	98409193	98409193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	98409193	98409193	G	A	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.3800	p.S1267L	0.181	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				73	0	0	35	21	37.5
TMEM131	0	genome.wustl.edu	37	2	98431743	98431743	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	98431743	98431743	A	C	SNP	TMEM131	ENST00000186436	human	ensembl	74_37	-1	known	missense	c.1211	p.F404C	1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568				47	0	0	41	12	22.6415
LIPT1	0	genome.wustl.edu	37	2	99779151	99779151	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	99779151	99779151	A	G	SNP	LIPT1	ENST00000340066	human	ensembl	74_37	+1	known	missense	c.731	p.H244R	0.009	tigrfam_LipoylTrfase_LipoateP_Ligase	pfam_BPL_LipA_LipB,tigrfam_LipoylTrfase_LipoateP_Ligase	-	no_errors	LIPT1	HGNC	ENSG00000144182				82	0	0	46	23	33.3333
LYG2	0	genome.wustl.edu	37	2	99858912	99858912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	99858912	99858912	G	A	SNP	LYG2	ENST00000333017	human	ensembl	74_37	-1	known	missense	c.554	p.A185V	0.001	superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674				158	0	0	113	46	28.9308
LYG2	0	genome.wustl.edu	37	2	99860437	99860437	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	99860437	99860437	A	G	SNP	LYG2	ENST00000409679	human	ensembl	74_37	-1	putative	missense	c.545	p.V182A	0.034	NULL	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674				90	0	0	60	21	25.9259
ANKEF1	0	genome.wustl.edu	37	20	10025099	10025099	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	10025099	10025099	C	T	SNP	ANKEF1	ENST00000378380	human	ensembl	74_37	+1	known	nonsense	c.604	p.R202*	0.999	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EF_hand_dom,prints_Ankyrin_rpt	-	no_errors	ANKEF1	HGNC	ENSG00000132623				176	0	0	117	52	30.7692
JAG1	0	genome.wustl.edu	37	20	10626682	10626682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	10626682	10626682	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.1936	p.D646N	1.000	pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				191	0	0	95	54	36.2416
DEFB126	0	genome.wustl.edu	37	20	123301	123301	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	123301	123301	T	G	SNP	DEFB126	ENST00000382398	human	ensembl	74_37	+1	known	missense	c.32	p.F11C	0.002	NULL	NULL	-	no_errors	DEFB126	HGNC	ENSG00000125788				321	0	0	212	102	32.4841
DEFB126	0	genome.wustl.edu	37	20	123306	123306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	123306	123306	C	T	SNP	DEFB126	ENST00000382398	human	ensembl	74_37	+1	known	missense	c.37	p.L13F	0.008	NULL	NULL	-	no_errors	DEFB126	HGNC	ENSG00000125788				302	0	0	204	100	32.8947
TASP1	0	genome.wustl.edu	37	20	13561609	13561609	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	13561609	13561609	C	A	SNP	TASP1	ENST00000337743	human	ensembl	74_37	-1	known	silent	c.423	p.S141	0.962	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123				104	0	0	59	28	32.1839
SIRPG	0	genome.wustl.edu	37	20	1629814	1629814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	1629814	1629814	C	T	SNP	SIRPG	ENST00000303415	human	ensembl	74_37	-1	known	missense	c.314	p.R105H	0.969	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPG	HGNC	ENSG00000089012				231	0	0	102	45	30.6122
KIF16B	0	genome.wustl.edu	37	20	16348377	16348377	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	16348377	16348377	G	T	SNP	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	missense	c.3593	p.S1198Y	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				33	0	0	19	8	29.6296
SNRPB2	0	genome.wustl.edu	37	20	16717945	16717945	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	16717945	16717945	A	C	SNP	SNRPB2	ENST00000246071	human	ensembl	74_37	+1	known	missense	c.277	p.K93Q	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRPB2	HGNC	ENSG00000125870				32	0	0	28	16	36.3636
DEFB128	0	genome.wustl.edu	37	20	168744	168744	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	168744	168744	T	G	SNP	DEFB128	ENST00000334391	human	ensembl	74_37	-1	known	missense	c.65	p.K22T	0.132	NULL	NULL	-	no_errors	DEFB128	HGNC	ENSG00000185982				224	1	0.444444	133	74	35.7488
CSRP2BP	0	genome.wustl.edu	37	20	18142616	18142616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	18142616	18142616	G	A	SNP	CSRP2BP	ENST00000435364	human	ensembl	74_37	+1	known	missense	c.835	p.A279T	0.974	NULL	pfam_GNAT_dom,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	CSRP2BP	HGNC	ENSG00000149474				281	0	0	164	83	33.6032
POLR3F	0	genome.wustl.edu	37	20	18461089	18461089	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	18461089	18461089	G	T	SNP	POLR3F	ENST00000377603	human	ensembl	74_37	+1	known	missense	c.617	p.R206I	1.000	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	pfam_RNA_pol_Rpc34,pirsf_RNA_pol_Rpc34	-	no_errors	POLR3F	HGNC	ENSG00000132664				45	0	0	38	19	33.3333
PDYN	0	genome.wustl.edu	37	20	1961040	1961040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	1961040	1961040	G	A	SNP	PDYN	ENST00000217305	human	ensembl	74_37	-1	known	missense	c.694	p.R232C	1.000	NULL	pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept	-	no_errors	PDYN	HGNC	ENSG00000101327				270	0	0	126	67	34.715
ENSG00000232675	0	genome.wustl.edu	37	20	19674105	19674105	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	19674105	19674105	C	A	SNP	ENSG00000232675	ENST00000435992	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP4-718D20.3	Clone_based_vega_gene	ENSG00000232675				45	0	0	31	8	20.5128
NAA20	0	genome.wustl.edu	37	20	20007509	20007509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	20007509	20007509	G	A	SNP	NAA20	ENST00000334982	human	ensembl	74_37	+1	known	missense	c.251	p.R84Q	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418				210	0	0	124	50	28.7356
NAA20	0	genome.wustl.edu	37	20	20013155	20013155	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	20013155	20013155	G	A	SNP	NAA20	ENST00000334982	human	ensembl	74_37	+1	known	silent	c.309	p.K103	1.000	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA20	HGNC	ENSG00000173418				60	0	0	34	19	35.8491
C20orf26	0	genome.wustl.edu	37	20	20140041	20140041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	20140041	20140041	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.979	p.E327K	0.074	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				110	0	0	83	38	31.405
C20orf26	0	genome.wustl.edu	37	20	20322485	20322485	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	20322485	20322485	G	A	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	missense	c.3433	p.E1145K	0.981	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				68	0	0	36	14	28
DEFB129	0	genome.wustl.edu	37	20	207940	207940	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	207940	207940	T	G	SNP	DEFB129	ENST00000246105	human	ensembl	74_37	+1	known	missense	c.11	p.L4R	0.983	NULL	NULL	-	no_errors	DEFB129	HGNC	ENSG00000125903				183	0	0	94	40	29.8507
STK35	0	genome.wustl.edu	37	20	2097735	2097735	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2097735	2097735	C	T	SNP	STK35	ENST00000381482	human	ensembl	74_37	+1	known	missense	c.1316	p.A439V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK35	HGNC	ENSG00000125834				94	0	0	55	29	34.5238
CD93	0	genome.wustl.edu	37	20	23064997	23064997	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	23064997	23064997	C	T	SNP	CD93	ENST00000246006	human	ensembl	74_37	-1	known	silent	c.1833	p.A611	0.104	superfamily_MFS_dom_general_subst_transpt	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				243	0	0	127	59	31.7204
CST9	0	genome.wustl.edu	37	20	23584228	23584228	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	23584228	23584228	G	A	SNP	CST9	ENST00000376971	human	ensembl	74_37	-1	known	silent	c.399	p.V133	0.000	NULL	pfam_Prot_inh_cystat	-	no_errors	CST9	HGNC	ENSG00000173335				139	0	0	85	46	35.1145
CST3	0	genome.wustl.edu	37	20	23614628	23614628	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	23614628	23614628	G	A	SNP	CST3	ENST00000376925	human	ensembl	74_37	-1	known	silent	c.366	p.F122	0.863	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST3	HGNC	ENSG00000101439				88	0	0	38	27	41.5385
TGM6	0	genome.wustl.edu	37	20	2377260	2377260	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2377260	2377260	A	C	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.533	p.N178T	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				51	0	0	29	4	12.1212
TGM6	0	genome.wustl.edu	37	20	2411116	2411116	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2411116	2411116	C	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.1703	p.S568Y	0.982	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				124	0	0	87	27	23.6842
VSX1	0	genome.wustl.edu	37	20	25059430	25059430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	25059430	25059430	G	A	SNP	VSX1	ENST00000376707	human	ensembl	74_37	-1	known	missense	c.662	p.T221I	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	VSX1	HGNC	ENSG00000100987				278	0	0	174	64	26.8908
PYGB	0	genome.wustl.edu	37	20	25258996	25258996	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	25258996	25258996	C	T	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	silent	c.897	p.F299	0.982	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994				80	0	0	28	20	41.6667
TMC2	0	genome.wustl.edu	37	20	2604963	2604963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2604963	2604963	G	A	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.2227	p.D743N	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				130	0	0	67	36	34.9515
TMC2	0	genome.wustl.edu	37	20	2605002	2605002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2605002	2605002	G	A	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.2266	p.A756T	0.988	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				173	0	0	77	44	36.3636
NOP56	0	genome.wustl.edu	37	20	2633807	2633807	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	2633807	2633807	A	C	SNP	NOP56	ENST00000460258	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NOP56	HGNC	ENSG00000101361				59	0	0	32	14	30.4348
DEFB124	0	genome.wustl.edu	37	20	30060695	30060695	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30060695	30060695	T	C	SNP	DEFB124	ENST00000481595	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DEFB124	HGNC	ENSG00000180383				24	0	0	13	10	43.4783
REM1	0	genome.wustl.edu	37	20	30064492	30064492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30064492	30064492	C	T	SNP	REM1	ENST00000201979	human	ensembl	74_37	+1	known	missense	c.244	p.R82C	1.000	pirsf_Small_GTPase_GEM/REM/Rad,pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pirsf_Small_GTPase_GEM/REM/Rad,pfam_Small_GTPase,pfam_MIRO-like,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	REM1	HGNC	ENSG00000088320				78	0	0	38	17	30.9091
HM13	0	genome.wustl.edu	37	20	30137889	30137889	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30137889	30137889	T	G	SNP	HM13	ENST00000398174	human	ensembl	74_37	+1	known	missense	c.689	p.V230G	1.000	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	pfam_Peptidase_A22B_SPP,smart_Preselin/SPP	-	no_errors	HM13	HGNC	ENSG00000101294				296	1	0.3367	160	74	31.6239
TPX2	0	genome.wustl.edu	37	20	30366672	30366672	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30366672	30366672	G	T	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	missense	c.939	p.K313N	1.000	NULL	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325				176	0	0	89	47	34.5588
DUSP15	0	genome.wustl.edu	37	20	30452790	30452790	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30452790	30452790	G	A	SNP	DUSP15	ENST00000278979	human	ensembl	74_37	-1	known	missense	c.145	p.R49C	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	pfam_Dual-sp_phosphatase_cat-dom,superfamily_SMAD_FHA_domain,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP15	HGNC	ENSG00000149599				125	0	0	41	30	42.2535
TTLL9	0	genome.wustl.edu	37	20	30510818	30510818	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30510818	30510818	T	C	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.626	p.V209A	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				124	0	0	59	42	41.5842
TTLL9	0	genome.wustl.edu	37	20	30522582	30522582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30522582	30522582	G	A	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.895	p.D299N	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				149	0	0	79	38	32.4786
TTLL9	0	genome.wustl.edu	37	20	30526969	30526969	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30526969	30526969	C	T	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	silent	c.1143	p.V381	0.774	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				110	0	0	63	24	27.5862
PDRG1	0	genome.wustl.edu	37	20	30538170	30538170	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30538170	30538170	T	G	SNP	PDRG1	ENST00000202017	human	ensembl	74_37	-1	known	missense	c.108	p.K36N	0.998	pfam_PFD_beta-like,superfamily_Prefoldin	pfam_PFD_beta-like,superfamily_Prefoldin	-	no_errors	PDRG1	HGNC	ENSG00000088356				116	0	0	58	21	26.5823
KIF3B	0	genome.wustl.edu	37	20	30919089	30919089	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	30919089	30919089	T	G	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	silent	c.2211	p.L737	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350				100	0	0	62	18	22.5
FASTKD5	0	genome.wustl.edu	37	20	3127807	3127807	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3127807	3127807	T	G	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	missense	c.1910	p.K637T	0.759	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				168	0	0	59	31	34.4444
COMMD7	0	genome.wustl.edu	37	20	31292274	31292274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31292274	31292274	C	T	SNP	COMMD7	ENST00000278980	human	ensembl	74_37	-1	known	missense	c.445	p.E149K	0.990	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD7	HGNC	ENSG00000149600				22	0	0	12	5	29.4118
BPIFB3	0	genome.wustl.edu	37	20	31652621	31652621	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31652621	31652621	C	T	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	silent	c.894	p.G298	0.878	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190				83	0	0	47	18	27.6923
BPIFB3	0	genome.wustl.edu	37	20	31656729	31656729	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31656729	31656729	C	T	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	silent	c.1099	p.L367	0.132	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190				114	0	0	45	22	32.8358
BPIFA2	0	genome.wustl.edu	37	20	31756955	31756955	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31756955	31756955	C	A	SNP	BPIFA2	ENST00000253362	human	ensembl	74_37	+1	known	missense	c.4	p.L2I	0.965	NULL	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA2	HGNC	ENSG00000131050				201	0	0	113	63	35.7955
BPIFA2	0	genome.wustl.edu	37	20	31760789	31760789	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31760789	31760789	C	T	SNP	BPIFA2	ENST00000253362	human	ensembl	74_37	+1	known	missense	c.209	p.A70V	0.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA2	HGNC	ENSG00000131050				107	0	0	45	17	27.4194
BPIFA1	0	genome.wustl.edu	37	20	31829266	31829266	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31829266	31829266	T	G	SNP	BPIFA1	ENST00000354297	human	ensembl	74_37	+1	known	silent	c.657	p.V219	0.053	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom	-	no_errors	BPIFA1	HGNC	ENSG00000198183				301	0	0	128	85	39.9061
BPIFB1	0	genome.wustl.edu	37	20	31879790	31879790	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	31879790	31879790	A	G	SNP	BPIFB1	ENST00000253354	human	ensembl	74_37	+1	known	missense	c.593	p.N198S	0.000	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_PLUNC_long_form	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,pirsf_PLUNC_long_form	-	no_errors	BPIFB1	HGNC	ENSG00000125999				119	0	0	47	23	32.8571
SLC4A11	0	genome.wustl.edu	37	20	3211414	3211414	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3211414	3211414	G	T	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	missense	c.1375	p.L459M	0.914	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				89	0	0	29	22	43.1373
ACTL10	0	genome.wustl.edu	37	20	32255772	32255772	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	32255772	32255772	A	G	SNP	ACTL10	ENST00000330271	human	ensembl	74_37	+1	putative	missense	c.469	p.T157A	0.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTL10	HGNC	ENSG00000182584				9	0	0	6	3	33.3333
ZNF341	0	genome.wustl.edu	37	20	32371624	32371624	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	32371624	32371624	C	A	SNP	ZNF341	ENST00000375200	human	ensembl	74_37	+1	known	missense	c.1806	p.F602L	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF341	HGNC	ENSG00000131061				120	0	0	58	35	37.6344
RALY	0	genome.wustl.edu	37	20	32660006	32660006	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	32660006	32660006	C	T	SNP	RALY	ENST00000246194	human	ensembl	74_37	+1	known	silent	c.126	p.F42	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970				128	0	0	75	15	16.6667
EIF2S2	0	genome.wustl.edu	37	20	32677684	32677684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	32677684	32677684	C	T	SNP	EIF2S2	ENST00000374980	human	ensembl	74_37	-1	known	missense	c.854	p.R285Q	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	-	no_errors	EIF2S2	HGNC	ENSG00000125977				155	0	0	86	37	30.0813
C20orf194	0	genome.wustl.edu	37	20	3274887	3274887	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3274887	3274887	G	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.2136	p.F712	0.166	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				73	0	0	37	25	40.3226
C20orf194	0	genome.wustl.edu	37	20	3306889	3306889	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3306889	3306889	A	C	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.1143	p.V381	0.993	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				99	0	0	61	26	29.8851
C20orf194	0	genome.wustl.edu	37	20	3340185	3340185	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3340185	3340185	G	T	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	missense	c.668	p.S223Y	0.997	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				71	0	0	47	30	38.961
GSS	0	genome.wustl.edu	37	20	33516680	33516680	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	33516680	33516680	C	T	SNP	GSS	ENST00000216951	human	ensembl	74_37	-1	known	missense	c.1376	p.G459D	1.000	pfam_Glutathione_synthase_euk,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	pfam_Glutathione_synthase_euk,pfam_Glutathione_synth_subst-bd_euk,superfamily_PreATP-grasp_dom,pirsf_Glutathione_synthase_euk,tigrfam_Glutathione_synthase_euk	-	no_errors	GSS	HGNC	ENSG00000100983				109	0	0	41	31	43.0556
EDEM2	0	genome.wustl.edu	37	20	33703611	33703611	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	33703611	33703611	G	A	SNP	EDEM2	ENST00000374492	human	ensembl	74_37	-1	known	silent	c.1362	p.F454	0.651	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM2	HGNC	ENSG00000088298				95	0	0	49	26	34.6667
EIF6	0	genome.wustl.edu	37	20	33868540	33868540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	33868540	33868540	G	A	SNP	EIF6	ENST00000374436	human	ensembl	74_37	-1	known	missense	c.286	p.R96W	1.000	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	pfam_eIF6,smart_eIF6,pirsf_eIF6,tigrfam_eIF6	-	no_errors	EIF6	HGNC	ENSG00000242372				45	0	0	21	15	41.6667
CEP250	0	genome.wustl.edu	37	20	34054861	34054861	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34054861	34054861	G	A	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.563	p.R188Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				86	0	0	50	36	41.8605
CEP250	0	genome.wustl.edu	37	20	34099337	34099337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34099337	34099337	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.7211	p.A2404V	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				72	0	0	43	19	30.6452
SPAG4	0	genome.wustl.edu	37	20	34206049	34206049	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34206049	34206049	G	A	SNP	SPAG4	ENST00000374273	human	ensembl	74_37	+1	known	silent	c.579	p.E193	0.997	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SPAG4	HGNC	ENSG00000061656				45	0	0	25	11	30.5556
CPNE1	0	genome.wustl.edu	37	20	34220780	34220780	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34220780	34220780	G	A	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	silent	c.81	p.I27	0.925	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078				141	0	0	64	35	35.3535
RBM12	0	genome.wustl.edu	37	20	34241148	34241148	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34241148	34241148	A	G	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	silent	c.2097	p.S699	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				144	0	0	89	36	28.8
RBM39	0	genome.wustl.edu	37	20	34292287	34292287	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34292287	34292287	T	G	SNP	RBM39	ENST00000476806	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RBM39	HGNC	ENSG00000131051				21	0	0	14	3	17.6471
RBM39	0	genome.wustl.edu	37	20	34297096	34297096	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	34297096	34297096	T	G	SNP	RBM39	ENST00000475651	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.059	-	-	-	no_errors	RBM39	HGNC	ENSG00000131051				54	0	0	42	14	25
SOGA1	0	genome.wustl.edu	37	20	35437145	35437145	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	35437145	35437145	A	C	SNP	SOGA1	ENST00000237536	human	ensembl	74_37	-1	known	missense	c.2585	p.L862R	1.000	NULL	pfam_SOGA	-	no_errors	SOGA1	HGNC	ENSG00000149639				10	0	0	9	9	50
SAMHD1	0	genome.wustl.edu	37	20	35539642	35539642	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	35539642	35539642	C	A	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	nonsense	c.1249	p.E417*	1.000	NULL	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				118	0	0	71	57	44.5312
TTI1	0	genome.wustl.edu	37	20	36641180	36641180	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	36641180	36641180	T	G	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.1039	p.I347L	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				224	0	0	112	72	39.1304
TGM2	0	genome.wustl.edu	37	20	36758717	36758717	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	36758717	36758717	C	T	SNP	TGM2	ENST00000361475	human	ensembl	74_37	-1	known	silent	c.1968	p.P656	0.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM2	HGNC	ENSG00000198959				19	0	0	10	3	23.0769
SIGLEC1	0	genome.wustl.edu	37	20	3677393	3677393	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	3677393	3677393	A	G	SNP	SIGLEC1	ENST00000344754	human	ensembl	74_37	-1	known	silent	c.2523	p.G841	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC1	HGNC	ENSG00000088827				121	0	0	65	22	25.2874
BPI	0	genome.wustl.edu	37	20	36932692	36932692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	36932692	36932692	G	A	SNP	BPI	ENST00000262865	human	ensembl	74_37	+1	known	missense	c.79	p.A27T	0.016	NULL	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPI	HGNC	ENSG00000101425				105	0	0	55	34	38.2022
RALGAPB	0	genome.wustl.edu	37	20	37174905	37174905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	37174905	37174905	G	A	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.2734	p.A912T	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				132	0	0	59	44	42.7184
ACTR5	0	genome.wustl.edu	37	20	37383680	37383680	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	37383680	37383680	G	A	SNP	ACTR5	ENST00000243903	human	ensembl	74_37	+1	known	missense	c.856	p.G286S	0.995	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR5	HGNC	ENSG00000101442				95	0	0	45	25	35.7143
DHX35	0	genome.wustl.edu	37	20	37632517	37632517	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	37632517	37632517	A	C	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.978	p.K326N	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				185	0	0	102	65	38.9222
DHX35	0	genome.wustl.edu	37	20	37647465	37647465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	37647465	37647465	G	A	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.1421	p.R474H	0.895	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				212	0	0	123	74	37.5635
DHX35	0	genome.wustl.edu	37	20	37652368	37652368	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	37652368	37652368	C	T	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	silent	c.1629	p.G543	0.977	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452				103	0	0	48	26	35.1351
TOP1	0	genome.wustl.edu	37	20	39709828	39709828	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	39709828	39709828	T	A	SNP	TOP1	ENST00000361337	human	ensembl	74_37	+1	known	missense	c.455	p.I152N	1.000	NULL	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1	HGNC	ENSG00000198900				51	0	0	46	22	32.3529
ZHX3	0	genome.wustl.edu	37	20	39833469	39833469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	39833469	39833469	C	T	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.88	p.A30T	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				99	0	0	48	25	34.2466
LPIN3	0	genome.wustl.edu	37	20	39978806	39978806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	39978806	39978806	G	A	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	missense	c.871	p.V291M	0.205	NULL	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				33	0	0	26	14	35
LPIN3	0	genome.wustl.edu	37	20	39986541	39986541	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	39986541	39986541	T	G	SNP	LPIN3	ENST00000373257	human	ensembl	74_37	+1	known	missense	c.2059	p.Y687D	1.000	pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2	pfam_LNS2,pfam_Lipin_N,superfamily_HAD-like_dom,smart_LNS2	-	no_errors	LPIN3	HGNC	ENSG00000132793				114	0	0	51	27	34.6154
EMILIN3	0	genome.wustl.edu	37	20	39991292	39991292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	39991292	39991292	C	T	SNP	EMILIN3	ENST00000332312	human	ensembl	74_37	-1	known	missense	c.917	p.R306Q	0.000	NULL	pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMILIN3	HGNC	ENSG00000183798				46	0	0	12	12	50
PTPRT	0	genome.wustl.edu	37	20	40713337	40713337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	40713337	40713337	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.4178	p.T1393I	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				46	0	0	28	8	22.2222
PTPRT	0	genome.wustl.edu	37	20	40911144	40911144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	40911144	40911144	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.2161	p.R721C	0.969	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				111	0	0	79	31	28.1818
PTPRT	0	genome.wustl.edu	37	20	41306583	41306583	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	41306583	41306583	C	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.1076	p.R359Q	0.998	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				152	0	0	90	57	38.7755
MYBL2	0	genome.wustl.edu	37	20	42331534	42331534	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	42331534	42331534	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	74_37	+1	known	silent	c.1356	p.S452	0.088	pfam_C-myb_C	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057				101	0	0	48	16	25
TOX2	0	genome.wustl.edu	37	20	42680169	42680169	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	42680169	42680169	C	T	SNP	TOX2	ENST00000341197	human	ensembl	74_37	+1	known	missense	c.635	p.S212L	0.982	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX2	HGNC	ENSG00000124191				78	0	0	33	14	29.7872
HNF4A	0	genome.wustl.edu	37	20	43057088	43057088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	43057088	43057088	G	A	SNP	HNF4A	ENST00000316099	human	ensembl	74_37	+1	known	missense	c.1243	p.G415R	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoid-X_rcpt/HNF4	-	no_errors	HNF4A	HGNC	ENSG00000101076				52	0	0	35	11	23.913
RBPJL	0	genome.wustl.edu	37	20	43940866	43940866	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	43940866	43940866	C	T	SNP	RBPJL	ENST00000343694	human	ensembl	74_37	+1	known	silent	c.450	p.F150	0.997	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJL	HGNC	ENSG00000124232				112	0	0	40	23	36.5079
TP53TG5	0	genome.wustl.edu	37	20	44003970	44003970	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	44003970	44003970	A	C	SNP	TP53TG5	ENST00000372726	human	ensembl	74_37	-1	known	silent	c.477	p.V159	0.004	NULL	NULL	-	no_errors	TP53TG5	HGNC	ENSG00000124251				273	0	0	182	12	6.18557
WFDC8	0	genome.wustl.edu	37	20	44180804	44180804	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	44180804	44180804	A	C	SNP	WFDC8	ENST00000289953	human	ensembl	74_37	-1	known	missense	c.587	p.V196G	0.120	superfamily_WAP-type_4-diS_core	pfam_WAP-type_4-diS_core,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m,prints_WAP-type_4-diS_core	-	no_errors	WFDC8	HGNC	ENSG00000158901				110	0	0	75	28	27.1845
WFDC10A	0	genome.wustl.edu	37	20	44259601	44259601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	44259601	44259601	G	A	SNP	WFDC10A	ENST00000372643	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	1.000	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core	pfam_WAP-type_4-diS_core,superfamily_WAP-type_4-diS_core	-	no_errors	WFDC10A	HGNC	ENSG00000180305				66	0	0	52	16	23.5294
ZSWIM1	0	genome.wustl.edu	37	20	44512035	44512035	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	44512035	44512035	C	A	SNP	ZSWIM1	ENST00000372520	human	ensembl	74_37	+1	known	missense	c.804	p.F268L	1.000	NULL	pfam_Znf_SWIM,pfscan_Znf_SWIM	-	no_errors	ZSWIM1	HGNC	ENSG00000168612				196	0	0	80	39	32.7731
PCIF1	0	genome.wustl.edu	37	20	44569552	44569552	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	44569552	44569552	G	A	SNP	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	silent	c.492	p.Q164	1.000	NULL	pfam_PCIF1_WW,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PCIF1	HGNC	ENSG00000100982				154	0	0	89	39	30.4688
ZNF334	0	genome.wustl.edu	37	20	45129982	45129982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	45129982	45129982	G	A	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	missense	c.1996	p.R666C	0.174	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				104	0	0	89	47	34.5588
ZNF334	0	genome.wustl.edu	37	20	45131024	45131024	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	45131024	45131024	C	T	SNP	ZNF334	ENST00000347606	human	ensembl	74_37	-1	known	silent	c.954	p.E318	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF334	HGNC	ENSG00000198185				217	0	0	124	59	32.2404
ZMYND8	0	genome.wustl.edu	37	20	45912344	45912344	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	45912344	45912344	T	G	SNP	ZMYND8	ENST00000536340	human	ensembl	74_37	-1	known	missense	c.874	p.K292Q	1.000	superfamily_Bromodomain	pfam_DUF3544,pfam_Bromodomain,pfam_PWWP_dom,pfam_Znf_PHD-finger,pfam_Znf_MYND,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND8	HGNC	ENSG00000101040				62	0	0	35	23	39.6552
NCOA3	0	genome.wustl.edu	37	20	46264088	46264088	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	46264088	46264088	A	G	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.1135	p.N379D	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				115	0	0	57	21	26.9231
PRND	0	genome.wustl.edu	37	20	4705395	4705395	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	4705395	4705395	C	T	SNP	PRND	ENST00000305817	human	ensembl	74_37	+1	known	silent	c.198	p.L66	0.000	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864				64	0	0	22	20	47.619
ARFGEF2	0	genome.wustl.edu	37	20	47588912	47588912	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	47588912	47588912	C	A	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.1475	p.S492Y	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				89	0	0	49	26	34.6667
STAU1	0	genome.wustl.edu	37	20	47734395	47734395	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	47734395	47734395	G	T	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	silent	c.1428	p.I476	1.000	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				157	0	0	80	55	40.7407
STAU1	0	genome.wustl.edu	37	20	47782660	47782660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	47782660	47782660	G	A	SNP	STAU1	ENST00000371856	human	ensembl	74_37	-1	known	missense	c.79	p.L27F	0.997	NULL	pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STAU1	HGNC	ENSG00000124214				165	0	0	86	40	31.746
DDX27	0	genome.wustl.edu	37	20	47851485	47851485	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	47851485	47851485	G	T	SNP	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	missense	c.1380	p.R460S	0.964	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				76	0	0	42	14	25
ZNFX1	0	genome.wustl.edu	37	20	47886956	47886956	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	47886956	47886956	G	T	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.1393	p.L465I	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				241	0	0	118	58	32.9545
CSNK2A1	0	genome.wustl.edu	37	20	480539	480539	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	480539	480539	A	C	SNP	CSNK2A1	ENST00000217244	human	ensembl	74_37	-1	known	missense	c.253	p.L85V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK2A1	HGNC	ENSG00000101266				226	0	0	122	65	34.7594
KCNG1	0	genome.wustl.edu	37	20	49626348	49626348	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	49626348	49626348	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	silent	c.528	p.F176	0.996	superfamily_BTB/POZ_fold	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				130	0	0	57	30	34.4828
KCNG1	0	genome.wustl.edu	37	20	49626531	49626531	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	49626531	49626531	G	T	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.345	p.F115L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				70	0	0	29	24	45.283
ZNF217	0	genome.wustl.edu	37	20	52199171	52199171	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	52199171	52199171	C	T	SNP	ZNF217	ENST00000302342	human	ensembl	74_37	-1	known	silent	c.195	p.L65	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF217	HGNC	ENSG00000171940				199	0	0	114	59	34.104
CYP24A1	0	genome.wustl.edu	37	20	52773812	52773812	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	52773812	52773812	T	C	SNP	CYP24A1	ENST00000216862	human	ensembl	74_37	-1	known	missense	c.1451	p.D484G	0.053	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_CYP24A_mit,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP24A1	HGNC	ENSG00000019186				45	0	0	20	11	35.4839
DOK5	0	genome.wustl.edu	37	20	53171512	53171512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	53171512	53171512	G	A	SNP	DOK5	ENST00000262593	human	ensembl	74_37	+1	known	missense	c.107	p.S36N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK5	HGNC	ENSG00000101134				65	0	0	41	21	33.871
CASS4	0	genome.wustl.edu	37	20	55027827	55027827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55027827	55027827	A	G	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.1595	p.E532G	0.770	pfam_Serine_rich	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				93	0	0	52	25	32.4675
FAM209B	0	genome.wustl.edu	37	20	55108530	55108530	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55108530	55108530	C	T	SNP	FAM209B	ENST00000371325	human	ensembl	74_37	+1	known	missense	c.133	p.R45W	0.071	NULL	NULL	-	no_errors	FAM209B	HGNC	ENSG00000213714				226	0	0	100	59	37.1069
FAM209B	0	genome.wustl.edu	37	20	55108640	55108640	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55108640	55108640	G	T	SNP	FAM209B	ENST00000371325	human	ensembl	74_37	+1	known	missense	c.243	p.K81N	0.415	NULL	NULL	-	no_errors	FAM209B	HGNC	ENSG00000213714				168	0	0	86	38	30.6452
BMP7	0	genome.wustl.edu	37	20	55758796	55758796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55758796	55758796	G	A	SNP	BMP7	ENST00000395863	human	ensembl	74_37	-1	known	missense	c.940	p.R314W	0.982	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP7	HGNC	ENSG00000101144				128	0	0	60	34	36.1702
BMP7	0	genome.wustl.edu	37	20	55840835	55840835	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55840835	55840835	C	T	SNP	BMP7	ENST00000395863	human	ensembl	74_37	-1	known	missense	c.344	p.G115D	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP7	HGNC	ENSG00000101144				26	0	0	11	8	42.1053
SPO11	0	genome.wustl.edu	37	20	55904928	55904928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	55904928	55904928	C	T	SNP	SPO11	ENST00000371263	human	ensembl	74_37	+1	known	missense	c.5	p.A2V	1.000	pfam_Meiosis_Spo11,prints_Meiotic_Spo11	pfam_Meiosis_Spo11,pfam_Spo11/TopoVI_A_N,superfamily_Spo11/TopoVI_A,prints_Meiotic_Spo11,prints_Spo11/TopoVI_A,prints_TopoVI_A	-	no_errors	SPO11	HGNC	ENSG00000054796				64	0	0	23	15	39.4737
PCK1	0	genome.wustl.edu	37	20	56139347	56139347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	56139347	56139347	G	A	SNP	PCK1	ENST00000319441	human	ensembl	74_37	+1	known	missense	c.1084	p.E362K	0.987	pfam_PEP_carboxykinase_GTP,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK1	HGNC	ENSG00000124253				118	0	0	50	23	31.5068
GNAS	0	genome.wustl.edu	37	20	57428544	57428544	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	57428544	57428544	G	T	SNP	GNAS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.224	p.R75I	0.001	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				41	0	0	23	18	43.9024
GNAS	0	genome.wustl.edu	37	20	57429085	57429085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	57429085	57429085	C	T	SNP	GNAS	ENST00000306120	human	ensembl	74_37	+1	putative	missense	c.575	p.S192L	0.000	NULL	NULL	-	no_errors	GNAS	HGNC	ENSG00000087460				35	0	0	10	6	37.5
NELFCD	0	genome.wustl.edu	37	20	57568761	57568761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	57568761	57568761	G	A	SNP	NELFCD	ENST00000602795	human	ensembl	74_37	+1	known	missense	c.1577	p.R526Q	1.000	pfam_TH1	pfam_TH1	-	no_errors	NELFCD	HGNC	ENSG00000101158				175	0	0	80	52	39.3939
PHACTR3	0	genome.wustl.edu	37	20	58411601	58411601	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	58411601	58411601	G	T	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	missense	c.1370	p.R457I	1.000	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				52	0	0	43	20	31.746
SYCP2	0	genome.wustl.edu	37	20	58452530	58452530	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	58452530	58452530	T	G	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	missense	c.3060	p.K1020N	0.001	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				45	0	0	46	25	35.2113
SYCP2	0	genome.wustl.edu	37	20	58467111	58467111	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	58467111	58467111	A	G	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	silent	c.2298	p.S766	0.001	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				59	0	0	55	22	28.5714
SYCP2	0	genome.wustl.edu	37	20	58476794	58476794	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	58476794	58476794	C	A	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	nonsense	c.1105	p.E369*	0.439	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				65	0	0	56	19	25.3333
CDH26	0	genome.wustl.edu	37	20	58544061	58544061	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	58544061	58544061	C	A	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.109	p.L37I	0.001	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				69	0	0	60	36	37.5
CHGB	0	genome.wustl.edu	37	20	5904101	5904101	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	5904101	5904101	G	T	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	missense	c.1311	p.E437D	0.815	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				173	0	0	92	39	29.771
MCM8	0	genome.wustl.edu	37	20	5943947	5943947	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	5943947	5943947	T	C	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.817	p.S273P	0.999	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				96	0	0	51	32	38.5542
CDH4	0	genome.wustl.edu	37	20	60503305	60503305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	60503305	60503305	A	G	SNP	CDH4	ENST00000360469	human	ensembl	74_37	+1	known	missense	c.1829	p.D610G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH4	HGNC	ENSG00000179242				358	0	0	154	64	29.3578
SLCO4A1	0	genome.wustl.edu	37	20	61299452	61299452	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	61299452	61299452	G	T	SNP	SLCO4A1	ENST00000497209	human	ensembl	74_37	+1	known	nonsense	c.1828	p.E610*	0.511	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO4A1	HGNC	ENSG00000101187				151	0	0	63	44	41.1215
TCFL5	0	genome.wustl.edu	37	20	61491643	61491643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	61491643	61491643	C	T	SNP	TCFL5	ENST00000335351	human	ensembl	74_37	-1	known	missense	c.665	p.R222Q	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TCFL5	HGNC	ENSG00000101190				98	0	0	53	26	32.9114
DIDO1	0	genome.wustl.edu	37	20	61513394	61513394	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	61513394	61513394	G	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.3914	p.S1305L	0.173	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				243	1	0.409836	139	67	32.5243
COL20A1	0	genome.wustl.edu	37	20	61936897	61936897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	61936897	61936897	C	T	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.322	p.R108W	0.868	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				30	0	0	7	8	53.3333
CHRNA4	0	genome.wustl.edu	37	20	61981912	61981912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	61981912	61981912	G	A	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	missense	c.851	p.S284L	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				143	0	0	54	34	38.6364
UCKL1	0	genome.wustl.edu	37	20	62572374	62572374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62572374	62572374	C	T	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	missense	c.1045	p.E349K	1.000	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				56	0	0	25	7	21.875
ZNF512B	0	genome.wustl.edu	37	20	62595509	62595509	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62595509	62595509	G	A	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	silent	c.1395	p.G465	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				252	0	0	95	44	31.6547
PRPF6	0	genome.wustl.edu	37	20	62624781	62624781	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62624781	62624781	A	C	SNP	PRPF6	ENST00000266079	human	ensembl	74_37	+1	known	missense	c.381	p.E127D	0.998	pfam_PRP1_N	pfam_PRP1_N,smart_HAT,smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRPF6	HGNC	ENSG00000101161				67	0	0	49	31	38.75
LINC00176	0	genome.wustl.edu	37	20	62669793	62669793	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62669793	62669793	C	T	SNP	LINC00176	ENST00000358393	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00176	HGNC	ENSG00000196421				26	0	0	17	11	39.2857
MYT1	0	genome.wustl.edu	37	20	62831255	62831255	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62831255	62831255	G	T	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	missense	c.66	p.E22D	0.738	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				204	0	0	46	74	61.6667
MYT1	0	genome.wustl.edu	37	20	62837075	62837075	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	62837075	62837075	G	T	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	nonsense	c.319	p.E107*	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				78	0	0	16	46	74.1935
PLCB1	0	genome.wustl.edu	37	20	8769159	8769159	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	8769159	8769159	G	C	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	missense	c.3175	p.E1059Q	1.000	pirsf_PLC-beta,pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				25	0	0	35	2	5.40541
PLCB1	0	genome.wustl.edu	37	20	8862337	8862337	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	8862337	8862337	C	T	SNP	PLCB1	ENST00000338037	human	ensembl	74_37	+1	known	silent	c.3492	p.F1164	0.114	pfam_PLC-beta_C	pirsf_PLC-beta,pfam_PLC-beta_C,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB1	HGNC	ENSG00000182621				268	0	0	155	93	37.5
PLCB4	0	genome.wustl.edu	37	20	9370547	9370547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	9370547	9370547	G	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.1180	p.E394K	1.000	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				85	0	0	59	20	25.3165
PLCB4	0	genome.wustl.edu	37	20	9402103	9402103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	9402103	9402103	C	T	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2278	p.R760W	1.000	pirsf_PLC-beta,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				85	0	0	64	28	30.4348
PLCB4	0	genome.wustl.edu	37	20	9424868	9424868	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	9424868	9424868	C	A	SNP	PLCB4	ENST00000334005	human	ensembl	74_37	+1	known	missense	c.2822	p.S941Y	1.000	pirsf_PLC-beta,pfam_PLC-beta_CS	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_PLC-beta_CS,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB4	HGNC	ENSG00000101333				69	0	0	38	25	39.6825
IGHV1OR21-1	0	genome.wustl.edu	37	21	10862772	10862772	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	10862772	10862772	T	G	SNP	IGHV1OR21-1	ENST00000559480	human	ensembl	74_37	+1	known	missense	c.68	p.L23R	1.000	pfam_Ig_V-set,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGHV1OR21-1	HGNC	ENSG00000169861				563	0	0	429	49	10.251
TPTE	0	genome.wustl.edu	37	21	10951415	10951415	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	10951415	10951415	A	C	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	silent	c.297	p.V99	0.027	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				134	0	0	121	24	16.5517
TPTE	0	genome.wustl.edu	37	21	10998235	10998235	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	10998235	10998235	T	G	SNP	TPTE	ENST00000415664	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157				157	0	0	133	25	15.8228
TPTE	0	genome.wustl.edu	37	21	11020823	11020823	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	11020823	11020823	A	G	SNP	TPTE	ENST00000415664	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157				253	0	0	205	40	16.3265
BAGE2	0	genome.wustl.edu	37	21	11049620	11049620	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	11049620	11049620	C	T	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				399	0	0	329	18	5.18732
ANKRD20A11P	0	genome.wustl.edu	37	21	15297554	15297554	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	15297554	15297554	G	A	SNP	ANKRD20A11P	ENST00000442192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559				45	0	0	45	21	31.8182
ANKRD20A11P	0	genome.wustl.edu	37	21	15352252	15352252	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	15352252	15352252	A	G	SNP	ANKRD20A11P	ENST00000344693	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ANKRD20A11P	HGNC	ENSG00000215559				15	0	0	6	9	60
SAMSN1	0	genome.wustl.edu	37	21	15893519	15893519	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	15893519	15893519	G	A	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	silent	c.81	p.F27	1.000	pfam_rSAM/SH3_domain-containing	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				36	0	0	20	15	42.8571
NRIP1	0	genome.wustl.edu	37	21	16337265	16337265	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	16337265	16337265	T	G	SNP	NRIP1	ENST00000318948	human	ensembl	74_37	-1	known	missense	c.3249	p.E1083D	0.991	NULL	NULL	-	no_errors	NRIP1	HGNC	ENSG00000180530				227	0	0	137	79	36.5741
TMPRSS15	0	genome.wustl.edu	37	21	19653432	19653432	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	19653432	19653432	T	G	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.2593	p.N865H	0.992	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				209	0	0	132	71	34.9754
TMPRSS15	0	genome.wustl.edu	37	21	19670096	19670096	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	19670096	19670096	A	G	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	missense	c.2216	p.V739A	0.969	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646				66	0	0	53	24	31.1688
NCAM2	0	genome.wustl.edu	37	21	22881337	22881337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	22881337	22881337	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2243	p.G748D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				75	0	0	57	21	26.9231
NCAM2	0	genome.wustl.edu	37	21	22910240	22910240	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	22910240	22910240	G	A	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2476	p.D826N	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				49	0	0	31	47	60.2564
ATP5J	0	genome.wustl.edu	37	21	27096989	27096989	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	27096989	27096989	C	T	SNP	ATP5J	ENST00000457143	human	ensembl	74_37	-1	known	splice_site	c.314-1	e4-1	1.000	-	-	-	no_errors	ATP5J	HGNC	ENSG00000154723				60	0	0	47	22	31.8841
ADAMTS5	0	genome.wustl.edu	37	21	28296687	28296687	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	28296687	28296687	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.2478	p.T826	0.001	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				199	0	0	102	55	35.0318
ADAMTS5	0	genome.wustl.edu	37	21	28327064	28327064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	28327064	28327064	C	T	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	missense	c.1231	p.E411K	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				110	0	0	61	25	29.0698
USP16	0	genome.wustl.edu	37	21	30419571	30419571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	30419571	30419571	G	A	SNP	USP16	ENST00000334352	human	ensembl	74_37	+1	known	missense	c.1940	p.R647Q	0.007	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP16	HGNC	ENSG00000156256				141	0	0	86	64	42.6667
USP16	0	genome.wustl.edu	37	21	30422460	30422460	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	30422460	30422460	A	C	SNP	USP16	ENST00000334352	human	ensembl	74_37	+1	known	missense	c.2154	p.E718D	0.975	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP16	HGNC	ENSG00000156256				56	0	0	34	26	43.3333
GRIK1	0	genome.wustl.edu	37	21	30925894	30925894	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	30925894	30925894	G	T	SNP	GRIK1	ENST00000309434	human	ensembl	74_37	-1	known	silent	c.2745	p.S915	0.999	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				76	0	0	60	24	28.5714
KRTAP24-1	0	genome.wustl.edu	37	21	31654595	31654595	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	31654595	31654595	C	T	SNP	KRTAP24-1	ENST00000340345	human	ensembl	74_37	-1	known	missense	c.656	p.R219Q	0.000	NULL	pfam_KRTAP_PMG	-	no_errors	KRTAP24-1	HGNC	ENSG00000188694				160	0	0	83	42	33.6
KRTAP27-1	0	genome.wustl.edu	37	21	31709589	31709589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	31709589	31709589	G	A	SNP	KRTAP27-1	ENST00000382835	human	ensembl	74_37	-1	known	missense	c.398	p.P133L	0.611	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP27-1	HGNC	ENSG00000206107				314	0	0	172	64	27.1186
KRTAP13-1	0	genome.wustl.edu	37	21	31768675	31768675	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	31768675	31768675	C	A	SNP	KRTAP13-1	ENST00000355459	human	ensembl	74_37	+1	known	missense	c.271	p.P91T	0.768	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-1	HGNC	ENSG00000198390				109	0	0	63	30	32.2581
KRTAP19-5	0	genome.wustl.edu	37	21	31874354	31874354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	31874354	31874354	C	T	SNP	KRTAP19-5	ENST00000334151	human	ensembl	74_37	-1	known	missense	c.55	p.D19N	0.003	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-5	HGNC	ENSG00000186977				254	0	0	144	66	31.4286
TIAM1	0	genome.wustl.edu	37	21	32519234	32519234	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	32519234	32519234	C	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.3454	p.V1152F	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				61	0	0	41	11	21.1538
TIAM1	0	genome.wustl.edu	37	21	32559358	32559358	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	32559358	32559358	T	C	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.2621	p.Y874C	0.319	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				259	0	0	125	71	36.2245
SCAF4	0	genome.wustl.edu	37	21	33068467	33068467	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	33068467	33068467	G	A	SNP	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	missense	c.1027	p.P343S	0.973	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				318	0	0	173	89	33.9695
SYNJ1	0	genome.wustl.edu	37	21	34058149	34058149	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34058149	34058149	T	G	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.1144	p.K382Q	1.000	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				70	0	0	56	38	40.4255
PAXBP1	0	genome.wustl.edu	37	21	34132150	34132150	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34132150	34132150	T	G	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	missense	c.1131	p.K377N	1.000	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086				192	0	0	114	61	34.8571
IL10RB	0	genome.wustl.edu	37	21	34652088	34652088	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34652088	34652088	A	C	SNP	IL10RB	ENST00000290200	human	ensembl	74_37	+1	known	missense	c.363	p.E121D	0.069	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646				179	0	0	128	58	31.1828
IFNAR1	0	genome.wustl.edu	37	21	34725189	34725189	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34725189	34725189	C	T	SNP	IFNAR1	ENST00000270139	human	ensembl	74_37	+1	known	silent	c.1269	p.D423	0.000	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,pirsf_Interferon_alpha/beta_rcpt-1	-	no_errors	IFNAR1	HGNC	ENSG00000142166				80	0	0	69	33	32.3529
SON	0	genome.wustl.edu	37	21	34922384	34922384	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34922384	34922384	T	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.847	p.S283T	0.046	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				161	0	0	88	39	30.7087
SON	0	genome.wustl.edu	37	21	34922611	34922611	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34922611	34922611	G	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.1074	p.P358	0.597	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				182	1	0.546448	88	49	35.7664
SON	0	genome.wustl.edu	37	21	34923451	34923451	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34923451	34923451	G	A	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.1914	p.A638	0.999	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				99	0	0	45	27	37.5
SON	0	genome.wustl.edu	37	21	34931566	34931566	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34931566	34931566	G	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.6352	p.D2118Y	1.000	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				96	0	0	52	51	49.5146
SON	0	genome.wustl.edu	37	21	34932295	34932295	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34932295	34932295	A	C	SNP	SON	ENST00000300278	human	ensembl	74_37	+1	known	missense	c.6770	p.K2257T	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	SON	HGNC	ENSG00000159140				106	0	0	55	16	22.5352
CRYZL1	0	genome.wustl.edu	37	21	34962116	34962116	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	34962116	34962116	G	A	SNP	CRYZL1	ENST00000445393	human	ensembl	74_37	-1	novel	missense	c.575	p.S192F	0.360	NULL	superfamily_GroES-like	-	no_errors	CRYZL1	HGNC	ENSG00000205758				28	0	0	17	9	34.6154
ITSN1	0	genome.wustl.edu	37	21	35127704	35127704	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	35127704	35127704	T	C	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	splice_site	c.724+2	e7+2	1.000	-	-	-	no_errors	ITSN1	HGNC	ENSG00000205726				55	0	0	34	12	26.087
ITSN1	0	genome.wustl.edu	37	21	35260458	35260458	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	35260458	35260458	T	G	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	missense	c.5020	p.F1674V	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726				115	0	0	48	42	46.6667
SLC5A3	0	genome.wustl.edu	37	21	35467556	35467556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	35467556	35467556	T	C	SNP	SLC5A3	ENST00000381151	human	ensembl	74_37	+1	known	missense	c.59	p.V20A	1.000	pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A3	HGNC	ENSG00000198743				174	0	0	101	49	32.6667
MIR802	0	genome.wustl.edu	37	21	37093076	37093076	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	37093076	37093076	C	A	SNP	MIR802	ENST00000390235	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR802	HGNC	ENSG00000211590				88	0	0	52	12	18.75
CBR3-AS1	0	genome.wustl.edu	37	21	37505070	37505070	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	37505070	37505070	T	G	SNP	CBR3-AS1	ENST00000413862	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.914	-	-	-	no_errors	CBR3-AS1	HGNC	ENSG00000236830				14	0	0	6	5	45.4545
DOPEY2	0	genome.wustl.edu	37	21	37603319	37603319	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	37603319	37603319	G	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.2237	p.R746H	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				152	0	0	65	34	34.3434
DOPEY2	0	genome.wustl.edu	37	21	37664487	37664487	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	37664487	37664487	C	A	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	missense	c.6601	p.P2201T	1.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197				161	0	0	66	34	34
MORC3	0	genome.wustl.edu	37	21	37741635	37741635	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	37741635	37741635	G	A	SNP	MORC3	ENST00000400485	human	ensembl	74_37	+1	known	missense	c.1969	p.D657N	0.976	NULL	pfam_Znf_CW,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC3	HGNC	ENSG00000159256				119	0	0	80	31	27.9279
TTC3	0	genome.wustl.edu	37	21	38494187	38494187	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38494187	38494187	A	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.971	p.K324T	0.984	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				63	0	0	45	25	35.7143
TTC3	0	genome.wustl.edu	37	21	38501357	38501357	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38501357	38501357	A	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.1352	p.K451T	0.817	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				53	0	0	45	18	28.5714
TTC3	0	genome.wustl.edu	37	21	38559387	38559387	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38559387	38559387	T	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.4864	p.Y1622H	0.001	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				38	0	0	28	15	34.8837
TTC3	0	genome.wustl.edu	37	21	38568259	38568259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38568259	38568259	C	T	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.5501	p.A1834V	0.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				66	0	0	48	24	33.3333
DYRK1A	0	genome.wustl.edu	37	21	38853084	38853084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38853084	38853084	C	T	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.472	p.R158C	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				100	0	0	71	26	26.8041
DYRK1A	0	genome.wustl.edu	37	21	38862486	38862486	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38862486	38862486	A	C	SNP	DYRK1A	ENST00000398960	human	ensembl	74_37	+1	known	missense	c.674	p.K225T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DYRK1A	HGNC	ENSG00000157540				73	0	0	47	22	31.8841
KCNJ6	0	genome.wustl.edu	37	21	38997769	38997769	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	38997769	38997769	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	nonsense	c.964	p.R322*	0.993	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				81	0	0	37	18	32.7273
KCNJ15	0	genome.wustl.edu	37	21	39671201	39671201	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	39671201	39671201	C	T	SNP	KCNJ15	ENST00000328656	human	ensembl	74_37	+1	known	silent	c.18	p.I6	0.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.3,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir1.1	-	no_errors	KCNJ15	HGNC	ENSG00000157551				87	0	0	52	34	39.5349
ERG	0	genome.wustl.edu	37	21	39755649	39755649	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	39755649	39755649	G	A	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	silent	c.1137	p.Y379	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				145	0	0	83	36	30.2521
ERG	0	genome.wustl.edu	37	21	39775557	39775557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	39775557	39775557	C	T	SNP	ERG	ENST00000398919	human	ensembl	74_37	-1	known	missense	c.484	p.V162I	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERG	HGNC	ENSG00000157554				120	0	0	67	26	27.957
ETS2	0	genome.wustl.edu	37	21	40189001	40189001	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	40189001	40189001	A	G	SNP	ETS2	ENST00000360214	human	ensembl	74_37	+1	known	missense	c.575	p.N192S	0.987	pirsf_Transform_prot_C-ets	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_Transform_prot_C-ets,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETS2	HGNC	ENSG00000157557				134	0	0	90	45	33.3333
LCA5L	0	genome.wustl.edu	37	21	40783699	40783699	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	40783699	40783699	G	A	SNP	LCA5L	ENST00000288350	human	ensembl	74_37	-1	known	silent	c.1005	p.N335	1.000	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578				52	0	0	41	19	31.6667
LCA5L	0	genome.wustl.edu	37	21	40800375	40800375	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	40800375	40800375	G	T	SNP	LCA5L	ENST00000288350	human	ensembl	74_37	-1	known	missense	c.45	p.F15L	0.033	NULL	NULL	-	no_errors	LCA5L	HGNC	ENSG00000157578				111	0	0	61	28	31.4607
SH3BGR	0	genome.wustl.edu	37	21	40834341	40834341	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	40834341	40834341	C	T	SNP	SH3BGR	ENST00000333634	human	ensembl	74_37	+1	known	missense	c.275	p.A92V	1.000	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437				79	0	0	74	25	25.2525
DSCAM	0	genome.wustl.edu	37	21	41559880	41559880	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	41559880	41559880	A	C	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.2588	p.F863C	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				87	0	0	40	25	38.4615
DSCAM	0	genome.wustl.edu	37	21	41684041	41684041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	41684041	41684041	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.2029	p.A677T	0.936	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				172	0	0	106	57	34.9693
DSCAM	0	genome.wustl.edu	37	21	41684283	41684283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	41684283	41684283	G	A	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.1787	p.P596L	0.999	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				38	0	0	18	9	33.3333
BACE2	0	genome.wustl.edu	37	21	42617914	42617914	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	42617914	42617914	A	G	SNP	BACE2	ENST00000330333	human	ensembl	74_37	+1	known	missense	c.908	p.D303G	1.000	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Aspartic_peptidase,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240				25	0	0	17	8	32
BACE2	0	genome.wustl.edu	37	21	42647372	42647372	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	42647372	42647372	G	A	SNP	BACE2	ENST00000330333	human	ensembl	74_37	+1	known	missense	c.1378	p.A460T	0.000	prints_Pept_A1_BACE2	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Pept_A1_BACE,prints_Pept_A1_BACE2,prints_Aspartic_peptidase,prints_Pept_A1_BACE1	-	no_errors	BACE2	HGNC	ENSG00000182240				104	0	0	65	29	30.8511
UMODL1	0	genome.wustl.edu	37	21	43531245	43531245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	43531245	43531245	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.1913	p.A638V	0.127	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				17	0	0	6	4	40
UMODL1	0	genome.wustl.edu	37	21	43533907	43533907	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	43533907	43533907	G	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	nonsense	c.2713	p.E905*	0.078	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				118	0	0	40	15	27.2727
ABCG1	0	genome.wustl.edu	37	21	43702514	43702514	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	43702514	43702514	T	C	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.1157	p.F386S	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				61	0	0	20	14	41.1765
ABCG1	0	genome.wustl.edu	37	21	43716283	43716283	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	43716283	43716283	C	T	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	silent	c.2256	p.F752	0.450	pfam_ABC_2_trans,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				76	0	0	55	24	30.3797
UBASH3A	0	genome.wustl.edu	37	21	43862610	43862610	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	43862610	43862610	T	G	SNP	UBASH3A	ENST00000319294	human	ensembl	74_37	+1	known	missense	c.1535	p.F512C	1.000	pfam_His_Pase_superF_clade-1	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185				149	0	0	76	52	40.625
PKNOX1	0	genome.wustl.edu	37	21	44444988	44444988	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	44444988	44444988	A	G	SNP	PKNOX1	ENST00000291547	human	ensembl	74_37	+1	known	missense	c.857	p.Y286C	1.000	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PKNOX1	HGNC	ENSG00000160199				107	0	0	50	27	35.0649
CBS	0	genome.wustl.edu	37	21	44488638	44488638	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	44488638	44488638	G	A	SNP	CBS	ENST00000398168	human	ensembl	74_37	-1	known	silent	c.297	p.F99	0.047	pfam_Trp_syn_b_sub_like_PLP_eny_SF,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,tigrfam_Cysta_beta_synth	pfam_Trp_syn_b_sub_like_PLP_eny_SF,pfam_CBS_dom,superfamily_Trp_syn_b_sub_like_PLP_eny_SF,smart_CBS_dom,tigrfam_Cysta_beta_synth	-	no_errors	CBS	HGNC	ENSG00000160200				109	0	0	46	25	35.2113
TRAPPC10	0	genome.wustl.edu	37	21	45504019	45504019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	45504019	45504019	C	T	SNP	TRAPPC10	ENST00000291574	human	ensembl	74_37	+1	known	missense	c.2255	p.T752M	0.998	NULL	NULL	-	no_errors	TRAPPC10	HGNC	ENSG00000160218				71	0	0	28	12	30
PWP2	0	genome.wustl.edu	37	21	45540313	45540313	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	45540313	45540313	G	A	SNP	PWP2	ENST00000291576	human	ensembl	74_37	+1	known	missense	c.1273	p.A425T	0.019	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SSU_processome_Utp12,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PWP2	HGNC	ENSG00000241945				240	0	0	116	59	33.7143
ENSG00000184441	0	genome.wustl.edu	37	21	45753196	45753196	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	45753196	45753196	G	T	SNP	ENSG00000184441	ENST00000448927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AP001062.7	Clone_based_vega_gene	ENSG00000184441				11	0	0	3	4	57.1429
LRRC3	0	genome.wustl.edu	37	21	45877213	45877213	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	45877213	45877213	A	G	SNP	LRRC3	ENST00000291592	human	ensembl	74_37	+1	known	missense	c.686	p.N229S	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3	HGNC	ENSG00000160233				124	0	0	85	5	5.55556
KRTAP10-4	0	genome.wustl.edu	37	21	45994370	45994370	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	45994370	45994370	G	T	SNP	KRTAP10-4	ENST00000400374	human	ensembl	74_37	+1	known	missense	c.735	p.E245D	0.001	NULL	NULL	-	no_errors	KRTAP10-4	HGNC	ENSG00000215454				319	0	0	134	52	27.957
KRTAP10-9	0	genome.wustl.edu	37	21	46047149	46047149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46047149	46047149	G	A	SNP	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	missense	c.61	p.D21N	1.000	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				170	1	0.584795	74	32	30.1887
KRTAP10-9	0	genome.wustl.edu	37	21	46047218	46047218	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46047218	46047218	A	G	SNP	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	missense	c.130	p.T44A	0.403	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837				196	0	0	80	56	41.1765
KRTAP12-4	0	genome.wustl.edu	37	21	46074227	46074227	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46074227	46074227	C	A	SNP	KRTAP12-4	ENST00000391618	human	ensembl	74_37	-1	known	missense	c.305	p.R102I	0.002	NULL	NULL	-	no_errors	KRTAP12-4	HGNC	ENSG00000212933				88	0	0	45	22	32.8358
KRTAP12-3	0	genome.wustl.edu	37	21	46078099	46078099	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46078099	46078099	C	A	SNP	KRTAP12-3	ENST00000397907	human	ensembl	74_37	+1	known	missense	c.203	p.P68H	0.883	NULL	NULL	-	no_errors	KRTAP12-3	HGNC	ENSG00000205439				154	0	0	106	36	25.3521
ITGB2	0	genome.wustl.edu	37	21	46309280	46309280	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46309280	46309280	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.1788	p.C596	0.784	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				74	0	0	20	18	47.3684
ITGB2	0	genome.wustl.edu	37	21	46321485	46321485	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46321485	46321485	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.663	p.V221	0.833	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255				117	0	0	54	36	40
ITGB2	0	genome.wustl.edu	37	21	46330639	46330639	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46330639	46330639	C	T	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	splice_site	c.58+1	e1+1	0.995	-	-	-	no_errors	ITGB2	HGNC	ENSG00000160255				32	0	0	13	8	38.0952
ADARB1	0	genome.wustl.edu	37	21	46624478	46624478	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46624478	46624478	T	C	SNP	ADARB1	ENST00000360697	human	ensembl	74_37	+1	known	missense	c.1694	p.V565A	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,superfamily_Cytokine_IL1-like,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB1	HGNC	ENSG00000197381				124	0	0	89	28	23.9316
POFUT2	0	genome.wustl.edu	37	21	46705505	46705505	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46705505	46705505	C	T	SNP	POFUT2	ENST00000476653	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	POFUT2	HGNC	ENSG00000186866				40	0	0	16	7	30.4348
COL18A1	0	genome.wustl.edu	37	21	46896386	46896386	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	46896386	46896386	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.2165	p.S722L	0.002	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				29	0	0	11	3	21.4286
PCBP3	0	genome.wustl.edu	37	21	47359992	47359992	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	47359992	47359992	C	T	SNP	PCBP3	ENST00000400314	human	ensembl	74_37	+1	known	nonsense	c.958	p.R320*	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570				163	0	0	56	32	36.3636
COL6A1	0	genome.wustl.edu	37	21	47424005	47424005	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	47424005	47424005	G	A	SNP	COL6A1	ENST00000486023	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL6A1	HGNC	ENSG00000142156				73	0	0	31	16	34.0426
MCM3AP	0	genome.wustl.edu	37	21	47704119	47704119	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	47704119	47704119	T	G	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	missense	c.1082	p.K361T	0.992	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				305	0	0	137	55	28.6458
YBEY	0	genome.wustl.edu	37	21	47706911	47706911	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	47706911	47706911	G	A	SNP	YBEY	ENST00000329319	human	ensembl	74_37	+1	known	silent	c.84	p.R28	0.000	pfam_YbeY	pfam_YbeY,tigrfam_YbeY	-	no_errors	YBEY	HGNC	ENSG00000182362				106	0	0	40	28	41.1765
PCNT	0	genome.wustl.edu	37	21	47848442	47848442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	21	47848442	47848442	G	A	SNP	PCNT	ENST00000359568	human	ensembl	74_37	+1	known	missense	c.7628	p.R2543H	0.957	NULL	pfam_PACT_domain	-	no_errors	PCNT	HGNC	ENSG00000160299				34	0	0	16	9	36
CCT8L2	0	genome.wustl.edu	37	22	17071789	17071789	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17071789	17071789	T	G	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.1652	p.K551T	0.000	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				158	0	0	99	36	26.6667
ANKRD62P1-PARP4P3	0	genome.wustl.edu	37	22	17140517	17140517	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17140517	17140517	A	G	SNP	ANKRD62P1-PARP4P3	ENST00000456726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ANKRD62P1-PARP4P3	HGNC	ENSG00000189295				51	0	0	29	21	42
GAB4	0	genome.wustl.edu	37	22	17447013	17447013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17447013	17447013	C	T	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	missense	c.1265	p.R422H	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				148	0	0	72	34	32.0755
GAB4	0	genome.wustl.edu	37	22	17447056	17447056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17447056	17447056	C	A	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	missense	c.1222	p.D408Y	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568				118	0	0	65	30	31.5789
CECR1	0	genome.wustl.edu	37	22	17662438	17662438	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17662438	17662438	T	G	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	missense	c.1471	p.N491H	0.001	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				318	0	0	157	76	32.618
CECR1	0	genome.wustl.edu	37	22	17662442	17662442	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17662442	17662442	C	T	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	silent	c.1467	p.E489	0.046	pfam_A/AMP_deaminase_dom,tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				304	0	0	147	74	33.4842
CECR2	0	genome.wustl.edu	37	22	17976436	17976436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	17976436	17976436	C	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.157	p.P53S	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				43	0	0	28	14	33.3333
CECR2	0	genome.wustl.edu	37	22	18028975	18028975	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	18028975	18028975	C	T	SNP	CECR2	ENST00000400573	human	ensembl	74_37	+1	novel	missense	c.3932	p.S1311L	0.927	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	CECR2	HGNC	ENSG00000099954				210	0	0	110	41	27.1523
ATP6V1E1	0	genome.wustl.edu	37	22	18095536	18095536	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	18095536	18095536	A	C	SNP	ATP6V1E1	ENST00000478963	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	ATP6V1E1	HGNC	ENSG00000131100				41	0	0	29	16	35.5556
MICAL3	0	genome.wustl.edu	37	22	18348745	18348745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	18348745	18348745	C	T	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.2462	p.R821Q	1.000	pfscan_Znf_LIM	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				80	0	0	31	10	24.3902
CLTCL1	0	genome.wustl.edu	37	22	19170998	19170998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	19170998	19170998	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.4732	p.R1578C	1.000	smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				100	0	0	39	21	35
CLTCL1	0	genome.wustl.edu	37	22	19203720	19203720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	19203720	19203720	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.2966	p.S989L	0.996	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				68	0	0	42	15	26.3158
CLTCL1	0	genome.wustl.edu	37	22	19221116	19221116	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	19221116	19221116	C	T	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	silent	c.1197	p.Q399	0.016	superfamily_ARM-type_fold,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371				63	0	0	59	9	13.2353
CLDN5	0	genome.wustl.edu	37	22	19511134	19511134	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	19511134	19511134	C	A	SNP	CLDN5	ENST00000403084	human	ensembl	74_37	-1	known	missense	c.900	p.K300N	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin5	-	no_errors	CLDN5	HGNC	ENSG00000184113				58	0	0	38	5	11.6279
TANGO2	0	genome.wustl.edu	37	22	20024483	20024483	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	20024483	20024483	C	T	SNP	TANGO2	ENST00000434570	human	ensembl	74_37	+1	known	silent	c.45	p.D15	0.000	NULL	pfam_DUF833	-	no_errors	TANGO2	HGNC	ENSG00000183597				106	0	0	46	23	33.3333
RIMBP3	0	genome.wustl.edu	37	22	20458539	20458539	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	20458539	20458539	C	T	SNP	RIMBP3	ENST00000426804	human	ensembl	74_37	-1	known	silent	c.2763	p.G921	0.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	RIMBP3	HGNC	ENSG00000196622				62	0	0	32	14	30.4348
ZNF74	0	genome.wustl.edu	37	22	20761251	20761251	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	20761251	20761251	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	missense	c.1928	p.R643Q	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				55	0	0	20	14	41.1765
KLHL22	0	genome.wustl.edu	37	22	20838275	20838275	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	20838275	20838275	C	T	SNP	KLHL22	ENST00000470335	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.985	-	-	-	no_errors	KLHL22	HGNC	ENSG00000099910				57	0	0	27	15	35.7143
PI4KA	0	genome.wustl.edu	37	22	21075682	21075682	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	21075682	21075682	G	A	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	silent	c.5020	p.L1674	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973				199	0	0	85	45	34.6154
CRKL	0	genome.wustl.edu	37	22	21288167	21288167	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	21288167	21288167	G	T	SNP	CRKL	ENST00000354336	human	ensembl	74_37	+1	known	missense	c.412	p.D138Y	1.000	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_2,pfam_SH2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH2,smart_SH3_domain,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	CRKL	HGNC	ENSG00000099942				160	0	0	89	60	40.2685
AIFM3	0	genome.wustl.edu	37	22	21327599	21327599	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	21327599	21327599	A	C	SNP	AIFM3	ENST00000399167	human	ensembl	74_37	+1	known	missense	c.35	p.E12A	1.000	NULL	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773				16	0	0	12	6	33.3333
TUBA3FP	0	genome.wustl.edu	37	22	21363561	21363561	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	21363561	21363561	T	C	SNP	TUBA3FP	ENST00000292748	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA3FP	HGNC	ENSG00000161149				120	0	0	85	6	6.59341
CCDC116	0	genome.wustl.edu	37	22	21989197	21989197	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	21989197	21989197	A	C	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	missense	c.845	p.Q282P	0.995	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180				209	0	0	85	52	37.9562
ZNF280B	0	genome.wustl.edu	37	22	22842885	22842885	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	22842885	22842885	T	C	SNP	ZNF280B	ENST00000360412	human	ensembl	74_37	-1	known	missense	c.839	p.N280S	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280B	HGNC	ENSG00000198477				139	0	0	65	36	35.6436
PRAME	0	genome.wustl.edu	37	22	22892500	22892500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	22892500	22892500	G	A	SNP	PRAME	ENST00000398741	human	ensembl	74_37	-1	known	nonsense	c.601	p.R201*	0.000	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686				211	0	0	110	48	30.3797
BCR	0	genome.wustl.edu	37	22	23613760	23613760	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	23613760	23613760	G	A	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	silent	c.1902	p.T634	0.701	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				83	0	0	36	20	35.7143
CES5AP1	0	genome.wustl.edu	37	22	23712541	23712541	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	23712541	23712541	G	A	SNP	CES5AP1	ENST00000415114	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	CES5AP1	HGNC	ENSG00000215478				90	0	0	39	25	39.0625
CABIN1	0	genome.wustl.edu	37	22	24456571	24456571	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	24456571	24456571	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.1584	p.P528	0.299	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				70	0	0	47	26	35.6164
CABIN1	0	genome.wustl.edu	37	22	24468452	24468452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	24468452	24468452	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.2624	p.A875V	0.001	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				101	1	0.980392	53	15	22.0588
CABIN1	0	genome.wustl.edu	37	22	24472128	24472128	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	24472128	24472128	G	A	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	silent	c.2643	p.E881	0.215	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				69	0	0	30	16	34.7826
GGT5	0	genome.wustl.edu	37	22	24616052	24616052	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	24616052	24616052	C	A	SNP	GGT5	ENST00000398292	human	ensembl	74_37	-1	known	missense	c.1650	p.Q550H	0.692	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998				71	0	0	30	18	37.5
ADORA2A	0	genome.wustl.edu	37	22	24837105	24837105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	24837105	24837105	G	A	SNP	ADORA2A	ENST00000337539	human	ensembl	74_37	+1	known	missense	c.887	p.R296H	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A2A_rcpt,prints_GPCR_Rhodpsn,prints_Adenosn_rcpt	-	no_errors	ADORA2A	HGNC	ENSG00000128271				125	0	0	45	28	38.3562
SGSM1	0	genome.wustl.edu	37	22	25240909	25240909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	25240909	25240909	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	missense	c.109	p.E37K	0.998	pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				72	0	0	39	23	37.0968
SGSM1	0	genome.wustl.edu	37	22	25282634	25282634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	25282634	25282634	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	missense	c.1874	p.A625V	0.980	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037				8	0	0	4	4	50
MYO18B	0	genome.wustl.edu	37	22	26159197	26159197	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	26159197	26159197	G	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	splice_site	c.40-1	e2-1	1.000	-	-	-	no_errors	MYO18B	HGNC	ENSG00000133454				58	0	0	22	9	29.0323
SEZ6L	0	genome.wustl.edu	37	22	26747069	26747069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	26747069	26747069	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.2459	p.S820L	0.999	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				146	0	0	69	39	36.1111
SEZ6L	0	genome.wustl.edu	37	22	26747191	26747191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	26747191	26747191	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	missense	c.2581	p.R861C	0.956	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095				119	0	0	61	31	33.6957
CCDC117	0	genome.wustl.edu	37	22	29177000	29177000	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	29177000	29177000	C	A	SNP	CCDC117	ENST00000249064	human	ensembl	74_37	+1	known	missense	c.304	p.L102I	1.000	NULL	NULL	-	no_errors	CCDC117	HGNC	ENSG00000159873				79	0	0	37	16	30.1887
AP1B1	0	genome.wustl.edu	37	22	29754901	29754901	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	29754901	29754901	G	A	SNP	AP1B1	ENST00000357586	human	ensembl	74_37	-1	known	silent	c.339	p.I113	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu_1_2_4	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,pfam_HEAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Armadillo,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP_complex_bsu_1_2_4	-	no_errors	AP1B1	HGNC	ENSG00000100280				32	0	0	14	7	33.3333
THOC5	0	genome.wustl.edu	37	22	29908111	29908111	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	29908111	29908111	C	T	SNP	THOC5	ENST00000397871	human	ensembl	74_37	-1	known	missense	c.1696	p.A566T	0.995	NULL	pfam_THO_Thoc5	-	no_errors	THOC5	HGNC	ENSG00000100296				58	0	0	36	16	30.7692
MTMR3	0	genome.wustl.edu	37	22	30374969	30374969	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	30374969	30374969	C	T	SNP	MTMR3	ENST00000401950	human	ensembl	74_37	+1	known	silent	c.138	p.G46	0.997	NULL	pfam_Myotubularin-like_Pase_dom,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Tyr_Pase_cat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	MTMR3	HGNC	ENSG00000100330				115	0	0	58	30	34.0909
SEC14L4	0	genome.wustl.edu	37	22	30891949	30891949	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	30891949	30891949	A	C	SNP	SEC14L4	ENST00000255858	human	ensembl	74_37	-1	known	missense	c.140	p.F47C	1.000	pfam_CRAL/TRIO_N_dom,superfamily_CRAL/TRIO_N_dom,prints_CRAL-bd_toc_tran	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488				66	0	0	28	14	33.3333
SMTN	0	genome.wustl.edu	37	22	31484584	31484584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31484584	31484584	A	G	SNP	SMTN	ENST00000347557	human	ensembl	74_37	+1	known	missense	c.286	p.T96A	1.000	pfam_Smoothelin	pfam_Smoothelin,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				113	0	0	49	24	32.8767
SMTN	0	genome.wustl.edu	37	22	31489749	31489749	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31489749	31489749	G	A	SNP	SMTN	ENST00000404574	human	ensembl	74_37	+1	putative	missense	c.316	p.D106N	0.948	NULL	pfam_CH-domain,pfam_Smoothelin,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SMTN	HGNC	ENSG00000183963				16	0	0	10	7	41.1765
INPP5J	0	genome.wustl.edu	37	22	31521798	31521798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31521798	31521798	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	missense	c.1073	p.R358H	0.051	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133				30	0	0	11	4	26.6667
PIK3IP1	0	genome.wustl.edu	37	22	31685536	31685536	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31685536	31685536	T	G	SNP	PIK3IP1	ENST00000215912	human	ensembl	74_37	-1	known	missense	c.457	p.S153R	1.000	NULL	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	-	no_errors	PIK3IP1	HGNC	ENSG00000100100				13	0	0	2	3	60
EIF4ENIF1	0	genome.wustl.edu	37	22	31884627	31884627	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31884627	31884627	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	74_37	-1	known	silent	c.78	p.C26	1.000	NULL	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708				95	0	0	48	29	37.6623
SFI1	0	genome.wustl.edu	37	22	31998258	31998258	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	31998258	31998258	A	C	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.1605	p.E535D	0.804	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				139	0	0	70	22	23.913
YWHAH	0	genome.wustl.edu	37	22	32352264	32352264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	32352264	32352264	G	A	SNP	YWHAH	ENST00000248975	human	ensembl	74_37	+1	known	missense	c.226	p.E76K	1.000	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3	pfam_14-3-3_domain,superfamily_14-3-3_domain,smart_14-3-3_domain,pirsf_14-3-3,prints_14-3-3	-	no_errors	YWHAH	HGNC	ENSG00000128245				89	0	0	39	21	35
RFPL3	0	genome.wustl.edu	37	22	32754255	32754255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	32754255	32754255	C	T	SNP	RFPL3	ENST00000249007	human	ensembl	74_37	+1	known	missense	c.197	p.S66L	0.004	pfam_RDM_domain_RFPL,pfscan_Znf_RING	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL3	HGNC	ENSG00000128276				154	0	0	74	36	32.7273
SYN3	0	genome.wustl.edu	37	22	32937665	32937665	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	32937665	32937665	A	G	SNP	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	missense	c.809	p.I270T	1.000	pfam_Synapsin_ATP-bd_dom,pfam_ATP-grasp_RimK-type	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666				53	0	0	30	14	31.8182
SYN3	0	genome.wustl.edu	37	22	33376685	33376685	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	33376685	33376685	G	A	SNP	SYN3	ENST00000332840	human	ensembl	74_37	-1	known	missense	c.314	p.S105L	0.969	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_dom,prints_Synapsin	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN3	HGNC	ENSG00000185666				262	0	0	144	75	34.2466
TOM1	0	genome.wustl.edu	37	22	35719555	35719555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	35719555	35719555	C	T	SNP	TOM1	ENST00000411850	human	ensembl	74_37	+1	known	missense	c.433	p.R145W	0.989	pfam_VHS,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_VHS	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1	HGNC	ENSG00000100284				160	0	0	73	36	33.0275
MCM5	0	genome.wustl.edu	37	22	35808654	35808654	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	35808654	35808654	C	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	silent	c.1071	p.L357	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297				108	0	0	40	27	40.2985
MYH9	0	genome.wustl.edu	37	22	36745002	36745002	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	36745002	36745002	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.280	p.E94K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				82	0	0	38	21	35.5932
EIF3D	0	genome.wustl.edu	37	22	36907072	36907072	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	36907072	36907072	G	T	SNP	EIF3D	ENST00000478547	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	EIF3D	HGNC	ENSG00000100353				39	0	0	36	18	33.3333
CACNG2	0	genome.wustl.edu	37	22	36983540	36983540	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	36983540	36983540	G	A	SNP	CACNG2	ENST00000300105	human	ensembl	74_37	-1	known	silent	c.267	p.Y89	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu,prints_VDCC_g2su,prints_Claudin	-	no_errors	CACNG2	HGNC	ENSG00000166862				186	0	0	67	52	43.6975
IFT27	0	genome.wustl.edu	37	22	37154255	37154255	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37154255	37154255	G	A	SNP	IFT27	ENST00000474616	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IFT27	HGNC	ENSG00000100360				32	0	0	19	12	38.7097
CSF2RB	0	genome.wustl.edu	37	22	37318260	37318260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37318260	37318260	C	T	SNP	CSF2RB	ENST00000262825	human	ensembl	74_37	+1	known	missense	c.11	p.A4V	0.000	pirsf_IL3_rcpt_beta	pirsf_IL3_rcpt_beta,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF2RB	HGNC	ENSG00000100368				13	0	0	8	5	38.4615
TMPRSS6	0	genome.wustl.edu	37	22	37499365	37499365	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37499365	37499365	A	G	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	silent	c.93	p.C31	0.000	pirsf_Pept_S1A_matriptase-2	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				197	0	0	92	38	29.2308
IL2RB	0	genome.wustl.edu	37	22	37533707	37533707	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37533707	37533707	C	T	SNP	IL2RB	ENST00000216223	human	ensembl	74_37	-1	known	missense	c.457	p.E153K	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RB	HGNC	ENSG00000100385				117	0	0	48	31	39.2405
ELFN2	0	genome.wustl.edu	37	22	37769204	37769204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37769204	37769204	C	T	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.2371	p.A791T	1.000	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				160	0	0	60	18	23.0769
ELFN2	0	genome.wustl.edu	37	22	37769767	37769767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	37769767	37769767	G	A	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	missense	c.1808	p.S603L	0.983	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				26	0	0	6	7	53.8462
TRIOBP	0	genome.wustl.edu	37	22	38097437	38097437	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	38097437	38097437	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.65	p.R22H	0.001	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				38	0	0	22	5	18.5185
POLR2F	0	genome.wustl.edu	37	22	38437203	38437203	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	38437203	38437203	G	A	SNP	POLR2F	ENST00000608713	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR2F	HGNC	ENSG00000100142				106	0	0	46	22	32.3529
CSNK1E	0	genome.wustl.edu	37	22	38696819	38696819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	38696819	38696819	C	T	SNP	CSNK1E	ENST00000359867	human	ensembl	74_37	-1	known	missense	c.475	p.A159T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CSNK1E	HGNC	ENSG00000213923				148	0	0	65	54	45.3782
DDX17	0	genome.wustl.edu	37	22	38882012	38882012	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	38882012	38882012	C	A	SNP	DDX17	ENST00000396821	human	ensembl	74_37	-1	known	missense	c.2124	p.M708I	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX17	HGNC	ENSG00000100201				207	1	0.480769	109	51	31.875
ENSG00000228274	0	genome.wustl.edu	37	22	39064260	39064260	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	39064260	39064260	C	A	SNP	ENSG00000228274	ENST00000422408	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-508I15.9	Clone_based_vega_gene	ENSG00000228274				24	0	0	11	5	31.25
MIEF1	0	genome.wustl.edu	37	22	39908025	39908025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	39908025	39908025	G	A	SNP	MIEF1	ENST00000325301	human	ensembl	74_37	+1	known	missense	c.316	p.D106N	1.000	NULL	NULL	-	no_errors	MIEF1	HGNC	ENSG00000100335				181	0	0	76	30	28.3019
CACNA1I	0	genome.wustl.edu	37	22	40055521	40055521	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40055521	40055521	A	G	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2432	p.D811G	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				31	0	0	19	5	20.8333
GRAP2	0	genome.wustl.edu	37	22	40365499	40365499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40365499	40365499	C	T	SNP	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	missense	c.775	p.R259W	0.801	NULL	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351				92	0	0	48	29	37.6623
TNRC6B	0	genome.wustl.edu	37	22	40661898	40661898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40661898	40661898	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.1664	p.A555V	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				115	0	0	87	9	9.375
TNRC6B	0	genome.wustl.edu	37	22	40662421	40662421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40662421	40662421	T	G	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	missense	c.2187	p.D729E	0.998	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354				51	0	0	30	9	23.0769
SGSM3	0	genome.wustl.edu	37	22	40802123	40802123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40802123	40802123	G	A	SNP	SGSM3	ENST00000248929	human	ensembl	74_37	+1	known	missense	c.856	p.A286T	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359				186	0	0	62	45	42.0561
SGSM3	0	genome.wustl.edu	37	22	40805350	40805350	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40805350	40805350	C	T	SNP	SGSM3	ENST00000248929	human	ensembl	74_37	+1	known	silent	c.2085	p.G695	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Rab-GTPase-TBC_dom,pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_Rab-GTPase-TBC_dom,superfamily_SH3_domain,smart_Rab-GTPase-TBC_dom,smart_SH3_domain,smart_Run,pfscan_Run,pfscan_SH3_domain,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM3	HGNC	ENSG00000100359				171	0	0	75	43	36.4407
MKL1	0	genome.wustl.edu	37	22	40814412	40814412	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40814412	40814412	T	C	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	missense	c.2030	p.D677G	0.973	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				167	0	0	69	27	28.125
MKL1	0	genome.wustl.edu	37	22	40819672	40819672	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	40819672	40819672	C	T	SNP	MKL1	ENST00000355630	human	ensembl	74_37	-1	known	silent	c.495	p.P165	0.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MKL1	HGNC	ENSG00000196588				73	0	0	37	12	24.4898
EP300	0	genome.wustl.edu	37	22	41574128	41574128	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	41574128	41574128	C	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.6413	p.A2138V	0.998	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				142	0	0	57	43	43
MEI1	0	genome.wustl.edu	37	22	42095614	42095614	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	42095614	42095614	C	T	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	silent	c.72	p.F24	0.009	NULL	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077				32	0	0	21	11	34.375
SEPT3	0	genome.wustl.edu	37	22	42377818	42377818	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	42377818	42377818	C	T	SNP	SEPT3	ENST00000396426	human	ensembl	74_37	+1	known	silent	c.180	p.F60	0.774	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167				59	0	0	22	19	46.3415
WBP2NL	0	genome.wustl.edu	37	22	42397265	42397265	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	42397265	42397265	G	A	SNP	WBP2NL	ENST00000461730	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	WBP2NL	HGNC	ENSG00000183066				92	0	0	32	20	38.4615
WBP2NL	0	genome.wustl.edu	37	22	42397613	42397613	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	42397613	42397613	G	A	SNP	WBP2NL	ENST00000461730	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	WBP2NL	HGNC	ENSG00000183066				139	0	0	74	48	39.3443
TCF20	0	genome.wustl.edu	37	22	42609814	42609814	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	42609814	42609814	T	G	SNP	TCF20	ENST00000359486	human	ensembl	74_37	-1	known	missense	c.1498	p.N500H	1.000	NULL	smart_Znf_PHD	-	no_errors	TCF20	HGNC	ENSG00000100207				384	0	0	208	91	30.4348
PACSIN2	0	genome.wustl.edu	37	22	43289591	43289591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	43289591	43289591	C	T	SNP	PACSIN2	ENST00000263246	human	ensembl	74_37	-1	known	missense	c.89	p.R30Q	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN2	HGNC	ENSG00000100266				108	0	0	41	27	39.7059
SCUBE1	0	genome.wustl.edu	37	22	43616481	43616481	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	43616481	43616481	G	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.1662	p.I554	0.993	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				138	0	0	75	31	29.2453
SCUBE1	0	genome.wustl.edu	37	22	43619155	43619155	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	43619155	43619155	G	A	SNP	SCUBE1	ENST00000360835	human	ensembl	74_37	-1	known	silent	c.1275	p.G425	0.055	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE1	HGNC	ENSG00000159307				207	1	0.480769	70	51	42.1488
EFCAB6	0	genome.wustl.edu	37	22	44067870	44067870	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	44067870	44067870	C	T	SNP	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	silent	c.1623	p.T541	0.000	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				76	0	0	35	20	36.3636
SAMM50	0	genome.wustl.edu	37	22	44364687	44364687	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	44364687	44364687	A	G	SNP	SAMM50	ENST00000350028	human	ensembl	74_37	+1	known	missense	c.311	p.D104G	0.996	NULL	pfam_Bac_surfAg_D15	-	no_errors	SAMM50	HGNC	ENSG00000100347				131	0	0	53	28	34.5679
WNT7B	0	genome.wustl.edu	37	22	46327148	46327148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46327148	46327148	C	T	SNP	WNT7B	ENST00000339464	human	ensembl	74_37	-1	known	missense	c.400	p.D134N	1.000	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7B	HGNC	ENSG00000188064				125	0	0	43	15	25.8621
PPARA	0	genome.wustl.edu	37	22	46614182	46614182	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46614182	46614182	G	A	SNP	PPARA	ENST00000262735	human	ensembl	74_37	+1	known	missense	c.392	p.R131Q	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951				119	0	0	38	38	50
PKDREJ	0	genome.wustl.edu	37	22	46653760	46653760	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46653760	46653760	T	G	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.5460	p.E1820D	0.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				358	1	0.278552	209	104	33.2268
PKDREJ	0	genome.wustl.edu	37	22	46653808	46653808	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46653808	46653808	T	G	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.5412	p.K1804N	0.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				378	0	0	200	108	35.0649
PKDREJ	0	genome.wustl.edu	37	22	46656446	46656446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46656446	46656446	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	missense	c.2774	p.S925L	0.000	NULL	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943				329	0	0	154	84	35.2941
CELSR1	0	genome.wustl.edu	37	22	46794454	46794454	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	46794454	46794454	G	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.5493	p.V1831	0.024	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				94	0	0	44	28	38.8889
GRAMD4	0	genome.wustl.edu	37	22	47022799	47022799	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	47022799	47022799	G	A	SNP	GRAMD4	ENST00000361034	human	ensembl	74_37	+1	known	missense	c.103	p.E35K	1.000	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240				140	0	0	68	42	38.1818
TUBGCP6	0	genome.wustl.edu	37	22	50659884	50659884	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	50659884	50659884	C	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	silent	c.2904	p.G968	0.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159				27	0	0	7	3	30
PLXNB2	0	genome.wustl.edu	37	22	50718432	50718432	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	50718432	50718432	A	G	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	splice_site	c.4242+2	e24+2	1.000	-	-	-	no_errors	PLXNB2	HGNC	ENSG00000196576				100	0	0	44	19	30.1587
SBF1	0	genome.wustl.edu	37	22	50900836	50900836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	50900836	50900836	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.2194	p.R732C	1.000	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				203	0	0	73	52	41.6
MIOX	0	genome.wustl.edu	37	22	50927709	50927709	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	22	50927709	50927709	T	C	SNP	MIOX	ENST00000216075	human	ensembl	74_37	+1	known	missense	c.571	p.S191P	1.000	pfam_Inositol_oxygenase	pfam_Inositol_oxygenase	-	no_errors	MIOX	HGNC	ENSG00000100253				29	0	0	10	3	23.0769
LNP1	0	genome.wustl.edu	37	3	100170651	100170651	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	100170651	100170651	T	C	SNP	LNP1	ENST00000383693	human	ensembl	74_37	+1	known	missense	c.245	p.V82A	0.001	NULL	NULL	-	no_errors	LNP1	HGNC	ENSG00000206535				92	0	0	66	33	33.3333
LNP1	0	genome.wustl.edu	37	3	100174638	100174638	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	100174638	100174638	G	T	SNP	LNP1	ENST00000383693	human	ensembl	74_37	+1	known	missense	c.405	p.K135N	0.860	NULL	NULL	-	no_errors	LNP1	HGNC	ENSG00000206535				83	0	0	62	26	29.5455
ENSG00000206567	0	genome.wustl.edu	37	3	10050312	10050312	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	10050312	10050312	G	A	SNP	ENSG00000206567	ENST00000383808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	AC022007.5	Clone_based_vega_gene	ENSG00000206567				18	0	0	8	9	52.9412
ABI3BP	0	genome.wustl.edu	37	3	100511604	100511604	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	100511604	100511604	C	A	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.1897	p.D633Y	0.996	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				53	0	0	34	22	39.2857
ABI3BP	0	genome.wustl.edu	37	3	100605153	100605153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	100605153	100605153	C	T	SNP	ABI3BP	ENST00000284322	human	ensembl	74_37	-1	known	missense	c.497	p.R166H	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175				24	0	0	21	9	30
ZBTB11	0	genome.wustl.edu	37	3	101395663	101395663	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	101395663	101395663	T	G	SNP	ZBTB11	ENST00000312938	human	ensembl	74_37	-1	known	missense	c.96	p.K32N	0.995	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB11	HGNC	ENSG00000066422				65	0	0	34	15	30.6122
FANCD2OS	0	genome.wustl.edu	37	3	10146117	10146117	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	10146117	10146117	C	T	SNP	FANCD2OS	ENST00000450660	human	ensembl	74_37	-1	known	nonsense	c.342	p.W114*	1.000	NULL	NULL	-	no_errors	FANCD2OS	HGNC	ENSG00000163705				168	0	0	92	37	28.6822
NXPE3	0	genome.wustl.edu	37	3	101520806	101520806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	101520806	101520806	C	T	SNP	NXPE3	ENST00000273347	human	ensembl	74_37	+1	known	missense	c.821	p.T274I	0.961	pfam_NXPH/NXPE	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE3	HGNC	ENSG00000144815				208	0	0	167	25	13.0208
SEC13	0	genome.wustl.edu	37	3	10354352	10354352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	10354352	10354352	G	A	SNP	SEC13	ENST00000350697	human	ensembl	74_37	-1	known	missense	c.227	p.S76L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC13	HGNC	ENSG00000157020				163	0	0	78	44	36.0656
HHLA2	0	genome.wustl.edu	37	3	108072323	108072323	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	108072323	108072323	C	T	SNP	HHLA2	ENST00000357759	human	ensembl	74_37	+1	known	silent	c.114	p.I38	0.000	smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	HHLA2	HGNC	ENSG00000114455				18	0	0	15	4	21.0526
HHLA2	0	genome.wustl.edu	37	3	108072555	108072555	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	108072555	108072555	G	A	SNP	HHLA2	ENST00000357759	human	ensembl	74_37	+1	known	missense	c.346	p.E116K	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr	pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	HHLA2	HGNC	ENSG00000114455				62	0	0	37	15	28.8462
GUCA1C	0	genome.wustl.edu	37	3	108627035	108627035	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	108627035	108627035	A	C	SNP	GUCA1C	ENST00000261047	human	ensembl	74_37	-1	known	missense	c.464	p.F155C	0.984	smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	GUCA1C	HGNC	ENSG00000138472				57	0	0	37	19	33.9286
MORC1	0	genome.wustl.edu	37	3	108751664	108751664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	108751664	108751664	G	T	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	missense	c.1468	p.L490I	1.000	pfam_Znf_CW,pfscan_Znf_CW	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				63	0	0	42	24	36.3636
ZBED2	0	genome.wustl.edu	37	3	111312952	111312952	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	111312952	111312952	C	A	SNP	ZBED2	ENST00000317012	human	ensembl	74_37	-1	known	nonsense	c.97	p.E33*	0.079	NULL	pfam_Znf_BED_prd,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED2	HGNC	ENSG00000177494				113	1	0.877193	69	47	40.5172
CD96	0	genome.wustl.edu	37	3	111325554	111325554	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	111325554	111325554	A	C	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	missense	c.1143	p.E381D	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283				79	0	0	55	21	27.6316
PHLDB2	0	genome.wustl.edu	37	3	111671489	111671489	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	111671489	111671489	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.2702	p.R901Q	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				100	0	0	51	40	43.956
ABHD10	0	genome.wustl.edu	37	3	111700772	111700772	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	111700772	111700772	C	T	SNP	ABHD10	ENST00000273359	human	ensembl	74_37	+1	known	missense	c.284	p.A95V	1.000	NULL	pfam_AB_hydrolase_1,pfam_Peptidase_S9	-	no_errors	ABHD10	HGNC	ENSG00000144827				84	0	0	44	23	34.3284
SLC9C1	0	genome.wustl.edu	37	3	111921223	111921223	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	111921223	111921223	T	G	SNP	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	missense	c.2196	p.Q732H	0.018	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139				93	0	0	74	44	37.2881
BTLA	0	genome.wustl.edu	37	3	112184788	112184788	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	112184788	112184788	A	C	SNP	BTLA	ENST00000474965	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.466	-	-	-	no_errors	BTLA	HGNC	ENSG00000186265				15	0	0	13	8	38.0952
CCDC80	0	genome.wustl.edu	37	3	112358445	112358445	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	112358445	112358445	C	A	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.308	p.R103I	0.294	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986				165	0	0	87	37	29.8387
CD200R1L	0	genome.wustl.edu	37	3	112546460	112546460	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	112546460	112546460	A	C	SNP	CD200R1L	ENST00000398214	human	ensembl	74_37	-1	known	missense	c.184	p.L62V	0.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	CD200R1L	HGNC	ENSG00000206531				137	0	0	100	41	29.078
C3orf17	0	genome.wustl.edu	37	3	112730203	112730203	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	112730203	112730203	A	T	SNP	C3orf17	ENST00000314400	human	ensembl	74_37	-1	known	nonsense	c.602	p.L201*	0.982	NULL	NULL	-	no_errors	C3orf17	HGNC	ENSG00000163608				158	0	0	100	47	31.9728
BOC	0	genome.wustl.edu	37	3	112999414	112999414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	112999414	112999414	G	A	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.2215	p.A739T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				135	0	0	71	34	32.381
BOC	0	genome.wustl.edu	37	3	113005647	113005647	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113005647	113005647	A	G	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.3286	p.M1096V	0.002	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				248	0	0	138	54	28.125
HRH1	0	genome.wustl.edu	37	3	11301359	11301359	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	11301359	11301359	G	T	SNP	HRH1	ENST00000397056	human	ensembl	74_37	+1	known	missense	c.636	p.K212N	0.992	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Histamine_H1_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_rcpt	-	no_errors	HRH1	HGNC	ENSG00000196639				204	0	0	104	43	29.2517
SIDT1	0	genome.wustl.edu	37	3	113321949	113321949	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113321949	113321949	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	silent	c.1215	p.F405	0.106	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				88	0	0	61	22	26.506
SIDT1	0	genome.wustl.edu	37	3	113322822	113322822	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113322822	113322822	T	C	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	missense	c.1279	p.S427P	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858				21	0	0	19	12	38.7097
KIAA2018	0	genome.wustl.edu	37	3	113377699	113377699	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113377699	113377699	A	C	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.2830	p.L944V	0.006	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				238	0	0	136	68	33.3333
KIAA2018	0	genome.wustl.edu	37	3	113378349	113378349	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113378349	113378349	A	G	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	missense	c.2180	p.V727A	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				116	0	0	44	18	29.0323
ATP6V1A	0	genome.wustl.edu	37	3	113497631	113497631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113497631	113497631	G	A	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	missense	c.31	p.D11N	1.000	superfamily_ATPase_F1_a/bsu_N	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573				38	0	0	26	15	36.5854
ATP6V1A	0	genome.wustl.edu	37	3	113503563	113503563	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	113503563	113503563	C	T	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	silent	c.447	p.G149	0.862	tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573				113	0	0	61	33	35.1064
IGSF11	0	genome.wustl.edu	37	3	118621425	118621425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	118621425	118621425	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.1238	p.R413Q	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				161	1	0.617284	149	21	12.3529
IGSF11	0	genome.wustl.edu	37	3	118624560	118624560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	118624560	118624560	C	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.586	p.V196I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				85	0	0	41	25	37.8788
ARHGAP31	0	genome.wustl.edu	37	3	119087355	119087355	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119087355	119087355	A	G	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.340	p.K114E	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				73	0	0	38	22	36.6667
POGLUT1	0	genome.wustl.edu	37	3	119211258	119211258	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119211258	119211258	T	C	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	silent	c.1152	p.I384	0.862	pfam_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				88	0	0	47	26	35.6164
TIMMDC1	0	genome.wustl.edu	37	3	119219697	119219697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119219697	119219697	T	G	SNP	TIMMDC1	ENST00000494664	human	ensembl	74_37	+1	known	missense	c.350	p.F117C	0.966	pfam_Tim17/Tim22/Tim23/PMP24	pfam_Tim17/Tim22/Tim23/PMP24	-	no_errors	TIMMDC1	HGNC	ENSG00000113845				117	0	0	94	45	32.3741
POPDC2	0	genome.wustl.edu	37	3	119361312	119361312	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119361312	119361312	T	C	SNP	POPDC2	ENST00000474523	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POPDC2	HGNC	ENSG00000121577				92	0	0	61	25	29.0698
GSK3B	0	genome.wustl.edu	37	3	119631622	119631622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119631622	119631622	G	A	SNP	GSK3B	ENST00000316626	human	ensembl	74_37	-1	known	missense	c.644	p.S215L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701				73	0	0	43	20	31.746
GSK3B	0	genome.wustl.edu	37	3	119720900	119720900	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119720900	119720900	C	A	SNP	GSK3B	ENST00000316626	human	ensembl	74_37	-1	known	missense	c.275	p.R92I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	GSK3B	HGNC	ENSG00000082701				164	0	0	100	52	34.2105
GPR156	0	genome.wustl.edu	37	3	119962867	119962867	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	119962867	119962867	G	T	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.79	p.L27I	1.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697				98	0	0	22	40	64.5161
LRRC58	0	genome.wustl.edu	37	3	120067729	120067729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	120067729	120067729	C	T	SNP	LRRC58	ENST00000295628	human	ensembl	74_37	-1	known	missense	c.362	p.S121N	0.999	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC58	HGNC	ENSG00000163428				10	0	0	11	4	26.6667
HGD	0	genome.wustl.edu	37	3	120389326	120389326	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	120389326	120389326	T	C	SNP	HGD	ENST00000283871	human	ensembl	74_37	-1	known	missense	c.230	p.D77G	0.997	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	pfam_Homogentis_dOase,superfamily_RmlC_Cupin,tigrfam_Homogentis_dOase	-	no_errors	HGD	HGNC	ENSG00000113924				158	0	0	63	27	30
GTF2E1	0	genome.wustl.edu	37	3	120469443	120469443	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	120469443	120469443	A	C	SNP	GTF2E1	ENST00000283875	human	ensembl	74_37	+1	known	missense	c.44	p.K15T	1.000	NULL	pfam_TFIIEa/SarR/Rpc3_HTH_dom,pfam_TFIIE_asu_C,pfam_Znf_TFIIB,smart_TFIIE_asu	-	no_errors	GTF2E1	HGNC	ENSG00000153767				161	0	0	95	45	32.1429
STXBP5L	0	genome.wustl.edu	37	3	120760555	120760555	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	120760555	120760555	G	T	SNP	STXBP5L	ENST00000273666	human	ensembl	74_37	+1	known	missense	c.296	p.R99I	1.000	superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5L	HGNC	ENSG00000145087				62	0	0	35	12	25.5319
POLQ	0	genome.wustl.edu	37	3	121215700	121215700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121215700	121215700	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.2233	p.R745C	1.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				118	0	0	68	49	41.8803
POLQ	0	genome.wustl.edu	37	3	121238807	121238807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121238807	121238807	C	T	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.1379	p.R460Q	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				214	0	0	156	81	34.1772
POLQ	0	genome.wustl.edu	37	3	121258410	121258410	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121258410	121258410	T	C	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	silent	c.501	p.K167	0.967	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				72	0	0	47	30	38.961
FBXO40	0	genome.wustl.edu	37	3	121340587	121340587	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121340587	121340587	A	G	SNP	FBXO40	ENST00000338040	human	ensembl	74_37	+1	known	missense	c.311	p.N104S	0.829	NULL	superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833				122	0	0	46	29	38.6667
FBXO40	0	genome.wustl.edu	37	3	121341621	121341621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121341621	121341621	G	A	SNP	FBXO40	ENST00000338040	human	ensembl	74_37	+1	known	missense	c.1345	p.A449T	0.000	NULL	superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833				122	0	0	52	29	35.8025
HCLS1	0	genome.wustl.edu	37	3	121351279	121351279	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121351279	121351279	G	A	SNP	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	silent	c.1140	p.D380	0.993	NULL	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353				366	0	0	173	78	31.0757
HCLS1	0	genome.wustl.edu	37	3	121354598	121354598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121354598	121354598	C	T	SNP	HCLS1	ENST00000495491	human	ensembl	74_37	-1	known	missense	c.620	p.R207Q	0.766	NULL	pfam_Hs1_Cortactin,pfscan_Hs1_Cortactin	-	no_errors	HCLS1	HGNC	ENSG00000180353				154	0	0	87	43	33.0769
HCLS1	0	genome.wustl.edu	37	3	121361945	121361945	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121361945	121361945	T	C	SNP	HCLS1	ENST00000473883	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HCLS1	HGNC	ENSG00000180353				38	0	0	10	5	33.3333
HCLS1	0	genome.wustl.edu	37	3	121376072	121376072	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121376072	121376072	C	A	SNP	HCLS1	ENST00000468693	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HCLS1	HGNC	ENSG00000180353				254	0	0	137	55	28.6458
GOLGB1	0	genome.wustl.edu	37	3	121416180	121416180	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121416180	121416180	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	nonsense	c.3175	p.E1059*	0.917	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				111	0	0	82	34	29.3103
GOLGB1	0	genome.wustl.edu	37	3	121417443	121417443	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121417443	121417443	C	A	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	nonsense	c.1912	p.E638*	0.002	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				119	0	0	88	47	34.8148
GOLGB1	0	genome.wustl.edu	37	3	121417683	121417683	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121417683	121417683	C	T	SNP	GOLGB1	ENST00000340645	human	ensembl	74_37	-1	known	missense	c.1672	p.E558K	1.000	NULL	superfamily_Prefoldin,superfamily_STAT_TF_coiled-coil,smart_Leu_zip_homeo	-	no_errors	GOLGB1	HGNC	ENSG00000173230				101	0	0	87	41	32.0312
CASR	0	genome.wustl.edu	37	3	121980561	121980561	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	121980561	121980561	C	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	nonsense	c.679	p.R227*	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				245	0	0	145	68	31.9249
PARP15	0	genome.wustl.edu	37	3	122335919	122335919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122335919	122335919	C	T	SNP	PARP15	ENST00000464300	human	ensembl	74_37	+1	known	missense	c.908	p.A303V	0.016	pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				156	0	0	80	43	34.9593
PARP15	0	genome.wustl.edu	37	3	122340311	122340311	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122340311	122340311	T	G	SNP	PARP15	ENST00000464300	human	ensembl	74_37	+1	known	missense	c.1084	p.F362V	0.032	pfam_Macro_dom,smart_Macro_dom,pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				99	0	0	57	33	36.6667
PARP15	0	genome.wustl.edu	37	3	122345735	122345735	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122345735	122345735	C	A	SNP	PARP15	ENST00000464300	human	ensembl	74_37	+1	known	missense	c.1293	p.F431L	0.000	pfscan_Macro_dom	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP15	HGNC	ENSG00000173200				86	0	0	45	25	35.7143
PARP14	0	genome.wustl.edu	37	3	122418266	122418266	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122418266	122418266	G	A	SNP	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	missense	c.865	p.D289N	0.000	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193				53	0	0	39	21	35
HSPBAP1	0	genome.wustl.edu	37	3	122459983	122459983	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122459983	122459983	T	C	SNP	HSPBAP1	ENST00000471534	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPBAP1	HGNC	ENSG00000169087				54	0	0	33	6	15.3846
DIRC2	0	genome.wustl.edu	37	3	122564623	122564623	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122564623	122564623	T	G	SNP	DIRC2	ENST00000261038	human	ensembl	74_37	+1	known	missense	c.847	p.L283V	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463				39	0	0	25	10	28.5714
SEMA5B	0	genome.wustl.edu	37	3	122630371	122630371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122630371	122630371	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.3220	p.A1074T	1.000	NULL	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				29	0	0	12	5	29.4118
SEMA5B	0	genome.wustl.edu	37	3	122632771	122632771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	122632771	122632771	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.2228	p.R743Q	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				119	0	0	53	33	38.3721
PTPLB	0	genome.wustl.edu	37	3	123219414	123219414	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	123219414	123219414	G	T	SNP	PTPLB	ENST00000383657	human	ensembl	74_37	-1	known	missense	c.630	p.F210L	1.000	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLB	HGNC	ENSG00000206527				62	0	0	33	16	32.6531
MYLK	0	genome.wustl.edu	37	3	123385191	123385191	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	123385191	123385191	T	G	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.3706	p.M1236L	0.871	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				72	0	0	32	18	36
MYLK	0	genome.wustl.edu	37	3	123419348	123419348	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	123419348	123419348	C	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.2967	p.K989N	0.988	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				145	0	0	60	30	33.3333
MYLK	0	genome.wustl.edu	37	3	123427629	123427629	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	123427629	123427629	A	G	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.2056	p.F686L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				179	0	0	89	44	33.0827
KALRN	0	genome.wustl.edu	37	3	124420922	124420922	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	124420922	124420922	A	C	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.8034	p.E2678D	0.994	superfamily_Kinase-like_dom	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				124	0	0	79	41	34.1667
UMPS	0	genome.wustl.edu	37	3	124462839	124462839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	124462839	124462839	C	T	SNP	UMPS	ENST00000232607	human	ensembl	74_37	+1	known	missense	c.1351	p.R451C	1.000	pfam_OMPdeCOase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase	pfam_OMPdeCOase_dom,pfam_PRibTrfase_dom,superfamily_RibuloseP-bd_barrel,smart_OMPdeCOase_dom,tigrfam_OMPdecase,tigrfam_Or_phspho_trans_dom	-	no_errors	UMPS	HGNC	ENSG00000114491				134	0	0	59	23	28.0488
HEG1	0	genome.wustl.edu	37	3	124739858	124739858	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	124739858	124739858	G	A	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	nonsense	c.1030	p.R344*	0.014	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706				55	0	0	29	11	27.5
MKRN2	0	genome.wustl.edu	37	3	12613843	12613843	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	12613843	12613843	G	A	SNP	MKRN2	ENST00000170447	human	ensembl	74_37	+1	known	missense	c.613	p.D205N	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	MKRN2	HGNC	ENSG00000075975				64	0	0	28	20	41.6667
ZXDC	0	genome.wustl.edu	37	3	126189737	126189737	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	126189737	126189737	C	T	SNP	ZXDC	ENST00000389709	human	ensembl	74_37	-1	known	splice_site	c.1270+1	e4+1	1.000	-	-	-	no_errors	ZXDC	HGNC	ENSG00000070476				143	0	0	60	28	31.8182
PLXNA1	0	genome.wustl.edu	37	3	126751319	126751319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	126751319	126751319	C	T	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.5321	p.S1774L	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				157	0	0	74	38	33.9286
TPRA1	0	genome.wustl.edu	37	3	127295857	127295857	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	127295857	127295857	C	T	SNP	TPRA1	ENST00000355552	human	ensembl	74_37	-1	known	silent	c.321	p.S107	0.007	pfam_Uncharacterised_TM-40	pfam_Uncharacterised_TM-40	-	no_errors	TPRA1	HGNC	ENSG00000163870				123	1	0.806452	53	28	34.5679
PODXL2	0	genome.wustl.edu	37	3	127379708	127379708	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	127379708	127379708	C	T	SNP	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	silent	c.837	p.F279	0.001	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631				75	0	0	42	15	26.3158
MGLL	0	genome.wustl.edu	37	3	127500727	127500727	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	127500727	127500727	A	T	SNP	MGLL	ENST00000265052	human	ensembl	74_37	-1	known	missense	c.167	p.F56Y	0.999	pfam_Lysophospholipase_put	pfam_Lysophospholipase_put,pfam_AB_hydrolase_1,pfam_Lipase_3,pfam_Esterase_put,pfam_AB_hydrolase_3,prints_AB_hydrolase_1	-	no_errors	MGLL	HGNC	ENSG00000074416				82	0	0	29	17	36.9565
RUVBL1	0	genome.wustl.edu	37	3	127823693	127823693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	127823693	127823693	G	A	SNP	RUVBL1	ENST00000322623	human	ensembl	74_37	-1	known	missense	c.436	p.P146S	1.000	pfam_TIP49_C,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase	pfam_TIP49_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase	-	no_errors	RUVBL1	HGNC	ENSG00000175792				107	0	0	51	32	38.5542
RPN1	0	genome.wustl.edu	37	3	128339383	128339383	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	128339383	128339383	C	T	SNP	RPN1	ENST00000296255	human	ensembl	74_37	-1	known	silent	c.1695	p.S565	0.752	NULL	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902				190	0	0	92	35	27.5591
RAB7A	0	genome.wustl.edu	37	3	128525422	128525422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	128525422	128525422	G	A	SNP	RAB7A	ENST00000265062	human	ensembl	74_37	+1	known	missense	c.388	p.E130K	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB7A	HGNC	ENSG00000075785				57	0	0	32	18	36
ENSG00000261159	0	genome.wustl.edu	37	3	128578695	128578695	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	128578695	128578695	C	T	SNP	ENSG00000261159	ENST00000567253	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-723O4.9	Clone_based_vega_gene	ENSG00000261159				18	0	0	12	5	29.4118
CAND2	0	genome.wustl.edu	37	3	12858123	12858123	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	12858123	12858123	G	A	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	silent	c.1692	p.E564	0.757	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				112	0	0	46	36	43.9024
CAND2	0	genome.wustl.edu	37	3	12858461	12858461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	12858461	12858461	A	G	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.2030	p.D677G	0.975	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				86	0	0	42	22	34.375
CAND2	0	genome.wustl.edu	37	3	12858543	12858543	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	12858543	12858543	C	T	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	silent	c.2112	p.N704	0.020	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				61	0	0	44	14	24.1379
KIAA1257	0	genome.wustl.edu	37	3	128706483	128706483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	128706483	128706483	C	T	SNP	KIAA1257	ENST00000265068	human	ensembl	74_37	-1	known	missense	c.643	p.D215N	0.010	NULL	NULL	-	no_errors	KIAA1257	HGNC	ENSG00000114656				96	0	0	68	36	34.6154
HMCES	0	genome.wustl.edu	37	3	129009603	129009603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129009603	129009603	A	G	SNP	HMCES	ENST00000383463	human	ensembl	74_37	+1	known	missense	c.409	p.R137G	0.874	pfam_DUF159,superfamily_DUF159	pfam_DUF159,superfamily_DUF159	-	no_errors	HMCES	HGNC	ENSG00000183624				148	0	0	76	35	31.5315
EFCAB12	0	genome.wustl.edu	37	3	129137112	129137112	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129137112	129137112	G	A	SNP	EFCAB12	ENST00000326085	human	ensembl	74_37	-1	known	silent	c.666	p.I222	0.002	pfscan_EF_hand_dom	pfscan_EF_hand_dom	-	no_errors	EFCAB12	HGNC	ENSG00000172771				43	0	0	18	12	40
MBD4	0	genome.wustl.edu	37	3	129155520	129155520	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129155520	129155520	A	C	SNP	MBD4	ENST00000249910	human	ensembl	74_37	-1	known	missense	c.967	p.F323V	0.000	pirsf_Me_CpG-bd_MBD4	pfam_Methyl_CpG_DNA-bd,pfam_HhH-GPD_domain,superfamily_DNA-bd_dom,superfamily_DNA_glycosylase,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MBD4,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD4	HGNC	ENSG00000129071				117	0	0	79	53	40.1515
RHO	0	genome.wustl.edu	37	3	129247781	129247781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129247781	129247781	C	T	SNP	RHO	ENST00000296271	human	ensembl	74_37	+1	known	missense	c.205	p.R69C	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin	pfam_GPCR_Rhodpsn,pfam_Rhodopsin_N,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Rhodopsin,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	RHO	HGNC	ENSG00000163914				130	0	0	72	45	38.4615
PLXND1	0	genome.wustl.edu	37	3	129277299	129277299	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129277299	129277299	C	A	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.5417	p.C1806F	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				111	0	0	46	24	34.2857
PLXND1	0	genome.wustl.edu	37	3	129302495	129302495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	129302495	129302495	G	A	SNP	PLXND1	ENST00000324093	human	ensembl	74_37	-1	known	missense	c.2156	p.S719L	0.968	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXND1	HGNC	ENSG00000004399				40	0	0	19	18	48.6486
IQSEC1	0	genome.wustl.edu	37	3	12955032	12955032	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	12955032	12955032	G	A	SNP	IQSEC1	ENST00000273221	human	ensembl	74_37	-1	known	missense	c.2254	p.R752W	0.919	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7_dom	-	no_errors	IQSEC1	HGNC	ENSG00000144711				55	0	0	21	10	32.2581
COL6A5	0	genome.wustl.edu	37	3	130095473	130095473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130095473	130095473	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.461	p.S154L	0.373	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				17	0	0	20	6	23.0769
COL6A5	0	genome.wustl.edu	37	3	130095664	130095664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130095664	130095664	G	A	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.652	p.D218N	0.001	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				40	0	0	26	7	21.2121
COL6A5	0	genome.wustl.edu	37	3	130159198	130159198	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130159198	130159198	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.6016	p.D2006Y	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752				51	0	0	30	16	34.7826
COL6A6	0	genome.wustl.edu	37	3	130284283	130284283	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130284283	130284283	C	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.1107	p.G369	0.002	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				180	0	0	84	39	31.7073
COL6A6	0	genome.wustl.edu	37	3	130290173	130290173	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130290173	130290173	T	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.2913	p.T971	0.711	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				79	0	0	42	34	44.7368
COL6A6	0	genome.wustl.edu	37	3	130361855	130361855	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130361855	130361855	C	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	nonsense	c.5215	p.R1739*	1.000	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				36	0	0	21	12	36.3636
COL6A6	0	genome.wustl.edu	37	3	130368016	130368016	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130368016	130368016	T	G	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	silent	c.5343	p.A1781	0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				16	0	0	9	4	30.7692
PIK3R4	0	genome.wustl.edu	37	3	130442276	130442276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130442276	130442276	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.1963	p.E655K	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				86	0	0	67	27	28.7234
PIK3R4	0	genome.wustl.edu	37	3	130463973	130463973	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130463973	130463973	T	G	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.90	p.K30N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455				89	0	0	40	23	36.5079
ASTE1	0	genome.wustl.edu	37	3	130743446	130743446	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	130743446	130743446	G	T	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.705	p.F235L	0.962	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				124	0	0	76	33	30.2752
NUDT16P1	0	genome.wustl.edu	37	3	131082221	131082221	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	131082221	131082221	C	T	SNP	NUDT16P1	ENST00000499077	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NUDT16P	Clone_based_vega_gene	ENSG00000246082				34	0	0	19	6	24
DNAJC13	0	genome.wustl.edu	37	3	132166252	132166252	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132166252	132166252	A	C	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.232	p.K78Q	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				71	0	0	65	4	5.7971
DNAJC13	0	genome.wustl.edu	37	3	132172174	132172174	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132172174	132172174	T	C	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	silent	c.570	p.I190	0.978	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				61	0	0	44	17	27.8689
DNAJC13	0	genome.wustl.edu	37	3	132241676	132241676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132241676	132241676	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.5678	p.R1893Q	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				31	0	0	25	13	34.2105
ACKR4	0	genome.wustl.edu	37	3	132320115	132320115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132320115	132320115	G	A	SNP	ACKR4	ENST00000249887	human	ensembl	74_37	+1	known	missense	c.874	p.A292T	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCRL1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	ACKR4	HGNC	ENSG00000129048				366	1	0.27248	276	68	19.7674
NPHP3	0	genome.wustl.edu	37	3	132401613	132401613	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132401613	132401613	T	C	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.3746	p.Y1249C	1.000	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				98	0	0	75	41	35.3448
NPHP3	0	genome.wustl.edu	37	3	132403524	132403524	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132403524	132403524	C	T	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	silent	c.3444	p.K1148	1.000	pfam_TPR_1,pfam_TPR-3,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				70	0	0	51	31	37.8049
NPHP3	0	genome.wustl.edu	37	3	132415633	132415633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132415633	132415633	G	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.2113	p.R705C	1.000	superfamily_P-loop_NTPase	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				163	0	0	90	47	34.3066
NPHP3	0	genome.wustl.edu	37	3	132437924	132437924	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	132437924	132437924	C	A	SNP	NPHP3	ENST00000337331	human	ensembl	74_37	-1	known	missense	c.584	p.S195I	1.000	NULL	pfam_TPR_1,pfam_TPR-3,superfamily_P-loop_NTPase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NPHP3	HGNC	ENSG00000113971				128	0	0	84	37	30.5785
BFSP2	0	genome.wustl.edu	37	3	133185754	133185754	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	133185754	133185754	C	T	SNP	BFSP2	ENST00000302334	human	ensembl	74_37	+1	known	missense	c.974	p.S325L	0.442	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	BFSP2	HGNC	ENSG00000170819				122	0	0	64	33	34.0206
NUP210	0	genome.wustl.edu	37	3	13372091	13372091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	13372091	13372091	C	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.3979	p.E1327K	0.886	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				175	0	0	67	38	36.1905
NUP210	0	genome.wustl.edu	37	3	13417924	13417924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	13417924	13417924	C	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	missense	c.1160	p.R387Q	0.999	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182				101	0	0	44	27	38.0282
KY	0	genome.wustl.edu	37	3	134327586	134327586	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	134327586	134327586	G	T	SNP	KY	ENST00000423778	human	ensembl	74_37	-1	known	missense	c.995	p.S332Y	0.991	NULL	pfam_Transglutaminase-like,smart_Transglutaminase-like	-	no_errors	KY	HGNC	ENSG00000174611				86	0	0	57	38	40
PPP2R3A	0	genome.wustl.edu	37	3	135863921	135863921	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	135863921	135863921	C	A	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	silent	c.3366	p.P1122	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				69	0	0	33	15	31.25
MSL2	0	genome.wustl.edu	37	3	135871511	135871511	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	135871511	135871511	T	G	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	missense	c.212	p.K71T	1.000	pfscan_Znf_RING	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				199	0	0	107	62	36.6864
PCCB	0	genome.wustl.edu	37	3	135974701	135974701	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	135974701	135974701	A	G	SNP	PCCB	ENST00000251654	human	ensembl	74_37	+1	known	missense	c.187	p.K63E	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_N	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054				128	0	0	74	26	26
PCCB	0	genome.wustl.edu	37	3	136046553	136046553	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	136046553	136046553	G	T	SNP	PCCB	ENST00000251654	human	ensembl	74_37	+1	known	missense	c.1377	p.E459D	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054				69	0	0	29	18	38.2979
STAG1	0	genome.wustl.edu	37	3	136240172	136240172	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	136240172	136240172	G	A	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	nonsense	c.559	p.R187*	1.000	pfam_STAG,superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007				94	0	0	85	37	30.3279
FBLN2	0	genome.wustl.edu	37	3	13655629	13655629	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	13655629	13655629	G	A	SNP	FBLN2	ENST00000404922	human	ensembl	74_37	+1	known	missense	c.1694	p.R565H	0.998	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_EG-like_dom,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd_dom,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520				72	0	0	33	18	35.2941
NCK1	0	genome.wustl.edu	37	3	136646968	136646968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	136646968	136646968	G	A	SNP	NCK1	ENST00000288986	human	ensembl	74_37	+1	known	missense	c.125	p.R42Q	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pirsf_Cytoplasmic_NCK,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pirsf_Cytoplasmic_NCK,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	NCK1	HGNC	ENSG00000158092				126	1	0.787402	62	46	42.5926
DZIP1L	0	genome.wustl.edu	37	3	137811252	137811252	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	137811252	137811252	G	A	SNP	DZIP1L	ENST00000327532	human	ensembl	74_37	-1	known	silent	c.843	p.V281	0.901	NULL	pfscan_Znf_C2H2	-	no_errors	DZIP1L	HGNC	ENSG00000158163				90	0	0	64	37	36.6337
ESYT3	0	genome.wustl.edu	37	3	138183346	138183346	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	138183346	138183346	G	A	SNP	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	missense	c.1075	p.E359K	0.998	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220				83	0	0	46	24	34.2857
PIK3CB	0	genome.wustl.edu	37	3	138453486	138453486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	138453486	138453486	C	T	SNP	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	missense	c.962	p.R321Q	0.998	smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				97	0	0	62	35	36.0825
COPB2	0	genome.wustl.edu	37	3	139085471	139085471	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	139085471	139085471	T	G	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.1823	p.K608T	1.000	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432				80	0	0	53	20	27.3973
FGD5P1	0	genome.wustl.edu	37	3	13978080	13978080	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	13978080	13978080	G	A	SNP	FGD5P1	ENST00000502451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.399	-	-	-	no_errors	FGD5P1	HGNC	ENSG00000250439				80	0	0	37	23	38.3333
TRIM42	0	genome.wustl.edu	37	3	140397213	140397213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	140397213	140397213	C	T	SNP	TRIM42	ENST00000286349	human	ensembl	74_37	+1	known	missense	c.142	p.R48W	0.046	NULL	pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Znf_B-box,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM42	HGNC	ENSG00000155890				201	0	0	118	64	35.1648
SLC25A36	0	genome.wustl.edu	37	3	140675425	140675425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	140675425	140675425	G	A	SNP	SLC25A36	ENST00000324194	human	ensembl	74_37	+1	known	missense	c.98	p.R33Q	0.995	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120				102	0	0	58	23	28.3951
SLC25A36	0	genome.wustl.edu	37	3	140675523	140675523	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	140675523	140675523	C	A	SNP	SLC25A36	ENST00000324194	human	ensembl	74_37	+1	known	missense	c.196	p.H66N	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120				145	0	0	92	38	29.2308
TFDP2	0	genome.wustl.edu	37	3	141682680	141682680	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	141682680	141682680	G	T	SNP	TFDP2	ENST00000489671	human	ensembl	74_37	-1	known	silent	c.858	p.V286	1.000	pfam_Transc_factor_DP_C,pirsf_Transcrpt_fac_DP	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcrpt_fac_DP	-	no_errors	TFDP2	HGNC	ENSG00000114126				168	0	0	93	49	34.507
TMEM43	0	genome.wustl.edu	37	3	14176277	14176277	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	14176277	14176277	C	T	SNP	TMEM43	ENST00000306077	human	ensembl	74_37	+1	known	silent	c.591	p.I197	0.978	pfam_TMEM43_fam	pfam_TMEM43_fam	-	no_errors	TMEM43	HGNC	ENSG00000170876				109	0	0	62	22	26.1905
LSM3	0	genome.wustl.edu	37	3	14223069	14223069	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	14223069	14223069	A	G	SNP	LSM3	ENST00000306024	human	ensembl	74_37	+1	known	missense	c.31	p.T11A	1.000	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	LSM3	HGNC	ENSG00000170860				192	0	0	114	39	25.4902
ATR	0	genome.wustl.edu	37	3	142231276	142231276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	142231276	142231276	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	missense	c.4678	p.D1560N	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				129	0	0	74	38	33.9286
ATR	0	genome.wustl.edu	37	3	142281952	142281952	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	142281952	142281952	C	A	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	splice_site	c.293-1	e4-1	1.000	-	-	-	no_errors	ATR	HGNC	ENSG00000175054				129	0	0	80	40	33.3333
CNTN6	0	genome.wustl.edu	37	3	1425079	1425079	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	1425079	1425079	T	G	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.2504	p.V835G	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				175	0	0	49	57	53.7736
TRPC1	0	genome.wustl.edu	37	3	142525010	142525010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	142525010	142525010	G	A	SNP	TRPC1	ENST00000476941	human	ensembl	74_37	+1	known	missense	c.2315	p.R772Q	1.000	tigrfam_TRP_channel	pfam_TRP_dom,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC1_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC1	HGNC	ENSG00000144935				82	0	0	51	28	35.443
U2SURP	0	genome.wustl.edu	37	3	142775251	142775251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	142775251	142775251	C	T	SNP	U2SURP	ENST00000473835	human	ensembl	74_37	+1	known	missense	c.3049	p.P1017S	1.000	NULL	pfam_Surp,pfam_RRM_dom,superfamily_Surp,superfamily_ENTH_VHS,smart_RRM_dom,smart_Surp,smart_CID_dom,pfscan_Surp,pfscan_RRM_dom	-	no_errors	U2SURP	HGNC	ENSG00000163714				31	0	0	21	11	34.375
SLC9A9	0	genome.wustl.edu	37	3	143271229	143271229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	143271229	143271229	G	A	SNP	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	missense	c.1064	p.S355L	0.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804				43	0	0	27	17	38.6364
SLC9A9	0	genome.wustl.edu	37	3	143550871	143550871	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	143550871	143550871	A	G	SNP	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	missense	c.368	p.I123T	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804				40	0	0	22	15	40.5405
C3orf58	0	genome.wustl.edu	37	3	143708552	143708552	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	143708552	143708552	G	T	SNP	C3orf58	ENST00000315691	human	ensembl	74_37	+1	known	nonsense	c.1162	p.E388*	1.000	NULL	NULL	-	no_errors	C3orf58	HGNC	ENSG00000181744				121	0	0	72	45	38.4615
GRIP2	0	genome.wustl.edu	37	3	14535218	14535218	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	14535218	14535218	G	T	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				15	0	0	10	7	41.1765
GRIP2	0	genome.wustl.edu	37	3	14561747	14561747	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	14561747	14561747	G	A	SNP	GRIP2	ENST00000273083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	GRIP2	HGNC	ENSG00000144596				59	0	0	33	3	8.33333
PLSCR4	0	genome.wustl.edu	37	3	145917772	145917772	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	145917772	145917772	T	G	SNP	PLSCR4	ENST00000354952	human	ensembl	74_37	-1	known	missense	c.452	p.Q151P	1.000	pfam_Scramblase	pfam_Scramblase	-	no_errors	PLSCR4	HGNC	ENSG00000114698				49	0	0	36	13	26.5306
CPB1	0	genome.wustl.edu	37	3	148577840	148577840	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148577840	148577840	C	A	SNP	CPB1	ENST00000476847	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	CPB1	HGNC	ENSG00000153002				47	0	0	29	15	34.0909
GYG1	0	genome.wustl.edu	37	3	148714244	148714244	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148714244	148714244	T	G	SNP	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	missense	c.299	p.F100C	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				128	0	0	67	33	33
HLTF	0	genome.wustl.edu	37	3	148789221	148789221	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148789221	148789221	T	G	SNP	HLTF	ENST00000310053	human	ensembl	74_37	-1	known	missense	c.712	p.T238P	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_SNF2_N,pfam_HIP116_Rad5p_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HIP116_Rad5p_N,smart_Helicase_ATP-bd,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HLTF	HGNC	ENSG00000071794				60	0	0	34	21	38.1818
HPS3	0	genome.wustl.edu	37	3	148868424	148868424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148868424	148868424	C	T	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	missense	c.1202	p.A401V	0.989	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				103	0	0	45	22	32.8358
CP	0	genome.wustl.edu	37	3	148927157	148927157	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148927157	148927157	C	A	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	nonsense	c.622	p.E208*	0.811	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				55	0	0	41	25	37.8788
CP	0	genome.wustl.edu	37	3	148928079	148928079	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	148928079	148928079	G	A	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.482	p.A161V	0.025	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457				128	0	0	80	37	31.6239
WWTR1	0	genome.wustl.edu	37	3	149238736	149238736	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	149238736	149238736	T	C	SNP	WWTR1	ENST00000360632	human	ensembl	74_37	-1	known	silent	c.1059	p.Q353	0.997	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWTR1	HGNC	ENSG00000018408				244	0	0	135	62	31.4721
TSC22D2	0	genome.wustl.edu	37	3	150176284	150176284	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	150176284	150176284	C	A	SNP	TSC22D2	ENST00000361875	human	ensembl	74_37	+1	known	missense	c.2204	p.S735Y	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D2	HGNC	ENSG00000196428				140	0	0	120	49	28.9941
SIAH2	0	genome.wustl.edu	37	3	150460058	150460058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	150460058	150460058	G	A	SNP	SIAH2	ENST00000312960	human	ensembl	74_37	-1	known	missense	c.845	p.S282L	1.000	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like,pfscan_Znf_RING,pfscan_Znf_SIAH	-	no_errors	SIAH2	HGNC	ENSG00000181788				108	0	0	49	32	39.5062
CLRN1	0	genome.wustl.edu	37	3	150659437	150659437	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	150659437	150659437	T	G	SNP	CLRN1	ENST00000328863	human	ensembl	74_37	-1	known	missense	c.365	p.N122T	0.998	NULL	NULL	-	no_errors	CLRN1	HGNC	ENSG00000163646				71	0	0	43	24	35.8209
P2RY14	0	genome.wustl.edu	37	3	150931482	150931482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	150931482	150931482	G	A	SNP	P2RY14	ENST00000309170	human	ensembl	74_37	-1	known	missense	c.623	p.A208V	0.817	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_P2Y14_rcpt,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY14	HGNC	ENSG00000174944				132	0	0	96	40	29.4118
P2RY13	0	genome.wustl.edu	37	3	151045839	151045839	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	151045839	151045839	C	T	SNP	P2RY13	ENST00000325602	human	ensembl	74_37	-1	known	silent	c.1005	p.K335	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_P2Y13_rcpt,prints_GPCR_Rhodpsn,prints_P2Y14_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	P2RY13	HGNC	ENSG00000181631				175	0	0	112	51	31.2883
MED12L	0	genome.wustl.edu	37	3	151127057	151127057	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	151127057	151127057	C	A	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	silent	c.5742	p.L1914	1.000	pfam_Mediator_Med12_catenin-bd	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				161	0	0	77	47	37.9032
IGSF10	0	genome.wustl.edu	37	3	151162770	151162770	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	151162770	151162770	A	C	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.4999	p.F1667V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				109	0	0	78	36	31.5789
IGSF10	0	genome.wustl.edu	37	3	151166641	151166641	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	151166641	151166641	T	G	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.1128	p.Q376H	0.536	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				95	0	0	55	33	37.5
AADAC	0	genome.wustl.edu	37	3	151542473	151542473	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	151542473	151542473	C	A	SNP	AADAC	ENST00000232892	human	ensembl	74_37	+1	known	missense	c.454	p.H152N	0.998	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	pfam_AB_hydrolase_3,pfam_CarbesteraseB,pirsf_Arylacetamide_deacetylase	-	no_errors	AADAC	HGNC	ENSG00000114771				34	0	0	19	10	34.4828
TMEM14E	0	genome.wustl.edu	37	3	152058590	152058590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	152058590	152058590	G	A	SNP	TMEM14E	ENST00000408960	human	ensembl	74_37	-1	known	missense	c.104	p.S35F	0.000	pfam_UPF0136_TM	pfam_UPF0136_TM	-	no_errors	TMEM14E	HGNC	ENSG00000221962				79	0	0	60	34	36.1702
DHX36	0	genome.wustl.edu	37	3	154002448	154002448	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	154002448	154002448	T	G	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.2216	p.K739T	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				22	0	0	18	11	37.931
DHX36	0	genome.wustl.edu	37	3	154002693	154002693	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	154002693	154002693	C	A	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.2115	p.M705I	1.000	pfam_Helicase-assoc_dom,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				83	0	0	52	34	39.5349
DHX36	0	genome.wustl.edu	37	3	154042185	154042185	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	154042185	154042185	C	A	SNP	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	missense	c.21	p.Q7H	1.000	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				29	0	0	12	5	29.4118
METTL6	0	genome.wustl.edu	37	3	15457386	15457386	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	15457386	15457386	G	A	SNP	METTL6	ENST00000383790	human	ensembl	74_37	-1	known	missense	c.424	p.L142F	1.000	pfam_Methyltransf_12,pfam_Methyltransf_11,pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pirsf_MeTrfase	-	no_errors	METTL6	HGNC	ENSG00000206562				119	0	0	68	33	32.6733
EAF1-AS1	0	genome.wustl.edu	37	3	15492986	15492986	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	15492986	15492986	C	A	SNP	EAF1-AS1	ENST00000608408	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	EAF1-AS1	HGNC	ENSG00000249786				265	0	0	130	64	32.9897
PLCH1	0	genome.wustl.edu	37	3	155282900	155282900	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	155282900	155282900	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	silent	c.837	p.T279	0.057	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				64	0	0	32	17	34.6939
PLCH1	0	genome.wustl.edu	37	3	155311814	155311814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	155311814	155311814	C	T	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.350	p.R117H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				79	0	0	43	16	27.1186
BTD	0	genome.wustl.edu	37	3	15686453	15686453	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	15686453	15686453	A	T	SNP	BTD	ENST00000303498	human	ensembl	74_37	+1	known	missense	c.1090	p.I364F	0.000	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814				169	1	0.588235	83	46	35.6589
BTD	0	genome.wustl.edu	37	3	15686848	15686848	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	15686848	15686848	C	T	SNP	BTD	ENST00000303498	human	ensembl	74_37	+1	known	silent	c.1485	p.I495	1.000	pirsf_Biotinidase_euk	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pirsf_Biotinidase_euk,pfscan_C-N_Hydrolase	-	no_errors	BTD	HGNC	ENSG00000169814				172	0	0	97	9	8.49057
VEPH1	0	genome.wustl.edu	37	3	156983335	156983335	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	156983335	156983335	G	T	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	missense	c.2245	p.L749M	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				89	0	0	67	24	26.3736
VEPH1	0	genome.wustl.edu	37	3	157081321	157081321	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	157081321	157081321	C	A	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	nonsense	c.1567	p.E523*	1.000	NULL	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				182	0	0	126	15	10.6383
PTX3	0	genome.wustl.edu	37	3	157154792	157154792	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	157154792	157154792	G	T	SNP	PTX3	ENST00000295927	human	ensembl	74_37	+1	known	missense	c.70	p.D24Y	0.439	NULL	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_LamG-like,prints_Pentaxin	-	no_errors	PTX3	HGNC	ENSG00000163661				155	0	0	95	45	32.1429
VEPH1	0	genome.wustl.edu	37	3	157188277	157188277	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	157188277	157188277	G	T	SNP	VEPH1	ENST00000362010	human	ensembl	74_37	-1	known	silent	c.180	p.I60	1.000	superfamily_ARM-type_fold	pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	VEPH1	HGNC	ENSG00000197415				220	0	0	110	67	37.8531
MLF1	0	genome.wustl.edu	37	3	158314734	158314734	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	158314734	158314734	C	T	SNP	MLF1	ENST00000392822	human	ensembl	74_37	+1	known	silent	c.372	p.F124	1.000	pfam_Myeloid_leukemia_factor	pfam_Myeloid_leukemia_factor	-	no_errors	MLF1	HGNC	ENSG00000178053				23	0	0	17	5	22.7273
MFSD1	0	genome.wustl.edu	37	3	158525240	158525240	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	158525240	158525240	G	T	SNP	MFSD1	ENST00000415822	human	ensembl	74_37	+1	known	missense	c.575	p.R192I	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	MFSD1	HGNC	ENSG00000118855				101	0	0	88	33	27.2727
SMC4	0	genome.wustl.edu	37	3	160122287	160122287	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	160122287	160122287	T	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	missense	c.682	p.L228V	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				48	0	0	39	27	40.9091
GALNT15	0	genome.wustl.edu	37	3	16237352	16237352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	16237352	16237352	C	T	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.625	p.R209W	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				83	0	0	43	22	33.8462
GALNT15	0	genome.wustl.edu	37	3	16242239	16242239	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	16242239	16242239	G	A	SNP	GALNT15	ENST00000339732	human	ensembl	74_37	+1	known	missense	c.820	p.A274T	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT15	HGNC	ENSG00000131386				82	0	0	37	27	42.1875
RFTN1	0	genome.wustl.edu	37	3	16475491	16475491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	16475491	16475491	C	T	SNP	RFTN1	ENST00000334133	human	ensembl	74_37	-1	known	missense	c.199	p.A67T	0.085	NULL	NULL	-	no_errors	RFTN1	HGNC	ENSG00000131378				115	0	0	49	24	32.8767
SI	0	genome.wustl.edu	37	3	164758812	164758812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	164758812	164758812	C	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.2075	p.R692H	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				152	0	0	100	44	30.5556
SI	0	genome.wustl.edu	37	3	164758856	164758856	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	164758856	164758856	C	T	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	silent	c.2031	p.Q677	0.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				141	0	0	110	47	29.9363
ZBBX	0	genome.wustl.edu	37	3	167086357	167086357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	167086357	167086357	G	A	SNP	ZBBX	ENST00000307529	human	ensembl	74_37	-1	known	missense	c.74	p.A25V	0.039	NULL	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC	ENSG00000169064				69	0	0	46	24	34.2857
SERPINI2	0	genome.wustl.edu	37	3	167185069	167185069	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	167185069	167185069	T	G	SNP	SERPINI2	ENST00000264677	human	ensembl	74_37	-1	known	missense	c.252	p.E84D	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINI2	HGNC	ENSG00000114204				41	0	0	28	18	39.1304
WDR49	0	genome.wustl.edu	37	3	167246875	167246875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	167246875	167246875	C	T	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.1315	p.D439N	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				79	0	0	48	13	21.3115
WDR49	0	genome.wustl.edu	37	3	167293770	167293770	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	167293770	167293770	C	A	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.422	p.S141I	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				204	0	0	102	60	37.037
GOLIM4	0	genome.wustl.edu	37	3	167750634	167750634	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	167750634	167750634	G	A	SNP	GOLIM4	ENST00000470487	human	ensembl	74_37	-1	known	nonsense	c.850	p.R284*	0.202	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905				164	0	0	72	36	33.3333
MECOM	0	genome.wustl.edu	37	3	168802737	168802737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	168802737	168802737	G	A	SNP	MECOM	ENST00000494292	human	ensembl	74_37	-1	known	missense	c.3653	p.A1218V	0.997	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	MECOM	HGNC	ENSG00000085276				176	0	0	105	49	31.8182
MECOM	0	genome.wustl.edu	37	3	169381209	169381209	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169381209	169381209	C	A	SNP	MECOM	ENST00000485957	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MECOM	HGNC	ENSG00000085276				19	0	0	2	2	50
ACTRT3	0	genome.wustl.edu	37	3	169485577	169485577	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169485577	169485577	A	G	SNP	ACTRT3	ENST00000330368	human	ensembl	74_37	-1	known	silent	c.762	p.C254	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT3	HGNC	ENSG00000184378				110	0	0	83	41	33.0645
MYNN	0	genome.wustl.edu	37	3	169496751	169496751	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169496751	169496751	G	T	SNP	MYNN	ENST00000349841	human	ensembl	74_37	+1	known	missense	c.462	p.E154D	0.999	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	MYNN	HGNC	ENSG00000085274				60	0	0	46	12	20.6897
LRRC34	0	genome.wustl.edu	37	3	169513321	169513321	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169513321	169513321	G	T	SNP	LRRC34	ENST00000446859	human	ensembl	74_37	-1	known	missense	c.1143	p.F381L	0.260	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757				48	0	0	39	17	30.3571
LRRC34	0	genome.wustl.edu	37	3	169525456	169525456	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169525456	169525456	C	T	SNP	LRRC34	ENST00000446859	human	ensembl	74_37	-1	known	missense	c.299	p.R100H	0.998	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC34	HGNC	ENSG00000171757				78	0	0	37	23	38.3333
LRRIQ4	0	genome.wustl.edu	37	3	169539922	169539922	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169539922	169539922	G	T	SNP	LRRIQ4	ENST00000340806	human	ensembl	74_37	+1	known	missense	c.213	p.K71N	0.005	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ4	HGNC	ENSG00000188306				161	0	0	91	40	30.5344
GPR160	0	genome.wustl.edu	37	3	169801785	169801785	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	169801785	169801785	T	C	SNP	GPR160	ENST00000355897	human	ensembl	74_37	+1	known	missense	c.25	p.C9R	0.942	NULL	pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR160	HGNC	ENSG00000173890				115	0	0	86	29	25.2174
RPL22L1	0	genome.wustl.edu	37	3	170584266	170584266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	170584266	170584266	C	T	SNP	RPL22L1	ENST00000295830	human	ensembl	74_37	-1	known	missense	c.272	p.R91H	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22L1	HGNC	ENSG00000163584				9	0	0	4	4	50
TNIK	0	genome.wustl.edu	37	3	170797352	170797352	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	170797352	170797352	A	G	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.3403	p.W1135R	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				37	0	0	36	6	14.2857
TNIK	0	genome.wustl.edu	37	3	170805225	170805225	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	170805225	170805225	T	C	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.2792	p.D931G	1.000	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				120	0	0	92	34	26.9841
TNIK	0	genome.wustl.edu	37	3	171087468	171087468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	171087468	171087468	C	T	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	missense	c.64	p.A22T	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				12	0	0	5	4	44.4444
PLD1	0	genome.wustl.edu	37	3	171427395	171427395	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	171427395	171427395	C	T	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.1016	p.R339Q	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				127	0	0	105	37	26.0563
PLD1	0	genome.wustl.edu	37	3	171453312	171453312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	171453312	171453312	G	A	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.404	p.A135V	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				112	0	0	80	26	24.5283
ECT2	0	genome.wustl.edu	37	3	172520655	172520655	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	172520655	172520655	A	C	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	missense	c.1898	p.N633T	1.000	NULL	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346				60	0	0	49	15	23.4375
NLGN1	0	genome.wustl.edu	37	3	173996827	173996827	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	173996827	173996827	G	T	SNP	NLGN1	ENST00000401917	human	ensembl	74_37	+1	known	missense	c.1156	p.D386Y	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN1	HGNC	ENSG00000169760				245	0	0	167	83	33.2
TBL1XR1	0	genome.wustl.edu	37	3	176769307	176769307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	176769307	176769307	C	T	SNP	TBL1XR1	ENST00000430069	human	ensembl	74_37	-1	known	missense	c.412	p.A138T	1.000	NULL	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1XR1	HGNC	ENSG00000177565				115	0	0	78	28	26.4151
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				94	0	0	70	28	28.5714
KCNMB3	0	genome.wustl.edu	37	3	178960766	178960766	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	178960766	178960766	C	A	SNP	KCNMB3	ENST00000314235	human	ensembl	74_37	-1	known	missense	c.766	p.V256L	0.000	NULL	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121				120	0	0	93	41	30.597
ZNF639	0	genome.wustl.edu	37	3	179047499	179047499	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179047499	179047499	A	C	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	missense	c.152	p.K51T	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				119	0	0	145	10	6.45161
ZNF639	0	genome.wustl.edu	37	3	179051273	179051273	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179051273	179051273	A	C	SNP	ZNF639	ENST00000326361	human	ensembl	74_37	+1	known	missense	c.521	p.K174T	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF639	HGNC	ENSG00000121864				102	0	0	56	38	40.4255
MFN1	0	genome.wustl.edu	37	3	179066690	179066690	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179066690	179066690	G	A	SNP	MFN1	ENST00000263969	human	ensembl	74_37	+1	known	silent	c.51	p.A17	0.374	NULL	pfam_Fzo/mitofusin_HR2,pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	MFN1	HGNC	ENSG00000171109				253	0	0	140	72	33.9623
GNB4	0	genome.wustl.edu	37	3	179132743	179132743	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179132743	179132743	G	A	SNP	GNB4	ENST00000232564	human	ensembl	74_37	-1	known	silent	c.360	p.I120	1.000	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,pfscan_WD40_repeat_dom	pirsf_Guanine_nucleotide-bd_bsu,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	GNB4	HGNC	ENSG00000114450				309	0	0	168	84	33.3333
MRPL47	0	genome.wustl.edu	37	3	179306726	179306726	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179306726	179306726	C	A	SNP	MRPL47	ENST00000476781	human	ensembl	74_37	-1	known	missense	c.687	p.K229N	0.999	NULL	pfam_Ribosomal_L47_mit	-	no_errors	MRPL47	HGNC	ENSG00000136522				98	0	0	54	38	41.3043
NDUFB5	0	genome.wustl.edu	37	3	179341795	179341795	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	179341795	179341795	T	G	SNP	NDUFB5	ENST00000259037	human	ensembl	74_37	+1	known	missense	c.537	p.I179M	0.997	pfam_NADH_UbQ_OxRdtase_B5_su	pfam_NADH_UbQ_OxRdtase_B5_su	-	no_errors	NDUFB5	HGNC	ENSG00000136521				119	0	0	74	36	32.7273
CCDC39	0	genome.wustl.edu	37	3	180366038	180366038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	180366038	180366038	G	A	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	missense	c.1277	p.T426I	0.998	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075				79	0	0	54	40	42.5532
ATP11B	0	genome.wustl.edu	37	3	182635851	182635851	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	182635851	182635851	A	G	SNP	ATP11B	ENST00000323116	human	ensembl	74_37	+1	known	missense	c.3493	p.S1165G	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP11B	HGNC	ENSG00000058063				107	0	0	79	41	34.1667
DCUN1D1	0	genome.wustl.edu	37	3	182679035	182679035	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	182679035	182679035	T	C	SNP	DCUN1D1	ENST00000292782	human	ensembl	74_37	-1	known	missense	c.499	p.N167D	1.000	pfam_PONY_dom	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D1	HGNC	ENSG00000043093				299	0	0	182	99	35.2313
DCUN1D1	0	genome.wustl.edu	37	3	182681709	182681709	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	182681709	182681709	A	G	SNP	DCUN1D1	ENST00000292782	human	ensembl	74_37	-1	known	missense	c.349	p.F117L	1.000	NULL	pfam_PONY_dom,superfamily_UBA-like	-	no_errors	DCUN1D1	HGNC	ENSG00000043093				96	0	0	71	27	27.551
MCF2L2	0	genome.wustl.edu	37	3	182946141	182946141	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	182946141	182946141	C	A	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	nonsense	c.2059	p.E687*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524				65	0	0	47	23	32.8571
B3GNT5	0	genome.wustl.edu	37	3	182988416	182988416	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	182988416	182988416	C	A	SNP	B3GNT5	ENST00000326505	human	ensembl	74_37	+1	known	nonsense	c.830	p.S277*	0.806	pfam_Glyco_trans_31	pfam_Glyco_trans_31,superfamily_Luciferase-like_dom	-	no_errors	B3GNT5	HGNC	ENSG00000176597				113	0	0	64	28	30.4348
KLHL6	0	genome.wustl.edu	37	3	183273245	183273245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183273245	183273245	C	T	SNP	KLHL6	ENST00000341319	human	ensembl	74_37	-1	known	missense	c.197	p.R66Q	0.668	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578				233	0	0	123	69	35.9375
YEATS2	0	genome.wustl.edu	37	3	183528314	183528314	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183528314	183528314	T	C	SNP	YEATS2	ENST00000305135	human	ensembl	74_37	+1	known	silent	c.4212	p.I1404	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	YEATS2	HGNC	ENSG00000163872				53	0	0	41	15	26.7857
EIF2B5	0	genome.wustl.edu	37	3	183854515	183854515	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183854515	183854515	A	C	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	missense	c.311	p.E104A	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				329	0	0	184	78	29.771
EIF2B5	0	genome.wustl.edu	37	3	183856022	183856022	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183856022	183856022	C	A	SNP	EIF2B5	ENST00000273783	human	ensembl	74_37	+1	known	silent	c.753	p.I251	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191				112	0	0	48	26	35.1351
DVL3	0	genome.wustl.edu	37	3	183884050	183884050	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183884050	183884050	A	G	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	silent	c.900	p.L300	0.952	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				136	0	0	76	35	31.5315
ECE2	0	genome.wustl.edu	37	3	183976237	183976237	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	183976237	183976237	C	T	SNP	ECE2	ENST00000324557	human	ensembl	74_37	+1	known	silent	c.642	p.G214	0.602	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12	-	no_errors	ECE2	HGNC	ENSG00000145194				275	0	0	125	59	32.0652
EIF4G1	0	genome.wustl.edu	37	3	184041688	184041688	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	184041688	184041688	G	T	SNP	EIF4G1	ENST00000352767	human	ensembl	74_37	+1	known	missense	c.2416	p.D806Y	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G1	HGNC	ENSG00000114867				147	0	0	76	43	36.1345
THPO	0	genome.wustl.edu	37	3	184090679	184090679	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	184090679	184090679	C	A	SNP	THPO	ENST00000204615	human	ensembl	74_37	-1	known	missense	c.684	p.K228N	1.000	NULL	pfam_EPO_TPO,superfamily_4_helix_cytokine-like_core,prints_Thrombopoeitin	-	no_errors	THPO	HGNC	ENSG00000090534				124	0	0	50	18	26.4706
CHRD	0	genome.wustl.edu	37	3	184102385	184102385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	184102385	184102385	C	T	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.1501	p.L501F	1.000	pfam_CHRD,smart_CHRD,pirsf_Chordin,pfscan_CHRD	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539				251	0	0	76	60	44.1176
SATB1	0	genome.wustl.edu	37	3	18427971	18427971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	18427971	18427971	C	T	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.1339	p.E447K	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				155	0	0	103	39	27.4648
EPHB3	0	genome.wustl.edu	37	3	184298943	184298943	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	184298943	184298943	G	A	SNP	EPHB3	ENST00000330394	human	ensembl	74_37	+1	known	missense	c.2722	p.A908T	1.000	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB3	HGNC	ENSG00000182580				176	1	0.564972	66	37	35.9223
EHHADH	0	genome.wustl.edu	37	3	184953175	184953175	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	184953175	184953175	C	A	SNP	EHHADH	ENST00000231887	human	ensembl	74_37	-1	known	missense	c.254	p.R85I	0.433	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790				62	0	0	29	27	48.2143
MAP3K13	0	genome.wustl.edu	37	3	185161334	185161334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	185161334	185161334	G	A	SNP	MAP3K13	ENST00000265026	human	ensembl	74_37	+1	known	missense	c.761	p.R254Q	0.998	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803				147	0	0	94	51	35.1724
IGF2BP2	0	genome.wustl.edu	37	3	185416116	185416116	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	185416116	185416116	G	A	SNP	IGF2BP2	ENST00000382199	human	ensembl	74_37	-1	known	nonsense	c.259	p.R87*	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP2	HGNC	ENSG00000073792				62	0	0	40	12	23.0769
ETV5	0	genome.wustl.edu	37	3	185797681	185797681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	185797681	185797681	G	A	SNP	ETV5	ENST00000537818	human	ensembl	74_37	-1	known	missense	c.701	p.A234V	0.968	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV5	HGNC	ENSG00000244405				111	0	0	81	42	34.1463
CRYGS	0	genome.wustl.edu	37	3	186257252	186257252	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	186257252	186257252	C	T	SNP	CRYGS	ENST00000307944	human	ensembl	74_37	-1	known	silent	c.156	p.R52	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGS	HGNC	ENSG00000213139				118	0	0	46	29	38.6667
KNG1	0	genome.wustl.edu	37	3	186445091	186445091	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	186445091	186445091	T	G	SNP	KNG1	ENST00000265023	human	ensembl	74_37	+1	known	missense	c.630	p.N210K	0.143	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889				108	0	0	74	37	33.3333
KNG1	0	genome.wustl.edu	37	3	186459654	186459654	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	186459654	186459654	T	C	SNP	KNG1	ENST00000265023	human	ensembl	74_37	+1	known	missense	c.1469	p.V490A	0.364	NULL	pfam_Prot_inh_cystat,smart_Prot_inh_cystat,prints_Kininogen	-	no_errors	KNG1	HGNC	ENSG00000113889				56	0	0	30	19	38.7755
MASP1	0	genome.wustl.edu	37	3	186954160	186954160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	186954160	186954160	C	T	SNP	MASP1	ENST00000296280	human	ensembl	74_37	-1	known	missense	c.1499	p.R500H	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1	-	no_errors	MASP1	HGNC	ENSG00000127241				115	0	0	48	31	39.2405
RTP4	0	genome.wustl.edu	37	3	187088673	187088673	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	187088673	187088673	C	T	SNP	RTP4	ENST00000259030	human	ensembl	74_37	+1	known	missense	c.253	p.R85C	0.158	NULL	NULL	-	no_errors	RTP4	HGNC	ENSG00000136514				77	0	0	37	8	17.7778
RTP4	0	genome.wustl.edu	37	3	187088944	187088944	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	187088944	187088944	A	C	SNP	RTP4	ENST00000259030	human	ensembl	74_37	+1	known	missense	c.524	p.K175T	0.000	NULL	NULL	-	no_errors	RTP4	HGNC	ENSG00000136514				80	0	0	48	10	17.2414
RTP2	0	genome.wustl.edu	37	3	187416459	187416459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	187416459	187416459	C	T	SNP	RTP2	ENST00000358241	human	ensembl	74_37	-1	known	missense	c.505	p.E169K	0.998	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471				80	0	0	51	22	30.137
TP63	0	genome.wustl.edu	37	3	189526302	189526302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	189526302	189526302	C	T	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.566	p.S189L	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282				107	0	0	54	42	43.75
LEPREL1	0	genome.wustl.edu	37	3	189691761	189691761	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	189691761	189691761	T	C	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	silent	c.1485	p.G495	0.986	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				262	1	0.380228	223	28	11.1554
LEPREL1	0	genome.wustl.edu	37	3	189700850	189700850	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	189700850	189700850	G	A	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	nonsense	c.1309	p.R437*	0.474	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				131	0	0	91	46	33.5766
LEPREL1	0	genome.wustl.edu	37	3	189702354	189702354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	189702354	189702354	C	T	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.1214	p.R405Q	0.988	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				111	0	0	96	33	25.5814
LEPREL1	0	genome.wustl.edu	37	3	189838069	189838069	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	189838069	189838069	T	G	SNP	LEPREL1	ENST00000319332	human	ensembl	74_37	-1	known	missense	c.452	p.Y151S	1.000	NULL	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	LEPREL1	HGNC	ENSG00000090530				28	0	0	10	6	37.5
IL1RAP	0	genome.wustl.edu	37	3	190326850	190326850	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	190326850	190326850	T	C	SNP	IL1RAP	ENST00000443369	human	ensembl	74_37	+1	known	silent	c.417	p.N139	0.914	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1RAP	HGNC	ENSG00000196083				109	0	0	95	41	30.1471
UTS2B	0	genome.wustl.edu	37	3	190993102	190993102	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	190993102	190993102	C	T	SNP	UTS2B	ENST00000425357	human	ensembl	74_37	-1	known	missense	c.235	p.E79K	0.000	NULL	NULL	-	no_errors	UTS2B	HGNC	ENSG00000188958				157	0	0	110	60	35.2941
MB21D2	0	genome.wustl.edu	37	3	192517304	192517304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	192517304	192517304	A	G	SNP	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	missense	c.347	p.M116T	1.000	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				97	0	0	53	23	30.2632
ATP13A4	0	genome.wustl.edu	37	3	193176841	193176841	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	193176841	193176841	C	A	SNP	ATP13A4	ENST00000295548	human	ensembl	74_37	-1	known	missense	c.1703	p.R568I	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				169	1	0.588235	98	42	30
ATP13A4	0	genome.wustl.edu	37	3	193182749	193182749	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	193182749	193182749	T	G	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.1441	p.N481H	0.998	pfam_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				185	0	0	93	45	32.6087
ATP13A4	0	genome.wustl.edu	37	3	193232644	193232644	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	193232644	193232644	C	A	SNP	ATP13A4	ENST00000342695	human	ensembl	74_37	-1	known	missense	c.77	p.R26L	1.000	pfam_ATPase_P-typ_Cation_typ_V,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A4	HGNC	ENSG00000127249				97	0	0	46	17	26.9841
ATP13A3	0	genome.wustl.edu	37	3	194140694	194140694	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	194140694	194140694	A	C	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.3316	p.F1106V	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				11	0	0	13	12	48
ATP13A3	0	genome.wustl.edu	37	3	194169269	194169269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	194169269	194169269	C	T	SNP	ATP13A3	ENST00000256031	human	ensembl	74_37	-1	known	missense	c.1067	p.R356Q	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A3	HGNC	ENSG00000133657				111	0	0	51	28	35.443
TMEM44	0	genome.wustl.edu	37	3	194349195	194349195	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	194349195	194349195	A	C	SNP	TMEM44	ENST00000392432	human	ensembl	74_37	-1	known	missense	c.181	p.S61A	0.976	NULL	NULL	-	no_errors	TMEM44	HGNC	ENSG00000145014				34	0	0	15	8	34.7826
MUC4	0	genome.wustl.edu	37	3	195538749	195538749	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	195538749	195538749	T	C	SNP	MUC4	ENST00000478685	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.034	-	-	-	no_errors	MUC4	HGNC	ENSG00000145113				35	0	0	13	16	55.1724
TNK2	0	genome.wustl.edu	37	3	195613863	195613863	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	195613863	195613863	C	A	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.408	p.K136N	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				204	0	0	87	29	25
TFRC	0	genome.wustl.edu	37	3	195787075	195787075	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	195787075	195787075	C	T	SNP	TFRC	ENST00000360110	human	ensembl	74_37	-1	known	silent	c.1512	p.T504	0.000	pfam_Peptidase_M28	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	TFRC	HGNC	ENSG00000072274				36	0	0	22	13	37.1429
SLC51A	0	genome.wustl.edu	37	3	195955063	195955063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	195955063	195955063	C	T	SNP	SLC51A	ENST00000296327	human	ensembl	74_37	+1	known	missense	c.440	p.T147M	0.979	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	SLC51A	HGNC	ENSG00000163959				305	0	0	136	60	30.6122
RNF168	0	genome.wustl.edu	37	3	196214416	196214416	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196214416	196214416	C	A	SNP	RNF168	ENST00000318037	human	ensembl	74_37	-1	known	nonsense	c.412	p.E138*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961				180	0	0	100	53	34.6405
WDR53	0	genome.wustl.edu	37	3	196287914	196287914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196287914	196287914	G	A	SNP	WDR53	ENST00000332629	human	ensembl	74_37	-1	known	missense	c.433	p.R145W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798				169	0	0	111	36	24.4898
WDR53	0	genome.wustl.edu	37	3	196288018	196288018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196288018	196288018	G	A	SNP	WDR53	ENST00000332629	human	ensembl	74_37	-1	known	missense	c.329	p.A110V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR53	HGNC	ENSG00000185798				216	0	0	133	42	24
FBXO45	0	genome.wustl.edu	37	3	196311019	196311019	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196311019	196311019	C	T	SNP	FBXO45	ENST00000311630	human	ensembl	74_37	+1	known	nonsense	c.691	p.R231*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_F-box_dom,superfamily_ConA-like_lec_gl_sf,superfamily_F-box_dom,smart_F-box_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_F-box_dom	-	no_errors	FBXO45	HGNC	ENSG00000174013				79	0	0	48	25	34.2466
PIGX	0	genome.wustl.edu	37	3	196457961	196457961	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196457961	196457961	T	G	SNP	PIGX	ENST00000296333	human	ensembl	74_37	+1	known	missense	c.685	p.S229A	0.997	pfam_PIG-X/PBN1,smart_PIG-X/PBN1	pfam_PIG-X/PBN1,smart_PIG-X/PBN1	-	no_errors	PIGX	HGNC	ENSG00000163964				34	0	0	32	15	31.9149
DLG1	0	genome.wustl.edu	37	3	196812540	196812540	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196812540	196812540	A	C	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	missense	c.1848	p.I616M	0.993	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pirsf_M-assoc_guanylate_kinase,pfscan_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				135	1	0.735294	94	45	32.3741
DLG1	0	genome.wustl.edu	37	3	196888575	196888575	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	196888575	196888575	A	G	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	missense	c.518	p.V173A	1.000	pfam_MAGUK_PEST_N,pirsf_M-assoc_guanylate_kinase	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				32	0	0	16	9	36
EFHB	0	genome.wustl.edu	37	3	19924060	19924060	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	19924060	19924060	C	A	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	missense	c.2310	p.K770N	0.819	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576				26	0	0	17	5	22.7273
NR1D2	0	genome.wustl.edu	37	3	24003483	24003483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	24003483	24003483	G	A	SNP	NR1D2	ENST00000312521	human	ensembl	74_37	+1	known	missense	c.533	p.R178H	1.000	NULL	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR1D2	HGNC	ENSG00000174738				50	0	0	31	16	34.0426
LINC00691	0	genome.wustl.edu	37	3	24138650	24138650	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	24138650	24138650	G	A	SNP	LINC00691	ENST00000436123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.303	-	-	-	no_errors	LINC00691	HGNC	ENSG00000224074				24	0	0	21	3	12.5
THRB	0	genome.wustl.edu	37	3	24169075	24169075	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	24169075	24169075	G	T	SNP	THRB	ENST00000356447	human	ensembl	74_37	-1	known	silent	c.1059	p.I353	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				185	1	0.537634	146	21	12.5749
THRB	0	genome.wustl.edu	37	3	24188225	24188225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	24188225	24188225	C	T	SNP	THRB	ENST00000356447	human	ensembl	74_37	-1	known	missense	c.473	p.R158Q	0.983	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090				107	0	0	61	40	39.604
RARB	0	genome.wustl.edu	37	3	25542770	25542770	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	25542770	25542770	A	C	SNP	RARB	ENST00000404969	human	ensembl	74_37	+1	known	missense	c.425	p.Y142S	1.000	pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Nuc_orph_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	RARB	HGNC	ENSG00000077092				109	0	0	58	31	34.8315
LRRC3B	0	genome.wustl.edu	37	3	26751587	26751587	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	26751587	26751587	A	C	SNP	LRRC3B	ENST00000396641	human	ensembl	74_37	+1	known	missense	c.424	p.I142L	0.996	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC3B	HGNC	ENSG00000179796				61	0	0	31	10	24.3902
SLC4A7	0	genome.wustl.edu	37	3	27439829	27439829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	27439829	27439829	G	A	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.2443	p.R815C	0.957	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				119	0	0	67	41	37.963
SLC4A7	0	genome.wustl.edu	37	3	27446338	27446338	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	27446338	27446338	A	C	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	missense	c.2058	p.I686M	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				51	0	0	35	17	32.6923
SLC4A7	0	genome.wustl.edu	37	3	27465554	27465554	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	27465554	27465554	C	A	SNP	SLC4A7	ENST00000454389	human	ensembl	74_37	-1	known	nonsense	c.1240	p.E414*	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A7	HGNC	ENSG00000033867				75	0	0	46	27	36.9863
ZCWPW2	0	genome.wustl.edu	37	3	28454570	28454570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	28454570	28454570	A	C	SNP	ZCWPW2	ENST00000383768	human	ensembl	74_37	+1	known	missense	c.11	p.E4A	0.055	NULL	pfam_Znf_CW,pfam_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559				52	0	0	52	23	30.6667
ZCWPW2	0	genome.wustl.edu	37	3	28562602	28562602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	28562602	28562602	G	A	SNP	ZCWPW2	ENST00000383768	human	ensembl	74_37	+1	known	missense	c.904	p.E302K	0.778	NULL	pfam_Znf_CW,pfam_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559				30	0	0	16	10	38.4615
RBMS3	0	genome.wustl.edu	37	3	29529985	29529985	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	29529985	29529985	G	A	SNP	RBMS3	ENST00000383767	human	ensembl	74_37	+1	known	missense	c.302	p.C101Y	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS3	HGNC	ENSG00000144642				64	0	0	48	34	41.4634
RBMS3	0	genome.wustl.edu	37	3	29628640	29628640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	29628640	29628640	G	A	SNP	RBMS3	ENST00000383767	human	ensembl	74_37	+1	known	missense	c.343	p.A115T	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA	-	no_errors	RBMS3	HGNC	ENSG00000144642				68	0	0	45	15	25
GADL1	0	genome.wustl.edu	37	3	30842400	30842400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	30842400	30842400	G	A	SNP	GADL1	ENST00000282538	human	ensembl	74_37	-1	known	missense	c.1231	p.R411C	0.982	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GADL1	HGNC	ENSG00000144644				81	0	0	50	21	29.5775
IL5RA	0	genome.wustl.edu	37	3	3137010	3137010	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	3137010	3137010	T	C	SNP	IL5RA	ENST00000256452	human	ensembl	74_37	-1	known	missense	c.828	p.I276M	0.002	superfamily_Fibronectin_type3	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL5RA	HGNC	ENSG00000091181				49	0	0	17	16	48.4848
ZNF860	0	genome.wustl.edu	37	3	32031257	32031257	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	32031257	32031257	C	A	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	missense	c.686	p.S229Y	0.240	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385				98	0	0	32	76	70.3704
ZNF860	0	genome.wustl.edu	37	3	32032333	32032333	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	32032333	32032333	C	A	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	missense	c.1762	p.H588N	0.972	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385				12	0	0	19	5	20.8333
DYNC1LI1	0	genome.wustl.edu	37	3	32568352	32568352	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	32568352	32568352	C	T	SNP	DYNC1LI1	ENST00000273130	human	ensembl	74_37	-1	known	missense	c.1511	p.R504Q	1.000	pfam_Dynein_light_int_chain	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635				125	0	0	75	26	25.7426
TRIM71	0	genome.wustl.edu	37	3	32932065	32932065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	32932065	32932065	G	A	SNP	TRIM71	ENST00000383763	human	ensembl	74_37	+1	known	missense	c.1369	p.D457N	1.000	NULL	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM71	HGNC	ENSG00000206557				176	0	0	87	35	28.6885
SUSD5	0	genome.wustl.edu	37	3	33194681	33194681	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	33194681	33194681	A	C	SNP	SUSD5	ENST00000309558	human	ensembl	74_37	-1	known	silent	c.1443	p.S481	0.470	NULL	pfam_Link,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Link,pfscan_Link,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD5	HGNC	ENSG00000173705				58	0	0	31	19	38
ARPP21	0	genome.wustl.edu	37	3	35748466	35748466	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	35748466	35748466	A	G	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	missense	c.687	p.I229M	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				77	0	0	52	24	31.5789
ARPP21	0	genome.wustl.edu	37	3	35748563	35748563	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	35748563	35748563	G	T	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	nonsense	c.784	p.E262*	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				76	0	0	53	19	26.3889
STAC	0	genome.wustl.edu	37	3	36570207	36570207	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	36570207	36570207	C	A	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.940	p.L314I	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				26	0	0	14	15	51.7241
DCLK3	0	genome.wustl.edu	37	3	36779482	36779482	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	36779482	36779482	C	A	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	missense	c.669	p.K223N	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				158	0	0	84	49	36.8421
TRANK1	0	genome.wustl.edu	37	3	36874329	36874329	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	36874329	36874329	C	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	nonsense	c.6613	p.E2205*	0.108	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				58	0	0	34	17	33.3333
TRANK1	0	genome.wustl.edu	37	3	36875232	36875232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	36875232	36875232	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	missense	c.5710	p.R1904C	0.002	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016				162	0	0	79	30	27.5229
GOLGA4	0	genome.wustl.edu	37	3	37366074	37366074	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	37366074	37366074	G	T	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.2697	p.Q899H	0.227	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				81	0	0	61	7	10.2941
VILL	0	genome.wustl.edu	37	3	38039783	38039783	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38039783	38039783	C	T	SNP	VILL	ENST00000283713	human	ensembl	74_37	+1	known	silent	c.870	p.G290	0.995	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				112	0	0	50	21	29.5775
PLCD1	0	genome.wustl.edu	37	3	38051969	38051969	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38051969	38051969	C	T	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	missense	c.938	p.R313H	0.692	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091				86	0	0	47	4	7.84314
ACAA1	0	genome.wustl.edu	37	3	38164477	38164477	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38164477	38164477	T	C	SNP	ACAA1	ENST00000451419	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ACAA1	HGNC	ENSG00000060971				47	0	0	25	8	24.2424
SCN5A	0	genome.wustl.edu	37	3	38593041	38593041	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38593041	38593041	G	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4822	p.L1608I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				154	0	0	62	31	33.3333
SCN5A	0	genome.wustl.edu	37	3	38628975	38628975	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38628975	38628975	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.2352	p.F784	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				62	0	0	27	24	47.0588
SCN10A	0	genome.wustl.edu	37	3	38793713	38793713	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38793713	38793713	G	A	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	silent	c.1752	p.V584	0.859	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				149	0	0	65	25	27.7778
SCN11A	0	genome.wustl.edu	37	3	38961476	38961476	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	38961476	38961476	C	A	SNP	SCN11A	ENST00000302328	human	ensembl	74_37	-1	known	missense	c.909	p.K303N	0.818	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN11A	HGNC	ENSG00000168356				68	0	0	51	24	32
XIRP1	0	genome.wustl.edu	37	3	39229433	39229433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	39229433	39229433	C	T	SNP	XIRP1	ENST00000340369	human	ensembl	74_37	-1	known	missense	c.1504	p.E502K	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP1	HGNC	ENSG00000168334				225	0	0	100	51	33.7748
CCR8	0	genome.wustl.edu	37	3	39373970	39373970	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	39373970	39373970	C	A	SNP	CCR8	ENST00000326306	human	ensembl	74_37	+1	known	missense	c.148	p.L50I	0.944	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR8,prints_Chemokine_CXCR4,prints_Brdyknn_rcpt	-	no_errors	CCR8	HGNC	ENSG00000179934				241	0	0	179	24	11.8227
ZNF621	0	genome.wustl.edu	37	3	40571778	40571778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	40571778	40571778	A	G	SNP	ZNF621	ENST00000339296	human	ensembl	74_37	+1	known	missense	c.230	p.D77G	0.973	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF621	HGNC	ENSG00000172888				123	0	0	79	5	5.95238
CTNNB1	0	genome.wustl.edu	37	3	41277291	41277291	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	41277291	41277291	G	A	SNP	CTNNB1	ENST00000349496	human	ensembl	74_37	+1	known	missense	c.1760	p.R587Q	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,prints_Beta-catenin	-	no_errors	CTNNB1	HGNC	ENSG00000168036				202	0	0	146	58	28.4314
ULK4	0	genome.wustl.edu	37	3	41756778	41756778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	41756778	41756778	C	T	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	missense	c.2585	p.R862Q	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				74	0	0	60	23	27.7108
ULK4	0	genome.wustl.edu	37	3	41957545	41957545	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	41957545	41957545	C	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	splice_site	c.728-1	e7-1	0.987	-	-	-	no_errors	ULK4	HGNC	ENSG00000168038				56	0	0	40	18	31.0345
CCK	0	genome.wustl.edu	37	3	42305056	42305056	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42305056	42305056	C	T	SNP	CCK	ENST00000334681	human	ensembl	74_37	-1	known	missense	c.67	p.V23M	0.000	pfam_Gastrin	pfam_Gastrin,smart_Gastrin	-	no_errors	CCK	HGNC	ENSG00000187094				32	0	0	22	8	26.6667
NKTR	0	genome.wustl.edu	37	3	42680746	42680746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42680746	42680746	G	A	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.3550	p.E1184K	0.265	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				106	0	0	55	27	32.9268
NKTR	0	genome.wustl.edu	37	3	42684043	42684043	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42684043	42684043	G	A	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	missense	c.4097	p.R1366Q	0.997	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				108	0	0	63	33	34.375
ZBTB47	0	genome.wustl.edu	37	3	42705409	42705409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42705409	42705409	G	A	SNP	ZBTB47	ENST00000232974	human	ensembl	74_37	+1	known	missense	c.1858	p.D620N	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB47	HGNC	ENSG00000114853				36	0	0	14	4	22.2222
KLHL40	0	genome.wustl.edu	37	3	42730438	42730438	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42730438	42730438	G	A	SNP	KLHL40	ENST00000287777	human	ensembl	74_37	+1	known	missense	c.1499	p.R500H	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL40	HGNC	ENSG00000157119				90	0	0	49	15	23.4375
CYP8B1	0	genome.wustl.edu	37	3	42916094	42916094	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42916094	42916094	G	A	SNP	CYP8B1	ENST00000316161	human	ensembl	74_37	-1	known	silent	c.1215	p.Y405	0.697	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP8B1	HGNC	ENSG00000180432				277	0	0	140	56	28.5714
ZNF662	0	genome.wustl.edu	37	3	42956704	42956704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	42956704	42956704	G	A	SNP	ZNF662	ENST00000328199	human	ensembl	74_37	+1	known	missense	c.1217	p.R406K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF662	HGNC	ENSG00000182983				99	0	0	66	33	33.3333
POMGNT2	0	genome.wustl.edu	37	3	43121449	43121449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	43121449	43121449	G	A	SNP	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	missense	c.1475	p.A492V	1.000	superfamily_Fibronectin_type3	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647				149	0	0	65	33	33.6735
ZNF445	0	genome.wustl.edu	37	3	44490137	44490137	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44490137	44490137	C	T	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	silent	c.1026	p.A342	0.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				107	0	0	72	33	31.4286
ZNF445	0	genome.wustl.edu	37	3	44490186	44490186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44490186	44490186	T	C	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	missense	c.977	p.E326G	0.030	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219				64	0	0	41	15	26.7857
ZNF852	0	genome.wustl.edu	37	3	44541093	44541093	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44541093	44541093	G	A	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	silent	c.1176	p.F392	0.892	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				76	0	0	34	15	30.6122
ZNF852	0	genome.wustl.edu	37	3	44541327	44541327	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44541327	44541327	G	T	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	silent	c.942	p.L314	0.080	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				83	0	0	39	26	40
ZNF852	0	genome.wustl.edu	37	3	44541481	44541481	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44541481	44541481	C	A	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	missense	c.788	p.R263I	0.995	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				44	0	0	26	11	29.7297
ZNF852	0	genome.wustl.edu	37	3	44544100	44544100	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44544100	44544100	C	T	SNP	ZNF852	ENST00000436261	human	ensembl	74_37	-1	known	missense	c.76	p.A26T	0.000	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF852	HGNC	ENSG00000178917				33	0	0	19	7	26.9231
ZKSCAN7	0	genome.wustl.edu	37	3	44612641	44612641	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44612641	44612641	T	C	SNP	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	missense	c.2039	p.V680A	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				184	0	0	102	49	32.4503
ZKSCAN7	0	genome.wustl.edu	37	3	44612818	44612818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44612818	44612818	G	A	SNP	ZKSCAN7	ENST00000273320	human	ensembl	74_37	+1	known	missense	c.2216	p.R739Q	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN7	HGNC	ENSG00000196345				149	0	0	80	33	29.2035
ZNF35	0	genome.wustl.edu	37	3	44700935	44700935	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44700935	44700935	G	A	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	silent	c.1080	p.K360	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				79	0	0	44	21	32.3077
ZNF35	0	genome.wustl.edu	37	3	44700985	44700985	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44700985	44700985	T	G	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	missense	c.1130	p.L377R	0.887	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				104	0	0	42	28	40
ZNF35	0	genome.wustl.edu	37	3	44701252	44701252	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44701252	44701252	G	T	SNP	ZNF35	ENST00000396056	human	ensembl	74_37	+1	known	missense	c.1397	p.R466I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF35	HGNC	ENSG00000169981				128	0	0	69	29	29.5918
ZNF502	0	genome.wustl.edu	37	3	44763241	44763241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44763241	44763241	C	T	SNP	ZNF502	ENST00000296091	human	ensembl	74_37	+1	known	missense	c.932	p.T311M	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF502	HGNC	ENSG00000196653				288	0	0	132	79	37.4408
KIF15	0	genome.wustl.edu	37	3	44816777	44816777	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44816777	44816777	C	T	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	nonsense	c.94	p.R32*	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				173	0	0	97	30	23.622
KIF15	0	genome.wustl.edu	37	3	44816783	44816783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	44816783	44816783	C	T	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.100	p.R34C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808				176	0	0	102	33	24.4444
EXOSC7	0	genome.wustl.edu	37	3	45038655	45038655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	45038655	45038655	C	T	SNP	EXOSC7	ENST00000265564	human	ensembl	74_37	+1	known	missense	c.331	p.R111W	1.000	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC7	HGNC	ENSG00000075914				171	0	0	89	39	30.4688
CCR9	0	genome.wustl.edu	37	3	45943167	45943167	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	45943167	45943167	A	C	SNP	CCR9	ENST00000357632	human	ensembl	74_37	+1	known	missense	c.887	p.D296A	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_CCR9,prints_Chemokine_rcpt,prints_Chemokine_CCR7,prints_ATII_rcpt,prints_Chemokine_CCRL1,prints_Chemokine_CXCR4	-	no_errors	CCR9	HGNC	ENSG00000173585				141	0	0	59	31	34.4444
CXCR6	0	genome.wustl.edu	37	3	45988319	45988319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	45988319	45988319	T	C	SNP	CXCR6	ENST00000304552	human	ensembl	74_37	+1	known	missense	c.346	p.S116P	0.879	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR6,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CXCR4	-	no_errors	CXCR6	HGNC	ENSG00000172215				397	0	0	243	83	25.4601
PRSS50	0	genome.wustl.edu	37	3	46754462	46754462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	46754462	46754462	G	A	SNP	PRSS50	ENST00000315170	human	ensembl	74_37	-1	known	missense	c.850	p.P284S	0.006	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS50	HGNC	ENSG00000206549				322	0	0	155	57	26.8868
SETD2	0	genome.wustl.edu	37	3	47125869	47125869	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47125869	47125869	T	C	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.5401	p.I1801V	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				34	0	0	30	9	23.0769
SETD2	0	genome.wustl.edu	37	3	47164507	47164507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47164507	47164507	C	T	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.1619	p.R540Q	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				135	1	0.735294	98	52	34.6667
KIF9	0	genome.wustl.edu	37	3	47278109	47278109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47278109	47278109	C	T	SNP	KIF9	ENST00000265529	human	ensembl	74_37	-1	known	missense	c.1925	p.G642D	0.989	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF9	HGNC	ENSG00000088727				59	0	0	21	16	43.2432
SMARCC1	0	genome.wustl.edu	37	3	47651782	47651782	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47651782	47651782	G	A	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	silent	c.2817	p.R939	0.996	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				302	0	0	137	74	35.0711
SMARCC1	0	genome.wustl.edu	37	3	47730897	47730897	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47730897	47730897	T	C	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	missense	c.1243	p.T415A	0.987	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				55	0	0	34	7	17.0732
SMARCC1	0	genome.wustl.edu	37	3	47734780	47734780	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47734780	47734780	C	A	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	missense	c.1176	p.K392N	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				93	0	0	70	23	24.7312
DHX30	0	genome.wustl.edu	37	3	47891144	47891144	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47891144	47891144	A	G	SNP	DHX30	ENST00000445061	human	ensembl	74_37	+1	known	silent	c.3216	p.R1072	0.999	pfam_DUF1605	pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX30	HGNC	ENSG00000132153				116	0	0	43	37	46.25
MAP4	0	genome.wustl.edu	37	3	47950746	47950746	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47950746	47950746	C	T	SNP	MAP4	ENST00000264724	human	ensembl	74_37	-1	known	missense	c.986	p.R329Q	0.000	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849				142	0	0	87	30	25.641
MAP4	0	genome.wustl.edu	37	3	47951028	47951028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	47951028	47951028	T	C	SNP	MAP4	ENST00000264724	human	ensembl	74_37	-1	known	missense	c.704	p.D235G	0.018	NULL	pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP4	HGNC	ENSG00000047849				240	0	0	134	99	42.4893
CAMP	0	genome.wustl.edu	37	3	48266793	48266793	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	48266793	48266793	G	T	SNP	CAMP	ENST00000296435	human	ensembl	74_37	+1	known	missense	c.401	p.R134I	0.000	NULL	pfam_Cathelicidin,pfam_Cathlecidin_C	-	no_errors	CAMP	HGNC	ENSG00000164047				266	0	0	152	73	32.4444
FBXW12	0	genome.wustl.edu	37	3	48420978	48420978	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	48420978	48420978	T	C	SNP	FBXW12	ENST00000296438	human	ensembl	74_37	+1	known	missense	c.704	p.V235A	0.000	superfamily_Quino_amine_DH_bsu	pfam_F-box_dom,superfamily_Quino_amine_DH_bsu,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXW12	HGNC	ENSG00000164049				311	0	0	152	83	35.3191
PLXNB1	0	genome.wustl.edu	37	3	48465339	48465339	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	48465339	48465339	C	T	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	missense	c.682	p.A228T	0.998	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050				70	0	0	34	9	20.9302
COL7A1	0	genome.wustl.edu	37	3	48626118	48626118	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	48626118	48626118	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	silent	c.2544	p.V848	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270				105	0	0	59	32	35.1648
CELSR3	0	genome.wustl.edu	37	3	48694593	48694593	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	48694593	48694593	A	C	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.3937	p.F1313V	1.000	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				70	0	0	30	16	34.7826
ARIH2	0	genome.wustl.edu	37	3	49006041	49006041	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49006041	49006041	G	T	SNP	ARIH2	ENST00000356401	human	ensembl	74_37	+1	known	nonsense	c.613	p.E205*	1.000	NULL	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC,pfscan_Znf_RING	-	no_errors	ARIH2	HGNC	ENSG00000177479				215	0	0	128	62	32.6316
LAMB2	0	genome.wustl.edu	37	3	49162014	49162014	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49162014	49162014	C	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	silent	c.3141	p.P1047	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				56	0	0	16	10	38.4615
USP4	0	genome.wustl.edu	37	3	49321951	49321951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49321951	49321951	C	A	SNP	USP4	ENST00000265560	human	ensembl	74_37	-1	known	missense	c.2338	p.D780Y	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP4	HGNC	ENSG00000114316				187	0	0	80	54	40.2985
DAG1	0	genome.wustl.edu	37	3	49548223	49548223	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49548223	49548223	T	G	SNP	DAG1	ENST00000308775	human	ensembl	74_37	+1	known	missense	c.256	p.L86V	1.000	superfamily_Cadherin-like,smart_Cadg	pfam_DAG1,superfamily_Alpha-dystroglycan_domain_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	DAG1	HGNC	ENSG00000173402				49	0	0	26	17	39.5349
BSN	0	genome.wustl.edu	37	3	49690676	49690676	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49690676	49690676	T	G	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	nonsense	c.3687	p.Y1229*	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				67	0	0	26	12	31.5789
BSN	0	genome.wustl.edu	37	3	49693126	49693126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49693126	49693126	G	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.6137	p.R2046H	0.999	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				203	0	0	97	45	31.6901
AMIGO3	0	genome.wustl.edu	37	3	49755971	49755971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49755971	49755971	C	T	SNP	AMIGO3	ENST00000320431	human	ensembl	74_37	-1	known	missense	c.928	p.A310T	0.586	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AMIGO3	HGNC	ENSG00000176020				101	0	0	37	31	45.5882
TRAIP	0	genome.wustl.edu	37	3	49879261	49879261	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	49879261	49879261	C	A	SNP	TRAIP	ENST00000331456	human	ensembl	74_37	-1	known	missense	c.615	p.K205N	1.000	superfamily_Prefoldin	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763				52	0	0	39	16	29.0909
RBM6	0	genome.wustl.edu	37	3	50102503	50102503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50102503	50102503	G	A	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2626	p.D876N	1.000	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				236	0	0	151	64	29.7674
RBM6	0	genome.wustl.edu	37	3	50103758	50103758	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50103758	50103758	G	T	SNP	RBM6	ENST00000266022	human	ensembl	74_37	+1	known	missense	c.2766	p.Q922H	0.928	NULL	pfam_G_patch_dom,smart_RRM_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM6	HGNC	ENSG00000004534				95	0	0	52	22	29.7297
RBM5	0	genome.wustl.edu	37	3	50150695	50150695	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50150695	50150695	C	A	SNP	RBM5	ENST00000474470	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RBM5	HGNC	ENSG00000003756				11	0	0	6	3	33.3333
SLC38A3	0	genome.wustl.edu	37	3	50254684	50254684	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50254684	50254684	A	G	SNP	SLC38A3	ENST00000414604	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338				44	0	0	18	3	14.2857
C3orf18	0	genome.wustl.edu	37	3	50597097	50597097	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50597097	50597097	G	T	SNP	C3orf18	ENST00000357203	human	ensembl	74_37	-1	known	silent	c.480	p.I160	1.000	NULL	NULL	-	no_errors	C3orf18	HGNC	ENSG00000088543				12	0	0	5	4	44.4444
HEMK1	0	genome.wustl.edu	37	3	50608616	50608616	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50608616	50608616	C	T	SNP	HEMK1	ENST00000232854	human	ensembl	74_37	+1	known	silent	c.81	p.S27	0.861	NULL	pfam_Small_mtfrase_dom,pfam_RNA_methylase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_RNA_MeTrfase_RsmD,pfam_Methyltransf_11,prints_D21N6_MeTrfase,tigrfam_Release_fac_Glu-N5_MeTfrase,tigrfam_Modification_methylase_HemK	-	no_errors	HEMK1	HGNC	ENSG00000114735				102	0	0	36	25	40.9836
MAPKAPK3	0	genome.wustl.edu	37	3	50655008	50655008	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50655008	50655008	A	C	SNP	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	missense	c.12	p.E4D	0.007	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				72	0	0	32	17	34.6939
MAPKAPK3	0	genome.wustl.edu	37	3	50683628	50683628	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	50683628	50683628	G	T	SNP	MAPKAPK3	ENST00000357955	human	ensembl	74_37	+1	known	missense	c.762	p.M254I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPKAPK3	HGNC	ENSG00000114738				330	0	0	143	81	36.1607
DOCK3	0	genome.wustl.edu	37	3	51417640	51417640	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51417640	51417640	T	C	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	splice_site	c.5583+2	e52+2	1.000	-	-	-	no_errors	DOCK3	HGNC	ENSG00000088538				45	0	0	17	8	32
RBM15B	0	genome.wustl.edu	37	3	51430882	51430882	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51430882	51430882	C	T	SNP	RBM15B	ENST00000323686	human	ensembl	74_37	+1	known	silent	c.2052	p.S684	0.959	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837				128	0	0	55	32	36.7816
VPRBP	0	genome.wustl.edu	37	3	51497201	51497201	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51497201	51497201	T	G	SNP	VPRBP	ENST00000335891	human	ensembl	74_37	-1	known	missense	c.304	p.N102H	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	VPRBP	HGNC	ENSG00000145041				38	0	0	20	11	35.4839
GRM2	0	genome.wustl.edu	37	3	51743099	51743099	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51743099	51743099	C	T	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	silent	c.100	p.L34	1.000	superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				66	0	0	32	22	40.7407
GRM2	0	genome.wustl.edu	37	3	51743227	51743227	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51743227	51743227	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	silent	c.228	p.P76	0.226	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				251	0	0	104	70	40.2299
IQCF2	0	genome.wustl.edu	37	3	51897136	51897136	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	51897136	51897136	C	T	SNP	IQCF2	ENST00000333127	human	ensembl	74_37	+1	known	missense	c.245	p.S82L	0.000	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF2	HGNC	ENSG00000184345				113	0	0	62	32	34.0426
RPL29	0	genome.wustl.edu	37	3	52027960	52027960	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52027960	52027960	T	G	SNP	RPL29	ENST00000294189	human	ensembl	74_37	-1	known	silent	c.285	p.R95	0.084	NULL	pfam_Ribosomal_L29e	-	no_errors	RPL29	HGNC	ENSG00000162244				203	0	0	82	40	32.7869
DNAH1	0	genome.wustl.edu	37	3	52381902	52381902	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52381902	52381902	G	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.2018	p.S673I	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				21	0	0	7	8	53.3333
EDEM1	0	genome.wustl.edu	37	3	5241340	5241340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	5241340	5241340	G	A	SNP	EDEM1	ENST00000256497	human	ensembl	74_37	+1	known	missense	c.646	p.D216N	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM1	HGNC	ENSG00000134109				61	0	0	16	16	50
DNAH1	0	genome.wustl.edu	37	3	52423500	52423500	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52423500	52423500	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	silent	c.9519	p.Y3173	0.017	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				22	0	0	9	8	47.0588
DNAH1	0	genome.wustl.edu	37	3	52433758	52433758	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52433758	52433758	T	G	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.12639	p.F4213L	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				180	0	0	79	56	41.4815
BAP1	0	genome.wustl.edu	37	3	52441282	52441282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52441282	52441282	C	T	SNP	BAP1	ENST00000460680	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	1.000	pfam_Peptidase_C12	pfam_Peptidase_C12,prints_Peptidase_C12	-	no_errors	BAP1	HGNC	ENSG00000163930				105	0	0	48	25	34.2466
SEMA3G	0	genome.wustl.edu	37	3	52475391	52475391	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52475391	52475391	C	A	SNP	SEMA3G	ENST00000231721	human	ensembl	74_37	-1	known	missense	c.702	p.E234D	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3G	HGNC	ENSG00000010319				95	0	0	41	26	38.806
NISCH	0	genome.wustl.edu	37	3	52505858	52505858	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52505858	52505858	C	A	SNP	NISCH	ENST00000345716	human	ensembl	74_37	+1	known	silent	c.438	p.V146	0.995	NULL	pfam_Phox,pfam_Leu-rich_rpt,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	NISCH	HGNC	ENSG00000010322				94	0	0	36	20	35.7143
STAB1	0	genome.wustl.edu	37	3	52543302	52543302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52543302	52543302	C	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.2312	p.S771L	0.364	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				70	0	0	35	10	22.2222
NT5DC2	0	genome.wustl.edu	37	3	52558592	52558592	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52558592	52558592	T	C	SNP	NT5DC2	ENST00000422318	human	ensembl	74_37	-1	known	missense	c.1568	p.Y523C	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5DC2	HGNC	ENSG00000168268				143	0	0	57	28	32.9412
ITIH1	0	genome.wustl.edu	37	3	52824806	52824806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52824806	52824806	C	T	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	missense	c.2363	p.S788F	0.990	pfam_ITI_HC_C,superfamily_PsdUridine_synth_cat_dom	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				262	0	0	100	60	37.5
ITIH3	0	genome.wustl.edu	37	3	52831835	52831835	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52831835	52831835	C	T	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	silent	c.552	p.I184	0.002	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				19	0	0	9	4	30.7692
ITIH3	0	genome.wustl.edu	37	3	52836763	52836763	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52836763	52836763	C	T	SNP	ITIH3	ENST00000449956	human	ensembl	74_37	+1	known	silent	c.1650	p.F550	0.982	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH3	HGNC	ENSG00000162267				97	0	0	30	21	41.1765
ITIH4	0	genome.wustl.edu	37	3	52860836	52860836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52860836	52860836	G	A	SNP	ITIH4	ENST00000266041	human	ensembl	74_37	-1	known	missense	c.490	p.R164W	0.156	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH4	HGNC	ENSG00000055955				90	0	0	39	25	39.0625
SFMBT1	0	genome.wustl.edu	37	3	52941623	52941623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	52941623	52941623	T	C	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	missense	c.2033	p.K678R	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935				90	0	0	53	30	36.1446
PRKCD	0	genome.wustl.edu	37	3	53212512	53212512	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	53212512	53212512	A	C	SNP	PRKCD	ENST00000330452	human	ensembl	74_37	+1	known	missense	c.74	p.Q25P	0.998	superfamily_C2_dom,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	PRKCD	HGNC	ENSG00000163932				88	0	0	36	15	29.4118
CACNA1D	0	genome.wustl.edu	37	3	53752369	53752369	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	53752369	53752369	A	C	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.1432	p.N478H	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				131	0	0	63	25	28.4091
CACNA1D	0	genome.wustl.edu	37	3	53845206	53845206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	53845206	53845206	G	A	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.6319	p.E2107K	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				143	0	0	66	26	28.2609
ACTR8	0	genome.wustl.edu	37	3	53914039	53914039	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	53914039	53914039	A	C	SNP	ACTR8	ENST00000335754	human	ensembl	74_37	-1	known	missense	c.221	p.V74G	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related	-	no_errors	ACTR8	HGNC	ENSG00000113812				196	0	0	129	60	31.746
CACNA2D3	0	genome.wustl.edu	37	3	54157603	54157603	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	54157603	54157603	T	C	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.186	p.G62	0.982	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				171	0	0	56	39	41.0526
LRTM1	0	genome.wustl.edu	37	3	54952817	54952817	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	54952817	54952817	G	A	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.707	p.A236V	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				45	0	0	32	15	31.9149
CACNA2D3	0	genome.wustl.edu	37	3	55018657	55018657	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	55018657	55018657	A	G	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	missense	c.2579	p.D860G	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				8	0	0	1	2	66.6667
ERC2	0	genome.wustl.edu	37	3	56114904	56114904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	56114904	56114904	G	A	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.1582	p.R528C	1.000	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672				55	0	0	22	15	40.5405
FAM208A	0	genome.wustl.edu	37	3	56657215	56657215	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	56657215	56657215	C	T	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	silent	c.4680	p.G1560	0.991	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				112	0	0	85	22	20.5607
FAM208A	0	genome.wustl.edu	37	3	56661678	56661678	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	56661678	56661678	T	G	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	missense	c.3779	p.E1260A	1.000	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946				95	0	0	58	25	30.1205
FAM208A	0	genome.wustl.edu	37	3	56674012	56674012	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	56674012	56674012	A	G	SNP	FAM208A	ENST00000355628	human	ensembl	74_37	-1	known	splice_site	c.2764+2	e16+2	1.000	-	-	-	no_errors	FAM208A	HGNC	ENSG00000163946				25	0	0	17	12	41.3793
ARHGEF3	0	genome.wustl.edu	37	3	56763357	56763357	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	56763357	56763357	G	A	SNP	ARHGEF3	ENST00000338458	human	ensembl	74_37	-1	known	missense	c.1618	p.R540C	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF3	HGNC	ENSG00000163947				155	0	0	65	37	36.2745
HESX1	0	genome.wustl.edu	37	3	57232259	57232259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57232259	57232259	G	A	SNP	HESX1	ENST00000295934	human	ensembl	74_37	-1	known	missense	c.524	p.A175V	0.939	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HESX1	HGNC	ENSG00000163666				46	0	0	40	15	27.2727
APPL1	0	genome.wustl.edu	37	3	57269638	57269638	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57269638	57269638	T	G	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	missense	c.99	p.I33M	1.000	NULL	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				154	0	0	82	47	36.4341
APPL1	0	genome.wustl.edu	37	3	57283540	57283540	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57283540	57283540	G	A	SNP	APPL1	ENST00000288266	human	ensembl	74_37	+1	known	missense	c.1016	p.R339Q	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PTB/PI_dom,smart_Pleckstrin_homology,smart_PTB/PI_dom,pfscan_Pleckstrin_homology,pfscan_PTB/PI_dom	-	no_errors	APPL1	HGNC	ENSG00000157500				125	0	0	74	38	33.9286
DENND6A	0	genome.wustl.edu	37	3	57616162	57616162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57616162	57616162	C	T	SNP	DENND6A	ENST00000311128	human	ensembl	74_37	-1	known	missense	c.1606	p.A536T	1.000	pfam_Afi1_N	pfam_Afi1_N,pfam_ABL9/DENND6_dom,pfam_DENN_dom	-	no_errors	DENND6A	HGNC	ENSG00000174839				53	0	0	27	15	35.7143
DENND6A	0	genome.wustl.edu	37	3	57649398	57649398	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57649398	57649398	G	A	SNP	DENND6A	ENST00000311128	human	ensembl	74_37	-1	known	nonsense	c.478	p.R160*	1.000	pfam_Afi1_N,pfam_ABL9/DENND6_dom	pfam_Afi1_N,pfam_ABL9/DENND6_dom,pfam_DENN_dom	-	no_errors	DENND6A	HGNC	ENSG00000174839				86	0	0	68	27	28.4211
DENND6A	0	genome.wustl.edu	37	3	57651870	57651870	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	57651870	57651870	C	A	SNP	DENND6A	ENST00000311128	human	ensembl	74_37	-1	known	missense	c.412	p.D138Y	1.000	pfam_Afi1_N,pfam_ABL9/DENND6_dom	pfam_Afi1_N,pfam_ABL9/DENND6_dom,pfam_DENN_dom	-	no_errors	DENND6A	HGNC	ENSG00000174839				91	0	0	105	30	22.2222
FLNB	0	genome.wustl.edu	37	3	58131773	58131773	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58131773	58131773	G	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	nonsense	c.5551	p.E1851*	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				106	0	0	40	22	35.4839
FLNB	0	genome.wustl.edu	37	3	58134405	58134405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58134405	58134405	G	A	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.5917	p.E1973K	0.998	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				94	0	0	50	23	31.5068
FLNB	0	genome.wustl.edu	37	3	58135711	58135711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58135711	58135711	G	A	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	missense	c.6226	p.A2076T	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				269	0	0	129	72	35.8209
RPP14	0	genome.wustl.edu	37	3	58296086	58296086	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58296086	58296086	A	C	SNP	RPP14	ENST00000295959	human	ensembl	74_37	+1	known	missense	c.30	p.R10S	0.891	NULL	pfam_RNase_P/MRP_subunit	-	no_errors	RPP14	HGNC	ENSG00000163684				103	0	0	66	33	33.3333
PDHB	0	genome.wustl.edu	37	3	58417336	58417336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58417336	58417336	G	A	SNP	PDHB	ENST00000302746	human	ensembl	74_37	-1	known	missense	c.287	p.A96V	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	PDHB	HGNC	ENSG00000168291				133	0	0	89	45	33.5821
C3orf67	0	genome.wustl.edu	37	3	58870367	58870367	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	58870367	58870367	T	C	SNP	C3orf67	ENST00000482387	human	ensembl	74_37	-1	known	missense	c.244	p.T82A	0.878	NULL	NULL	-	no_errors	C3orf67	HGNC	ENSG00000163689				171	0	0	100	56	35.8974
PTPRG	0	genome.wustl.edu	37	3	62118333	62118333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	62118333	62118333	G	A	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.673	p.V225I	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				208	1	0.478469	143	45	23.9362
CADPS	0	genome.wustl.edu	37	3	62522188	62522188	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	62522188	62522188	C	T	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.2035	p.A679T	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				156	0	0	116	55	32.1637
CADPS	0	genome.wustl.edu	37	3	62636621	62636621	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	62636621	62636621	C	A	SNP	CADPS	ENST00000383710	human	ensembl	74_37	-1	known	missense	c.1104	p.Q368H	1.000	NULL	pfam_Ca-dep_secretion_activator,superfamily_C2_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618				175	0	0	86	41	32.2835
PRICKLE2	0	genome.wustl.edu	37	3	64085446	64085446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	64085446	64085446	G	A	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.1816	p.R606C	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				246	0	0	117	40	25.4777
ADAMTS9	0	genome.wustl.edu	37	3	64608121	64608121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	64608121	64608121	C	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.2531	p.R844H	1.000	pfam_ADAM_spacer1	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				103	0	0	66	20	23.2558
ADAMTS9	0	genome.wustl.edu	37	3	64617528	64617528	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	64617528	64617528	G	T	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	missense	c.2249	p.S750Y	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				96	0	0	69	34	33.0097
MAGI1	0	genome.wustl.edu	37	3	65344740	65344740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	65344740	65344740	G	A	SNP	MAGI1	ENST00000330909	human	ensembl	74_37	-1	known	missense	c.3806	p.T1269M	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276				316	1	0.315457	213	81	27.551
SLC25A26	0	genome.wustl.edu	37	3	66293694	66293694	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	66293694	66293694	G	T	SNP	SLC25A26	ENST00000354883	human	ensembl	74_37	+1	known	missense	c.258	p.L86F	0.990	superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A26	HGNC	ENSG00000144741				149	0	0	79	55	41.0448
LRIG1	0	genome.wustl.edu	37	3	66448589	66448589	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	66448589	66448589	C	T	SNP	LRIG1	ENST00000273261	human	ensembl	74_37	-1	known	silent	c.1251	p.A417	0.135	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Cys-rich_flank_reg_C,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG1	HGNC	ENSG00000144749				132	0	0	63	38	37.6238
SUCLG2	0	genome.wustl.edu	37	3	67559310	67559310	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	67559310	67559310	C	T	SNP	SUCLG2	ENST00000307227	human	ensembl	74_37	-1	known	silent	c.678	p.T226	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLG2	HGNC	ENSG00000172340				51	0	0	46	12	20.6897
GRM7	0	genome.wustl.edu	37	3	6903450	6903450	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	6903450	6903450	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.375	p.A125	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				96	0	0	21	29	58
LMOD3	0	genome.wustl.edu	37	3	69168243	69168243	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	69168243	69168243	C	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	missense	c.1263	p.E421D	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				103	0	0	61	20	24.6914
LMOD3	0	genome.wustl.edu	37	3	69168701	69168701	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	69168701	69168701	C	A	SNP	LMOD3	ENST00000420581	human	ensembl	74_37	-1	known	nonsense	c.805	p.E269*	1.000	NULL	pfam_Tropomodulin	-	no_errors	LMOD3	HGNC	ENSG00000163380				199	0	0	121	68	35.9788
SHQ1	0	genome.wustl.edu	37	3	72881596	72881596	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	72881596	72881596	C	A	SNP	SHQ1	ENST00000325599	human	ensembl	74_37	-1	known	missense	c.523	p.D175Y	1.000	NULL	pfam_SHQ1,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	SHQ1	HGNC	ENSG00000144736				103	0	0	84	34	28.8136
CNTN3	0	genome.wustl.edu	37	3	74411169	74411169	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	74411169	74411169	C	A	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.1236	p.K412N	0.935	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				79	0	0	59	21	26.25
GRM7	0	genome.wustl.edu	37	3	7721736	7721736	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	7721736	7721736	C	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.2452	p.L818I	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				63	0	0	29	17	36.9565
ROBO2	0	genome.wustl.edu	37	3	77526693	77526693	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	77526693	77526693	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	nonsense	c.517	p.R173*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				114	0	0	79	29	26.8519
ROBO2	0	genome.wustl.edu	37	3	77684173	77684173	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	77684173	77684173	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	nonsense	c.3913	p.R1305*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				66	0	0	48	25	34.2466
ROBO1	0	genome.wustl.edu	37	3	78649283	78649283	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	78649283	78649283	C	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.4921	p.D1641Y	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				40	0	0	19	17	47.2222
GBE1	0	genome.wustl.edu	37	3	81698040	81698040	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	81698040	81698040	T	C	SNP	GBE1	ENST00000429644	human	ensembl	74_37	-1	known	missense	c.658	p.T220A	1.000	superfamily_Glycoside_hydrolase_SF	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480				21	0	0	9	4	30.7692
EPHA3	0	genome.wustl.edu	37	3	89259419	89259419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	89259419	89259419	C	T	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				212	1	0.469484	117	61	34.2697
RAD18	0	genome.wustl.edu	37	3	8983301	8983301	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	8983301	8983301	C	A	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	nonsense	c.454	p.E152*	0.990	NULL	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950				142	0	0	80	41	33.8843
RAD18	0	genome.wustl.edu	37	3	8990233	8990233	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	8990233	8990233	T	G	SNP	RAD18	ENST00000264926	human	ensembl	74_37	-1	known	missense	c.155	p.K52T	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_SAP_dom,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_Rad18_put,smart_SAP_dom,pfscan_Znf_RING,pfscan_SAP_dom	-	no_errors	RAD18	HGNC	ENSG00000070950				120	0	0	86	49	36.2963
STX19	0	genome.wustl.edu	37	3	93734063	93734063	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	93734063	93734063	G	T	SNP	STX19	ENST00000315099	human	ensembl	74_37	-1	known	silent	c.51	p.L17	0.000	NULL	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX19	HGNC	ENSG00000178750				93	0	0	69	34	33.0097
DHFRL1	0	genome.wustl.edu	37	3	93780181	93780181	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	93780181	93780181	A	G	SNP	DHFRL1	ENST00000314636	human	ensembl	74_37	-1	known	missense	c.175	p.F59L	1.000	pfam_DHFR_dom,superfamily_DHFR-like_dom,prints_DHFR	pfam_DHFR_dom,superfamily_DHFR-like_dom,prints_DHFR	-	no_errors	DHFRL1	HGNC	ENSG00000178700				269	0	0	134	56	29.4737
SETD5	0	genome.wustl.edu	37	3	9482139	9482139	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9482139	9482139	G	T	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	splice_site	c.568-1	e6-1	1.000	-	-	-	no_errors	SETD5	HGNC	ENSG00000168137				30	0	0	18	11	37.931
EPHA6	0	genome.wustl.edu	37	3	96706417	96706417	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	96706417	96706417	A	C	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.694	p.I232L	1.000	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				248	0	0	133	76	36.3636
EPHA6	0	genome.wustl.edu	37	3	97467501	97467501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	97467501	97467501	C	T	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.3349	p.R1117C	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224				35	0	0	24	11	31.4286
CRYBG3	0	genome.wustl.edu	37	3	97598582	97598582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	97598582	97598582	G	T	SNP	CRYBG3	ENST00000182096	human	ensembl	74_37	+1	known	missense	c.1034	p.R345I	1.000	NULL	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBG3	HGNC	ENSG00000080200				41	0	0	28	15	34.8837
CPNE9	0	genome.wustl.edu	37	3	9760228	9760228	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9760228	9760228	C	T	SNP	CPNE9	ENST00000383832	human	ensembl	74_37	+1	known	missense	c.1183	p.R395C	1.000	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE9	HGNC	ENSG00000144550				154	0	0	74	41	35.6522
OR5H15	0	genome.wustl.edu	37	3	97888229	97888229	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	97888229	97888229	A	C	SNP	OR5H15	ENST00000356526	human	ensembl	74_37	+1	known	missense	c.686	p.K229T	0.119	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H15	HGNC	ENSG00000233412				72	0	0	47	25	34.7222
ENSG00000251088	0	genome.wustl.edu	37	3	98030742	98030742	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98030742	98030742	A	G	SNP	ENSG00000251088	ENST00000508616	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-325B23.2	Clone_based_vega_gene	ENSG00000251088				100	0	0	66	36	35.2941
OR5K2	0	genome.wustl.edu	37	3	98217437	98217437	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98217437	98217437	C	A	SNP	OR5K2	ENST00000427338	human	ensembl	74_37	+1	known	missense	c.913	p.L305M	0.169	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5K2	HGNC	ENSG00000231861				28	0	0	21	15	41.6667
GPR15	0	genome.wustl.edu	37	3	98251081	98251081	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98251081	98251081	C	T	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	silent	c.204	p.I68	0.951	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				108	0	0	46	28	37.8378
GPR15	0	genome.wustl.edu	37	3	98251082	98251082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98251082	98251082	G	A	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	missense	c.205	p.D69N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				104	1	0.952381	46	27	36.9863
TADA3	0	genome.wustl.edu	37	3	9831496	9831496	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9831496	9831496	C	T	SNP	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	missense	c.359	p.R120Q	0.998	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148				206	0	0	89	37	29.3651
ST3GAL6	0	genome.wustl.edu	37	3	98487301	98487301	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98487301	98487301	T	C	SNP	ST3GAL6	ENST00000394162	human	ensembl	74_37	+1	known	missense	c.17	p.V6A	0.991	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225				166	0	0	84	59	41.2587
DCBLD2	0	genome.wustl.edu	37	3	98536721	98536721	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	98536721	98536721	T	C	SNP	DCBLD2	ENST00000326857	human	ensembl	74_37	-1	known	silent	c.1104	p.G368	0.988	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_CUB_dom,pfam_LCCL,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_LCCL,smart_CUB_dom,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL	-	no_errors	DCBLD2	HGNC	ENSG00000057019				51	0	0	23	14	37.8378
CIDEC	0	genome.wustl.edu	37	3	9911628	9911628	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9911628	9911628	A	C	SNP	CIDEC	ENST00000336832	human	ensembl	74_37	-1	known	silent	c.492	p.T164	0.060	NULL	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEC	HGNC	ENSG00000187288				134	0	0	68	34	33.3333
IL17RE	0	genome.wustl.edu	37	3	9950918	9950918	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9950918	9950918	G	A	SNP	IL17RE	ENST00000421412	human	ensembl	74_37	+1	known	silent	c.852	p.E284	0.998	NULL	pfam_SEFIR	-	no_errors	IL17RE	HGNC	ENSG00000163701				39	0	0	24	13	35.1351
FILIP1L	0	genome.wustl.edu	37	3	99568649	99568649	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	99568649	99568649	T	G	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.1871	p.K624T	1.000	NULL	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				147	0	0	88	63	41.7219
IL17RC	0	genome.wustl.edu	37	3	9959714	9959714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	9959714	9959714	G	A	SNP	IL17RC	ENST00000295981	human	ensembl	74_37	+1	known	missense	c.448	p.D150N	0.073	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702				37	0	0	12	10	45.4545
FILIP1L	0	genome.wustl.edu	37	3	99648715	99648715	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	99648715	99648715	C	A	SNP	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	missense	c.411	p.E137D	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				100	0	0	83	7	7.77778
CMSS1	0	genome.wustl.edu	37	3	99890693	99890693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	3	99890693	99890693	G	A	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.529	p.A177T	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220				70	0	0	32	25	43.8596
PCNAP1	0	genome.wustl.edu	37	4	100082205	100082205	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100082205	100082205	T	C	SNP	PCNAP1	ENST00000595299	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	PCNAP1	HGNC	ENSG00000249065				13	0	0	6	5	45.4545
ADH6	0	genome.wustl.edu	37	4	100126121	100126121	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100126121	100126121	T	G	SNP	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	missense	c.1064	p.K355T	0.372	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				97	0	0	61	21	25.6098
ADH6	0	genome.wustl.edu	37	4	100131414	100131414	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100131414	100131414	A	C	SNP	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	missense	c.392	p.F131C	0.990	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				88	0	0	50	18	26.4706
ADH1A	0	genome.wustl.edu	37	4	100201343	100201343	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100201343	100201343	G	A	SNP	ADH1A	ENST00000209668	human	ensembl	74_37	-1	known	silent	c.922	p.L308	0.866	pfam_ADH_C,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH1A	HGNC	ENSG00000187758				322	0	0	190	93	32.8622
MTTP	0	genome.wustl.edu	37	4	100521856	100521856	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100521856	100521856	C	A	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.1202	p.S401Y	1.000	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823				96	0	0	58	24	29.2683
LAMTOR3	0	genome.wustl.edu	37	4	100803066	100803066	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	100803066	100803066	A	C	SNP	LAMTOR3	ENST00000515100	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LAMTOR3	HGNC	ENSG00000109270				15	0	0	13	6	31.5789
EMCN	0	genome.wustl.edu	37	4	101342465	101342465	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	101342465	101342465	T	A	SNP	EMCN	ENST00000296420	human	ensembl	74_37	-1	known	missense	c.638	p.Y213F	1.000	pfam_Endomucin	pfam_Endomucin	-	no_errors	EMCN	HGNC	ENSG00000164035				109	0	0	60	34	36.1702
UBE2D3	0	genome.wustl.edu	37	4	103747704	103747704	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	103747704	103747704	T	C	SNP	UBE2D3	ENST00000513098	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBE2D3	HGNC	ENSG00000109332				175	0	0	96	58	37.6623
SLC9B2	0	genome.wustl.edu	37	4	103966064	103966064	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	103966064	103966064	A	C	SNP	SLC9B2	ENST00000362026	human	ensembl	74_37	-1	known	missense	c.979	p.F327V	1.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B2	HGNC	ENSG00000164038				165	0	0	138	46	25
BDH2	0	genome.wustl.edu	37	4	104003289	104003289	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104003289	104003289	G	A	SNP	BDH2	ENST00000296424	human	ensembl	74_37	-1	known	silent	c.633	p.F211	1.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR,prints_ADH_insect	-	no_errors	BDH2	HGNC	ENSG00000164039				67	0	0	45	17	27.4194
CENPE	0	genome.wustl.edu	37	4	104080192	104080192	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104080192	104080192	G	A	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.2576	p.S859L	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				79	0	0	55	21	27.6316
CENPE	0	genome.wustl.edu	37	4	104081903	104081903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104081903	104081903	A	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.2165	p.I722S	0.153	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				69	0	0	81	40	33.0579
CENPE	0	genome.wustl.edu	37	4	104098057	104098057	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104098057	104098057	T	C	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	silent	c.1389	p.E463	0.996	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				26	0	0	13	14	51.8519
CENPE	0	genome.wustl.edu	37	4	104116366	104116366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104116366	104116366	G	A	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.382	p.R128C	0.516	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				63	0	0	48	19	28.3582
CENPE	0	genome.wustl.edu	37	4	104117407	104117407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	104117407	104117407	G	A	SNP	CENPE	ENST00000265148	human	ensembl	74_37	-1	known	missense	c.151	p.R51C	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_STAT_TF_coiled-coil,superfamily_Signal_recog_particl_SRP54_hlx,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	CENPE	HGNC	ENSG00000138778				38	0	0	35	15	30
TET2	0	genome.wustl.edu	37	4	106156276	106156276	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	106156276	106156276	T	G	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1177	p.S393A	0.343	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				194	0	0	102	41	28.6713
TET2	0	genome.wustl.edu	37	4	106156313	106156313	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	106156313	106156313	T	G	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1214	p.L405R	0.055	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				180	0	0	109	41	27.3333
TET2	0	genome.wustl.edu	37	4	106156805	106156805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	106156805	106156805	C	T	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.1706	p.A569V	0.444	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769				150	1	0.662252	89	22	19.8198
PPA2	0	genome.wustl.edu	37	4	106377901	106377901	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	106377901	106377901	C	A	SNP	PPA2	ENST00000357415	human	ensembl	74_37	-1	known	missense	c.159	p.K53N	0.996	superfamily_Pyrophosphatase	pfam_Pyrophosphatase,superfamily_Pyrophosphatase	-	no_errors	PPA2	HGNC	ENSG00000138777				101	0	0	78	27	25.7143
SGMS2	0	genome.wustl.edu	37	4	108824539	108824539	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	108824539	108824539	G	T	SNP	SGMS2	ENST00000359079	human	ensembl	74_37	+1	known	nonsense	c.724	p.E242*	1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase	-	no_errors	SGMS2	HGNC	ENSG00000164023				89	0	0	49	27	35.5263
CYP2U1	0	genome.wustl.edu	37	4	108866502	108866502	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	108866502	108866502	A	C	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	missense	c.867	p.Q289H	0.467	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				106	0	0	52	39	42.8571
CYP2U1	0	genome.wustl.edu	37	4	108866523	108866523	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	108866523	108866523	T	C	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	silent	c.888	p.S296	0.180	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				107	0	0	41	31	43.0556
CYP2U1	0	genome.wustl.edu	37	4	108870649	108870649	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	108870649	108870649	G	T	SNP	CYP2U1	ENST00000332884	human	ensembl	74_37	+1	known	nonsense	c.1432	p.E478*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-I_CYP2D-like	-	no_errors	CYP2U1	HGNC	ENSG00000155016				65	0	0	33	13	28.2609
LEF1-AS1	0	genome.wustl.edu	37	4	109088941	109088941	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	109088941	109088941	C	A	SNP	LEF1-AS1	ENST00000436413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.159	-	-	-	no_errors	LEF1-AS1	HGNC	ENSG00000232021				143	0	0	60	28	31.8182
ETNPPL	0	genome.wustl.edu	37	4	109663646	109663646	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	109663646	109663646	C	A	SNP	ETNPPL	ENST00000296486	human	ensembl	74_37	-1	known	missense	c.1494	p.K498N	1.000	NULL	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ETNPPL	HGNC	ENSG00000164089				170	0	0	96	41	29.927
COL25A1	0	genome.wustl.edu	37	4	109745296	109745296	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	109745296	109745296	T	C	SNP	COL25A1	ENST00000399126	human	ensembl	74_37	-1	known	missense	c.1879	p.I627V	0.000	NULL	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517				88	0	0	47	39	45.3488
COL25A1	0	genome.wustl.edu	37	4	109895713	109895713	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	109895713	109895713	G	A	SNP	COL25A1	ENST00000399132	human	ensembl	74_37	-1	known	silent	c.441	p.G147	0.998	pfam_Collagen	pfam_Collagen	-	no_errors	COL25A1	HGNC	ENSG00000188517				116	0	0	70	29	29.2929
SEC24B	0	genome.wustl.edu	37	4	110434991	110434991	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110434991	110434991	C	A	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.1992	p.F664L	1.000	superfamily_Znf_Sec23_Sec24	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				141	0	0	85	56	39.7163
SEC24B	0	genome.wustl.edu	37	4	110446055	110446055	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110446055	110446055	T	G	SNP	SEC24B	ENST00000265175	human	ensembl	74_37	+1	known	missense	c.2590	p.L864V	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24B	HGNC	ENSG00000138802				88	0	0	52	22	29.7297
CCDC109B	0	genome.wustl.edu	37	4	110605624	110605624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110605624	110605624	C	T	SNP	CCDC109B	ENST00000394650	human	ensembl	74_37	+1	known	missense	c.638	p.S213L	0.030	pfam_Coiled-coil-dom_prot_109_C	pfam_Coiled-coil-dom_prot_109_C	-	no_errors	CCDC109B	HGNC	ENSG00000005059				83	0	0	45	23	33.8235
CFI	0	genome.wustl.edu	37	4	110687839	110687839	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110687839	110687839	A	G	SNP	CFI	ENST00000394634	human	ensembl	74_37	-1	known	missense	c.199	p.C67R	1.000	smart_FacI_MAC	pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_FacI_MAC,smart_Srcr_rcpt-rel,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	CFI	HGNC	ENSG00000205403				90	0	0	49	21	30
EGF	0	genome.wustl.edu	37	4	110862234	110862234	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110862234	110862234	G	T	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.260	p.R87I	0.669	pirsf_Pro-epidermal_GF,smart_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				91	0	0	68	27	28.4211
EGF	0	genome.wustl.edu	37	4	110901199	110901199	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	110901199	110901199	A	C	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	silent	c.2125	p.R709	1.000	pirsf_Pro-epidermal_GF,smart_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798				127	0	0	67	30	30.9278
PITX2	0	genome.wustl.edu	37	4	111542364	111542364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	111542364	111542364	C	T	SNP	PITX2	ENST00000306732	human	ensembl	74_37	-1	known	missense	c.367	p.E123K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX2	HGNC	ENSG00000164093				56	0	0	28	24	46.1538
C4orf21	0	genome.wustl.edu	37	4	113508552	113508552	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	113508552	113508552	A	G	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.3661	p.S1221P	0.012	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				266	0	0	172	80	31.746
C4orf21	0	genome.wustl.edu	37	4	113508887	113508887	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	113508887	113508887	A	C	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.3326	p.L1109R	0.000	NULL	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				17	0	0	8	3	27.2727
C4orf21	0	genome.wustl.edu	37	4	113545027	113545027	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	113545027	113545027	A	C	SNP	C4orf21	ENST00000505019	human	ensembl	74_37	-1	known	missense	c.108	p.I36M	1.000	pfam_DUF2439	pfam_DUF2439,pfam_Znf_GRF,superfamily_P-loop_NTPase	-	no_errors	C4orf21	HGNC	ENSG00000138658				29	0	0	24	7	22.5806
LARP7	0	genome.wustl.edu	37	4	113578496	113578496	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	113578496	113578496	T	G	SNP	LARP7	ENST00000503898	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LARP7	HGNC	ENSG00000174720				14	0	0	12	5	29.4118
HS3ST1	0	genome.wustl.edu	37	4	11400898	11400898	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	11400898	11400898	C	T	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	silent	c.732	p.S244	0.156	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				82	0	0	41	23	35.9375
ANK2	0	genome.wustl.edu	37	4	114276905	114276905	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	114276905	114276905	C	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.7131	p.D2377	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				85	0	0	47	21	30.8824
ANK2	0	genome.wustl.edu	37	4	114278303	114278303	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	114278303	114278303	C	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	silent	c.8529	p.S2843	0.000	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				195	0	0	120	61	33.7017
ANK2	0	genome.wustl.edu	37	4	114284541	114284541	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	114284541	114284541	C	T	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	nonsense	c.10804	p.R3602*	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				63	0	0	40	18	31.0345
NDST4	0	genome.wustl.edu	37	4	115898385	115898385	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	115898385	115898385	A	C	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.1024	p.F342V	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				115	0	0	49	35	41.6667
NDST4	0	genome.wustl.edu	37	4	115998158	115998158	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	115998158	115998158	C	T	SNP	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	missense	c.35	p.R12Q	1.000	NULL	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				25	0	0	26	3	10.3448
SPON2	0	genome.wustl.edu	37	4	1164274	1164274	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1164274	1164274	G	A	SNP	SPON2	ENST00000290902	human	ensembl	74_37	-1	known	missense	c.727	p.R243W	0.932	NULL	pfam_Spondin_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Spondin_N,pfscan_Thrombospondin_1_rpt	-	no_errors	SPON2	HGNC	ENSG00000159674				164	0	0	76	42	35.5932
NDST3	0	genome.wustl.edu	37	4	118975799	118975799	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	118975799	118975799	C	A	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.734	p.S245Y	0.916	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				158	0	0	86	66	43.4211
NDST3	0	genome.wustl.edu	37	4	118975970	118975970	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	118975970	118975970	A	G	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.905	p.D302G	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				228	0	0	128	80	38.4615
PRSS12	0	genome.wustl.edu	37	4	119229642	119229642	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	119229642	119229642	T	C	SNP	PRSS12	ENST00000296498	human	ensembl	74_37	-1	known	missense	c.1580	p.D527G	0.987	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_Peptidase_S1,pfam_Kringle,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_Kringle-like,smart_Kringle,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_Kringle,pfscan_SRCR,pfscan_Peptidase_S1,prints_SRCR,prints_Peptidase_S1A	-	no_errors	PRSS12	HGNC	ENSG00000164099				193	0	0	105	54	33.9623
SYNPO2	0	genome.wustl.edu	37	4	119952619	119952619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	119952619	119952619	G	A	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.2689	p.A897T	0.977	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				148	0	0	71	43	37.7193
SYNPO2	0	genome.wustl.edu	37	4	119952769	119952769	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	119952769	119952769	C	T	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.2839	p.P947S	0.212	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				113	0	0	53	38	41.7582
SYNPO2	0	genome.wustl.edu	37	4	119953078	119953078	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	119953078	119953078	C	T	SNP	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	missense	c.3148	p.P1050S	0.998	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				90	0	0	47	25	34.7222
USP53	0	genome.wustl.edu	37	4	120192574	120192574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	120192574	120192574	G	A	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	missense	c.1559	p.R520Q	0.078	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				100	0	0	81	41	33.6066
USP53	0	genome.wustl.edu	37	4	120213820	120213820	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	120213820	120213820	G	A	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	silent	c.2676	p.E892	0.087	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				91	0	0	50	28	35.8974
PDE5A	0	genome.wustl.edu	37	4	120419777	120419777	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	120419777	120419777	G	A	SNP	PDE5A	ENST00000354960	human	ensembl	74_37	-1	known	silent	c.2607	p.S869	0.922	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE5A	HGNC	ENSG00000138735				136	0	0	55	33	37.5
NDNF	0	genome.wustl.edu	37	4	121957679	121957679	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	121957679	121957679	T	G	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.1447	p.K483Q	1.000	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				135	0	0	85	46	35.1145
NDNF	0	genome.wustl.edu	37	4	121958329	121958329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	121958329	121958329	C	T	SNP	NDNF	ENST00000379692	human	ensembl	74_37	-1	known	missense	c.797	p.R266H	0.971	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376				99	0	0	51	31	37.8049
QRFPR	0	genome.wustl.edu	37	4	122250697	122250697	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	122250697	122250697	G	A	SNP	QRFPR	ENST00000394427	human	ensembl	74_37	-1	known	silent	c.1068	p.F356	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	QRFPR	HGNC	ENSG00000186867				135	0	0	96	45	31.9149
EXOSC9	0	genome.wustl.edu	37	4	122732818	122732818	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	122732818	122732818	A	C	SNP	EXOSC9	ENST00000379663	human	ensembl	74_37	+1	known	missense	c.819	p.Q273H	1.000	NULL	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC9	HGNC	ENSG00000123737				34	0	0	24	21	46.6667
KIAA1109	0	genome.wustl.edu	37	4	123179988	123179988	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123179988	123179988	T	C	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.6752	p.L2251S	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				60	0	0	39	13	25
KIAA1109	0	genome.wustl.edu	37	4	123265632	123265632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123265632	123265632	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.12649	p.R4217C	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				156	0	0	91	31	25.4098
KIAA1109	0	genome.wustl.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123274229	123274229	C	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.14020	p.R4674C	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				99	0	0	60	28	31.8182
ADAD1	0	genome.wustl.edu	37	4	123336586	123336586	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123336586	123336586	T	C	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	silent	c.1302	p.R434	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				157	0	0	99	42	29.7872
BBS12	0	genome.wustl.edu	37	4	123663068	123663068	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123663068	123663068	C	T	SNP	BBS12	ENST00000314218	human	ensembl	74_37	+1	known	silent	c.21	p.V7	0.001	NULL	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	-	no_errors	BBS12	HGNC	ENSG00000181004				90	0	0	41	24	36.9231
NUDT6	0	genome.wustl.edu	37	4	123818804	123818804	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123818804	123818804	G	A	SNP	NUDT6	ENST00000304430	human	ensembl	74_37	-1	known	silent	c.528	p.G176	0.280	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917				61	0	0	45	27	37.5
NUDT6	0	genome.wustl.edu	37	4	123838690	123838690	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	123838690	123838690	T	G	SNP	NUDT6	ENST00000304430	human	ensembl	74_37	-1	known	missense	c.408	p.L136F	1.000	superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917				157	0	0	93	31	25
FAT4	0	genome.wustl.edu	37	4	126239987	126239987	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126239987	126239987	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.2421	p.A807	0.174	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				200	0	0	97	59	37.8205
FAT4	0	genome.wustl.edu	37	4	126328095	126328095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126328095	126328095	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5368	p.D1790N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				146	0	0	95	38	28.5714
FAT4	0	genome.wustl.edu	37	4	126328144	126328144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126328144	126328144	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.5417	p.R1806H	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				189	0	0	126	57	31.1475
FAT4	0	genome.wustl.edu	37	4	126371220	126371220	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126371220	126371220	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.9049	p.S3017P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				91	0	0	58	36	38.2979
FAT4	0	genome.wustl.edu	37	4	126372053	126372053	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126372053	126372053	T	C	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.9882	p.Y3294	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				118	0	0	56	22	28.2051
FAT4	0	genome.wustl.edu	37	4	126372616	126372616	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126372616	126372616	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.10445	p.A3482D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				212	0	0	115	47	29.0123
FAT4	0	genome.wustl.edu	37	4	126400929	126400929	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126400929	126400929	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.12507	p.S4169	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				46	0	0	34	11	24.4444
FAT4	0	genome.wustl.edu	37	4	126412663	126412663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	126412663	126412663	C	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.14686	p.R4896C	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				92	0	0	52	25	32.4675
HSPA4L	0	genome.wustl.edu	37	4	128739553	128739553	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	128739553	128739553	A	G	SNP	HSPA4L	ENST00000439123	human	ensembl	74_37	+1	known	missense	c.1745	p.D582G	0.992	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA4L	HGNC	ENSG00000164070				81	0	0	56	29	34.1176
PLK4	0	genome.wustl.edu	37	4	128804620	128804620	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	128804620	128804620	T	G	SNP	PLK4	ENST00000270861	human	ensembl	74_37	+1	known	missense	c.249	p.N83K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK4	HGNC	ENSG00000142731				77	0	0	46	16	25.8065
C4orf29	0	genome.wustl.edu	37	4	128941239	128941239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	128941239	128941239	C	T	SNP	C4orf29	ENST00000398965	human	ensembl	74_37	+1	known	missense	c.614	p.A205V	1.000	pfam_DUF2048	pfam_DUF2048	-	no_errors	C4orf29	HGNC	ENSG00000164074				36	0	0	24	7	22.5806
MAEA	0	genome.wustl.edu	37	4	1333066	1333066	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1333066	1333066	G	A	SNP	MAEA	ENST00000512289	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAEA	HGNC	ENSG00000090316				20	0	0	8	6	42.8571
HSP90AB2P	0	genome.wustl.edu	37	4	13339641	13339641	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	13339641	13339641	C	T	SNP	HSP90AB2P	ENST00000602906	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.926	-	-	-	no_errors	HSP90AB2P	HGNC	ENSG00000205940				22	0	0	15	9	37.5
RAB28	0	genome.wustl.edu	37	4	13383192	13383192	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	13383192	13383192	T	G	SNP	RAB28	ENST00000330852	human	ensembl	74_37	-1	known	missense	c.418	p.K140Q	1.000	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB28	HGNC	ENSG00000157869				58	0	0	36	13	26.5306
PCDH10	0	genome.wustl.edu	37	4	134071595	134071595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	134071595	134071595	G	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.300	p.E100D	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				159	0	0	79	33	29.4643
PCDH10	0	genome.wustl.edu	37	4	134072121	134072121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	134072121	134072121	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.826	p.D276N	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				153	1	0.649351	76	39	33.913
PCDH10	0	genome.wustl.edu	37	4	134075511	134075511	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	134075511	134075511	G	A	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	missense	c.2681	p.R894Q	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				37	0	0	18	13	41.9355
BOD1L1	0	genome.wustl.edu	37	4	13579056	13579056	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	13579056	13579056	T	G	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.8855	p.K2952T	0.999	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				32	0	0	20	10	33.3333
BOD1L1	0	genome.wustl.edu	37	4	13603585	13603585	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	13603585	13603585	T	C	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.4939	p.T1647A	0.004	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				331	0	0	169	86	33.7255
BOD1L1	0	genome.wustl.edu	37	4	13603599	13603599	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	13603599	13603599	A	G	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.4925	p.V1642A	0.001	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219				300	0	0	151	76	33.4802
PCDH18	0	genome.wustl.edu	37	4	138450792	138450792	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	138450792	138450792	G	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.2451	p.F817L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				65	0	0	32	17	34.6939
PCDH18	0	genome.wustl.edu	37	4	138451451	138451451	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	138451451	138451451	A	C	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1792	p.F598V	0.998	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				401	0	0	187	115	38.0795
PCDH18	0	genome.wustl.edu	37	4	138451957	138451957	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	138451957	138451957	G	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1286	p.S429Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				161	0	0	103	41	28.4722
PCDH18	0	genome.wustl.edu	37	4	138452515	138452515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	138452515	138452515	C	T	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.728	p.S243N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				129	1	0.769231	75	39	34.2105
CRIPAK	0	genome.wustl.edu	37	4	1389618	1389618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1389618	1389618	C	A	SNP	CRIPAK	ENST00000324803	human	ensembl	74_37	+1	known	missense	c.1319	p.S440Y	0.345	NULL	smart_Post-SET_dom	-	no_errors	CRIPAK	HGNC	ENSG00000179979				110	0	0	56	29	34.1176
NAA15	0	genome.wustl.edu	37	4	140306065	140306065	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	140306065	140306065	G	A	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	silent	c.2235	p.T745	0.076	pirsf_NatA_aux_su	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				46	0	0	36	18	33.3333
NAA15	0	genome.wustl.edu	37	4	140306076	140306076	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	140306076	140306076	A	C	SNP	NAA15	ENST00000296543	human	ensembl	74_37	+1	known	missense	c.2246	p.N749T	1.000	pirsf_NatA_aux_su	pfam_NatA_aux_su,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA15	HGNC	ENSG00000164134				49	0	0	48	4	7.69231
CLGN	0	genome.wustl.edu	37	4	141315154	141315154	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	141315154	141315154	G	A	SNP	CLGN	ENST00000325617	human	ensembl	74_37	-1	known	silent	c.1191	p.F397	1.000	pfam_Calret/calnex,superfamily_Calreticulin/calnexin_P_dom	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CLGN	HGNC	ENSG00000153132				47	0	0	41	16	28.0702
UCP1	0	genome.wustl.edu	37	4	141489041	141489041	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	141489041	141489041	T	G	SNP	UCP1	ENST00000262999	human	ensembl	74_37	-1	known	missense	c.217	p.K73Q	0.185	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	UCP1	HGNC	ENSG00000109424				162	0	0	81	34	29.5652
RNF150	0	genome.wustl.edu	37	4	142053630	142053630	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	142053630	142053630	C	T	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	silent	c.333	p.P111	0.892	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153				16	0	0	7	5	41.6667
GAB1	0	genome.wustl.edu	37	4	144390300	144390300	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	144390300	144390300	A	G	SNP	GAB1	ENST00000262995	human	ensembl	74_37	+1	known	silent	c.2133	p.R711	0.919	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB1	HGNC	ENSG00000109458				77	0	0	46	14	23.3333
SMARCA5	0	genome.wustl.edu	37	4	144471198	144471198	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	144471198	144471198	A	C	SNP	SMARCA5	ENST00000283131	human	ensembl	74_37	+1	known	missense	c.3034	p.N1012H	1.000	pfam_SLIDE,superfamily_Homeodomain-like	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA5	HGNC	ENSG00000153147				16	0	0	23	9	28.125
HHIP	0	genome.wustl.edu	37	4	145573877	145573877	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	145573877	145573877	G	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.400	p.D134Y	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				158	0	0	113	63	35.7955
HHIP	0	genome.wustl.edu	37	4	145581007	145581007	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	145581007	145581007	T	G	SNP	HHIP	ENST00000434550	human	ensembl	74_37	+1	known	missense	c.848	p.F283C	0.863	NULL	pfam_Folate_rcpt-like	-	no_errors	HHIP	HGNC	ENSG00000164161				71	0	0	37	22	37.2881
HHIP	0	genome.wustl.edu	37	4	145629371	145629371	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	145629371	145629371	C	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	silent	c.1209	p.N403	0.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				104	0	0	55	22	28.5714
OTUD4	0	genome.wustl.edu	37	4	146059262	146059262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	146059262	146059262	C	T	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.2665	p.E889K	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				65	0	0	40	16	28.5714
OTUD4	0	genome.wustl.edu	37	4	146071967	146071967	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	146071967	146071967	T	G	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.1059	p.Q353H	0.910	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				50	0	0	27	21	43.75
OTUD4	0	genome.wustl.edu	37	4	146071986	146071986	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	146071986	146071986	T	G	SNP	OTUD4	ENST00000447906	human	ensembl	74_37	-1	known	missense	c.1040	p.K347T	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	OTUD4	HGNC	ENSG00000164164				60	0	0	28	19	40.4255
ZNF827	0	genome.wustl.edu	37	4	146807209	146807209	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	146807209	146807209	C	T	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	silent	c.1368	p.Q456	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				72	0	0	36	14	28
ZNF827	0	genome.wustl.edu	37	4	146859541	146859541	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	146859541	146859541	C	T	SNP	ZNF827	ENST00000508784	human	ensembl	74_37	-1	known	missense	c.19	p.E7K	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF827	HGNC	ENSG00000151612				181	0	0	85	49	36.5672
TMEM184C	0	genome.wustl.edu	37	4	148539147	148539147	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	148539147	148539147	A	G	SNP	TMEM184C	ENST00000296582	human	ensembl	74_37	+1	known	missense	c.40	p.I14V	1.000	NULL	pfam_Ost-alpha	-	no_errors	TMEM184C	HGNC	ENSG00000164168				254	0	0	119	59	33.1461
TMEM184C	0	genome.wustl.edu	37	4	148554919	148554919	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	148554919	148554919	T	G	SNP	TMEM184C	ENST00000296582	human	ensembl	74_37	+1	known	missense	c.883	p.F295V	1.000	pfam_Ost-alpha	pfam_Ost-alpha	-	no_errors	TMEM184C	HGNC	ENSG00000164168				101	0	0	85	39	31.4516
PRMT10	0	genome.wustl.edu	37	4	148582140	148582140	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	148582140	148582140	A	G	SNP	PRMT10	ENST00000322396	human	ensembl	74_37	-1	known	missense	c.1003	p.F335L	1.000	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PRMT10	HGNC	ENSG00000164169				104	0	0	62	41	39.8058
NR3C2	0	genome.wustl.edu	37	4	149041348	149041348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	149041348	149041348	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	missense	c.2614	p.E872K	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				122	0	0	54	28	34.1463
LRBA	0	genome.wustl.edu	37	4	151356761	151356761	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	151356761	151356761	G	A	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.7054	p.R2352C	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				115	0	0	91	36	28.3465
LRBA	0	genome.wustl.edu	37	4	151773634	151773634	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	151773634	151773634	A	G	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	silent	c.3228	p.S1076	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				103	0	0	57	22	27.8481
LRBA	0	genome.wustl.edu	37	4	151827471	151827471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	151827471	151827471	A	G	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.1580	p.V527A	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				129	0	0	127	37	22.561
LRBA	0	genome.wustl.edu	37	4	151849672	151849672	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	151849672	151849672	C	T	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.545	p.R182Q	1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589				41	0	0	26	9	25.7143
SH3D19	0	genome.wustl.edu	37	4	152086764	152086764	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	152086764	152086764	C	T	SNP	SH3D19	ENST00000304527	human	ensembl	74_37	-1	known	missense	c.779	p.R260Q	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686				97	0	0	61	34	35.7895
PET112	0	genome.wustl.edu	37	4	152679967	152679967	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	152679967	152679967	G	T	SNP	PET112	ENST00000263985	human	ensembl	74_37	-1	known	missense	c.284	p.S95Y	1.000	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,tigrfam_Apn/Gln-ADT_bsu	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691				151	0	0	113	43	27.5641
FBXW7	0	genome.wustl.edu	37	4	153332915	153332915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	153332915	153332915	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.41	p.R14Q	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				60	0	0	38	15	28.3019
TIGD4	0	genome.wustl.edu	37	4	153690733	153690733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	153690733	153690733	G	A	SNP	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	missense	c.1424	p.A475V	0.989	pfam_Centromere_CenpB_dimerisation	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				61	0	0	35	24	40.678
TIGD4	0	genome.wustl.edu	37	4	153691842	153691842	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	153691842	153691842	A	C	SNP	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	silent	c.315	p.V105	0.998	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				163	0	0	122	55	31.0734
FHDC1	0	genome.wustl.edu	37	4	153896828	153896828	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	153896828	153896828	C	T	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.2385	p.G795	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460				184	0	0	90	50	35.7143
CC2D2A	0	genome.wustl.edu	37	4	15504497	15504497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	15504497	15504497	G	A	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.389	p.R130H	1.000	NULL	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				20	0	0	11	6	35.2941
DCHS2	0	genome.wustl.edu	37	4	155242229	155242229	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155242229	155242229	A	C	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.2957	p.F986C	0.923	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				95	0	0	46	35	43.2099
DCHS2	0	genome.wustl.edu	37	4	155298497	155298497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155298497	155298497	C	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.334	p.D112N	0.296	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				110	0	0	59	31	34.4444
ZNF718	0	genome.wustl.edu	37	4	155467	155467	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155467	155467	G	A	SNP	ZNF718	ENST00000400172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312				40	0	0	11	8	42.1053
FGA	0	genome.wustl.edu	37	4	155505592	155505592	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155505592	155505592	G	A	SNP	FGA	ENST00000302053	human	ensembl	74_37	-1	known	missense	c.2285	p.A762V	0.998	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FGA	HGNC	ENSG00000171560				220	0	0	109	55	33.5366
RBM46	0	genome.wustl.edu	37	4	155717946	155717946	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155717946	155717946	A	C	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	missense	c.42	p.K14N	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				36	0	0	39	13	25
RBM46	0	genome.wustl.edu	37	4	155720683	155720683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	155720683	155720683	G	A	SNP	RBM46	ENST00000281722	human	ensembl	74_37	+1	known	missense	c.1369	p.E457K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM46	HGNC	ENSG00000151962				28	0	0	17	6	26.087
CC2D2A	0	genome.wustl.edu	37	4	15589443	15589443	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	15589443	15589443	T	G	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.4070	p.F1357C	1.000	NULL	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				33	0	0	15	7	31.8182
FBXL5	0	genome.wustl.edu	37	4	15627020	15627020	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	15627020	15627020	T	G	SNP	FBXL5	ENST00000341285	human	ensembl	74_37	-1	known	missense	c.1705	p.M569L	0.150	NULL	pfam_F-box_dom,pfam_Leu-rich_rpt,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL5	HGNC	ENSG00000118564				60	0	0	27	15	35.7143
MAP9	0	genome.wustl.edu	37	4	156281545	156281545	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156281545	156281545	T	G	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.825	p.E275D	0.997	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				50	0	0	29	16	35.5556
MAP9	0	genome.wustl.edu	37	4	156294541	156294541	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156294541	156294541	A	C	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	missense	c.228	p.F76L	0.987	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114				33	0	0	24	12	33.3333
GUCY1A3	0	genome.wustl.edu	37	4	156632398	156632398	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156632398	156632398	T	G	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	missense	c.1081	p.S361A	0.995	pfam_Haem_no_assoc-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116				83	0	0	45	24	34.7826
GUCY1B3	0	genome.wustl.edu	37	4	156725805	156725805	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156725805	156725805	C	T	SNP	GUCY1B3	ENST00000264424	human	ensembl	74_37	+1	known	nonsense	c.1615	p.R539*	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_Haem_no_assoc-bd,pfam_A/G_cyclase,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1B3	HGNC	ENSG00000061918				91	0	0	58	24	29.2683
CTSO	0	genome.wustl.edu	37	4	156847209	156847209	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156847209	156847209	G	A	SNP	CTSO	ENST00000433477	human	ensembl	74_37	-1	known	silent	c.945	p.S315	0.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043				21	0	0	25	8	24.2424
CTSO	0	genome.wustl.edu	37	4	156860584	156860584	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	156860584	156860584	G	A	SNP	CTSO	ENST00000433477	human	ensembl	74_37	-1	known	missense	c.491	p.S164L	1.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSO	HGNC	ENSG00000256043				192	0	0	113	43	27.5641
GRIA2	0	genome.wustl.edu	37	4	158257880	158257880	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	158257880	158257880	G	T	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	nonsense	c.1825	p.G609*	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				201	0	0	105	48	31.3725
GRIA2	0	genome.wustl.edu	37	4	158262455	158262455	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	158262455	158262455	C	A	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	missense	c.1884	p.F628L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				186	0	0	114	64	35.9551
GRIA2	0	genome.wustl.edu	37	4	158262572	158262572	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	158262572	158262572	T	G	SNP	GRIA2	ENST00000264426	human	ensembl	74_37	+1	known	silent	c.2001	p.A667	0.998	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA2	HGNC	ENSG00000120251				185	1	0.537634	105	68	39.3064
CD38	0	genome.wustl.edu	37	4	15850203	15850203	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	15850203	15850203	C	A	SNP	CD38	ENST00000226279	human	ensembl	74_37	+1	known	nonsense	c.881	p.S294*	0.000	pfam_ADP-ribosyl_cyclase	pfam_ADP-ribosyl_cyclase	-	no_errors	CD38	HGNC	ENSG00000004468				52	0	0	39	14	26.4151
ENSG00000251429	0	genome.wustl.edu	37	4	159198967	159198967	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	159198967	159198967	G	A	SNP	ENSG00000251429	ENST00000512016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.114	-	-	-	no_errors	RP11-597D13.7	Clone_based_vega_gene	ENSG00000251429				24	0	0	12	5	29.4118
RXFP1	0	genome.wustl.edu	37	4	159494048	159494048	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	159494048	159494048	C	T	SNP	RXFP1	ENST00000484785	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RXFP1	HGNC	ENSG00000171509				51	0	0	32	15	31.9149
RXFP1	0	genome.wustl.edu	37	4	159567986	159567986	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	159567986	159567986	C	T	SNP	RXFP1	ENST00000307765	human	ensembl	74_37	+1	known	silent	c.1389	p.G463	0.817	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt	pfam_GPCR_Rhodpsn,pfam_Leu-rich_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Leu-rich_rpt_typical-subtyp,pfscan_LDrepeatLR_classA_rpt,pfscan_GPCR_Rhodpsn_7TM,prints_Relaxin_rcpt,prints_GPCR_Rhodpsn,prints_Gphrmn_rcpt_fam	-	no_errors	RXFP1	HGNC	ENSG00000171509				162	0	0	100	36	26.4706
PPID	0	genome.wustl.edu	37	4	159644354	159644354	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	159644354	159644354	A	G	SNP	PPID	ENST00000307720	human	ensembl	74_37	-1	known	splice_site	c.85+2	e1+2	1.000	-	-	-	no_errors	PPID	HGNC	ENSG00000171497				22	0	0	17	6	26.087
FNIP2	0	genome.wustl.edu	37	4	159789335	159789335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	159789335	159789335	G	A	SNP	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	missense	c.1616	p.R539Q	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				191	1	0.520833	84	50	37.3134
RAPGEF2	0	genome.wustl.edu	37	4	160235815	160235815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	160235815	160235815	G	A	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.265	p.D89N	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				88	0	0	51	17	25
RAPGEF2	0	genome.wustl.edu	37	4	160252923	160252923	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	160252923	160252923	T	G	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.1234	p.F412V	1.000	pfam_PDZ,superfamily_Ras_GEF_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756				199	0	0	136	60	30.6122
FSTL5	0	genome.wustl.edu	37	4	162402200	162402200	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	162402200	162402200	A	G	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1580	p.V527A	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				158	0	0	87	49	36.0294
FSTL5	0	genome.wustl.edu	37	4	162402250	162402250	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	162402250	162402250	T	G	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1530	p.K510N	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				192	0	0	159	11	6.47059
FSTL5	0	genome.wustl.edu	37	4	162463795	162463795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	162463795	162463795	C	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.1066	p.V356I	0.994	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				103	0	0	83	9	9.78261
NPY1R	0	genome.wustl.edu	37	4	164247294	164247294	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	164247294	164247294	C	T	SNP	NPY1R	ENST00000296533	human	ensembl	74_37	-1	known	missense	c.413	p.R138Q	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_Glucose_rcpt_Git3_N,pfscan_GPCR_Rhodpsn_7TM,prints_NPY1_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY1R	HGNC	ENSG00000164128				162	0	0	76	56	42.4242
TKTL2	0	genome.wustl.edu	37	4	164393208	164393208	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	164393208	164393208	A	C	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	missense	c.1679	p.V560G	0.832	pfam_Transketolase_C,superfamily_Transketo_C/Pyr-ferredox_oxred	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				160	0	0	101	34	25.1852
TKTL2	0	genome.wustl.edu	37	4	164394533	164394533	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	164394533	164394533	A	C	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	missense	c.354	p.F118L	0.978	pfam_Transketolase_N	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				97	0	0	57	20	25.974
TRIM61	0	genome.wustl.edu	37	4	165891030	165891030	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	165891030	165891030	A	G	SNP	TRIM61	ENST00000329314	human	ensembl	74_37	-1	known	missense	c.125	p.M42T	0.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM61	HGNC	ENSG00000183439				99	0	0	74	19	20.4301
TMEM192	0	genome.wustl.edu	37	4	166021968	166021968	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166021968	166021968	C	T	SNP	TMEM192	ENST00000306480	human	ensembl	74_37	-1	known	missense	c.251	p.G84E	1.000	NULL	NULL	-	no_errors	TMEM192	HGNC	ENSG00000170088				85	0	0	54	14	20.5882
KLHL2	0	genome.wustl.edu	37	4	166141138	166141138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166141138	166141138	G	A	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.79	p.E27K	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				92	0	0	54	14	20.5882
KLHL2	0	genome.wustl.edu	37	4	166141156	166141156	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166141156	166141156	A	G	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.97	p.T33A	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				83	0	0	55	14	20.2899
KLHL2	0	genome.wustl.edu	37	4	166232625	166232625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166232625	166232625	C	T	SNP	KLHL2	ENST00000226725	human	ensembl	74_37	+1	known	missense	c.1247	p.S416F	0.994	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL2	HGNC	ENSG00000109466				188	0	0	97	52	34.8993
KLHL2	0	genome.wustl.edu	37	4	166243336	166243336	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166243336	166243336	G	A	SNP	KLHL2	ENST00000509028	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.746	-	-	-	no_errors	KLHL2	HGNC	ENSG00000109466				26	0	0	14	6	30
CPE	0	genome.wustl.edu	37	4	166403472	166403472	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166403472	166403472	G	T	SNP	CPE	ENST00000402744	human	ensembl	74_37	+1	known	missense	c.751	p.D251Y	1.000	pfam_Peptidase_M14,smart_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPE	HGNC	ENSG00000109472				105	0	0	71	40	36.036
TLL1	0	genome.wustl.edu	37	4	166999181	166999181	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	166999181	166999181	T	G	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	nonsense	c.2441	p.L814*	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				64	0	0	34	20	37.037
DDX60	0	genome.wustl.edu	37	4	169194428	169194428	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	169194428	169194428	A	G	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	splice_site	c.2574+2	e17+2	0.996	-	-	-	no_errors	DDX60	HGNC	ENSG00000137628				56	0	0	39	22	36.0656
DDX60	0	genome.wustl.edu	37	4	169197322	169197322	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	169197322	169197322	C	T	SNP	DDX60	ENST00000393743	human	ensembl	74_37	-1	known	silent	c.1989	p.T663	0.004	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60	HGNC	ENSG00000137628				54	0	0	34	13	27.6596
DDX60L	0	genome.wustl.edu	37	4	169305863	169305863	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	169305863	169305863	A	G	SNP	DDX60L	ENST00000260184	human	ensembl	74_37	-1	known	missense	c.4016	p.V1339A	0.994	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX60L	HGNC	ENSG00000181381				53	0	0	20	16	44.4444
NEK1	0	genome.wustl.edu	37	4	170428878	170428878	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	170428878	170428878	G	A	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	silent	c.1899	p.I633	0.186	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				41	0	0	30	13	30.2326
MFAP3L	0	genome.wustl.edu	37	4	170913428	170913428	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	170913428	170913428	T	C	SNP	MFAP3L	ENST00000361618	human	ensembl	74_37	-1	known	missense	c.331	p.N111D	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MFAP3L	HGNC	ENSG00000198948				171	0	0	82	29	26.1261
GALNTL6	0	genome.wustl.edu	37	4	173930333	173930333	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	173930333	173930333	G	A	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.1376	p.R459Q	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				120	0	0	67	19	22.093
SAP30	0	genome.wustl.edu	37	4	174294593	174294593	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	174294593	174294593	G	A	SNP	SAP30	ENST00000296504	human	ensembl	74_37	+1	known	missense	c.368	p.R123Q	1.000	NULL	NULL	-	no_errors	SAP30	HGNC	ENSG00000164105				123	0	0	75	36	32.4324
SAP30	0	genome.wustl.edu	37	4	174298430	174298430	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	174298430	174298430	G	T	SNP	SAP30	ENST00000296504	human	ensembl	74_37	+1	known	missense	c.615	p.K205N	1.000	NULL	NULL	-	no_errors	SAP30	HGNC	ENSG00000164105				146	0	0	93	39	29.5455
CLRN2	0	genome.wustl.edu	37	4	17528593	17528593	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	17528593	17528593	C	T	SNP	CLRN2	ENST00000511148	human	ensembl	74_37	+1	known	missense	c.587	p.A196V	0.969	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLRN2	HGNC	ENSG00000249581				102	0	0	47	29	38.1579
LAP3	0	genome.wustl.edu	37	4	17609289	17609289	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	17609289	17609289	A	C	SNP	LAP3	ENST00000503467	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LAP3	HGNC	ENSG00000002549				30	0	0	21	9	30
WDR17	0	genome.wustl.edu	37	4	177067147	177067147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177067147	177067147	G	A	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.1603	p.D535N	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				88	0	0	44	8	15.3846
WDR17	0	genome.wustl.edu	37	4	177095773	177095773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177095773	177095773	G	A	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.3470	p.R1157Q	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				83	0	0	39	31	44.2857
SPATA4	0	genome.wustl.edu	37	4	177105979	177105979	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177105979	177105979	A	C	SNP	SPATA4	ENST00000280191	human	ensembl	74_37	-1	known	silent	c.870	p.S290	0.000	NULL	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628				90	0	0	71	28	28.2828
SPATA4	0	genome.wustl.edu	37	4	177109304	177109304	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177109304	177109304	T	G	SNP	SPATA4	ENST00000280191	human	ensembl	74_37	-1	known	missense	c.771	p.L257F	0.000	NULL	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628				70	0	0	42	20	32.2581
SPATA4	0	genome.wustl.edu	37	4	177113869	177113869	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177113869	177113869	G	A	SNP	SPATA4	ENST00000280191	human	ensembl	74_37	-1	known	silent	c.597	p.S199	0.700	pfam_DUF1042	pfam_DUF1042,pfam_CAMSAP_CH,superfamily_CH-domain	-	no_errors	SPATA4	HGNC	ENSG00000150628				77	0	0	44	18	29.0323
ASB5	0	genome.wustl.edu	37	4	177136836	177136836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177136836	177136836	C	T	SNP	ASB5	ENST00000296525	human	ensembl	74_37	-1	known	missense	c.905	p.R302Q	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB5	HGNC	ENSG00000164122				58	0	0	31	18	36.7347
SPCS3	0	genome.wustl.edu	37	4	177243323	177243323	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177243323	177243323	A	C	SNP	SPCS3	ENST00000503362	human	ensembl	74_37	+1	known	missense	c.146	p.K49T	1.000	pfam_SPC22,pirsf_SPC22	pfam_SPC22,pirsf_SPC22	-	no_errors	SPCS3	HGNC	ENSG00000129128				33	0	0	30	17	36.1702
VEGFC	0	genome.wustl.edu	37	4	177649045	177649045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177649045	177649045	C	T	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	1.000	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630				120	0	0	70	28	28.5714
VEGFC	0	genome.wustl.edu	37	4	177650885	177650885	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	177650885	177650885	C	A	SNP	VEGFC	ENST00000280193	human	ensembl	74_37	-1	known	missense	c.163	p.D55Y	1.000	NULL	pfam_PDGF/VEGF_dom,pfam_CXCXC_repeat,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	VEGFC	HGNC	ENSG00000150630				76	0	0	46	16	25.8065
AGA	0	genome.wustl.edu	37	4	178354419	178354419	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	178354419	178354419	A	C	SNP	AGA	ENST00000264595	human	ensembl	74_37	-1	known	missense	c.889	p.F297V	0.995	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	AGA	HGNC	ENSG00000038002				193	0	0	126	63	33.3333
NCAPG	0	genome.wustl.edu	37	4	17838918	17838918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	17838918	17838918	G	A	SNP	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	missense	c.2246	p.R749Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805				98	0	0	58	24	29.2683
NCAPG	0	genome.wustl.edu	37	4	17845005	17845005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	17845005	17845005	G	A	SNP	NCAPG	ENST00000251496	human	ensembl	74_37	+1	known	missense	c.3005	p.S1002N	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NCAPG	HGNC	ENSG00000109805				91	0	0	124	7	5.34351
FGFR3	0	genome.wustl.edu	37	4	1805474	1805474	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1805474	1805474	T	C	SNP	FGFR3	ENST00000260795	human	ensembl	74_37	+1	known	missense	c.986	p.V329A	1.000	pirsf_FGF_rcpt_fam,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_FGF_rcpt_fam,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FGFR3	HGNC	ENSG00000068078				75	0	0	35	18	33.9623
TENM3	0	genome.wustl.edu	37	4	183714517	183714517	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	183714517	183714517	G	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.6692	p.G2231V	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				83	0	0	37	24	39.3443
CLDN22	0	genome.wustl.edu	37	4	184240709	184240709	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	184240709	184240709	T	G	SNP	CLDN22	ENST00000323319	human	ensembl	74_37	-1	known	nonstop	c.663	p.*221Y	0.995	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin	-	no_errors	CLDN22	HGNC	ENSG00000177300				412	0	0	218	91	29.4498
STOX2	0	genome.wustl.edu	37	4	184931772	184931772	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	184931772	184931772	A	G	SNP	STOX2	ENST00000308497	human	ensembl	74_37	+1	known	missense	c.1781	p.K594R	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX2	HGNC	ENSG00000173320				49	0	0	37	22	37.2881
IRF2	0	genome.wustl.edu	37	4	185340688	185340688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	185340688	185340688	G	A	SNP	IRF2	ENST00000393593	human	ensembl	74_37	-1	known	missense	c.122	p.A41V	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF2	HGNC	ENSG00000168310				155	0	0	87	29	25
HELT	0	genome.wustl.edu	37	4	185940639	185940639	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	185940639	185940639	G	A	SNP	HELT	ENST00000338875	human	ensembl	74_37	+1	known	silent	c.258	p.A86	0.992	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HELT	HGNC	ENSG00000187821				19	0	0	11	5	31.25
SNX25	0	genome.wustl.edu	37	4	186244746	186244746	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186244746	186244746	C	A	SNP	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	missense	c.1049	p.S350Y	0.944	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				48	0	0	62	26	29.5455
SNX25	0	genome.wustl.edu	37	4	186272701	186272701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186272701	186272701	A	C	SNP	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	missense	c.1912	p.N638H	0.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				116	0	0	66	34	34
SNX25	0	genome.wustl.edu	37	4	186278858	186278858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186278858	186278858	T	G	SNP	SNX25	ENST00000264694	human	ensembl	74_37	+1	known	missense	c.2126	p.L709R	1.000	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_RGS_dom,pfam_Phox,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX25	HGNC	ENSG00000109762				109	0	0	63	25	28.4091
LRP2BP	0	genome.wustl.edu	37	4	186288369	186288369	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186288369	186288369	C	A	SNP	LRP2BP	ENST00000362004	human	ensembl	74_37	-1	known	nonsense	c.1015	p.E339*	1.000	NULL	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771				137	0	0	103	48	31.7881
CCDC110	0	genome.wustl.edu	37	4	186380271	186380271	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186380271	186380271	A	C	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.1470	p.I490M	0.853	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				42	0	0	46	9	16.3636
CCDC110	0	genome.wustl.edu	37	4	186381000	186381000	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186381000	186381000	T	G	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.741	p.Q247H	0.995	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				137	0	0	88	46	34.3284
SORBS2	0	genome.wustl.edu	37	4	186536109	186536109	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	186536109	186536109	A	C	SNP	SORBS2	ENST00000284776	human	ensembl	74_37	-1	known	missense	c.2759	p.L920R	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	SORBS2	HGNC	ENSG00000154556				148	0	0	76	30	28.3019
TLR3	0	genome.wustl.edu	37	4	187003649	187003649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187003649	187003649	G	A	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	missense	c.809	p.G270E	1.000	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				118	0	0	66	31	31.9588
FAM149A	0	genome.wustl.edu	37	4	187088351	187088351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187088351	187088351	G	A	SNP	FAM149A	ENST00000356371	human	ensembl	74_37	+1	known	missense	c.2183	p.R728Q	0.968	NULL	pfam_DUF3719	-	no_errors	FAM149A	HGNC	ENSG00000109794				158	0	0	94	52	35.6164
MTNR1A	0	genome.wustl.edu	37	4	187455635	187455635	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187455635	187455635	C	T	SNP	MTNR1A	ENST00000307161	human	ensembl	74_37	-1	known	silent	c.261	p.S87	0.081	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_Mel_1A_rcpt,prints_NPY_rcpt,prints_Mel_rcpt_1C	-	no_errors	MTNR1A	HGNC	ENSG00000168412				85	0	0	55	28	33.7349
FAT1	0	genome.wustl.edu	37	4	187517847	187517847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187517847	187517847	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.12847	p.E4283K	0.985	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				63	0	0	24	17	41.4634
FAT1	0	genome.wustl.edu	37	4	187524488	187524488	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187524488	187524488	A	C	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.11192	p.L3731R	0.319	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				59	0	0	21	17	44.7368
FAT1	0	genome.wustl.edu	37	4	187524871	187524871	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187524871	187524871	T	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.10809	p.K3603N	0.074	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				75	0	0	32	26	44.8276
FAT1	0	genome.wustl.edu	37	4	187532563	187532563	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187532563	187532563	T	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.9830	p.K3277T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				43	0	0	28	16	36.3636
FAT1	0	genome.wustl.edu	37	4	187541629	187541629	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187541629	187541629	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.6111	p.T2037	0.040	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				334	0	0	192	78	28.8889
FAT1	0	genome.wustl.edu	37	4	187542860	187542860	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187542860	187542860	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.4880	p.R1627Q	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				29	0	0	22	11	33.3333
FAT1	0	genome.wustl.edu	37	4	187549793	187549793	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	187549793	187549793	T	G	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.4448	p.Q1483P	0.660	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				92	0	0	56	18	24.3243
TRIML2	0	genome.wustl.edu	37	4	189012796	189012796	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	189012796	189012796	C	T	SNP	TRIML2	ENST00000512729	human	ensembl	74_37	-1	known	missense	c.895	p.E299K	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	-	no_errors	TRIML2	HGNC	ENSG00000179046				330	1	0.302115	160	58	26.6055
TRIML1	0	genome.wustl.edu	37	4	189064957	189064957	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	189064957	189064957	C	T	SNP	TRIML1	ENST00000507581	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRIML1	HGNC	ENSG00000184108				291	0	0	147	51	25.7576
WHSC1	0	genome.wustl.edu	37	4	1902902	1902902	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1902902	1902902	A	C	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	missense	c.521	p.K174T	0.970	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685				91	0	0	46	24	34.2857
HSP90AA4P	0	genome.wustl.edu	37	4	190394378	190394378	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	190394378	190394378	G	A	SNP	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100				81	0	0	35	12	25.5319
NELFA	0	genome.wustl.edu	37	4	1985339	1985339	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	1985339	1985339	G	T	SNP	NELFA	ENST00000382882	human	ensembl	74_37	-1	known	missense	c.1419	p.F473L	1.000	NULL	NULL	-	no_errors	NELFA	HGNC	ENSG00000185049				115	0	0	51	22	30.137
SLIT2	0	genome.wustl.edu	37	4	20598177	20598177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	20598177	20598177	G	A	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.3460	p.E1154K	0.999	pfam_EG-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				83	0	0	41	24	36.9231
SLIT2	0	genome.wustl.edu	37	4	20618673	20618673	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	20618673	20618673	T	G	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.3988	p.L1330V	0.997	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				119	0	0	51	27	34.6154
POLN	0	genome.wustl.edu	37	4	2172450	2172450	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	2172450	2172450	G	A	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.1510	p.P504S	0.820	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				193	0	0	110	52	32.0988
POLN	0	genome.wustl.edu	37	4	2210191	2210191	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	2210191	2210191	C	T	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	silent	c.237	p.Q79	0.568	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				89	0	0	55	28	33.7349
MXD4	0	genome.wustl.edu	37	4	2252282	2252282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	2252282	2252282	C	T	SNP	MXD4	ENST00000337190	human	ensembl	74_37	-1	known	missense	c.619	p.A207T	0.129	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD4	HGNC	ENSG00000123933				21	0	0	12	4	25
DHX15	0	genome.wustl.edu	37	4	24550623	24550623	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	24550623	24550623	C	A	SNP	DHX15	ENST00000336812	human	ensembl	74_37	-1	known	missense	c.1103	p.R368I	1.000	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606				70	0	0	46	29	38.6667
ZNF876P	0	genome.wustl.edu	37	4	247977	247977	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	247977	247977	T	C	SNP	ZNF876P	ENST00000356347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.072	-	-	-	no_errors	ZNF876P	HGNC	ENSG00000198155				32	0	0	28	7	20
ZNF876P	0	genome.wustl.edu	37	4	248195	248195	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	248195	248195	G	T	SNP	ZNF876P	ENST00000356347	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF876P	HGNC	ENSG00000198155				50	0	0	37	20	35.0877
ZNF876P	0	genome.wustl.edu	37	4	248322	248322	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	248322	248322	C	T	SNP	ZNF876P	ENST00000356347	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.948	-	-	-	no_errors	ZNF876P	HGNC	ENSG00000198155				19	0	0	23	7	23.3333
LGI2	0	genome.wustl.edu	37	4	25019737	25019737	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25019737	25019737	A	C	SNP	LGI2	ENST00000382114	human	ensembl	74_37	-1	known	missense	c.529	p.W177G	1.000	smart_Cys-rich_flank_reg_C	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012				133	0	0	81	35	30.1724
LGI2	0	genome.wustl.edu	37	4	25030162	25030162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25030162	25030162	C	T	SNP	LGI2	ENST00000382114	human	ensembl	74_37	-1	known	missense	c.236	p.R79Q	1.000	NULL	pfam_EPTP,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI2	HGNC	ENSG00000153012				34	0	0	13	8	38.0952
ZCCHC4	0	genome.wustl.edu	37	4	25315706	25315706	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25315706	25315706	G	T	SNP	ZCCHC4	ENST00000302874	human	ensembl	74_37	+1	known	nonsense	c.166	p.E56*	1.000	pfam_Znf_GRF	pfam_Znf_GRF,pfam_N6_adenine_Mtase-rel_euk,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZCCHC4	HGNC	ENSG00000168228				173	1	0.574713	112	64	36.3636
SLC34A2	0	genome.wustl.edu	37	4	25665855	25665855	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25665855	25665855	C	A	SNP	SLC34A2	ENST00000382051	human	ensembl	74_37	+1	known	missense	c.282	p.F94L	0.396	NULL	pfam_Na/Pi_transpt,superfamily_ABC1_TM_dom,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A2	HGNC	ENSG00000157765				187	0	0	81	56	40.8759
SEL1L3	0	genome.wustl.edu	37	4	25769163	25769163	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25769163	25769163	G	A	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	silent	c.2829	p.I943	1.000	NULL	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				8	0	0	5	6	54.5455
SEL1L3	0	genome.wustl.edu	37	4	25834646	25834646	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	25834646	25834646	G	A	SNP	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	nonsense	c.1069	p.R357*	0.980	superfamily_ConA-like_lec_gl_sf	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				104	0	0	55	29	34.5238
RBPJ	0	genome.wustl.edu	37	4	26407849	26407849	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	26407849	26407849	C	T	SNP	RBPJ	ENST00000342295	human	ensembl	74_37	+1	known	missense	c.151	p.L51F	1.000	pfam_LAG1_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_Beta-trefoil_DNA-bd_dom,pfam_LAG1_DNA-bd,pfam_IPT,superfamily_Beta-trefoil_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set	-	no_errors	RBPJ	HGNC	ENSG00000168214				96	0	0	72	39	35.1351
CCKAR	0	genome.wustl.edu	37	4	26483749	26483749	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	26483749	26483749	G	A	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	silent	c.798	p.S266	0.473	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				145	0	0	63	32	33.6842
ZNF732	0	genome.wustl.edu	37	4	266034	266034	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	266034	266034	A	T	SNP	ZNF732	ENST00000419098	human	ensembl	74_37	-1	known	missense	c.612	p.F204L	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF732	HGNC	ENSG00000186777				28	0	0	13	10	43.4783
TBC1D19	0	genome.wustl.edu	37	4	26685314	26685314	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	26685314	26685314	G	A	SNP	TBC1D19	ENST00000264866	human	ensembl	74_37	+1	known	silent	c.834	p.E278	1.000	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D19	HGNC	ENSG00000109680				120	0	0	78	31	28.4404
FAM193A	0	genome.wustl.edu	37	4	2673955	2673955	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	2673955	2673955	C	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	missense	c.1314	p.F438L	0.957	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				120	0	0	53	28	34.5679
STIM2	0	genome.wustl.edu	37	4	27019550	27019550	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	27019550	27019550	G	A	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	silent	c.1992	p.A664	0.954	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689				517	0	0	263	122	31.6883
ZNF732	0	genome.wustl.edu	37	4	289920	289920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	289920	289920	C	T	SNP	ZNF732	ENST00000419098	human	ensembl	74_37	-1	known	missense	c.28	p.A10T	0.235	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF732	HGNC	ENSG00000186777				81	0	0	55	29	34.5238
GRK4	0	genome.wustl.edu	37	4	3006044	3006044	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3006044	3006044	C	A	SNP	GRK4	ENST00000398052	human	ensembl	74_37	+1	known	silent	c.426	p.A142	0.193	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_RGS_dom,superfamily_Kinase-like_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Regulat_G_prot_signal_superfam,pfscan_Prot_kinase_dom,prints_GPCR_kinase	-	no_errors	GRK4	HGNC	ENSG00000125388				158	0	0	100	42	29.5775
PCDH7	0	genome.wustl.edu	37	4	30723560	30723560	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	30723560	30723560	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	silent	c.516	p.F172	0.993	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				15	0	0	8	8	50
PCDH7	0	genome.wustl.edu	37	4	30723906	30723906	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	30723906	30723906	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.862	p.R288C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				21	0	0	15	5	25
HTT	0	genome.wustl.edu	37	4	3088673	3088673	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3088673	3088673	G	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	nonsense	c.271	p.E91*	1.000	superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				50	0	0	38	16	29.6296
HTT	0	genome.wustl.edu	37	4	3138026	3138026	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3138026	3138026	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.2771	p.R924Q	0.999	pfam_HEAT,superfamily_ARM-type_fold	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				60	0	0	39	22	36.0656
HTT	0	genome.wustl.edu	37	4	3184144	3184144	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3184144	3184144	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	nonsense	c.4813	p.R1605*	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				100	0	0	45	25	35.7143
HTT	0	genome.wustl.edu	37	4	3201479	3201479	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3201479	3201479	G	A	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.5389	p.A1797T	0.996	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				108	0	0	55	30	35.2941
HTT	0	genome.wustl.edu	37	4	3210534	3210534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3210534	3210534	C	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	missense	c.6187	p.R2063C	1.000	NULL	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386				77	0	0	52	19	26.7606
RGS12	0	genome.wustl.edu	37	4	3318097	3318097	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3318097	3318097	T	C	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	missense	c.200	p.V67A	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				99	0	0	35	20	36.3636
HGFAC	0	genome.wustl.edu	37	4	3449301	3449301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3449301	3449301	G	A	SNP	HGFAC	ENST00000382774	human	ensembl	74_37	+1	known	missense	c.1438	p.E480K	1.000	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Coagulation_fac_XIIa/HGFA,pfam_Peptidase_S1,pfam_Kringle,pfam_FN_type2_col-bd,pfam_Fibronectin_type1,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,smart_EG-like_dom,smart_Fibronectin_type1,smart_Kringle,smart_Peptidase_S1,pfscan_EG-like_dom,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGFAC	HGNC	ENSG00000109758				467	0	0	192	101	34.471
LRPAP1	0	genome.wustl.edu	37	4	3516638	3516638	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	3516638	3516638	G	A	SNP	LRPAP1	ENST00000500728	human	ensembl	74_37	-1	known	silent	c.852	p.F284	0.759	pfam_Alpha_2_MRAP_C,superfamily_MG_RAP_rcpt_1	pfam_Alpha_2_MRAP_C,pfam_MG_RAP_rcpt_1,superfamily_MG_RAP_rcpt_1	-	no_errors	LRPAP1	HGNC	ENSG00000163956				204	0	0	89	47	34.5588
PTTG2	0	genome.wustl.edu	37	4	37962363	37962363	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	37962363	37962363	C	A	SNP	PTTG2	ENST00000504686	human	ensembl	74_37	+1	known	missense	c.308	p.S103Y	0.007	pfam_Securin_separation_inhibitor	pfam_Securin_separation_inhibitor	-	no_errors	PTTG2	HGNC	ENSG00000250254				159	0	0	111	49	30.625
KLF3	0	genome.wustl.edu	37	4	38690382	38690382	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38690382	38690382	G	A	SNP	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	silent	c.234	p.S78	0.110	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				115	0	0	60	29	32.5843
TLR10	0	genome.wustl.edu	37	4	38774898	38774898	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38774898	38774898	G	A	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	nonsense	c.2314	p.R772*	0.732	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				121	0	0	72	37	33.945
TLR10	0	genome.wustl.edu	37	4	38775961	38775961	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38775961	38775961	G	A	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	silent	c.1251	p.C417	0.942	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				103	0	0	97	23	19.1667
TLR1	0	genome.wustl.edu	37	4	38799017	38799017	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38799017	38799017	G	T	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	missense	c.1436	p.S479Y	0.241	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				163	0	0	80	62	43.662
TLR1	0	genome.wustl.edu	37	4	38799487	38799487	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38799487	38799487	G	T	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	silent	c.966	p.I322	0.793	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				76	0	0	60	22	26.8293
TMEM156	0	genome.wustl.edu	37	4	39000286	39000286	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	39000286	39000286	A	C	SNP	TMEM156	ENST00000381938	human	ensembl	74_37	-1	known	missense	c.332	p.F111C	1.000	NULL	NULL	-	no_errors	TMEM156	HGNC	ENSG00000121895				30	0	0	18	15	45.4545
WDR19	0	genome.wustl.edu	37	4	39276564	39276564	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	39276564	39276564	C	T	SNP	WDR19	ENST00000399820	human	ensembl	74_37	+1	known	silent	c.3702	p.I1234	0.979	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796				74	0	0	37	19	33.9286
RFC1	0	genome.wustl.edu	37	4	39290437	39290437	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	39290437	39290437	T	G	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	missense	c.3391	p.K1131Q	1.000	pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				98	0	0	64	29	31.1828
PDS5A	0	genome.wustl.edu	37	4	39905808	39905808	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	39905808	39905808	G	A	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	nonsense	c.1237	p.R413*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				27	0	0	15	6	28.5714
N4BP2	0	genome.wustl.edu	37	4	40119490	40119490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	40119490	40119490	C	T	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.1666	p.R556C	1.000	superfamily_P-loop_NTPase	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177				57	0	0	25	13	34.2105
APBB2	0	genome.wustl.edu	37	4	40823991	40823991	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	40823991	40823991	A	C	SNP	APBB2	ENST00000295974	human	ensembl	74_37	-1	known	missense	c.2006	p.F669C	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB2	HGNC	ENSG00000163697				126	0	0	48	28	36.8421
DCAF4L1	0	genome.wustl.edu	37	4	41984086	41984086	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	41984086	41984086	G	A	SNP	DCAF4L1	ENST00000333141	human	ensembl	74_37	+1	known	missense	c.277	p.E93K	0.980	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L1	HGNC	ENSG00000182308				114	0	0	81	8	8.98876
ATP8A1	0	genome.wustl.edu	37	4	42414996	42414996	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	42414996	42414996	G	A	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	silent	c.3432	p.I1144	0.927	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				40	0	0	28	25	47.1698
TMEM128	0	genome.wustl.edu	37	4	4248040	4248040	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	4248040	4248040	T	G	SNP	TMEM128	ENST00000382753	human	ensembl	74_37	-1	known	missense	c.128	p.K43T	1.000	NULL	NULL	-	no_errors	TMEM128	HGNC	ENSG00000132406				108	0	0	74	37	33.3333
ATP8A1	0	genome.wustl.edu	37	4	42577698	42577698	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	42577698	42577698	C	T	SNP	ATP8A1	ENST00000381668	human	ensembl	74_37	-1	known	missense	c.1147	p.E383K	1.000	tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A1	HGNC	ENSG00000124406				206	0	0	181	18	9.04523
GRXCR1	0	genome.wustl.edu	37	4	43032469	43032469	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	43032469	43032469	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	74_37	+1	known	missense	c.785	p.R262Q	1.000	superfamily_HSP_DnaJ_Cys-rich_dom	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC	ENSG00000215203				193	0	0	117	57	32.7586
ZNF721	0	genome.wustl.edu	37	4	435862	435862	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	435862	435862	T	G	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.2394	p.K798N	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				57	0	0	56	26	31.7073
ZNF721	0	genome.wustl.edu	37	4	437198	437198	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	437198	437198	C	A	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.1058	p.R353I	0.219	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				99	0	0	65	23	26.1364
ZNF721	0	genome.wustl.edu	37	4	437786	437786	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	437786	437786	T	G	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.470	p.K157T	0.036	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				160	0	0	103	49	32.2368
GNPDA2	0	genome.wustl.edu	37	4	44709820	44709820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	44709820	44709820	C	T	SNP	GNPDA2	ENST00000295448	human	ensembl	74_37	-1	known	missense	c.718	p.D240N	1.000	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	pfam_Glc/Gal-6P_isomerase,tigrfam_Glucosamine6P_isomerase	-	no_errors	GNPDA2	HGNC	ENSG00000163281				62	0	0	27	13	32.5
ZNF721	0	genome.wustl.edu	37	4	466372	466372	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	466372	466372	A	G	SNP	ZNF721	ENST00000511833	human	ensembl	74_37	-1	known	missense	c.26	p.V9A	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903				97	0	0	66	32	32.6531
COX7B2	0	genome.wustl.edu	37	4	46737011	46737011	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	46737011	46737011	G	A	SNP	COX7B2	ENST00000302930	human	ensembl	74_37	-1	known	silent	c.199	p.L67	0.705	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	pfam_Cyt_c_oxidase_suVIIB,superfamily_Cyt_c_oxidase_suVIIB_dom	-	no_errors	COX7B2	HGNC	ENSG00000170516				119	0	0	71	33	31.7308
GABRA4	0	genome.wustl.edu	37	4	46930668	46930668	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	46930668	46930668	A	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.1239	p.S413	0.002	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				112	0	0	59	32	35.1648
GABRB1	0	genome.wustl.edu	37	4	47405722	47405722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47405722	47405722	G	A	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	missense	c.829	p.A277T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				92	0	0	53	21	28.3784
ATP10D	0	genome.wustl.edu	37	4	47593305	47593305	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47593305	47593305	A	C	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	silent	c.4188	p.G1396	0.002	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				223	0	0	122	62	33.6957
CORIN	0	genome.wustl.edu	37	4	47597786	47597786	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47597786	47597786	G	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	silent	c.3081	p.V1027	0.000	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				108	1	0.917431	67	29	30.2083
CORIN	0	genome.wustl.edu	37	4	47602261	47602261	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47602261	47602261	G	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	silent	c.2916	p.G972	1.000	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				87	0	0	63	28	30.7692
CORIN	0	genome.wustl.edu	37	4	47645079	47645079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47645079	47645079	C	T	SNP	CORIN	ENST00000504584	human	ensembl	74_37	-1	novel	missense	c.2041	p.D681N	0.000	NULL	pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	CORIN	HGNC	ENSG00000145244				27	0	0	15	11	42.3077
CORIN	0	genome.wustl.edu	37	4	47663851	47663851	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47663851	47663851	C	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	nonsense	c.1612	p.E538*	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				61	0	0	40	16	28.5714
CORIN	0	genome.wustl.edu	37	4	47667215	47667215	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47667215	47667215	T	G	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.1423	p.N475H	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				124	0	0	74	28	27.451
CORIN	0	genome.wustl.edu	37	4	47765400	47765400	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47765400	47765400	C	A	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.613	p.D205Y	1.000	pirsf_Peptidase_S1A_corin,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244				32	0	0	18	8	30.7692
NFXL1	0	genome.wustl.edu	37	4	47887941	47887941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47887941	47887941	C	T	SNP	NFXL1	ENST00000381538	human	ensembl	74_37	-1	known	missense	c.1619	p.G540D	1.000	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448				283	0	0	161	81	33.4711
CNGA1	0	genome.wustl.edu	37	4	47939313	47939313	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47939313	47939313	T	G	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.1405	p.I469L	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				171	0	0	94	35	27.1318
CNGA1	0	genome.wustl.edu	37	4	47942804	47942804	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	47942804	47942804	C	T	SNP	CNGA1	ENST00000402813	human	ensembl	74_37	-1	known	missense	c.847	p.D283N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA1	HGNC	ENSG00000198515				61	0	0	69	18	20.6897
SLAIN2	0	genome.wustl.edu	37	4	48371900	48371900	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48371900	48371900	A	C	SNP	SLAIN2	ENST00000264313	human	ensembl	74_37	+1	known	missense	c.424	p.M142L	0.978	NULL	NULL	-	no_errors	SLAIN2	HGNC	ENSG00000109171				72	0	0	40	36	47.3684
SLC10A4	0	genome.wustl.edu	37	4	48486071	48486071	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48486071	48486071	G	A	SNP	SLC10A4	ENST00000273861	human	ensembl	74_37	+1	known	missense	c.493	p.E165K	1.000	pfam_BilAc/Na_symport	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248				27	0	0	26	4	13.3333
SLC10A4	0	genome.wustl.edu	37	4	48490559	48490559	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48490559	48490559	T	G	SNP	SLC10A4	ENST00000273861	human	ensembl	74_37	+1	known	missense	c.917	p.F306C	1.000	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A4	HGNC	ENSG00000145248				254	0	0	154	80	34.188
FRYL	0	genome.wustl.edu	37	4	48501327	48501327	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48501327	48501327	A	C	SNP	FRYL	ENST00000512810	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FRYL	HGNC	ENSG00000075539				32	0	0	20	10	33.3333
FRYL	0	genome.wustl.edu	37	4	48559550	48559550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48559550	48559550	G	A	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.4045	p.R1349C	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				215	0	0	138	58	29.5918
FRYL	0	genome.wustl.edu	37	4	48577170	48577170	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48577170	48577170	A	G	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.2810	p.V937A	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				121	0	0	80	30	27.2727
FRYL	0	genome.wustl.edu	37	4	48583531	48583531	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48583531	48583531	A	G	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.2078	p.V693A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				81	0	0	37	24	39.3443
FRYL	0	genome.wustl.edu	37	4	48611819	48611819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	48611819	48611819	C	T	SNP	FRYL	ENST00000358350	human	ensembl	74_37	-1	known	missense	c.433	p.D145N	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FRYL	HGNC	ENSG00000075539				38	0	0	26	9	25.7143
PIGG	0	genome.wustl.edu	37	4	499698	499698	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	499698	499698	C	T	SNP	PIGG	ENST00000453061	human	ensembl	74_37	+1	known	silent	c.552	p.F184	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGG	HGNC	ENSG00000174227				65	0	0	37	18	32.7273
CYTL1	0	genome.wustl.edu	37	4	5018581	5018581	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5018581	5018581	C	A	SNP	CYTL1	ENST00000307746	human	ensembl	74_37	-1	known	missense	c.309	p.M103I	1.000	NULL	NULL	-	no_errors	CYTL1	HGNC	ENSG00000170891				226	0	0	111	67	37.6404
LRRC66	0	genome.wustl.edu	37	4	52860895	52860895	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	52860895	52860895	T	C	SNP	LRRC66	ENST00000343457	human	ensembl	74_37	-1	known	missense	c.2293	p.K765E	0.003	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC66	HGNC	ENSG00000188993				129	0	0	67	25	27.1739
SPATA18	0	genome.wustl.edu	37	4	52946066	52946066	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	52946066	52946066	G	A	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.1336	p.E446K	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				236	0	0	129	60	31.746
LNX1	0	genome.wustl.edu	37	4	54343119	54343119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	54343119	54343119	C	T	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	missense	c.1693	p.E565K	0.975	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				215	0	0	131	45	25.5682
LNX1-AS1	0	genome.wustl.edu	37	4	54362652	54362652	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	54362652	54362652	C	A	SNP	LNX1-AS1	ENST00000502373	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LNX1-AS1	HGNC	ENSG00000250930				19	0	0	4	4	50
CHIC2	0	genome.wustl.edu	37	4	54880282	54880282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	54880282	54880282	C	T	SNP	CHIC2	ENST00000263921	human	ensembl	74_37	-1	known	missense	c.335	p.R112Q	1.000	pfam_Golgin_A_7/ERF4	pfam_Golgin_A_7/ERF4	-	no_errors	CHIC2	HGNC	ENSG00000109220				53	0	0	34	16	32
PDGFRA	0	genome.wustl.edu	37	4	55131147	55131147	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	55131147	55131147	G	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	silent	c.690	p.T230	0.919	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				165	0	0	97	44	31.2057
PDGFRA	0	genome.wustl.edu	37	4	55138668	55138668	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	55138668	55138668	A	G	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.1345	p.I449V	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				110	0	0	66	29	30.5263
PDGFRA	0	genome.wustl.edu	37	4	55139855	55139855	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	55139855	55139855	C	A	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.1516	p.L506I	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				82	0	0	43	23	34.8485
C4orf6	0	genome.wustl.edu	37	4	5528021	5528021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5528021	5528021	C	T	SNP	C4orf6	ENST00000195455	human	ensembl	74_37	+1	known	missense	c.245	p.T82I	0.000	NULL	NULL	-	no_errors	C4orf6	HGNC	ENSG00000082929				84	0	0	44	19	30.1587
KIT	0	genome.wustl.edu	37	4	55561801	55561801	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	55561801	55561801	T	C	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.191	p.V64A	0.905	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				102	0	0	58	21	26.5823
KIT	0	genome.wustl.edu	37	4	55575630	55575630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	55575630	55575630	G	A	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.1156	p.E386K	0.994	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				99	0	0	65	34	34.3434
NMU	0	genome.wustl.edu	37	4	56466696	56466696	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56466696	56466696	A	C	SNP	NMU	ENST00000264218	human	ensembl	74_37	-1	known	nonsense	c.482	p.L161*	0.977	pfam_NMU_C,smart_NMU_C	pfam_NMU_C,smart_NMU_C	-	no_errors	NMU	HGNC	ENSG00000109255				46	0	0	44	25	36.2319
NMU	0	genome.wustl.edu	37	4	56473499	56473499	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56473499	56473499	G	A	SNP	NMU	ENST00000264218	human	ensembl	74_37	-1	known	missense	c.326	p.S109L	0.998	NULL	pfam_NMU_C,smart_NMU_C	-	no_errors	NMU	HGNC	ENSG00000109255				61	0	0	50	25	33.3333
EXOC1	0	genome.wustl.edu	37	4	56736848	56736848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56736848	56736848	A	G	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	missense	c.608	p.N203S	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				91	0	0	53	25	32.0513
EVC2	0	genome.wustl.edu	37	4	5683025	5683025	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5683025	5683025	T	G	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	missense	c.832	p.K278Q	0.945	pfam_Limbin	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				66	0	0	35	16	31.3725
CEP135	0	genome.wustl.edu	37	4	56835228	56835228	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56835228	56835228	G	A	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	splice_site	c.1045-1	e8-1	1.000	-	-	-	no_errors	CEP135	HGNC	ENSG00000174799				38	0	0	42	7	14.2857
CEP135	0	genome.wustl.edu	37	4	56865579	56865579	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56865579	56865579	G	T	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	missense	c.2121	p.K707N	0.102	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				69	0	0	43	23	34.8485
CEP135	0	genome.wustl.edu	37	4	56884001	56884001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	56884001	56884001	C	T	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	missense	c.2990	p.S997L	0.983	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				42	0	0	9	21	70
AASDH	0	genome.wustl.edu	37	4	57204655	57204655	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57204655	57204655	A	G	SNP	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	silent	c.3210	p.S1070	1.000	superfamily_Quinonprotein_ADH-like_supfam	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				86	0	0	60	15	20
AASDH	0	genome.wustl.edu	37	4	57220879	57220879	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57220879	57220879	A	G	SNP	AASDH	ENST00000205214	human	ensembl	74_37	-1	known	missense	c.1202	p.V401A	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426				119	0	0	90	34	27.4194
ENSG00000270147	0	genome.wustl.edu	37	4	57262919	57262919	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57262919	57262919	C	A	SNP	ENSG00000270147	ENST00000602749	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	RP11-646I6.6	Clone_based_vega_gene	ENSG00000270147				85	0	0	60	24	28.5714
PPAT	0	genome.wustl.edu	37	4	57267619	57267619	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57267619	57267619	T	C	SNP	PPAT	ENST00000264220	human	ensembl	74_37	-1	known	missense	c.763	p.I255V	1.000	pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059				25	0	0	25	12	32.4324
EVC	0	genome.wustl.edu	37	4	5750029	5750029	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5750029	5750029	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.1094	p.A365V	0.784	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				73	0	0	35	11	23.913
REST	0	genome.wustl.edu	37	4	57777156	57777156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57777156	57777156	G	A	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.352	p.V118I	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				124	0	0	60	30	33.3333
REST	0	genome.wustl.edu	37	4	57796369	57796369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57796369	57796369	G	A	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.1345	p.E449K	0.910	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				52	0	0	47	20	29.8507
REST	0	genome.wustl.edu	37	4	57797984	57797984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57797984	57797984	A	G	SNP	REST	ENST00000309042	human	ensembl	74_37	+1	known	missense	c.2960	p.K987R	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				110	0	0	52	29	35.8025
NOA1	0	genome.wustl.edu	37	4	57834643	57834643	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57834643	57834643	A	C	SNP	NOA1	ENST00000264230	human	ensembl	74_37	-1	known	silent	c.1554	p.V518	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	NOA1	HGNC	ENSG00000084092				46	0	0	44	23	34.3284
POLR2B	0	genome.wustl.edu	37	4	57857005	57857005	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57857005	57857005	G	A	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.184	p.A62T	1.000	pfam_RNA_pol_bsu_protrusion	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				120	0	0	63	24	27.5862
POLR2B	0	genome.wustl.edu	37	4	57889730	57889730	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	57889730	57889730	A	C	SNP	POLR2B	ENST00000314595	human	ensembl	74_37	+1	known	missense	c.2750	p.K917T	1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpb2_4,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR2B	HGNC	ENSG00000047315				115	0	0	91	53	36.8056
CRMP1	0	genome.wustl.edu	37	4	5862925	5862925	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5862925	5862925	C	T	SNP	CRMP1	ENST00000324989	human	ensembl	74_37	-1	known	silent	c.483	p.E161	1.000	superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	CRMP1	HGNC	ENSG00000072832				162	0	0	64	32	33.3333
C4orf50	0	genome.wustl.edu	37	4	5961154	5961154	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	5961154	5961154	C	A	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	missense	c.2201	p.S734I	0.025	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215				173	0	0	87	27	23.6842
JAKMIP1	0	genome.wustl.edu	37	4	6066724	6066724	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	6066724	6066724	C	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	silent	c.1314	p.V438	1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				147	0	0	81	22	21.3592
EPHA5	0	genome.wustl.edu	37	4	66230858	66230858	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	66230858	66230858	C	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.2113	p.A705S	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				126	0	0	101	39	27.8571
EPHA5	0	genome.wustl.edu	37	4	66286258	66286258	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	66286258	66286258	T	C	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	silent	c.1428	p.K476	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				48	0	0	42	21	33.3333
EPHA5	0	genome.wustl.edu	37	4	66467723	66467723	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	66467723	66467723	G	T	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.546	p.S182R	0.995	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom,pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				139	0	0	95	32	25.1969
UBA6	0	genome.wustl.edu	37	4	68497427	68497427	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	68497427	68497427	A	C	SNP	UBA6	ENST00000322244	human	ensembl	74_37	-1	known	missense	c.2257	p.L753V	1.000	superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA6	HGNC	ENSG00000033178				27	0	0	27	12	30.7692
TMPRSS11F	0	genome.wustl.edu	37	4	68930556	68930556	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	68930556	68930556	C	A	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	nonsense	c.862	p.E288*	0.003	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				48	0	0	41	19	31.6667
TMPRSS11F	0	genome.wustl.edu	37	4	68930577	68930577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	68930577	68930577	G	A	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	missense	c.841	p.L281F	0.000	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				47	0	0	39	12	23.5294
YTHDC1	0	genome.wustl.edu	37	4	69198539	69198539	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	69198539	69198539	A	G	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.1000	p.S334P	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				68	0	0	35	19	35.1852
YTHDC1	0	genome.wustl.edu	37	4	69203598	69203598	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	69203598	69203598	G	A	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	nonsense	c.151	p.R51*	0.946	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				68	0	0	40	20	33.3333
UGT2B15	0	genome.wustl.edu	37	4	69513092	69513092	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	69513092	69513092	C	A	SNP	UGT2B15	ENST00000338206	human	ensembl	74_37	-1	known	missense	c.1323	p.E441D	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620				150	0	0	91	36	28.3465
UGT2B7	0	genome.wustl.edu	37	4	69962911	69962911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	69962911	69962911	G	A	SNP	UGT2B7	ENST00000305231	human	ensembl	74_37	+1	known	missense	c.673	p.E225K	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B7	HGNC	ENSG00000171234				88	0	0	69	19	21.5909
CCDC96	0	genome.wustl.edu	37	4	7043201	7043201	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	7043201	7043201	G	A	SNP	CCDC96	ENST00000310085	human	ensembl	74_37	-1	known	missense	c.1465	p.R489W	0.991	NULL	NULL	-	no_errors	CCDC96	HGNC	ENSG00000173013				283	1	0.352113	126	74	37
FDCSP	0	genome.wustl.edu	37	4	71096917	71096917	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71096917	71096917	G	T	SNP	FDCSP	ENST00000317987	human	ensembl	74_37	+1	known	missense	c.6	p.K2N	0.014	NULL	NULL	-	no_errors	FDCSP	HGNC	ENSG00000181617				134	0	0	91	34	27.2
CABS1	0	genome.wustl.edu	37	4	71201477	71201477	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71201477	71201477	G	A	SNP	CABS1	ENST00000273936	human	ensembl	74_37	+1	known	missense	c.721	p.E241K	0.081	NULL	NULL	-	no_errors	CABS1	HGNC	ENSG00000145309				99	0	0	59	27	31.3953
PROL1	0	genome.wustl.edu	37	4	71275761	71275761	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71275761	71275761	T	G	SNP	PROL1	ENST00000399575	human	ensembl	74_37	+1	putative	missense	c.716	p.F239C	0.001	NULL	NULL	-	no_errors	PROL1	HGNC	ENSG00000171199				97	0	0	33	36	52.1739
MUC7	0	genome.wustl.edu	37	4	71347004	71347004	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71347004	71347004	T	G	SNP	MUC7	ENST00000304887	human	ensembl	74_37	+1	known	silent	c.543	p.S181	0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195				266	0	0	145	80	35.5556
AMTN	0	genome.wustl.edu	37	4	71389592	71389592	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71389592	71389592	C	A	SNP	AMTN	ENST00000339336	human	ensembl	74_37	+1	known	missense	c.146	p.P49H	1.000	NULL	NULL	-	no_errors	AMTN	HGNC	ENSG00000187689				172	0	0	106	49	31.6129
ENAM	0	genome.wustl.edu	37	4	71497411	71497411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71497411	71497411	C	A	SNP	ENAM	ENST00000396073	human	ensembl	74_37	+1	known	missense	c.79	p.L27I	1.000	NULL	NULL	-	no_errors	ENAM	HGNC	ENSG00000132464				254	0	0	166	76	31.405
ENAM	0	genome.wustl.edu	37	4	71503462	71503462	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	71503462	71503462	C	T	SNP	ENAM	ENST00000472903	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ENAM	HGNC	ENSG00000132464				87	0	0	63	33	34.375
SLC4A4	0	genome.wustl.edu	37	4	72423482	72423482	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	72423482	72423482	C	A	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	missense	c.2817	p.F939L	0.989	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				83	0	0	45	21	31.8182
SLC4A4	0	genome.wustl.edu	37	4	72429587	72429587	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	72429587	72429587	C	T	SNP	SLC4A4	ENST00000264485	human	ensembl	74_37	+1	known	silent	c.3177	p.S1059	0.989	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493				126	0	0	66	43	39.4495
GC	0	genome.wustl.edu	37	4	72622523	72622523	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	72622523	72622523	A	C	SNP	GC	ENST00000273951	human	ensembl	74_37	-1	known	missense	c.940	p.F314V	1.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pfam_Serum_albumin_N,pfam_VitD-bind_III,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_VitD-bd,prints_ALB/AFP/VDB	-	no_errors	GC	HGNC	ENSG00000145321				82	0	0	50	28	35.8974
NPFFR2	0	genome.wustl.edu	37	4	73013275	73013275	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	73013275	73013275	A	G	SNP	NPFFR2	ENST00000308744	human	ensembl	74_37	+1	known	missense	c.1315	p.N439D	1.000	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NPFF_rcpt_2,prints_NPFF_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPFFR2	HGNC	ENSG00000056291				136	0	0	70	32	31.3725
COX18	0	genome.wustl.edu	37	4	73927616	73927616	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	73927616	73927616	C	A	SNP	COX18	ENST00000295890	human	ensembl	74_37	-1	known	nonsense	c.742	p.G248*	0.180	pfam_Membrane_insert_OXA1/ALB3/YidC	pfam_Membrane_insert_OXA1/ALB3/YidC	-	no_errors	COX18	HGNC	ENSG00000163626				39	0	0	18	14	43.75
ANKRD17	0	genome.wustl.edu	37	4	73979536	73979536	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	73979536	73979536	A	C	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.4374	p.I1458M	0.997	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466				148	0	0	136	57	29.5337
ALB	0	genome.wustl.edu	37	4	74283258	74283258	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	74283258	74283258	C	T	SNP	ALB	ENST00000295897	human	ensembl	74_37	+1	known	missense	c.1300	p.R434C	0.986	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	-	no_errors	ALB	HGNC	ENSG00000163631				86	0	0	51	28	35.443
ALB	0	genome.wustl.edu	37	4	74285345	74285345	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	74285345	74285345	T	G	SNP	ALB	ENST00000295897	human	ensembl	74_37	+1	known	missense	c.1774	p.F592V	1.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	-	no_errors	ALB	HGNC	ENSG00000163631				131	0	0	89	44	33.0827
PSAPL1	0	genome.wustl.edu	37	4	7436430	7436430	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	7436430	7436430	C	T	SNP	PSAPL1	ENST00000319098	human	ensembl	74_37	-1	known	silent	c.177	p.A59	0.002	pirsf_Saposin_chordata,prints_Saposin,pfscan_SapA	pirsf_Saposin_chordata,pfam_SapA,pfam_SapB_1,pfam_SapB_2,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAPL1	HGNC	ENSG00000178597				33	0	0	9	5	35.7143
RASSF6	0	genome.wustl.edu	37	4	74447980	74447980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	74447980	74447980	A	G	SNP	RASSF6	ENST00000342081	human	ensembl	74_37	-1	known	missense	c.691	p.S231P	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF6	HGNC	ENSG00000169435				19	0	0	19	10	34.4828
RASSF6	0	genome.wustl.edu	37	4	74477513	74477513	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	74477513	74477513	C	A	SNP	RASSF6	ENST00000342081	human	ensembl	74_37	-1	known	missense	c.96	p.K32N	0.001	NULL	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF6	HGNC	ENSG00000169435				159	0	0	77	42	35.2941
RCHY1	0	genome.wustl.edu	37	4	76419368	76419368	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76419368	76419368	A	C	SNP	RCHY1	ENST00000324439	human	ensembl	74_37	-1	known	missense	c.348	p.F116L	1.000	NULL	pfam_Znf_CHY,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RCHY1	HGNC	ENSG00000163743				30	0	0	24	10	29.4118
C4orf26	0	genome.wustl.edu	37	4	76489736	76489736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76489736	76489736	G	A	SNP	C4orf26	ENST00000435974	human	ensembl	74_37	+1	putative	missense	c.524	p.R175Q	0.000	NULL	NULL	-	no_errors	C4orf26	HGNC	ENSG00000174792				35	0	0	23	9	28.125
CDKL2	0	genome.wustl.edu	37	4	76521479	76521479	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76521479	76521479	C	T	SNP	CDKL2	ENST00000429927	human	ensembl	74_37	-1	known	silent	c.1368	p.P456	0.926	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDKL2	HGNC	ENSG00000138769				79	0	0	56	23	29.1139
G3BP2	0	genome.wustl.edu	37	4	76570777	76570777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76570777	76570777	C	T	SNP	G3BP2	ENST00000359707	human	ensembl	74_37	-1	known	missense	c.1286	p.R429H	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP2	HGNC	ENSG00000138757				129	0	0	88	31	26.0504
USO1	0	genome.wustl.edu	37	4	76715020	76715020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76715020	76715020	C	A	SNP	USO1	ENST00000538159	human	ensembl	74_37	+1	known	missense	c.1424	p.S475Y	0.991	pfam_Vesicle_Uso1_P115_head,superfamily_ARM-type_fold	pfam_Vesicle_Uso1_P115_head,pfam_Uso1_p115_C,superfamily_ARM-type_fold,superfamily_t-SNARE	-	no_errors	USO1	HGNC	ENSG00000138768				84	0	0	57	21	26.9231
PPEF2	0	genome.wustl.edu	37	4	76805796	76805796	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76805796	76805796	C	A	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	nonsense	c.697	p.E233*	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				250	0	0	139	76	35.3488
PPEF2	0	genome.wustl.edu	37	4	76811283	76811283	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	76811283	76811283	C	T	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	missense	c.244	p.D82N	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				112	0	0	60	27	31.0345
SORCS2	0	genome.wustl.edu	37	4	7705057	7705057	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	7705057	7705057	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	silent	c.1719	p.I573	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985				37	0	0	17	8	32
SORCS2	0	genome.wustl.edu	37	4	7706006	7706006	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	7706006	7706006	C	A	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	silent	c.1863	p.V621	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985				23	0	0	13	3	18.75
CCDC158	0	genome.wustl.edu	37	4	77252554	77252554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	77252554	77252554	C	T	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.2873	p.S958N	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				143	0	0	95	39	29.1045
SHROOM3	0	genome.wustl.edu	37	4	77700059	77700059	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	77700059	77700059	G	A	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.5720	p.G1907D	0.998	pfam_ASD2	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				83	0	0	36	24	40
AFAP1	0	genome.wustl.edu	37	4	7857230	7857230	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	7857230	7857230	C	T	SNP	AFAP1	ENST00000420658	human	ensembl	74_37	-1	known	silent	c.297	p.P99	0.363	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC	ENSG00000196526				109	1	0.909091	48	19	28.3582
FRAS1	0	genome.wustl.edu	37	4	79458157	79458157	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	79458157	79458157	C	A	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.11101	p.L3701I	1.000	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				117	0	0	71	26	26.8041
PAQR3	0	genome.wustl.edu	37	4	79845039	79845039	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	79845039	79845039	A	C	SNP	PAQR3	ENST00000511594	human	ensembl	74_37	-1	known	missense	c.765	p.I255M	1.000	pfam_HlyIII-related	pfam_HlyIII-related	-	no_errors	PAQR3	HGNC	ENSG00000163291				58	0	0	42	17	28.8136
GK2	0	genome.wustl.edu	37	4	80328097	80328097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	80328097	80328097	G	A	SNP	GK2	ENST00000358842	human	ensembl	74_37	-1	known	missense	c.1258	p.R420C	1.000	pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	pfam_Carb_kinase_FGGY_N,pfam_Carb_kinase_FGGY_C,tigrfam_Glycerol_kin	-	no_errors	GK2	HGNC	ENSG00000196475				169	0	0	82	41	33.3333
ANTXR2	0	genome.wustl.edu	37	4	80977160	80977160	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	80977160	80977160	T	G	SNP	ANTXR2	ENST00000307333	human	ensembl	74_37	-1	known	missense	c.304	p.I102L	0.999	pirsf_Anthrax_toxin_rcpt,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_Anthrax_toxin_rcpt,pfam_Anthrax_toxin_rcpt_C,pfam_Anthrax_toxin_rcpt_extracel,pfam_VWF_A,superfamily_Ig_E-set,smart_VWF_A,pfscan_VWF_A	-	no_errors	ANTXR2	HGNC	ENSG00000163297				9	0	0	3	8	72.7273
PRDM8	0	genome.wustl.edu	37	4	81124520	81124520	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	81124520	81124520	G	A	SNP	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	missense	c.1904	p.R635H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				35	0	0	16	15	48.3871
PRDM8	0	genome.wustl.edu	37	4	81124564	81124564	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	81124564	81124564	A	C	SNP	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	missense	c.1948	p.K650Q	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				29	0	0	17	13	43.3333
BMP3	0	genome.wustl.edu	37	4	81967324	81967324	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	81967324	81967324	C	A	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.749	p.S250Y	1.000	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				198	0	0	82	48	36.9231
BMP3	0	genome.wustl.edu	37	4	81974618	81974618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	81974618	81974618	C	A	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	missense	c.1347	p.F449L	1.000	pfam_TGF-b_C,smart_TGF-b_C,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				157	0	0	117	41	25.9494
SH3TC1	0	genome.wustl.edu	37	4	8214461	8214461	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	8214461	8214461	A	C	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.281	p.K94T	0.237	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				56	0	0	17	15	46.875
RASGEF1B	0	genome.wustl.edu	37	4	82362046	82362046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	82362046	82362046	C	T	SNP	RASGEF1B	ENST00000264400	human	ensembl	74_37	-1	known	missense	c.1046	p.R349Q	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670				234	0	0	140	59	29.6482
HTRA3	0	genome.wustl.edu	37	4	8305989	8305989	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	8305989	8305989	G	A	SNP	HTRA3	ENST00000307358	human	ensembl	74_37	+1	known	silent	c.1179	p.P393	0.073	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Peptidase_S1,pfam_Kazal_dom,pfam_PDZ,superfamily_Trypsin-like_Pept_dom,superfamily_PDZ,smart_IGFBP-like,smart_Kazal_dom,smart_PDZ,pfscan_PDZ,prints_Peptidase_S1C	-	no_errors	HTRA3	HGNC	ENSG00000170801				54	0	0	32	21	39.6226
ENSG00000227304	0	genome.wustl.edu	37	4	83416873	83416873	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83416873	83416873	T	C	SNP	ENSG00000227304	ENST00000488045	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-791G16.2	Clone_based_vega_gene	ENSG00000227304				15	0	0	7	6	46.1538
ENSG00000227304	0	genome.wustl.edu	37	4	83417367	83417367	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83417367	83417367	C	A	SNP	ENSG00000227304	ENST00000488045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-791G16.2	Clone_based_vega_gene	ENSG00000227304				93	0	0	59	27	31.3953
TMEM150C	0	genome.wustl.edu	37	4	83425759	83425759	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83425759	83425759	A	C	SNP	TMEM150C	ENST00000449862	human	ensembl	74_37	-1	known	missense	c.52	p.L18V	0.817	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150C	HGNC	ENSG00000249242				24	0	0	19	12	38.7097
SCD5	0	genome.wustl.edu	37	4	83602054	83602054	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83602054	83602054	G	A	SNP	SCD5	ENST00000319540	human	ensembl	74_37	-1	known	silent	c.375	p.F125	0.796	pfam_Fatty_acid_desaturase-1	pfam_Fatty_acid_desaturase-1,prints_Fatty_acid_desaturase-1_core	-	no_errors	SCD5	HGNC	ENSG00000145284				120	1	0.826446	71	41	36.6071
SEC31A	0	genome.wustl.edu	37	4	83770112	83770112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83770112	83770112	G	A	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	missense	c.2347	p.R783C	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				166	0	0	109	12	9.91736
SEC31A	0	genome.wustl.edu	37	4	83787987	83787987	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83787987	83787987	G	A	SNP	SEC31A	ENST00000432794	human	ensembl	74_37	-1	known	nonsense	c.1171	p.R391*	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674				214	1	0.465116	126	57	31.1475
THAP9	0	genome.wustl.edu	37	4	83840004	83840004	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	83840004	83840004	A	C	SNP	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	missense	c.2639	p.K880T	0.000	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				114	0	0	66	51	43.5897
WDFY3	0	genome.wustl.edu	37	4	85605098	85605098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	85605098	85605098	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.9724	p.R3242W	0.999	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				104	0	0	63	22	25.8824
WDFY3	0	genome.wustl.edu	37	4	85696261	85696261	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	85696261	85696261	G	T	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.4549	p.L1517I	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				56	0	0	34	36	51.4286
WDFY3	0	genome.wustl.edu	37	4	85731148	85731148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	85731148	85731148	C	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.2237	p.R746I	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				197	0	0	105	52	33.121
GPR78	0	genome.wustl.edu	37	4	8583065	8583065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	8583065	8583065	G	A	SNP	GPR78	ENST00000382487	human	ensembl	74_37	+1	known	missense	c.356	p.R119Q	0.996	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR78	HGNC	ENSG00000155269				30	0	0	8	8	50
GPR78	0	genome.wustl.edu	37	4	8589021	8589021	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	8589021	8589021	G	A	SNP	GPR78	ENST00000382487	human	ensembl	74_37	+1	known	silent	c.1023	p.P341	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR78	HGNC	ENSG00000155269				158	0	0	62	29	31.8681
MAPK10	0	genome.wustl.edu	37	4	87010469	87010469	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	87010469	87010469	G	T	SNP	MAPK10	ENST00000489368	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	MAPK10	HGNC	ENSG00000109339				16	0	0	7	7	50
MAPK10	0	genome.wustl.edu	37	4	87024399	87024399	+	Splice_Site	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	87024399	87024399	T	G	SNP	MAPK10	ENST00000359221	human	ensembl	74_37	-1	known	splice_site	c.367-2	e4-2	1.000	-	-	-	no_errors	MAPK10	HGNC	ENSG00000109339				71	0	0	40	18	31.0345
PTPN13	0	genome.wustl.edu	37	4	87622475	87622475	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	87622475	87622475	A	C	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.716	p.K239T	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				19	0	0	20	13	39.3939
PTPN13	0	genome.wustl.edu	37	4	87637691	87637691	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	87637691	87637691	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	nonsense	c.1204	p.R402*	0.922	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				11	0	0	5	6	54.5455
SLC10A6	0	genome.wustl.edu	37	4	87744921	87744921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	87744921	87744921	C	T	SNP	SLC10A6	ENST00000273905	human	ensembl	74_37	-1	known	missense	c.1054	p.A352T	0.000	NULL	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A6	HGNC	ENSG00000145283				97	0	0	51	20	28.169
DSPP	0	genome.wustl.edu	37	4	88533280	88533280	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	88533280	88533280	G	A	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	silent	c.75	p.E25	0.972	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591				57	0	0	30	15	33.3333
DSPP	0	genome.wustl.edu	37	4	88533818	88533818	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	88533818	88533818	G	T	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	missense	c.480	p.K160N	0.000	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591				78	0	0	34	21	38.1818
IBSP	0	genome.wustl.edu	37	4	88732678	88732678	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	88732678	88732678	C	T	SNP	IBSP	ENST00000226284	human	ensembl	74_37	+1	known	silent	c.570	p.N190	0.000	pfam_BSP_II	pfam_BSP_II	-	no_errors	IBSP	HGNC	ENSG00000029559				62	0	0	35	23	39.6552
MEPE	0	genome.wustl.edu	37	4	88767192	88767192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	88767192	88767192	C	T	SNP	MEPE	ENST00000361056	human	ensembl	74_37	+1	known	missense	c.1172	p.A391V	0.000	NULL	pfam_Osteoregulin	-	no_errors	MEPE	HGNC	ENSG00000152595				84	0	0	52	14	21.2121
PPM1K	0	genome.wustl.edu	37	4	89198321	89198321	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89198321	89198321	G	A	SNP	PPM1K	ENST00000608933	human	ensembl	74_37	-1	known	missense	c.515	p.S172L	0.029	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PPM1K	HGNC	ENSG00000163644				82	0	0	43	32	42.6667
HERC6	0	genome.wustl.edu	37	4	89311819	89311819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89311819	89311819	C	T	SNP	HERC6	ENST00000264346	human	ensembl	74_37	+1	known	missense	c.452	p.S151L	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC6	HGNC	ENSG00000138642				56	0	0	17	17	50
HERC5	0	genome.wustl.edu	37	4	89380566	89380566	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89380566	89380566	C	A	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	missense	c.334	p.L112I	0.159	superfamily_RCC1/BLIP-II	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				122	0	0	87	38	30.4
HERC5	0	genome.wustl.edu	37	4	89390312	89390312	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89390312	89390312	C	A	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	nonsense	c.1139	p.S380*	0.990	NULL	pfam_HECT,pfam_Reg_chr_condens,superfamily_HECT,superfamily_RCC1/BLIP-II,superfamily_Haem_Oase-like_multi-hlx,smart_HECT,pfscan_HECT,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	HERC5	HGNC	ENSG00000138646				54	0	0	29	8	21.6216
HERC3	0	genome.wustl.edu	37	4	89442674	89442674	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89442674	89442674	C	T	SNP	HERC3	ENST00000601319	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HERC3	HGNC	ENSG00000138641				25	0	0	10	4	28.5714
FAM13A	0	genome.wustl.edu	37	4	89658668	89658668	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89658668	89658668	C	G	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	missense	c.2601	p.Q867H	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				103	1	0.961538	54	28	34.1463
FAM13A	0	genome.wustl.edu	37	4	89709072	89709072	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	89709072	89709072	C	A	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	missense	c.1103	p.R368I	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				56	0	0	43	20	31.746
MMRN1	0	genome.wustl.edu	37	4	90856259	90856259	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	90856259	90856259	G	A	SNP	MMRN1	ENST00000264790	human	ensembl	74_37	+1	known	silent	c.1428	p.K476	1.000	NULL	pfam_C1q,pfam_EMI_domain,pfam_EG-like_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MMRN1	HGNC	ENSG00000138722				111	0	0	58	45	43.6893
MMRN1	0	genome.wustl.edu	37	4	90856603	90856603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	90856603	90856603	A	G	SNP	MMRN1	ENST00000264790	human	ensembl	74_37	+1	known	missense	c.1772	p.E591G	0.156	NULL	pfam_C1q,pfam_EMI_domain,pfam_EG-like_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MMRN1	HGNC	ENSG00000138722				84	0	0	54	27	33.3333
MMRN1	0	genome.wustl.edu	37	4	90856704	90856704	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	90856704	90856704	C	A	SNP	MMRN1	ENST00000264790	human	ensembl	74_37	+1	known	missense	c.1873	p.L625I	0.050	NULL	pfam_C1q,pfam_EMI_domain,pfam_EG-like_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C1q,prints_C1q,pfscan_C1q,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MMRN1	HGNC	ENSG00000138722				120	0	0	101	42	29.3706
CCSER1	0	genome.wustl.edu	37	4	91230341	91230341	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	91230341	91230341	T	G	SNP	CCSER1	ENST00000333691	human	ensembl	74_37	+1	known	silent	c.906	p.A302	0.995	NULL	NULL	-	no_errors	CCSER1	HGNC	ENSG00000184305				251	0	0	148	66	30.8411
GRID2	0	genome.wustl.edu	37	4	94411866	94411866	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	94411866	94411866	C	A	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	silent	c.1935	p.I645	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				140	0	0	73	45	38.1356
SMARCAD1	0	genome.wustl.edu	37	4	95191964	95191964	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	95191964	95191964	G	T	SNP	SMARCAD1	ENST00000359052	human	ensembl	74_37	+1	known	nonsense	c.1567	p.E523*	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_CUE,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAD1	HGNC	ENSG00000163104				96	0	0	65	27	29.3478
RAP1GDS1	0	genome.wustl.edu	37	4	99313106	99313106	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	99313106	99313106	C	T	SNP	RAP1GDS1	ENST00000339360	human	ensembl	74_37	+1	known	missense	c.515	p.S172L	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	RAP1GDS1	HGNC	ENSG00000138698				33	0	0	28	6	17.6471
TSPAN5	0	genome.wustl.edu	37	4	99399882	99399882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	99399882	99399882	C	T	SNP	TSPAN5	ENST00000305798	human	ensembl	74_37	-1	known	missense	c.530	p.R177Q	1.000	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN5	HGNC	ENSG00000168785				115	0	0	63	32	33.6842
ADH5	0	genome.wustl.edu	37	4	99993587	99993587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	99993587	99993587	C	T	SNP	ADH5	ENST00000296412	human	ensembl	74_37	-1	known	missense	c.1106	p.R369Q	1.000	superfamily_GroES-like,tigrfam_ADH_3	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,tigrfam_ADH_3	-	no_errors	ADH5	HGNC	ENSG00000197894				34	0	0	23	10	30.303
SLCO4C1	0	genome.wustl.edu	37	5	101592925	101592925	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	101592925	101592925	T	C	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	missense	c.1363	p.K455E	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				64	0	0	38	13	25.4902
SLCO6A1	0	genome.wustl.edu	37	5	101735385	101735385	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	101735385	101735385	A	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.1688	p.F563C	0.669	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				82	0	0	62	29	31.8681
SLCO6A1	0	genome.wustl.edu	37	5	101795417	101795417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	101795417	101795417	C	T	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.964	p.A322T	0.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				113	0	0	62	25	28.7356
NUDT12	0	genome.wustl.edu	37	5	102895125	102895125	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	102895125	102895125	T	C	SNP	NUDT12	ENST00000230792	human	ensembl	74_37	-1	known	missense	c.251	p.D84G	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874				83	0	0	56	36	39.1304
FBXL17	0	genome.wustl.edu	37	5	107216831	107216831	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	107216831	107216831	G	A	SNP	FBXL17	ENST00000542267	human	ensembl	74_37	-1	known	silent	c.1872	p.V624	0.220	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL17	HGNC	ENSG00000145743				120	0	0	84	44	34.375
FER	0	genome.wustl.edu	37	5	108203635	108203635	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	108203635	108203635	G	T	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	nonsense	c.649	p.E217*	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				54	0	0	43	17	28.3333
MAN2A1	0	genome.wustl.edu	37	5	109155379	109155379	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	109155379	109155379	C	T	SNP	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	nonsense	c.2119	p.R707*	0.986	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				98	0	0	71	33	31.7308
MAN2A1	0	genome.wustl.edu	37	5	109183456	109183456	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	109183456	109183456	C	T	SNP	MAN2A1	ENST00000261483	human	ensembl	74_37	+1	known	nonsense	c.2941	p.R981*	1.000	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A1	HGNC	ENSG00000112893				34	0	0	39	24	38.0952
WDR36	0	genome.wustl.edu	37	5	110445966	110445966	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	110445966	110445966	T	C	SNP	WDR36	ENST00000506538	human	ensembl	74_37	+1	known	missense	c.1573	p.S525P	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_SSU_processome_Utp21,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR36	HGNC	ENSG00000134987				122	0	0	131	17	11.4865
CTNND2	0	genome.wustl.edu	37	5	11082831	11082831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	11082831	11082831	T	C	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2765	p.D922G	1.000	superfamily_ARM-type_fold,pfscan_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				152	0	0	79	30	27.5229
EPB41L4A	0	genome.wustl.edu	37	5	111754705	111754705	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	111754705	111754705	A	C	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	missense	c.32	p.F11C	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				81	0	0	34	28	45.1613
APC	0	genome.wustl.edu	37	5	112151261	112151261	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112151261	112151261	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.904	p.R302*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				96	0	0	47	18	27.6923
APC	0	genome.wustl.edu	37	5	112173621	112173621	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112173621	112173621	A	G	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.2330	p.D777G	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				115	0	0	68	43	38.7387
APC	0	genome.wustl.edu	37	5	112174393	112174393	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112174393	112174393	G	A	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	silent	c.3102	p.E1034	0.997	pfam_APC_15aa_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				100	0	0	51	36	41.3793
APC	0	genome.wustl.edu	37	5	112174916	112174916	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112174916	112174916	G	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.3625	p.E1209*	0.270	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				116	0	0	71	50	41.3223
APC	0	genome.wustl.edu	37	5	112175639	112175639	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112175639	112175639	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.4348	p.R1450*	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				120	0	0	58	31	34.8315
APC	0	genome.wustl.edu	37	5	112177901	112177901	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112177901	112177901	C	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.6610	p.R2204*	0.999	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				123	0	0	72	34	32.0755
REEP5	0	genome.wustl.edu	37	5	112222851	112222851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112222851	112222851	C	T	SNP	REEP5	ENST00000504247	human	ensembl	74_37	-1	putative	missense	c.242	p.R81Q	0.513	NULL	NULL	-	no_errors	REEP5	HGNC	ENSG00000129625				70	0	0	42	13	23.6364
DCP2	0	genome.wustl.edu	37	5	112321534	112321534	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112321534	112321534	G	A	SNP	DCP2	ENST00000389063	human	ensembl	74_37	+1	known	missense	c.56	p.R19Q	1.000	pfam_mRNA_decapping_BoxA	pfam_mRNA_decapping_BoxA,pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	DCP2	HGNC	ENSG00000172795				125	0	0	78	37	32.1739
TSSK1B	0	genome.wustl.edu	37	5	112770308	112770308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112770308	112770308	C	T	SNP	TSSK1B	ENST00000390666	human	ensembl	74_37	-1	known	missense	c.229	p.E77K	0.981	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TSSK1B	HGNC	ENSG00000212122				84	0	0	41	17	29.3103
YTHDC2	0	genome.wustl.edu	37	5	112862484	112862484	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112862484	112862484	T	C	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	splice_site	c.675+2	e4+2	1.000	-	-	-	no_errors	YTHDC2	HGNC	ENSG00000047188				50	0	0	33	19	36.5385
YTHDC2	0	genome.wustl.edu	37	5	112896785	112896785	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	112896785	112896785	G	A	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.2225	p.R742Q	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				41	0	0	22	17	43.5897
AQPEP	0	genome.wustl.edu	37	5	115298524	115298524	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	115298524	115298524	G	A	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	silent	c.210	p.P70	0.001	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				82	0	0	42	14	25
DMXL1	0	genome.wustl.edu	37	5	118485264	118485264	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	118485264	118485264	G	T	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	nonsense	c.3742	p.E1248*	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				142	0	0	92	53	36.5517
DMXL1	0	genome.wustl.edu	37	5	118503325	118503325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	118503325	118503325	C	A	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	missense	c.5164	p.Q1722K	1.000	pfam_Rav1p_C	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				16	0	0	19	7	26.9231
DMXL1	0	genome.wustl.edu	37	5	118582939	118582939	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	118582939	118582939	T	G	SNP	DMXL1	ENST00000505312	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DMXL1	HGNC	ENSG00000172869				31	0	0	14	18	56.25
HSD17B4	0	genome.wustl.edu	37	5	118861613	118861613	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	118861613	118861613	T	C	SNP	HSD17B4	ENST00000256216	human	ensembl	74_37	+1	known	silent	c.1575	p.G525	0.997	pfam_MaoC_dom	pfam_MaoC_dom,pfam_DH_sc/Rdtase_SDR,pfam_SCP2_sterol-bd_dom,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	HSD17B4	HGNC	ENSG00000133835				103	0	0	56	25	30.8642
FAM170A	0	genome.wustl.edu	37	5	118969821	118969821	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	118969821	118969821	G	T	SNP	FAM170A	ENST00000515256	human	ensembl	74_37	+1	known	missense	c.378	p.M126I	1.000	NULL	NULL	-	no_errors	FAM170A	HGNC	ENSG00000164334				101	0	0	60	28	31.8182
PRR16	0	genome.wustl.edu	37	5	119800232	119800232	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	119800232	119800232	A	G	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	silent	c.51	p.G17	0.967	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838				18	0	0	9	5	35.7143
PRR16	0	genome.wustl.edu	37	5	119800268	119800268	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	119800268	119800268	G	T	SNP	PRR16	ENST00000407149	human	ensembl	74_37	+1	known	missense	c.87	p.Q29H	1.000	NULL	NULL	-	no_errors	PRR16	HGNC	ENSG00000184838				18	0	0	5	6	54.5455
SNCAIP	0	genome.wustl.edu	37	5	121759111	121759111	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	121759111	121759111	G	A	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.820	p.D274N	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				159	0	0	79	41	34.1667
SNX2	0	genome.wustl.edu	37	5	122137575	122137575	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	122137575	122137575	A	C	SNP	SNX2	ENST00000379516	human	ensembl	74_37	+1	known	missense	c.402	p.E134D	1.000	pfam_Sorting_nexin_N	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX2	HGNC	ENSG00000205302				56	0	0	67	27	28.7234
CEP120	0	genome.wustl.edu	37	5	122724294	122724294	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	122724294	122724294	G	T	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.1262	p.S421Y	0.003	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				144	0	0	82	51	38.3459
CEP120	0	genome.wustl.edu	37	5	122729052	122729052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	122729052	122729052	C	T	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	missense	c.752	p.R251H	1.000	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944				109	0	0	75	31	29.2453
ZNF608	0	genome.wustl.edu	37	5	124080003	124080003	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	124080003	124080003	C	T	SNP	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	missense	c.680	p.S227N	1.000	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				158	0	0	78	33	29.7297
GRAMD3	0	genome.wustl.edu	37	5	125819236	125819236	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	125819236	125819236	T	G	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	missense	c.841	p.S281A	0.988	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324				69	0	0	53	29	35.3659
MEGF10	0	genome.wustl.edu	37	5	126791103	126791103	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	126791103	126791103	G	T	SNP	MEGF10	ENST00000274473	human	ensembl	74_37	+1	known	missense	c.3036	p.K1012N	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,superfamily_Proteinase_amylase_inhib_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF10	HGNC	ENSG00000145794				204	0	0	145	64	30.622
TERT	0	genome.wustl.edu	37	5	1272354	1272354	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	1272354	1272354	G	A	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	silent	c.2328	p.F776	0.640	pfam_RVT,pfscan_RVT	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				44	0	0	17	8	32
FBN2	0	genome.wustl.edu	37	5	127615904	127615904	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	127615904	127615904	G	T	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.7118	p.S2373Y	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				80	0	0	46	21	31.3433
FBN2	0	genome.wustl.edu	37	5	127641543	127641543	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	127641543	127641543	A	C	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.5520	p.S1840R	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				142	0	0	89	56	38.6207
FBN2	0	genome.wustl.edu	37	5	127648405	127648405	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	127648405	127648405	G	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	silent	c.4800	p.G1600	0.995	pirsf_FBN,pfam_TB_dom,superfamily_TB_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				492	2	0.404858	285	144	33.5664
FBN2	0	genome.wustl.edu	37	5	127782261	127782261	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	127782261	127782261	C	A	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	nonsense	c.865	p.G289*	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,superfamily_TB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829				119	0	0	87	37	29.8387
SLC27A6	0	genome.wustl.edu	37	5	128302039	128302039	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	128302039	128302039	A	C	SNP	SLC27A6	ENST00000262462	human	ensembl	74_37	+1	known	missense	c.209	p.K70T	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396				140	0	0	62	39	38.6139
SLC27A6	0	genome.wustl.edu	37	5	128362977	128362977	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	128362977	128362977	T	G	SNP	SLC27A6	ENST00000262462	human	ensembl	74_37	+1	known	missense	c.1407	p.D469E	0.001	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A6	HGNC	ENSG00000113396				159	0	0	115	62	35.0282
TERT	0	genome.wustl.edu	37	5	1294533	1294533	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	1294533	1294533	G	A	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	silent	c.468	p.C156	0.834	NULL	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				18	0	0	9	7	43.75
CHSY3	0	genome.wustl.edu	37	5	129520286	129520286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	129520286	129520286	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.1451	p.R484Q	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				72	0	0	47	21	30.8824
RAPGEF6	0	genome.wustl.edu	37	5	130940376	130940376	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	130940376	130940376	G	T	SNP	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	missense	c.80	p.T27N	1.000	superfamily_cNMP-bd-like	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				37	0	0	28	14	33.3333
ACSL6	0	genome.wustl.edu	37	5	131298258	131298258	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	131298258	131298258	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	silent	c.1827	p.A609	0.040	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				89	0	0	60	28	31.8182
ACSL6	0	genome.wustl.edu	37	5	131321104	131321104	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	131321104	131321104	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	silent	c.912	p.T304	0.058	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398				63	0	0	25	12	32.4324
IRF1	0	genome.wustl.edu	37	5	131822766	131822766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	131822766	131822766	G	A	SNP	IRF1	ENST00000245414	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347				654	0	0	293	139	32.1759
IL4	0	genome.wustl.edu	37	5	132009824	132009824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	132009824	132009824	G	A	SNP	IL4	ENST00000231449	human	ensembl	74_37	+1	known	missense	c.82	p.D28N	0.000	pfam_IL-4,superfamily_4_helix_cytokine-like_core,smart_IL-4/IL-13,pirsf_IL-4	pfam_IL-4,superfamily_4_helix_cytokine-like_core,smart_IL-4/IL-13,pirsf_IL-4,prints_IL-4	-	no_errors	IL4	HGNC	ENSG00000113520				205	1	0.485437	92	58	38.6667
KIF3A	0	genome.wustl.edu	37	5	132034929	132034929	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	132034929	132034929	T	G	SNP	KIF3A	ENST00000378735	human	ensembl	74_37	-1	known	missense	c.1994	p.Q665P	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF3A	HGNC	ENSG00000131437				240	0	0	135	78	36.6197
AFF4	0	genome.wustl.edu	37	5	132216807	132216807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	132216807	132216807	G	A	SNP	AFF4	ENST00000265343	human	ensembl	74_37	-1	known	missense	c.3436	p.R1146C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364				80	0	0	46	27	36.9863
CLPTM1L	0	genome.wustl.edu	37	5	1334416	1334416	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	1334416	1334416	G	A	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	silent	c.879	p.V293	0.169	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				71	0	0	35	14	28.5714
PHF15	0	genome.wustl.edu	37	5	133871564	133871564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	133871564	133871564	G	A	SNP	PHF15	ENST00000395003	human	ensembl	74_37	+1	known	missense	c.17	p.R6Q	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143				79	0	0	42	20	32.2581
PHF15	0	genome.wustl.edu	37	5	133909341	133909341	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	133909341	133909341	A	C	SNP	PHF15	ENST00000395003	human	ensembl	74_37	+1	known	missense	c.1441	p.N481H	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143				78	0	0	66	14	17.5
SAR1B	0	genome.wustl.edu	37	5	133944178	133944178	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	133944178	133944178	C	A	SNP	SAR1B	ENST00000402673	human	ensembl	74_37	-1	known	nonsense	c.364	p.E122*	1.000	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_SAR1,smart_Small_GTPase_ARF,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	SAR1B	HGNC	ENSG00000152700				41	0	0	32	10	23.8095
CAMLG	0	genome.wustl.edu	37	5	134086512	134086512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	134086512	134086512	G	A	SNP	CAMLG	ENST00000297156	human	ensembl	74_37	+1	known	missense	c.763	p.E255K	1.000	pirsf_Ca_signal-mod_cyclophilin_lig	pirsf_Ca_signal-mod_cyclophilin_lig	-	no_errors	CAMLG	HGNC	ENSG00000164615				95	0	0	51	20	28.169
C5orf24	0	genome.wustl.edu	37	5	134190891	134190891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	134190891	134190891	G	A	SNP	C5orf24	ENST00000338051	human	ensembl	74_37	+1	known	missense	c.301	p.G101R	1.000	NULL	NULL	-	no_errors	C5orf24	HGNC	ENSG00000181904				160	0	0	92	43	31.8519
TRPC7	0	genome.wustl.edu	37	5	135567128	135567128	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	135567128	135567128	G	T	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.1954	p.L652I	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				33	0	0	16	8	33.3333
TRPC7	0	genome.wustl.edu	37	5	135693035	135693035	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	135693035	135693035	T	C	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.41	p.H14R	1.000	prints_TRPC7_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018				115	0	0	49	24	32.8767
DNAH5	0	genome.wustl.edu	37	5	13708403	13708403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13708403	13708403	C	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.13167	p.M4389I	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				149	0	0	85	51	37.5
MYOT	0	genome.wustl.edu	37	5	137206353	137206353	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137206353	137206353	G	A	SNP	MYOT	ENST00000239926	human	ensembl	74_37	+1	known	missense	c.13	p.E5K	1.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYOT	HGNC	ENSG00000120729				266	0	0	146	80	35.3982
MYOT	0	genome.wustl.edu	37	5	137217750	137217750	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137217750	137217750	A	C	SNP	MYOT	ENST00000239926	human	ensembl	74_37	+1	known	missense	c.772	p.N258H	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYOT	HGNC	ENSG00000120729				122	0	0	77	36	31.8584
PKD2L2	0	genome.wustl.edu	37	5	137241990	137241990	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137241990	137241990	T	C	SNP	PKD2L2	ENST00000508883	human	ensembl	74_37	+1	known	missense	c.842	p.F281S	1.000	pfam_PKD1_2_channel	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795				98	0	0	68	45	39.823
PKD2L2	0	genome.wustl.edu	37	5	137242046	137242046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137242046	137242046	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	74_37	+1	known	missense	c.898	p.E300K	1.000	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795				67	0	0	60	24	28.5714
FAM13B	0	genome.wustl.edu	37	5	137284799	137284799	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137284799	137284799	A	C	SNP	FAM13B	ENST00000033079	human	ensembl	74_37	-1	known	missense	c.1939	p.F647V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13B	HGNC	ENSG00000031003				136	0	0	80	39	32.7731
KIF20A	0	genome.wustl.edu	37	5	137518869	137518869	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137518869	137518869	C	T	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	nonsense	c.844	p.R282*	0.002	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984				119	0	0	66	32	32.6531
DNAH5	0	genome.wustl.edu	37	5	13753355	13753355	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13753355	13753355	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10859	p.R3620Q	0.001	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				73	0	0	23	36	61.0169
GFRA3	0	genome.wustl.edu	37	5	137589038	137589038	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137589038	137589038	A	C	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	missense	c.1051	p.F351V	0.341	prints_GDNF_rcpt_A3	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				13	0	0	13	3	18.75
CDC25C	0	genome.wustl.edu	37	5	137627783	137627783	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137627783	137627783	C	T	SNP	CDC25C	ENST00000323760	human	ensembl	74_37	-1	known	missense	c.638	p.R213H	1.000	pfam_MPI_Phosphatase	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25C	HGNC	ENSG00000158402				218	0	0	95	45	32.1429
DNAH5	0	genome.wustl.edu	37	5	13762932	13762932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13762932	13762932	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10180	p.E3394K	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				82	0	0	60	22	26.8293
DNAH5	0	genome.wustl.edu	37	5	13769652	13769652	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13769652	13769652	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	silent	c.9678	p.A3226	0.280	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				187	0	0	122	56	31.4607
DNAH5	0	genome.wustl.edu	37	5	13769697	13769697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13769697	13769697	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.9633	p.K3211N	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				176	0	0	109	52	32.2981
KDM3B	0	genome.wustl.edu	37	5	137715275	137715275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137715275	137715275	C	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.583	p.P195S	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				107	0	0	48	27	36
KDM3B	0	genome.wustl.edu	37	5	137771343	137771343	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137771343	137771343	C	T	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.5240	p.A1747V	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				38	0	0	19	6	24
ETF1	0	genome.wustl.edu	37	5	137844015	137844015	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137844015	137844015	A	C	SNP	ETF1	ENST00000360541	human	ensembl	74_37	-1	known	missense	c.1293	p.F431L	1.000	NULL	pfam_eRF1_2,pfam_eRF1_3,pfam_eRF1_1_Pelota,superfamily_Release_factor_eRF1/aRF1_N,tigrfam_Peptide_chain-rel_eRF1/aRF1	-	no_errors	ETF1	HGNC	ENSG00000120705				52	0	0	28	9	24.3243
HSPA9	0	genome.wustl.edu	37	5	137892159	137892159	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	137892159	137892159	G	A	SNP	HSPA9	ENST00000297185	human	ensembl	74_37	-1	known	silent	c.1944	p.F648	0.580	pfam_Hsp_70_fam,tigrfam_Chaperone_DnaK	pfam_Hsp_70_fam,pfam_MreB_Mrl,pfam_Carb_kinase_FGGY_C,prints_Hsp_70_fam,tigrfam_Chaperone_DnaK	-	no_errors	HSPA9	HGNC	ENSG00000113013				297	0	0	165	77	31.8182
DNAH5	0	genome.wustl.edu	37	5	13811916	13811916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13811916	13811916	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.7247	p.R2416H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				82	0	0	57	20	25.974
CTNNA1	0	genome.wustl.edu	37	5	138160307	138160307	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	138160307	138160307	A	G	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.677	p.Q226R	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				90	0	0	48	20	29.4118
CTNNA1	0	genome.wustl.edu	37	5	138160426	138160426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	138160426	138160426	G	A	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	missense	c.796	p.D266N	0.998	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				180	0	0	100	52	34.2105
LRRTM2	0	genome.wustl.edu	37	5	138208713	138208713	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	138208713	138208713	C	A	SNP	LRRTM2	ENST00000274711	human	ensembl	74_37	-1	known	nonsense	c.1537	p.E513*	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM2	HGNC	ENSG00000146006				185	0	0	110	59	34.9112
SIL1	0	genome.wustl.edu	37	5	138386648	138386648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	138386648	138386648	C	T	SNP	SIL1	ENST00000265195	human	ensembl	74_37	-1	known	missense	c.332	p.R111Q	0.008	NULL	superfamily_ARM-type_fold	-	no_errors	SIL1	HGNC	ENSG00000120725				144	0	0	90	40	30.7692
DNAH5	0	genome.wustl.edu	37	5	13850896	13850896	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13850896	13850896	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.4979	p.K1660T	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				172	0	0	86	41	32.2835
DNAH5	0	genome.wustl.edu	37	5	13865867	13865867	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13865867	13865867	A	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.4265	p.V1422A	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				58	0	0	36	21	36.8421
SLC23A1	0	genome.wustl.edu	37	5	138715727	138715727	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	138715727	138715727	C	T	SNP	SLC23A1	ENST00000353963	human	ensembl	74_37	-1	known	missense	c.698	p.R233H	0.998	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A1	HGNC	ENSG00000170482				38	0	0	22	6	21.4286
DNAH5	0	genome.wustl.edu	37	5	13914039	13914039	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13914039	13914039	T	G	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.1349	p.K450T	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				36	0	0	37	13	26
PSD2	0	genome.wustl.edu	37	5	139216473	139216473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	139216473	139216473	G	A	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.1481	p.R494Q	1.000	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				208	0	0	99	39	28.2609
PSD2	0	genome.wustl.edu	37	5	139217339	139217339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	139217339	139217339	G	A	SNP	PSD2	ENST00000274710	human	ensembl	74_37	+1	known	missense	c.1795	p.D599N	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom,prints_PH_dom-spectrin-type	-	no_errors	PSD2	HGNC	ENSG00000146005				84	0	0	38	14	26.9231
NRG2	0	genome.wustl.edu	37	5	139231256	139231256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	139231256	139231256	G	A	SNP	NRG2	ENST00000545385	human	ensembl	74_37	-1	known	missense	c.1711	p.R571C	0.176	pfam_Neuregulin_1_C	pfam_Neuregulin_1_C,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_EG-like_dom,pfscan_Ig-like_dom	-	no_errors	NRG2	HGNC	ENSG00000158458				123	0	0	57	24	29.6296
DNAH5	0	genome.wustl.edu	37	5	13923469	13923469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	13923469	13923469	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.358	p.D120N	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				228	0	0	157	64	28.9593
TMCO6	0	genome.wustl.edu	37	5	140022539	140022539	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140022539	140022539	A	G	SNP	TMCO6	ENST00000252100	human	ensembl	74_37	+1	known	missense	c.737	p.H246R	0.995	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119				137	0	0	56	19	25.3333
TMCO6	0	genome.wustl.edu	37	5	140023501	140023501	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140023501	140023501	A	G	SNP	TMCO6	ENST00000252100	human	ensembl	74_37	+1	known	missense	c.1073	p.K358R	0.061	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119				147	0	0	72	20	21.7391
WDR55	0	genome.wustl.edu	37	5	140047890	140047890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140047890	140047890	G	A	SNP	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	missense	c.263	p.R88Q	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				164	0	0	80	42	34.4262
HARS2	0	genome.wustl.edu	37	5	140077629	140077629	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140077629	140077629	T	C	SNP	HARS2	ENST00000230771	human	ensembl	74_37	+1	known	missense	c.1427	p.V476A	1.000	pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,tigrfam_His-tRNA-ligase	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,superfamily_Anticodon-bd,pirsf_HisRS/HisZ,pfscan_aa-tRNA-synth_II,tigrfam_His-tRNA-ligase	-	no_errors	HARS2	HGNC	ENSG00000112855				79	0	0	50	31	38.2716
PCDHA1	0	genome.wustl.edu	37	5	140166397	140166397	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140166397	140166397	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	silent	c.522	p.P174	0.087	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				148	0	0	95	12	11.215
PCDHA2	0	genome.wustl.edu	37	5	140174848	140174848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140174848	140174848	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.299	p.A100V	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969				309	0	0	194	92	32.1678
PCDHA3	0	genome.wustl.edu	37	5	140183184	140183184	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140183184	140183184	A	C	SNP	PCDHA3	ENST00000532566	human	ensembl	74_37	+1	known	missense	c.2402	p.N801T	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				72	0	0	44	15	25.4237
PCDHA4	0	genome.wustl.edu	37	5	140187116	140187116	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140187116	140187116	A	C	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	missense	c.344	p.Q115P	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				218	0	0	115	89	43.6275
PCDHA4	0	genome.wustl.edu	37	5	140187186	140187186	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140187186	140187186	G	T	SNP	PCDHA4	ENST00000530339	human	ensembl	74_37	+1	known	missense	c.414	p.K138N	0.001	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967				197	0	0	115	47	29.0123
PCDHA6	0	genome.wustl.edu	37	5	140208802	140208802	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140208802	140208802	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1126	p.D376N	0.965	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				268	0	0	168	59	25.9912
PCDHA7	0	genome.wustl.edu	37	5	140214350	140214350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140214350	140214350	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.382	p.D128N	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				266	0	0	124	81	39.5122
PCDHA8	0	genome.wustl.edu	37	5	140221499	140221499	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140221499	140221499	A	C	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.593	p.K198T	0.911	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				119	0	0	99	9	8.33333
PCDHA9	0	genome.wustl.edu	37	5	140228097	140228097	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140228097	140228097	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	missense	c.17	p.R6Q	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				233	0	0	111	73	39.6739
PCDHA11	0	genome.wustl.edu	37	5	140249484	140249484	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140249484	140249484	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.796	p.A266T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				25	0	0	15	7	31.8182
PCDHA12	0	genome.wustl.edu	37	5	140255526	140255526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140255526	140255526	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.469	p.A157T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				163	0	0	70	52	42.623
PCDHAC1	0	genome.wustl.edu	37	5	140307492	140307492	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140307492	140307492	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.1015	p.E339K	0.997	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				240	0	0	130	73	35.9606
PCDHAC1	0	genome.wustl.edu	37	5	140307515	140307515	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140307515	140307515	G	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.1038	p.S346	0.006	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				214	0	0	122	47	27.8107
PCDHAC1	0	genome.wustl.edu	37	5	140308872	140308872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140308872	140308872	C	T	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	missense	c.2395	p.R799W	0.614	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383				204	0	0	114	55	32.5444
PCDHB1	0	genome.wustl.edu	37	5	140431993	140431993	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140431993	140431993	A	C	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.938	p.E313A	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				122	0	0	77	52	40.3101
PCDHB1	0	genome.wustl.edu	37	5	140432001	140432001	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140432001	140432001	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.946	p.D316N	0.991	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				126	0	0	83	57	40.7143
PCDHB1	0	genome.wustl.edu	37	5	140432773	140432773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140432773	140432773	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.1718	p.C573Y	0.989	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				141	0	0	65	23	26.1364
PCDHB1	0	genome.wustl.edu	37	5	140432871	140432871	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140432871	140432871	C	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.1816	p.H606N	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				115	0	0	51	28	35.443
PCDHB1	0	genome.wustl.edu	37	5	140432958	140432958	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140432958	140432958	G	T	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.1903	p.D635Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				204	0	0	108	51	32.0755
PCDHB3	0	genome.wustl.edu	37	5	140481185	140481185	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140481185	140481185	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.952	p.D318N	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				84	0	0	58	37	38.9474
PCDHB3	0	genome.wustl.edu	37	5	140482283	140482283	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140482283	140482283	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.2050	p.D684N	0.244	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				349	1	0.285714	174	79	31.2253
PCDHB4	0	genome.wustl.edu	37	5	140502262	140502262	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140502262	140502262	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	nonsense	c.682	p.R228*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				161	0	0	92	63	40.6452
PCDHB5	0	genome.wustl.edu	37	5	140515899	140515899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140515899	140515899	G	A	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.883	p.E295K	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				234	0	0	135	64	32.1608
PCDHB6	0	genome.wustl.edu	37	5	140529924	140529924	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140529924	140529924	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.86	p.S29L	0.000	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				146	0	0	96	36	27.2727
PCDHB6	0	genome.wustl.edu	37	5	140530736	140530736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140530736	140530736	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.898	p.R300W	0.428	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				127	0	0	89	43	32.5758
PCDHB7	0	genome.wustl.edu	37	5	140552652	140552652	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140552652	140552652	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.236	p.S79L	0.003	pfam_Cadherin_N,superfamily_Cadherin-like,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				126	0	0	65	33	33.6735
PCDHB7	0	genome.wustl.edu	37	5	140553101	140553101	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140553101	140553101	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.685	p.R229C	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				119	0	0	71	33	31.7308
PCDHB7	0	genome.wustl.edu	37	5	140553637	140553637	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140553637	140553637	A	C	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1221	p.K407N	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				129	0	0	61	41	40.1961
PCDHB8	0	genome.wustl.edu	37	5	140557991	140557991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140557991	140557991	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.376	p.D126N	1.000	superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				77	0	0	35	13	27.0833
PCDHB8	0	genome.wustl.edu	37	5	140558153	140558153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140558153	140558153	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.538	p.R180W	0.020	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				181	0	0	110	35	24.1379
PCDHB8	0	genome.wustl.edu	37	5	140559338	140559338	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140559338	140559338	G	A	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1723	p.E575K	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				144	0	0	89	21	19.0909
PCDHB8	0	genome.wustl.edu	37	5	140559922	140559922	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140559922	140559922	A	G	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.2307	p.K769	0.887	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				155	1	0.641026	92	34	26.9841
PCDHB10	0	genome.wustl.edu	37	5	140573028	140573028	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140573028	140573028	C	A	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	silent	c.903	p.I301	0.011	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				101	0	0	72	39	35.1351
PCDHB11	0	genome.wustl.edu	37	5	140579519	140579519	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140579519	140579519	G	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	nonsense	c.172	p.E58*	0.019	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				106	0	0	68	37	35.2381
PCDHB11	0	genome.wustl.edu	37	5	140579834	140579834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140579834	140579834	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.487	p.G163R	0.988	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				184	0	0	102	44	30.137
PCDHB11	0	genome.wustl.edu	37	5	140581471	140581471	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140581471	140581471	C	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	silent	c.2124	p.F708	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				416	0	0	186	68	26.7717
PCDHB13	0	genome.wustl.edu	37	5	140594772	140594772	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140594772	140594772	G	A	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	silent	c.1077	p.E359	0.037	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				372	0	0	188	101	34.9481
PCDHB14	0	genome.wustl.edu	37	5	140605445	140605445	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140605445	140605445	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	nonsense	c.2368	p.R790*	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				108	0	0	67	34	33.6634
PCDHB18	0	genome.wustl.edu	37	5	140615714	140615714	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140615714	140615714	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				205	0	0	134	78	36.7925
PCDHB15	0	genome.wustl.edu	37	5	140625165	140625165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140625165	140625165	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.19	p.R7C	0.001	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				89	0	0	45	20	30.7692
PCDHB15	0	genome.wustl.edu	37	5	140625274	140625274	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140625274	140625274	C	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.128	p.S43Y	0.935	pfam_Cadherin_N,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				111	0	0	71	26	26.8041
PCDHB15	0	genome.wustl.edu	37	5	140625481	140625481	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140625481	140625481	A	C	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.335	p.K112T	0.966	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				185	1	0.537634	88	53	37.5887
PCDHB15	0	genome.wustl.edu	37	5	140627444	140627444	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140627444	140627444	C	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.2298	p.F766L	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				183	0	0	92	70	43.2099
SLC25A2	0	genome.wustl.edu	37	5	140682859	140682859	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140682859	140682859	C	A	SNP	SLC25A2	ENST00000239451	human	ensembl	74_37	-1	known	nonsense	c.574	p.E192*	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A2	HGNC	ENSG00000120329				157	0	0	85	42	33.0709
PCDHGA1	0	genome.wustl.edu	37	5	140710513	140710513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140710513	140710513	C	T	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	missense	c.262	p.R88C	0.956	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				299	0	0	173	84	32.6848
PCDHGA1	0	genome.wustl.edu	37	5	140711198	140711198	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140711198	140711198	C	A	SNP	PCDHGA1	ENST00000517417	human	ensembl	74_37	+1	known	nonsense	c.947	p.S316*	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				97	0	0	66	37	35.9223
PCDHGA1	0	genome.wustl.edu	37	5	140712719	140712719	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140712719	140712719	C	A	SNP	PCDHGA1	ENST00000378105	human	ensembl	74_37	+1	known	missense	c.2468	p.S823Y	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA1	HGNC	ENSG00000204956				69	0	0	24	23	48.9362
PCDHGB1	0	genome.wustl.edu	37	5	140730274	140730274	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140730274	140730274	C	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.447	p.F149L	0.010	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				248	0	0	137	71	34.1346
PCDHGB1	0	genome.wustl.edu	37	5	140730670	140730670	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140730670	140730670	C	A	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	silent	c.843	p.S281	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				199	0	0	106	33	23.741
PCDHGB1	0	genome.wustl.edu	37	5	140731944	140731944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140731944	140731944	C	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.2117	p.A706V	0.016	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				264	0	0	150	83	35.6223
PCDHGA4	0	genome.wustl.edu	37	5	140734861	140734861	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140734861	140734861	C	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.94	p.L32I	1.000	pfam_Cadherin_N,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576				142	0	0	72	30	29.4118
PCDHGB2	0	genome.wustl.edu	37	5	140740020	140740020	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140740020	140740020	C	T	SNP	PCDHGB2	ENST00000522605	human	ensembl	74_37	+1	known	silent	c.318	p.F106	0.908	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB2	HGNC	ENSG00000253910				192	1	0.518135	106	47	30.719
PCDHGB3	0	genome.wustl.edu	37	5	140750426	140750426	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140750426	140750426	A	G	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	silent	c.465	p.E155	0.109	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				334	0	0	174	79	31.2253
PCDHGB3	0	genome.wustl.edu	37	5	140751953	140751953	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140751953	140751953	C	T	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	silent	c.1992	p.F664	0.953	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				167	0	0	77	37	32.4561
PCDHGB3	0	genome.wustl.edu	37	5	140752194	140752194	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140752194	140752194	G	A	SNP	PCDHGB3	ENST00000576222	human	ensembl	74_37	+1	known	missense	c.2233	p.E745K	0.010	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB3	HGNC	ENSG00000262209				99	0	0	56	37	39.7849
PCDHGA7	0	genome.wustl.edu	37	5	140764273	140764273	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140764273	140764273	T	G	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.1807	p.W603G	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				186	0	0	107	32	23.0216
PCDHGA7	0	genome.wustl.edu	37	5	140764319	140764319	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140764319	140764319	C	T	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.1853	p.A618V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				164	0	0	83	18	17.8218
PCDHGB4	0	genome.wustl.edu	37	5	140769585	140769585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140769585	140769585	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	missense	c.2134	p.R712C	0.086	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				339	0	0	176	87	33.0798
PCDHGB4	0	genome.wustl.edu	37	5	140769650	140769650	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140769650	140769650	C	T	SNP	PCDHGB4	ENST00000519479	human	ensembl	74_37	+1	known	silent	c.2199	p.S733	0.806	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB4	HGNC	ENSG00000253953				350	0	0	196	106	35.0993
PCDHGA8	0	genome.wustl.edu	37	5	140772850	140772850	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140772850	140772850	C	T	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.470	p.A157V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				136	0	0	81	32	28.3186
PCDHGA8	0	genome.wustl.edu	37	5	140773459	140773459	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140773459	140773459	C	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.1079	p.S360Y	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767				121	0	0	62	36	36.7347
PCDHGB6	0	genome.wustl.edu	37	5	140788389	140788389	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140788389	140788389	C	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.620	p.S207Y	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				40	0	0	19	9	32.1429
PCDHGB6	0	genome.wustl.edu	37	5	140788952	140788952	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140788952	140788952	T	C	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1183	p.Y395H	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				59	0	0	50	23	31.5068
PCDHGB6	0	genome.wustl.edu	37	5	140789915	140789915	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140789915	140789915	C	T	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	nonsense	c.2146	p.R716*	0.080	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				223	0	0	103	51	33.1169
PCDHGA10	0	genome.wustl.edu	37	5	140793736	140793736	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140793736	140793736	C	A	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	missense	c.994	p.L332I	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				20	0	0	16	4	20
PCDHGA10	0	genome.wustl.edu	37	5	140794687	140794687	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140794687	140794687	G	T	SNP	PCDHGA10	ENST00000398610	human	ensembl	74_37	+1	known	missense	c.1945	p.A649S	0.030	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA10	HGNC	ENSG00000253846				205	0	0	101	50	33.1126
PCDHGA11	0	genome.wustl.edu	37	5	140801986	140801986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140801986	140801986	A	G	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.1192	p.T398A	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				67	0	0	43	22	33.8462
PCDHGA11	0	genome.wustl.edu	37	5	140802023	140802023	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140802023	140802023	T	C	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	missense	c.1229	p.V410A	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				145	0	0	77	35	31.25
PCDHGA11	0	genome.wustl.edu	37	5	140802987	140802987	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140802987	140802987	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	silent	c.2193	p.G731	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				127	1	0.78125	59	18	23.3766
PCDHGB8P	0	genome.wustl.edu	37	5	140807610	140807610	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140807610	140807610	A	G	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				107	0	0	51	19	27.1429
PCDHGA12	0	genome.wustl.edu	37	5	140811030	140811030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140811030	140811030	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.704	p.A235V	0.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				161	0	0	70	36	33.9623
PCDHGA12	0	genome.wustl.edu	37	5	140811351	140811351	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140811351	140811351	A	G	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	missense	c.1025	p.D342G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				165	0	0	71	42	37.1681
PCDHGA12	0	genome.wustl.edu	37	5	140812460	140812460	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140812460	140812460	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.2134	p.L712	0.992	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				260	0	0	114	70	38.0435
PCDHGC4	0	genome.wustl.edu	37	5	140865298	140865298	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140865298	140865298	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	silent	c.558	p.S186	0.978	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				125	0	0	62	30	32.6087
PCDHGC4	0	genome.wustl.edu	37	5	140866394	140866394	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140866394	140866394	C	T	SNP	PCDHGC4	ENST00000306593	human	ensembl	74_37	+1	known	missense	c.1654	p.R552C	0.884	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC4	HGNC	ENSG00000242419				225	0	0	95	50	34.4828
DIAPH1	0	genome.wustl.edu	37	5	140951552	140951552	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	140951552	140951552	C	T	SNP	DIAPH1	ENST00000253811	human	ensembl	74_37	-1	known	missense	c.2414	p.R805H	0.995	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Formin_homology_1,pfam_Drf_DAD,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DIAPH1	HGNC	ENSG00000131504				133	0	0	72	38	34.5455
RELL2	0	genome.wustl.edu	37	5	141019684	141019684	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	141019684	141019684	G	T	SNP	RELL2	ENST00000297164	human	ensembl	74_37	+1	known	missense	c.701	p.S234I	0.045	NULL	pfam_TNF_rcpt_RELT	-	no_errors	RELL2	HGNC	ENSG00000164620				72	0	0	44	21	32.3077
PCDH1	0	genome.wustl.edu	37	5	141244951	141244951	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	141244951	141244951	G	A	SNP	PCDH1	ENST00000287008	human	ensembl	74_37	-1	known	silent	c.945	p.I315	0.157	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH1	HGNC	ENSG00000156453				168	0	0	91	44	32.5926
PCDH12	0	genome.wustl.edu	37	5	141335704	141335704	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	141335704	141335704	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	silent	c.1713	p.S571	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				108	0	0	49	30	37.9747
PCDH12	0	genome.wustl.edu	37	5	141336702	141336702	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	141336702	141336702	C	A	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	missense	c.715	p.D239Y	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				152	0	0	67	27	28.7234
PCDH12	0	genome.wustl.edu	37	5	141337067	141337067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	141337067	141337067	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	missense	c.350	p.A117V	0.984	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555				191	0	0	76	44	36.6667
NR3C1	0	genome.wustl.edu	37	5	142780030	142780030	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	142780030	142780030	G	A	SNP	NR3C1	ENST00000231509	human	ensembl	74_37	-1	known	silent	c.375	p.S125	1.000	pfam_Glcrtcd_rcpt,prints_Glcrtcd_rcpt	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580				176	0	0	115	54	31.9527
KCTD16	0	genome.wustl.edu	37	5	143586725	143586725	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	143586725	143586725	A	C	SNP	KCTD16	ENST00000507359	human	ensembl	74_37	+1	known	missense	c.448	p.I150L	1.000	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD16	HGNC	ENSG00000183775				130	0	0	71	29	29
TRIO	0	genome.wustl.edu	37	5	14462881	14462881	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	14462881	14462881	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.5514	p.G1838	0.827	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				224	0	0	97	37	27.6119
LARS	0	genome.wustl.edu	37	5	145503552	145503552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	145503552	145503552	G	A	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.3089	p.S1030L	1.000	tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				100	0	0	68	32	32
TCERG1	0	genome.wustl.edu	37	5	145883629	145883629	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	145883629	145883629	T	C	SNP	TCERG1	ENST00000509787	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCERG1	HGNC	ENSG00000113649				21	0	0	13	11	45.8333
TCERG1	0	genome.wustl.edu	37	5	145886637	145886637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	145886637	145886637	G	A	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	missense	c.2777	p.R926Q	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				195	0	0	112	59	34.5029
PPP2R2B	0	genome.wustl.edu	37	5	146070775	146070775	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	146070775	146070775	G	A	SNP	PPP2R2B	ENST00000394414	human	ensembl	74_37	-1	known	silent	c.561	p.S187	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55,prints_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				120	0	0	50	35	41.1765
DPYSL3	0	genome.wustl.edu	37	5	146778797	146778797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	146778797	146778797	C	T	SNP	DPYSL3	ENST00000398514	human	ensembl	74_37	-1	known	missense	c.1129	p.E377K	1.000	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYSL3	HGNC	ENSG00000113657				222	0	0	110	59	34.9112
JAKMIP2	0	genome.wustl.edu	37	5	147020340	147020340	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	147020340	147020340	T	G	SNP	JAKMIP2	ENST00000265272	human	ensembl	74_37	-1	known	missense	c.1328	p.D443A	1.000	NULL	NULL	-	no_errors	JAKMIP2	HGNC	ENSG00000176049				123	0	0	47	41	46.5909
LPCAT1	0	genome.wustl.edu	37	5	1474721	1474721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	1474721	1474721	C	T	SNP	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	missense	c.979	p.A327T	0.055	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				49	0	0	21	16	43.2432
HTR4	0	genome.wustl.edu	37	5	147902810	147902810	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	147902810	147902810	A	G	SNP	HTR4	ENST00000360693	human	ensembl	74_37	-1	known	silent	c.453	p.F151	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_5HT4_rcpt,prints_GPCR_Rhodpsn	-	no_errors	HTR4	HGNC	ENSG00000164270				86	0	0	51	23	31.0811
SH3TC2	0	genome.wustl.edu	37	5	148406848	148406848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	148406848	148406848	A	G	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	missense	c.2447	p.L816S	0.920	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247				208	0	0	91	46	33.5766
AFAP1L1	0	genome.wustl.edu	37	5	148679892	148679892	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	148679892	148679892	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	silent	c.204	p.F68	0.996	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				29	0	0	26	15	36.5854
AFAP1L1	0	genome.wustl.edu	37	5	148687128	148687128	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	148687128	148687128	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	silent	c.699	p.F233	0.997	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				78	0	0	39	15	27.7778
AFAP1L1	0	genome.wustl.edu	37	5	148699965	148699965	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	148699965	148699965	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	missense	c.1637	p.S546F	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				68	0	0	46	19	29.2308
PCYOX1L	0	genome.wustl.edu	37	5	148746955	148746955	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	148746955	148746955	C	T	SNP	PCYOX1L	ENST00000274569	human	ensembl	74_37	+1	known	silent	c.715	p.L239	1.000	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	pfam_Prenylcys_lyase,pirsf_Prenylcysteine_Oxase	-	no_errors	PCYOX1L	HGNC	ENSG00000145882				100	0	0	50	19	27.5362
PDE6A	0	genome.wustl.edu	37	5	149324052	149324052	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	149324052	149324052	A	C	SNP	PDE6A	ENST00000255266	human	ensembl	74_37	-1	known	missense	c.185	p.F62C	0.998	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6A	HGNC	ENSG00000132915				100	0	0	44	31	41.3333
CAMK2A	0	genome.wustl.edu	37	5	149607839	149607839	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	149607839	149607839	C	T	SNP	CAMK2A	ENST00000398376	human	ensembl	74_37	-1	known	missense	c.1153	p.D385N	1.000	pfam_Ca/CaM-dep_prot_kinase-assoc,superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808				54	0	0	20	12	37.5
DCTN4	0	genome.wustl.edu	37	5	150133162	150133162	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150133162	150133162	C	T	SNP	DCTN4	ENST00000446090	human	ensembl	74_37	-1	known	silent	c.264	p.T88	0.598	pfam_Dynactin_p62	pfam_Dynactin_p62	-	no_errors	DCTN4	HGNC	ENSG00000132912				50	0	0	38	17	30.9091
TNIP1	0	genome.wustl.edu	37	5	150418747	150418747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150418747	150418747	G	A	SNP	TNIP1	ENST00000315050	human	ensembl	74_37	-1	known	missense	c.1174	p.R392C	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	TNIP1	HGNC	ENSG00000145901				48	0	0	20	17	45.9459
SLC36A2	0	genome.wustl.edu	37	5	150704958	150704958	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150704958	150704958	G	T	SNP	SLC36A2	ENST00000335244	human	ensembl	74_37	-1	known	missense	c.899	p.S300Y	0.983	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335				87	0	0	38	12	24
SLC36A1	0	genome.wustl.edu	37	5	150838484	150838484	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150838484	150838484	G	T	SNP	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	missense	c.131	p.S44I	0.930	NULL	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643				118	0	0	42	20	32.2581
FAT2	0	genome.wustl.edu	37	5	150924751	150924751	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150924751	150924751	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.5937	p.E1979	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				90	0	0	47	27	36.4865
FAT2	0	genome.wustl.edu	37	5	150930303	150930303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150930303	150930303	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.4426	p.D1476N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				69	0	0	21	9	30
FAT2	0	genome.wustl.edu	37	5	150946848	150946848	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150946848	150946848	A	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.1645	p.S549P	0.895	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				140	0	0	66	38	36.5385
FAT2	0	genome.wustl.edu	37	5	150948206	150948206	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	150948206	150948206	C	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.287	p.R96I	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				414	1	0.240964	187	97	34.1549
GLRA1	0	genome.wustl.edu	37	5	151208496	151208496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	151208496	151208496	G	A	SNP	GLRA1	ENST00000455880	human	ensembl	74_37	-1	known	missense	c.1045	p.R349W	1.000	superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Glycine_rcpt_A1,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA1	HGNC	ENSG00000145888				307	0	0	181	100	35.5872
FAM114A2	0	genome.wustl.edu	37	5	153406049	153406049	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	153406049	153406049	C	A	SNP	FAM114A2	ENST00000351797	human	ensembl	74_37	-1	known	nonsense	c.823	p.E275*	1.000	NULL	pfam_DUF719	-	no_errors	FAM114A2	HGNC	ENSG00000055147				14	0	0	22	10	31.25
LARP1	0	genome.wustl.edu	37	5	154181870	154181870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	154181870	154181870	G	A	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.1789	p.E597K	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				120	1	0.826446	48	29	37.6623
LARP1	0	genome.wustl.edu	37	5	154182861	154182861	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	154182861	154182861	G	T	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.1890	p.E630D	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				105	0	0	54	30	35.7143
LARP1	0	genome.wustl.edu	37	5	154183768	154183768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	154183768	154183768	G	A	SNP	LARP1	ENST00000336314	human	ensembl	74_37	+1	known	missense	c.2216	p.R739Q	1.000	NULL	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,smart_DM15,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP1	HGNC	ENSG00000155506				169	0	0	110	12	9.83607
PLEKHG4B	0	genome.wustl.edu	37	5	156256	156256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	156256	156256	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	missense	c.1211	p.S404F	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				111	0	0	35	27	43.5484
FAM71B	0	genome.wustl.edu	37	5	156589906	156589906	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	156589906	156589906	G	A	SNP	FAM71B	ENST00000302938	human	ensembl	74_37	-1	known	missense	c.1370	p.A457V	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71B	HGNC	ENSG00000170613				211	0	0	109	65	37.3563
CYFIP2	0	genome.wustl.edu	37	5	156734839	156734839	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	156734839	156734839	G	T	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.866	p.R289I	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				17	0	0	7	9	56.25
CYFIP2	0	genome.wustl.edu	37	5	156747684	156747684	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	156747684	156747684	G	T	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.1545	p.K515N	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				55	0	0	34	18	34.6154
CYFIP2	0	genome.wustl.edu	37	5	156786115	156786115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	156786115	156786115	G	A	SNP	CYFIP2	ENST00000318218	human	ensembl	74_37	+1	known	missense	c.2851	p.A951T	1.000	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP2	HGNC	ENSG00000055163				146	0	0	90	47	34.3066
RNF145	0	genome.wustl.edu	37	5	158596042	158596042	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	158596042	158596042	C	T	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	silent	c.1050	p.T350	0.109	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				156	0	0	100	51	33.7748
FBXL7	0	genome.wustl.edu	37	5	15928442	15928442	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	15928442	15928442	G	A	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.571	p.V191I	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580				49	0	0	23	12	34.2857
PWWP2A	0	genome.wustl.edu	37	5	159507740	159507740	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	159507740	159507740	C	T	SNP	PWWP2A	ENST00000456329	human	ensembl	74_37	-1	known	silent	c.1587	p.T529	1.000	NULL	NULL	-	no_errors	PWWP2A	HGNC	ENSG00000170234				8	0	0	1	4	80
C1QTNF2	0	genome.wustl.edu	37	5	159781843	159781843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	159781843	159781843	C	T	SNP	C1QTNF2	ENST00000393975	human	ensembl	74_37	-1	known	missense	c.311	p.R104Q	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861				37	0	0	24	9	27.2727
ATP10B	0	genome.wustl.edu	37	5	159992649	159992649	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	159992649	159992649	G	C	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.4197	p.H1399Q	0.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				195	0	0	120	48	28.5714
ATP10B	0	genome.wustl.edu	37	5	159992842	159992842	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	159992842	159992842	T	C	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.4004	p.D1335G	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				212	0	0	111	54	32.7273
GABRA6	0	genome.wustl.edu	37	5	161128750	161128750	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161128750	161128750	A	G	SNP	GABRA6	ENST00000274545	human	ensembl	74_37	+1	known	missense	c.1333	p.T445A	1.000	prints_GABAAa_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa6_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA6	HGNC	ENSG00000145863				114	0	0	79	37	31.8966
GABRA1	0	genome.wustl.edu	37	5	161300284	161300284	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161300284	161300284	G	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.417	p.M139I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				87	0	0	60	28	31.8182
GABRA1	0	genome.wustl.edu	37	5	161309607	161309607	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161309607	161309607	G	A	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	silent	c.603	p.E201	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				78	0	0	48	27	36
GABRA1	0	genome.wustl.edu	37	5	161317999	161317999	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161317999	161317999	C	A	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.799	p.L267I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				109	0	0	54	24	30.7692
GABRA1	0	genome.wustl.edu	37	5	161324122	161324122	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161324122	161324122	G	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.1065	p.K355N	1.000	superfamily_Neurotrans-gated_channel_TM,prints_GABBAa1_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				139	0	0	94	36	27.6923
GABRA1	0	genome.wustl.edu	37	5	161324264	161324264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161324264	161324264	G	A	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	missense	c.1207	p.E403K	0.988	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				159	0	0	116	44	27.5
GABRG2	0	genome.wustl.edu	37	5	161495013	161495013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161495013	161495013	C	T	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.8	p.S3L	1.000	prints_GABBAg2_rcpt	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				67	0	0	38	22	36.6667
GABRG2	0	genome.wustl.edu	37	5	161530961	161530961	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161530961	161530961	G	T	SNP	GABRG2	ENST00000356592	human	ensembl	74_37	+1	known	missense	c.698	p.R233I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327				72	0	0	51	33	39.2857
PLEKHG4B	0	genome.wustl.edu	37	5	161926	161926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	161926	161926	C	T	SNP	PLEKHG4B	ENST00000283426	human	ensembl	74_37	+1	known	missense	c.1448	p.A483V	0.038	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4B	HGNC	ENSG00000153404				82	0	0	69	4	5.47945
HMMR	0	genome.wustl.edu	37	5	162900198	162900198	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	162900198	162900198	A	G	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.664	p.K222E	0.997	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				27	0	0	22	5	18.5185
HMMR	0	genome.wustl.edu	37	5	162900450	162900450	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	162900450	162900450	A	C	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.791	p.E264A	0.971	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				57	0	0	67	28	29.4737
HMMR	0	genome.wustl.edu	37	5	162902491	162902491	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	162902491	162902491	C	T	SNP	HMMR	ENST00000393915	human	ensembl	74_37	+1	known	missense	c.1081	p.L361F	0.980	NULL	NULL	-	no_errors	HMMR	HGNC	ENSG00000072571				57	0	0	45	16	26.2295
ZNF622	0	genome.wustl.edu	37	5	16465454	16465454	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	16465454	16465454	C	A	SNP	ZNF622	ENST00000308683	human	ensembl	74_37	-1	known	missense	c.321	p.E107D	0.126	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF622	HGNC	ENSG00000173545				162	0	0	92	36	28.125
MYO10	0	genome.wustl.edu	37	5	16671611	16671611	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	16671611	16671611	A	C	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.5350	p.F1784V	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				64	0	0	44	15	25.4237
TENM2	0	genome.wustl.edu	37	5	167551866	167551866	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	167551866	167551866	G	A	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	missense	c.2020	p.D674N	1.000	pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				39	0	0	13	10	43.4783
TENM2	0	genome.wustl.edu	37	5	167671461	167671461	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	167671461	167671461	C	T	SNP	TENM2	ENST00000518659	human	ensembl	74_37	+1	known	nonsense	c.5557	p.R1853*	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Quino_amine_DH_bsu,superfamily_ConA-like_lec_gl_sf,superfamily_Cytokine_IL1-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM2	HGNC	ENSG00000145934				52	0	0	23	12	34.2857
WWC1	0	genome.wustl.edu	37	5	167855774	167855774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	167855774	167855774	G	A	SNP	WWC1	ENST00000265293	human	ensembl	74_37	+1	known	missense	c.1982	p.R661Q	0.981	superfamily_C2_dom	pfam_WW_dom,superfamily_C2_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	WWC1	HGNC	ENSG00000113645				91	0	0	33	30	47.619
MYO10	0	genome.wustl.edu	37	5	16794857	16794857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	16794857	16794857	C	T	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.365	p.S122N	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				34	0	0	21	7	25
PANK3	0	genome.wustl.edu	37	5	167990936	167990936	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	167990936	167990936	T	G	SNP	PANK3	ENST00000239231	human	ensembl	74_37	-1	known	missense	c.770	p.D257A	1.000	pfam_Type_II_PanK,tigrfam_Type_II_PanK	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK3	HGNC	ENSG00000120137				207	0	0	131	73	35.7843
DOCK2	0	genome.wustl.edu	37	5	169141087	169141087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	169141087	169141087	G	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.1715	p.R572Q	1.000	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				114	0	0	54	27	33.3333
LCP2	0	genome.wustl.edu	37	5	169679511	169679511	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	169679511	169679511	G	T	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	nonsense	c.1250	p.S417*	0.985	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				10	0	0	6	6	50
NPM1	0	genome.wustl.edu	37	5	170818793	170818793	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	170818793	170818793	G	A	SNP	NPM1	ENST00000296930	human	ensembl	74_37	+1	known	silent	c.342	p.Q114	1.000	superfamily_Nucleoplasmin_core_dom	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM1	HGNC	ENSG00000181163				84	0	0	40	23	36.5079
FBXW11	0	genome.wustl.edu	37	5	171295779	171295779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	171295779	171295779	G	A	SNP	FBXW11	ENST00000265094	human	ensembl	74_37	-1	known	missense	c.1489	p.R497W	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803				67	0	0	42	27	39.1304
FBXW11	0	genome.wustl.edu	37	5	171299912	171299912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	171299912	171299912	C	T	SNP	FBXW11	ENST00000265094	human	ensembl	74_37	-1	known	missense	c.1241	p.R414H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803				87	0	0	53	32	37.6471
ERGIC1	0	genome.wustl.edu	37	5	172341770	172341770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	172341770	172341770	G	A	SNP	ERGIC1	ENST00000393784	human	ensembl	74_37	+1	known	missense	c.304	p.D102N	1.000	NULL	pfam_Erv_C	-	no_errors	ERGIC1	HGNC	ENSG00000113719				81	0	0	63	6	8.69565
RPL26L1	0	genome.wustl.edu	37	5	172396461	172396461	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	172396461	172396461	C	A	SNP	RPL26L1	ENST00000265100	human	ensembl	74_37	+1	known	missense	c.355	p.L119I	1.000	superfamily_Translation_prot_SH3-like,tigrfam_Ribosomal_L26/L24P_euk/arc	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	-	no_errors	RPL26L1	HGNC	ENSG00000037241				141	0	0	82	32	28.0702
CREBRF	0	genome.wustl.edu	37	5	172513516	172513516	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	172513516	172513516	G	T	SNP	CREBRF	ENST00000540014	human	ensembl	74_37	+1	known	nonsense	c.22	p.G8*	1.000	NULL	NULL	-	no_errors	CREBRF	HGNC	ENSG00000164463				131	0	0	98	42	30
BNIP1	0	genome.wustl.edu	37	5	172590728	172590728	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	172590728	172590728	T	G	SNP	BNIP1	ENST00000231668	human	ensembl	74_37	+1	known	missense	c.620	p.V207G	0.936	pfam_Sec20	pfam_Sec20	-	no_errors	BNIP1	HGNC	ENSG00000113734				58	0	0	43	13	23.2143
CDHR2	0	genome.wustl.edu	37	5	176003151	176003151	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	176003151	176003151	G	A	SNP	CDHR2	ENST00000261944	human	ensembl	74_37	+1	known	missense	c.1159	p.D387N	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR2	HGNC	ENSG00000074276				97	0	0	49	36	42.3529
HK3	0	genome.wustl.edu	37	5	176308305	176308305	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	176308305	176308305	C	T	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	silent	c.2625	p.P875	0.034	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883				202	0	0	70	30	30
NSD1	0	genome.wustl.edu	37	5	176636805	176636805	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	176636805	176636805	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.1405	p.D469Y	0.997	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				134	0	0	89	47	34.5588
NSD1	0	genome.wustl.edu	37	5	176671259	176671259	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	176671259	176671259	G	T	SNP	NSD1	ENST00000439151	human	ensembl	74_37	+1	known	missense	c.4366	p.D1456Y	0.919	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,smart_Znf_PHD,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger	-	no_errors	NSD1	HGNC	ENSG00000165671				36	0	0	22	12	35.2941
NHP2	0	genome.wustl.edu	37	5	177580513	177580513	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	177580513	177580513	A	C	SNP	NHP2	ENST00000274606	human	ensembl	74_37	-1	known	missense	c.209	p.F70C	1.000	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7Ae/L8/Nhp2,prints_H/ACA_rnp_Nhp2_euk	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45,prints_Ribosomal_L7Ae/L8/Nhp2,prints_H/ACA_rnp_Nhp2_euk	-	no_errors	NHP2	HGNC	ENSG00000145912				279	0	0	128	62	32.6316
COL23A1	0	genome.wustl.edu	37	5	177681965	177681965	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	177681965	177681965	G	T	SNP	COL23A1	ENST00000390654	human	ensembl	74_37	-1	known	silent	c.945	p.I315	1.000	NULL	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				316	0	0	164	77	31.9502
ZNF354A	0	genome.wustl.edu	37	5	178139758	178139758	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178139758	178139758	C	A	SNP	ZNF354A	ENST00000335815	human	ensembl	74_37	-1	known	missense	c.1121	p.R374I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131				120	1	0.826446	76	35	31.5315
ZNF354A	0	genome.wustl.edu	37	5	178152396	178152396	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178152396	178152396	A	G	SNP	ZNF354A	ENST00000335815	human	ensembl	74_37	-1	known	silent	c.237	p.G79	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354A	HGNC	ENSG00000169131				229	0	0	131	40	23.3918
AACSP1	0	genome.wustl.edu	37	5	178194260	178194260	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178194260	178194260	G	A	SNP	AACSP1	ENST00000503486	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AACSP1	HGNC	ENSG00000250420				39	0	0	12	5	29.4118
AACSP1	0	genome.wustl.edu	37	5	178202321	178202321	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178202321	178202321	G	A	SNP	AACSP1	ENST00000503486	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.805	-	-	-	no_errors	AACSP1	HGNC	ENSG00000250420				13	0	0	3	4	57.1429
ZNF354B	0	genome.wustl.edu	37	5	178309931	178309931	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178309931	178309931	A	C	SNP	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	missense	c.478	p.N160H	0.005	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				53	0	0	43	21	32.8125
ZNF454	0	genome.wustl.edu	37	5	178373364	178373364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178373364	178373364	C	T	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	missense	c.38	p.S13L	0.006	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187				123	0	0	69	37	34.9057
ZNF454	0	genome.wustl.edu	37	5	178392029	178392029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178392029	178392029	A	C	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	missense	c.624	p.K208N	0.966	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187				85	0	0	47	39	45.3488
ZNF454	0	genome.wustl.edu	37	5	178392784	178392784	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178392784	178392784	G	T	SNP	ZNF454	ENST00000320129	human	ensembl	74_37	+1	known	missense	c.1379	p.R460I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF454	HGNC	ENSG00000178187				160	0	0	104	45	30.2013
ZNF879	0	genome.wustl.edu	37	5	178460208	178460208	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178460208	178460208	G	T	SNP	ZNF879	ENST00000444149	human	ensembl	74_37	+1	known	missense	c.1259	p.R420I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF879	HGNC	ENSG00000234284				11	0	0	16	7	30.4348
ZNF879	0	genome.wustl.edu	37	5	178460260	178460260	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178460260	178460260	C	T	SNP	ZNF879	ENST00000444149	human	ensembl	74_37	+1	known	silent	c.1311	p.F437	0.097	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF879	HGNC	ENSG00000234284				11	0	0	10	5	33.3333
ZNF354C	0	genome.wustl.edu	37	5	178505734	178505734	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178505734	178505734	T	G	SNP	ZNF354C	ENST00000315475	human	ensembl	74_37	+1	known	missense	c.301	p.F101V	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932				74	0	0	50	31	38.2716
ZNF354C	0	genome.wustl.edu	37	5	178506881	178506881	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178506881	178506881	T	G	SNP	ZNF354C	ENST00000315475	human	ensembl	74_37	+1	known	nonsense	c.1448	p.L483*	0.348	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932				101	0	0	61	42	40.7767
ADAMTS2	0	genome.wustl.edu	37	5	178541025	178541025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178541025	178541025	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.3479	p.A1160V	0.442	prints_Pept_M12B_ADAM-TS2	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				204	0	0	86	50	36.7647
ADAMTS2	0	genome.wustl.edu	37	5	178557056	178557056	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178557056	178557056	C	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.2334	p.E778D	0.925	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				87	0	0	48	23	32.3944
ADAMTS2	0	genome.wustl.edu	37	5	178770784	178770784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	178770784	178770784	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	missense	c.518	p.S173N	1.000	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				27	0	0	11	7	38.8889
MAML1	0	genome.wustl.edu	37	5	179195995	179195995	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179195995	179195995	T	C	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	silent	c.1876	p.L626	0.040	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021				222	0	0	103	53	33.9744
MAML1	0	genome.wustl.edu	37	5	179221059	179221059	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179221059	179221059	C	T	SNP	MAML1	ENST00000503050	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAML1	HGNC	ENSG00000161021				81	0	0	39	15	27.7778
TBC1D9B	0	genome.wustl.edu	37	5	179302018	179302018	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179302018	179302018	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	silent	c.2070	p.C690	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				111	0	0	58	26	30.9524
RASGEF1C	0	genome.wustl.edu	37	5	179529139	179529139	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179529139	179529139	A	C	SNP	RASGEF1C	ENST00000361132	human	ensembl	74_37	-1	known	silent	c.1308	p.L436	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090				76	0	0	36	23	38.9831
GFPT2	0	genome.wustl.edu	37	5	179743815	179743815	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179743815	179743815	G	A	SNP	GFPT2	ENST00000253778	human	ensembl	74_37	-1	known	silent	c.1101	p.C367	1.000	pfam_SIS,tigrfam_GlmS_trans	pfam_SIS,pfam_GATase_dom,tigrfam_GlmS_trans	-	no_errors	GFPT2	HGNC	ENSG00000131459				56	0	0	37	23	38.3333
CNOT6	0	genome.wustl.edu	37	5	179994129	179994129	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	179994129	179994129	G	A	SNP	CNOT6	ENST00000261951	human	ensembl	74_37	+1	known	silent	c.759	p.E253	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6	HGNC	ENSG00000113300				105	0	0	66	37	35.9223
FLT4	0	genome.wustl.edu	37	5	180057603	180057603	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	180057603	180057603	C	A	SNP	FLT4	ENST00000261937	human	ensembl	74_37	-1	known	missense	c.352	p.A118S	1.000	smart_Ig_sub,prints_VEGFR3_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR3_rcpt	-	no_errors	FLT4	HGNC	ENSG00000037280				98	0	0	39	21	35
CDH18	0	genome.wustl.edu	37	5	19747052	19747052	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	19747052	19747052	C	A	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.522	p.M174I	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				123	0	0	59	29	32.9545
CDH12	0	genome.wustl.edu	37	5	21752079	21752079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	21752079	21752079	G	T	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.2152	p.H718N	0.452	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				131	1	0.757576	79	28	26.1682
CDH12	0	genome.wustl.edu	37	5	21975363	21975363	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	21975363	21975363	C	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.363	p.E121D	0.993	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				199	0	0	90	40	30.7692
PRDM9	0	genome.wustl.edu	37	5	23526399	23526399	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	23526399	23526399	A	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.1202	p.K401T	0.107	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				151	0	0	82	42	33.871
CDH10	0	genome.wustl.edu	37	5	24487619	24487619	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	24487619	24487619	G	T	SNP	CDH10	ENST00000502921	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CDH10	HGNC	ENSG00000040731				31	0	0	21	10	32.2581
CDH10	0	genome.wustl.edu	37	5	24487912	24487912	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	24487912	24487912	A	C	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.2227	p.S743A	0.988	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				196	0	0	125	49	28.1609
CDH10	0	genome.wustl.edu	37	5	24505233	24505233	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	24505233	24505233	C	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1381	p.A461T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				80	0	0	48	21	30.4348
CDH9	0	genome.wustl.edu	37	5	26881475	26881475	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	26881475	26881475	C	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.2140	p.D714Y	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				168	0	0	110	41	27.1523
CDH9	0	genome.wustl.edu	37	5	26881565	26881565	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	26881565	26881565	C	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	nonsense	c.2050	p.E684*	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				249	0	0	137	88	39.1111
CDH9	0	genome.wustl.edu	37	5	26890660	26890660	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	26890660	26890660	G	A	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1267	p.R423W	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				126	0	0	85	43	33.5938
CDH9	0	genome.wustl.edu	37	5	26902745	26902745	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	26902745	26902745	T	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1093	p.K365E	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				86	0	0	96	11	10.2804
CDH9	0	genome.wustl.edu	37	5	26988334	26988334	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	26988334	26988334	T	C	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.107	p.K36R	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				59	0	0	48	24	33.3333
CDH6	0	genome.wustl.edu	37	5	31313500	31313500	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	31313500	31313500	G	A	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	silent	c.1329	p.S443	0.599	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				218	0	0	120	67	35.8289
CDH6	0	genome.wustl.edu	37	5	31323161	31323161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	31323161	31323161	C	T	SNP	CDH6	ENST00000265071	human	ensembl	74_37	+1	known	missense	c.2119	p.R707C	0.047	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				76	0	0	52	20	27.7778
DROSHA	0	genome.wustl.edu	37	5	31508786	31508786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	31508786	31508786	C	T	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	missense	c.1529	p.R510H	1.000	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360				123	0	0	65	25	27.7778
DROSHA	0	genome.wustl.edu	37	5	31521241	31521241	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	31521241	31521241	C	T	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	silent	c.936	p.K312	1.000	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360				187	0	0	122	59	32.5967
PDZD2	0	genome.wustl.edu	37	5	31799489	31799489	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	31799489	31799489	A	G	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.134	p.Y45C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				219	0	0	126	47	27.1676
PDZD2	0	genome.wustl.edu	37	5	32087704	32087704	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32087704	32087704	T	G	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.4150	p.S1384A	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				67	0	0	36	6	14.2857
ZFR	0	genome.wustl.edu	37	5	32388677	32388677	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32388677	32388677	G	T	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.2246	p.S749Y	1.000	NULL	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				83	0	0	58	29	33.3333
NPR3	0	genome.wustl.edu	37	5	32712124	32712124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32712124	32712124	G	A	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.242	p.R81H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				63	0	0	26	10	27.7778
NPR3	0	genome.wustl.edu	37	5	32774841	32774841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32774841	32774841	G	A	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.1087	p.D363N	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				233	0	0	91	47	34.058
NPR3	0	genome.wustl.edu	37	5	32783106	32783106	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32783106	32783106	G	A	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	silent	c.1398	p.E466	1.000	NULL	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				9	0	0	6	10	62.5
ENSG00000181495	0	genome.wustl.edu	37	5	32789659	32789659	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	32789659	32789659	G	T	SNP	ENSG00000181495	ENST00000326958	human	ensembl	74_37	+1	novel	missense	c.152	p.R51I	0.000	NULL	NULL	-	no_errors	AC026703.1	Clone_based_ensembl_gene	ENSG00000181495				112	0	0	38	66	63.4615
TARS	0	genome.wustl.edu	37	5	33467669	33467669	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	33467669	33467669	T	G	SNP	TARS	ENST00000265112	human	ensembl	74_37	+1	known	silent	c.2028	p.V676	0.998	pfam_Anticodon-bd,superfamily_Anticodon-bd,tigrfam_Thr-tRNA-ligase_IIa	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-ligase_IIa	-	no_errors	TARS	HGNC	ENSG00000113407				56	0	0	37	18	32.7273
C1QTNF3	0	genome.wustl.edu	37	5	34033499	34033499	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	34033499	34033499	G	A	SNP	C1QTNF3	ENST00000382065	human	ensembl	74_37	-1	known	silent	c.480	p.G160	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196				129	0	0	83	61	42.3611
C1QTNF3	0	genome.wustl.edu	37	5	34043141	34043141	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	34043141	34043141	G	A	SNP	C1QTNF3	ENST00000382065	human	ensembl	74_37	-1	known	silent	c.90	p.S30	1.000	NULL	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF3	HGNC	ENSG00000082196				260	0	0	147	66	30.9859
RAI14	0	genome.wustl.edu	37	5	34807920	34807920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	34807920	34807920	G	A	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	missense	c.346	p.E116K	0.212	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				96	0	0	67	32	32.3232
TTC23L	0	genome.wustl.edu	37	5	34845772	34845772	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	34845772	34845772	A	G	SNP	TTC23L	ENST00000505624	human	ensembl	74_37	+1	known	silent	c.249	p.E83	0.041	NULL	NULL	-	no_errors	TTC23L	HGNC	ENSG00000205838				35	0	0	26	9	25.7143
RAD1	0	genome.wustl.edu	37	5	34913634	34913634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	34913634	34913634	C	T	SNP	RAD1	ENST00000341754	human	ensembl	74_37	-1	known	missense	c.248	p.R83Q	1.000	pfam_Rad1_Rec1_Rad17,prints_Cell_cycle_checkpoint_Rad1	pfam_Rad1_Rec1_Rad17,prints_Rad1_Rec1_Rad17,prints_Cell_cycle_checkpoint_Rad1	-	no_errors	RAD1	HGNC	ENSG00000113456				47	0	0	50	25	33.3333
AGXT2	0	genome.wustl.edu	37	5	35035348	35035348	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	35035348	35035348	T	C	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.560	p.N187S	0.774	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				120	0	0	110	19	14.7287
AGXT2	0	genome.wustl.edu	37	5	35039553	35039553	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	35039553	35039553	C	T	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.238	p.A80T	0.168	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				92	0	0	52	33	38.8235
SPEF2	0	genome.wustl.edu	37	5	35628563	35628563	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	35628563	35628563	T	C	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	silent	c.60	p.S20	1.000	pfam_DUF1042,superfamily_CH-domain,pfscan_CH-domain	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				96	0	0	58	22	27.5
IL7R	0	genome.wustl.edu	37	5	35873660	35873660	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	35873660	35873660	C	T	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	nonsense	c.616	p.R206*	0.995	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				85	0	0	59	23	28.0488
UGT3A1	0	genome.wustl.edu	37	5	35965926	35965926	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	35965926	35965926	C	A	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	missense	c.405	p.K135N	0.889	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626				81	0	0	40	25	38.4615
UGT3A2	0	genome.wustl.edu	37	5	36049086	36049086	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	36049086	36049086	T	G	SNP	UGT3A2	ENST00000282507	human	ensembl	74_37	-1	known	missense	c.748	p.N250H	0.898	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671				152	0	0	77	38	33.0435
SLC1A3	0	genome.wustl.edu	37	5	36608664	36608664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	36608664	36608664	C	T	SNP	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	missense	c.139	p.R47W	1.000	NULL	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215				253	0	0	136	65	32.3383
SLC1A3	0	genome.wustl.edu	37	5	36671167	36671167	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	36671167	36671167	T	C	SNP	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	missense	c.356	p.M119T	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215				73	0	0	47	25	34.7222
NIPBL	0	genome.wustl.edu	37	5	36971016	36971016	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	36971016	36971016	A	C	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	missense	c.649	p.N217H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				64	0	0	50	25	33.3333
C5orf42	0	genome.wustl.edu	37	5	37183640	37183640	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	37183640	37183640	T	G	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.4643	p.D1548A	1.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				42	0	0	44	15	25.4237
NUP155	0	genome.wustl.edu	37	5	37299063	37299063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	37299063	37299063	T	C	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.3700	p.T1234A	0.082	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569				66	0	0	32	18	36
WDR70	0	genome.wustl.edu	37	5	37727132	37727132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	37727132	37727132	C	T	SNP	WDR70	ENST00000265107	human	ensembl	74_37	+1	known	missense	c.1862	p.S621F	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR70	HGNC	ENSG00000082068				122	0	0	78	31	28.4404
LIFR	0	genome.wustl.edu	37	5	38481831	38481831	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38481831	38481831	T	G	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.3160	p.I1054L	0.004	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				196	0	0	111	60	35.0877
LIFR	0	genome.wustl.edu	37	5	38506127	38506127	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38506127	38506127	C	T	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.1171	p.E391K	0.987	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				62	0	0	75	36	32.4324
LIFR	0	genome.wustl.edu	37	5	38523553	38523553	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38523553	38523553	G	T	SNP	LIFR	ENST00000263409	human	ensembl	74_37	-1	known	missense	c.529	p.L177I	0.270	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	LIFR	HGNC	ENSG00000113594				94	0	0	118	7	5.6
OSMR	0	genome.wustl.edu	37	5	38884119	38884119	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38884119	38884119	G	A	SNP	OSMR	ENST00000274276	human	ensembl	74_37	+1	known	silent	c.609	p.V203	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623				235	0	0	135	70	34.1463
OSMR	0	genome.wustl.edu	37	5	38924691	38924691	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38924691	38924691	C	A	SNP	OSMR	ENST00000274276	human	ensembl	74_37	+1	known	missense	c.2038	p.L680I	0.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623				149	0	0	75	40	34.7826
RICTOR	0	genome.wustl.edu	37	5	38945754	38945754	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	38945754	38945754	T	G	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	missense	c.4544	p.E1515A	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				68	0	0	62	24	27.907
FYB	0	genome.wustl.edu	37	5	39202791	39202791	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	39202791	39202791	C	A	SNP	FYB	ENST00000540520	human	ensembl	74_37	-1	known	missense	c.302	p.R101I	0.982	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074				51	0	0	30	12	28.5714
C9	0	genome.wustl.edu	37	5	39311447	39311447	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	39311447	39311447	A	G	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	silent	c.903	p.I301	0.864	pfam_MACPF,smart_MACPF	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				74	0	0	42	25	37.3134
C9	0	genome.wustl.edu	37	5	39342196	39342196	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	39342196	39342196	T	G	SNP	C9	ENST00000263408	human	ensembl	74_37	-1	known	missense	c.180	p.Q60H	0.992	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	C9	HGNC	ENSG00000113600				93	0	0	53	22	29.3333
DAB2	0	genome.wustl.edu	37	5	39376141	39376141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	39376141	39376141	C	A	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.2205	p.E735D	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				97	0	0	72	35	32.7103
DAB2	0	genome.wustl.edu	37	5	39382876	39382876	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	39382876	39382876	C	T	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	silent	c.1185	p.P395	0.999	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				160	0	0	61	30	32.967
PRKAA1	0	genome.wustl.edu	37	5	40767575	40767575	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	40767575	40767575	C	A	SNP	PRKAA1	ENST00000354209	human	ensembl	74_37	-1	known	missense	c.859	p.D287Y	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356				73	0	0	36	26	41.9355
SNORD72	0	genome.wustl.edu	37	5	40832758	40832758	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	40832758	40832758	C	T	SNP	SNORD72	ENST00000390994	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.577	-	-	-	no_errors	SNORD72	HGNC	ENSG00000212296				121	0	0	76	31	28.972
CARD6	0	genome.wustl.edu	37	5	40852710	40852710	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	40852710	40852710	G	T	SNP	CARD6	ENST00000254691	human	ensembl	74_37	+1	known	missense	c.1276	p.D426Y	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357				76	0	0	53	8	13.1148
CARD6	0	genome.wustl.edu	37	5	40853422	40853422	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	40853422	40853422	A	G	SNP	CARD6	ENST00000254691	human	ensembl	74_37	+1	known	missense	c.1988	p.N663S	0.834	NULL	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357				250	0	0	122	75	38.0711
MROH2B	0	genome.wustl.edu	37	5	40998171	40998171	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	40998171	40998171	T	C	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.4741	p.T1581A	0.881	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				236	0	0	131	67	33.8384
MROH2B	0	genome.wustl.edu	37	5	41058242	41058242	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	41058242	41058242	G	A	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.679	p.R227C	0.171	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495				45	0	0	33	18	35.2941
C6	0	genome.wustl.edu	37	5	41181522	41181522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	41181522	41181522	C	T	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.866	p.R289K	0.000	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537				96	0	0	64	34	34.6939
PLCXD3	0	genome.wustl.edu	37	5	41382433	41382433	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	41382433	41382433	G	A	SNP	PLCXD3	ENST00000328457	human	ensembl	74_37	-1	known	missense	c.307	p.P103S	1.000	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD3	HGNC	ENSG00000182836				112	0	0	57	35	38.0435
GHR	0	genome.wustl.edu	37	5	42719381	42719381	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	42719381	42719381	C	T	SNP	GHR	ENST00000230882	human	ensembl	74_37	+1	known	missense	c.1772	p.P591L	1.000	NULL	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964				75	0	0	38	18	32.1429
C5orf28	0	genome.wustl.edu	37	5	43446338	43446338	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	43446338	43446338	G	T	SNP	C5orf28	ENST00000397080	human	ensembl	74_37	-1	known	missense	c.634	p.R212S	0.995	NULL	NULL	-	no_errors	C5orf28	HGNC	ENSG00000151881				83	0	0	79	7	8.13953
C5orf34	0	genome.wustl.edu	37	5	43490760	43490760	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	43490760	43490760	G	A	SNP	C5orf34	ENST00000306862	human	ensembl	74_37	-1	known	missense	c.1652	p.S551L	0.006	NULL	NULL	-	no_errors	C5orf34	HGNC	ENSG00000172244				69	0	0	44	19	30.1587
NNT	0	genome.wustl.edu	37	5	43613147	43613147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	43613147	43613147	G	A	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	missense	c.289	p.E97K	1.000	pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992				194	0	0	115	47	29.0123
MRPS30	0	genome.wustl.edu	37	5	44811250	44811250	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	44811250	44811250	C	T	SNP	MRPS30	ENST00000507110	human	ensembl	74_37	+1	known	silent	c.741	p.L247	0.916	pfam_Ribosomal_L37/S30	pfam_Ribosomal_L37/S30	-	no_errors	MRPS30	HGNC	ENSG00000112996				120	0	0	85	39	31.4516
PARP8	0	genome.wustl.edu	37	5	50117077	50117077	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	50117077	50117077	T	C	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	missense	c.1699	p.S567P	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP8	HGNC	ENSG00000151883				104	0	0	60	41	40.5941
ADAMTS16	0	genome.wustl.edu	37	5	5186365	5186365	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	5186365	5186365	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	splice_site	c.963+1	e5+1	1.000	-	-	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				41	0	0	31	3	8.82353
ITGA1	0	genome.wustl.edu	37	5	52216277	52216277	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	52216277	52216277	T	G	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	silent	c.2271	p.T757	0.482	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				53	0	0	40	5	11.1111
ADAMTS16	0	genome.wustl.edu	37	5	5239839	5239839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	5239839	5239839	G	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2324	p.R775H	0.537	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				179	0	0	91	50	35.461
FST	0	genome.wustl.edu	37	5	52779982	52779982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	52779982	52779982	C	T	SNP	FST	ENST00000256759	human	ensembl	74_37	+1	known	missense	c.580	p.R194W	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	FST	HGNC	ENSG00000134363				135	0	0	70	33	32.0388
ESM1	0	genome.wustl.edu	37	5	54275116	54275116	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	54275116	54275116	A	G	SNP	ESM1	ENST00000598310	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ESM1	HGNC	ENSG00000164283				86	0	0	44	28	38.8889
GZMA	0	genome.wustl.edu	37	5	54404084	54404084	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	54404084	54404084	C	T	SNP	GZMA	ENST00000274306	human	ensembl	74_37	+1	known	silent	c.489	p.S163	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMA	HGNC	ENSG00000145649				60	0	0	38	24	38.7097
KIAA0947	0	genome.wustl.edu	37	5	5460963	5460963	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	5460963	5460963	C	T	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	nonsense	c.1516	p.R506*	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				112	0	0	66	41	38.3178
KIAA0947	0	genome.wustl.edu	37	5	5461150	5461150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	5461150	5461150	G	A	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.1703	p.R568Q	0.000	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				222	0	0	122	72	37.1134
KIAA0947	0	genome.wustl.edu	37	5	5461831	5461831	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	5461831	5461831	A	G	SNP	KIAA0947	ENST00000296564	human	ensembl	74_37	+1	known	missense	c.2384	p.D795G	0.448	NULL	superfamily_Vitellinogen_superhlx	-	no_errors	KIAA0947	HGNC	ENSG00000164151				44	0	0	16	11	40.7407
PPAP2A	0	genome.wustl.edu	37	5	54721131	54721131	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	54721131	54721131	C	A	SNP	PPAP2A	ENST00000264775	human	ensembl	74_37	-1	known	missense	c.761	p.R254I	0.095	superfamily_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2A	HGNC	ENSG00000067113				83	0	0	45	26	36.6197
SLC38A9	0	genome.wustl.edu	37	5	54993700	54993700	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	54993700	54993700	A	C	SNP	SLC38A9	ENST00000318672	human	ensembl	74_37	-1	known	missense	c.87	p.F29L	0.998	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058				90	0	0	62	16	20.5128
DDX4	0	genome.wustl.edu	37	5	55059080	55059080	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	55059080	55059080	G	T	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	missense	c.283	p.G95C	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670				72	0	0	46	28	37.8378
DDX4	0	genome.wustl.edu	37	5	55082355	55082355	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	55082355	55082355	G	T	SNP	DDX4	ENST00000505374	human	ensembl	74_37	+1	known	nonsense	c.874	p.E292*	1.000	superfamily_P-loop_NTPase,pfscan_RNA_helicase_DEAD_Q_motif	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX4	HGNC	ENSG00000152670				81	0	0	43	29	40.2778
IL31RA	0	genome.wustl.edu	37	5	55164656	55164656	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	55164656	55164656	C	A	SNP	IL31RA	ENST00000447346	human	ensembl	74_37	+1	known	nonsense	c.192	p.Y64*	0.672	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509				102	0	0	82	43	34.4
IL31RA	0	genome.wustl.edu	37	5	55212583	55212583	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	55212583	55212583	T	G	SNP	IL31RA	ENST00000447346	human	ensembl	74_37	+1	known	missense	c.1930	p.F644V	1.000	NULL	pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL31RA	HGNC	ENSG00000164509				78	0	0	54	21	28
MAP3K1	0	genome.wustl.edu	37	5	56181765	56181765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	56181765	56181765	C	T	SNP	MAP3K1	ENST00000399503	human	ensembl	74_37	+1	novel	missense	c.3989	p.S1330L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015				51	0	0	57	19	25
GPBP1	0	genome.wustl.edu	37	5	56526703	56526703	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	56526703	56526703	A	C	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	missense	c.94	p.N32H	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				113	0	0	54	32	37.2093
GPBP1	0	genome.wustl.edu	37	5	56546838	56546838	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	56546838	56546838	A	C	SNP	GPBP1	ENST00000424459	human	ensembl	74_37	+1	known	missense	c.1090	p.N364H	1.000	NULL	NULL	-	no_errors	GPBP1	HGNC	ENSG00000062194				92	0	0	51	32	38.5542
PLK2	0	genome.wustl.edu	37	5	57752802	57752802	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	57752802	57752802	T	G	SNP	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	missense	c.1126	p.K376Q	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				85	0	0	56	41	42.268
PLK2	0	genome.wustl.edu	37	5	57754894	57754894	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	57754894	57754894	A	G	SNP	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	missense	c.296	p.M99T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				104	0	0	58	26	30.9524
PDE4D	0	genome.wustl.edu	37	5	58287668	58287668	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	58287668	58287668	G	A	SNP	PDE4D	ENST00000340635	human	ensembl	74_37	-1	known	silent	c.1179	p.V393	0.609	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448				19	0	0	14	7	33.3333
PDE4D	0	genome.wustl.edu	37	5	58652665	58652665	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	58652665	58652665	A	T	SNP	PDE4D	ENST00000405755	human	ensembl	74_37	-1	known	missense	c.8	p.F3Y	1.000	NULL	pfam_PDEase_catalytic_dom,prints_PDEase	-	no_errors	PDE4D	HGNC	ENSG00000113448				38	0	0	20	10	33.3333
DEPDC1B	0	genome.wustl.edu	37	5	59901524	59901524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	59901524	59901524	C	T	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	missense	c.1058	p.R353Q	0.999	superfamily_Rho_GTPase_activation_prot,pfscan_RhoGAP_dom	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				155	0	0	102	40	28.169
DEPDC1B	0	genome.wustl.edu	37	5	59941376	59941376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	59941376	59941376	C	T	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	missense	c.521	p.R174H	0.998	NULL	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				77	0	0	47	35	42.6829
DEPDC1B	0	genome.wustl.edu	37	5	59982961	59982961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	59982961	59982961	C	T	SNP	DEPDC1B	ENST00000265036	human	ensembl	74_37	-1	known	missense	c.142	p.E48K	0.335	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DEP_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom,pfscan_RhoGAP_dom	-	no_errors	DEPDC1B	HGNC	ENSG00000035499				154	0	0	83	44	34.6457
ELOVL7	0	genome.wustl.edu	37	5	60067919	60067919	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	60067919	60067919	A	G	SNP	ELOVL7	ENST00000425382	human	ensembl	74_37	-1	known	silent	c.66	p.D22	1.000	NULL	pfam_GNS1_SUR4	-	no_errors	ELOVL7	HGNC	ENSG00000164181				21	0	0	17	6	26.087
KIF2A	0	genome.wustl.edu	37	5	61643984	61643984	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	61643984	61643984	A	C	SNP	KIF2A	ENST00000407818	human	ensembl	74_37	+1	known	missense	c.269	p.K90T	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796				122	0	0	90	37	29.1339
KIF2A	0	genome.wustl.edu	37	5	61669521	61669521	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	61669521	61669521	G	T	SNP	KIF2A	ENST00000407818	human	ensembl	74_37	+1	known	nonsense	c.1768	p.E590*	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796				44	0	0	23	9	28.125
RNF180	0	genome.wustl.edu	37	5	63509662	63509662	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	63509662	63509662	G	A	SNP	RNF180	ENST00000389100	human	ensembl	74_37	+1	known	missense	c.509	p.R170Q	0.975	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF180	HGNC	ENSG00000164197				130	0	0	81	37	31.3559
ADAMTS6	0	genome.wustl.edu	37	5	64520865	64520865	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	64520865	64520865	A	C	SNP	ADAMTS6	ENST00000381055	human	ensembl	74_37	-1	known	missense	c.2077	p.C693G	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192				80	0	0	57	29	33.7209
TRIM23	0	genome.wustl.edu	37	5	64892294	64892294	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	64892294	64892294	T	G	SNP	TRIM23	ENST00000231524	human	ensembl	74_37	-1	known	missense	c.1374	p.K458N	1.000	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Gtr1_RagA,pfam_Gprotein_alpha_su,pfam_Znf_B-box,superfamily_P-loop_NTPase,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Rab_type,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_Znf_C2H2,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	TRIM23	HGNC	ENSG00000113595				73	0	0	51	17	25
NSUN2	0	genome.wustl.edu	37	5	6623341	6623341	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	6623341	6623341	G	A	SNP	NSUN2	ENST00000264670	human	ensembl	74_37	-1	known	missense	c.523	p.R175W	0.612	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT,prints_RCMT_NCL1	-	no_errors	NSUN2	HGNC	ENSG00000037474				92	0	0	50	29	36.7089
MAST4	0	genome.wustl.edu	37	5	66438048	66438048	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	66438048	66438048	A	G	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.2609	p.D870G	1.000	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				100	0	0	69	32	31.6832
MAST4	0	genome.wustl.edu	37	5	66461024	66461024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	66461024	66461024	C	T	SNP	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	missense	c.6026	p.A2009V	0.000	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				20	0	0	16	4	20
CCNB1	0	genome.wustl.edu	37	5	68470866	68470866	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	68470866	68470866	C	G	SNP	CCNB1	ENST00000256442	human	ensembl	74_37	+1	known	missense	c.868	p.L290V	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNB1	HGNC	ENSG00000134057				226	0	0	111	53	32.3171
CCNB1	0	genome.wustl.edu	37	5	68470918	68470918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	68470918	68470918	G	A	SNP	CCNB1	ENST00000256442	human	ensembl	74_37	+1	known	missense	c.920	p.R307Q	0.994	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCNB1	HGNC	ENSG00000134057				187	0	0	95	52	35.3741
RAD17	0	genome.wustl.edu	37	5	68681898	68681898	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	68681898	68681898	C	A	SNP	RAD17	ENST00000380774	human	ensembl	74_37	+1	known	missense	c.707	p.S236Y	0.915	superfamily_P-loop_NTPase,tigrfam_Checkpoint_prot_Rad24_fun/met	superfamily_P-loop_NTPase,tigrfam_Checkpoint_prot_Rad24_fun/met	-	no_errors	RAD17	HGNC	ENSG00000152942				53	0	0	60	23	27.7108
NAIP	0	genome.wustl.edu	37	5	70308498	70308498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70308498	70308498	G	A	SNP	NAIP	ENST00000194097	human	ensembl	74_37	-1	known	missense	c.245	p.A82V	0.964	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,superfamily_P-loop_NTPase,smart_BIR,smart_AAA+_ATPase,pfscan_NACHT_NTPase,pfscan_BIR	-	no_errors	NAIP	HGNC	ENSG00000249437				156	0	0	90	32	26.2295
NAIP	0	genome.wustl.edu	37	5	70308571	70308571	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70308571	70308571	G	A	SNP	NAIP	ENST00000194097	human	ensembl	74_37	-1	known	missense	c.172	p.R58C	1.000	smart_BIR	pfam_BIR,superfamily_P-loop_NTPase,smart_BIR,smart_AAA+_ATPase,pfscan_NACHT_NTPase,pfscan_BIR	-	no_errors	NAIP	HGNC	ENSG00000249437				273	0	0	150	67	30.8756
BDP1	0	genome.wustl.edu	37	5	70786822	70786822	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70786822	70786822	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.1504	p.A502T	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				78	0	0	52	21	28.7671
BDP1	0	genome.wustl.edu	37	5	70791146	70791146	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70791146	70791146	C	T	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.1710	p.F570	0.011	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				103	0	0	64	29	31.1828
BDP1	0	genome.wustl.edu	37	5	70805836	70805836	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70805836	70805836	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.2917	p.V973M	0.000	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				134	0	0	102	51	33.3333
BDP1	0	genome.wustl.edu	37	5	70810930	70810930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70810930	70810930	G	A	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.4630	p.D1544N	0.004	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				52	0	0	38	16	29.6296
BDP1	0	genome.wustl.edu	37	5	70818628	70818628	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70818628	70818628	G	T	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.5239	p.D1747Y	0.994	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				66	0	0	44	28	38.8889
BDP1	0	genome.wustl.edu	37	5	70855831	70855831	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70855831	70855831	T	C	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	silent	c.7263	p.D2421	0.001	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				123	0	0	71	44	38.2609
BDP1	0	genome.wustl.edu	37	5	70858262	70858262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70858262	70858262	A	G	SNP	BDP1	ENST00000358731	human	ensembl	74_37	+1	known	missense	c.7658	p.E2553G	0.943	NULL	superfamily_Homeodomain-like,smart_SANT/Myb	-	no_errors	BDP1	HGNC	ENSG00000145734				88	0	0	96	10	9.43396
MCCC2	0	genome.wustl.edu	37	5	70930886	70930886	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70930886	70930886	C	A	SNP	MCCC2	ENST00000505787	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MCCC2	HGNC	ENSG00000131844				86	0	0	51	27	34.6154
MCCC2	0	genome.wustl.edu	37	5	70948577	70948577	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	70948577	70948577	G	A	SNP	MCCC2	ENST00000340941	human	ensembl	74_37	+1	known	missense	c.1570	p.A524T	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	MCCC2	HGNC	ENSG00000131844				54	0	0	35	15	30
MAP1B	0	genome.wustl.edu	37	5	71494696	71494696	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	71494696	71494696	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.5514	p.F1838	0.542	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				117	0	0	67	30	30.9278
MRPS27	0	genome.wustl.edu	37	5	71524145	71524145	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	71524145	71524145	T	G	SNP	MRPS27	ENST00000513900	human	ensembl	74_37	-1	known	missense	c.684	p.K228N	0.999	pfam_Ribosomal_S27_mit	pfam_Ribosomal_S27_mit	-	no_errors	MRPS27	HGNC	ENSG00000113048				98	0	0	75	24	24.2424
ZNF366	0	genome.wustl.edu	37	5	71739902	71739902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	71739902	71739902	C	T	SNP	ZNF366	ENST00000318442	human	ensembl	74_37	-1	known	missense	c.1916	p.S639N	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175				359	0	0	194	69	26.2357
TNPO1	0	genome.wustl.edu	37	5	72201159	72201159	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	72201159	72201159	C	T	SNP	TNPO1	ENST00000337273	human	ensembl	74_37	+1	known	silent	c.2619	p.G873	0.914	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	TNPO1	HGNC	ENSG00000083312				155	0	0	85	39	31.4516
FCHO2	0	genome.wustl.edu	37	5	72285288	72285288	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	72285288	72285288	A	C	SNP	FCHO2	ENST00000341845	human	ensembl	74_37	+1	known	missense	c.160	p.T54P	1.000	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	pfam_Muniscin_C-term_mu_dom,pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	FCHO2	HGNC	ENSG00000157107				11	0	0	11	5	31.25
BTF3	0	genome.wustl.edu	37	5	72798357	72798357	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	72798357	72798357	A	G	SNP	BTF3	ENST00000380591	human	ensembl	74_37	+1	known	silent	c.246	p.T82	0.992	pfscan_Nas_poly-pep-assoc_cplx_dom	pfam_Nas_poly-pep-assoc_cplx_dom,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	BTF3	HGNC	ENSG00000145741				43	0	0	61	7	10.2941
BTF3	0	genome.wustl.edu	37	5	72801174	72801174	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	72801174	72801174	C	T	SNP	BTF3	ENST00000514505	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BTF3	HGNC	ENSG00000145741				14	0	0	12	7	36.8421
ARHGEF28	0	genome.wustl.edu	37	5	73153952	73153952	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	73153952	73153952	G	A	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	missense	c.1955	p.R652Q	1.000	pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944				171	1	0.581395	119	53	30.814
ARHGEF28	0	genome.wustl.edu	37	5	73207201	73207201	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	73207201	73207201	T	G	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	missense	c.4749	p.N1583K	0.063	NULL	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944				50	0	0	36	14	28
GFM2	0	genome.wustl.edu	37	5	74047274	74047274	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74047274	74047274	G	A	SNP	GFM2	ENST00000296805	human	ensembl	74_37	-1	known	nonsense	c.349	p.R117*	0.999	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_EFG_III-V,superfamily_Ribosomal_S5_D2-typ_fold,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM2	HGNC	ENSG00000164347				198	0	0	122	64	34.4086
NSA2	0	genome.wustl.edu	37	5	74066522	74066522	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74066522	74066522	C	T	SNP	NSA2	ENST00000296802	human	ensembl	74_37	+1	known	nonsense	c.409	p.R137*	1.000	pfam_Ribosomal_S8e/biogenesis_NSA2	pfam_Ribosomal_S8e/biogenesis_NSA2	-	no_errors	NSA2	HGNC	ENSG00000164346				80	0	0	63	30	32.2581
GCNT4	0	genome.wustl.edu	37	5	74324701	74324701	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74324701	74324701	G	A	SNP	GCNT4	ENST00000322348	human	ensembl	74_37	-1	known	nonsense	c.1162	p.R388*	1.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT4	HGNC	ENSG00000176928				86	0	0	57	50	46.729
HMGCR	0	genome.wustl.edu	37	5	74645970	74645970	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74645970	74645970	A	C	SNP	HMGCR	ENST00000287936	human	ensembl	74_37	+1	known	missense	c.660	p.L220F	0.995	pfam_Patched,tigrfam_HMG_CoA_Rdtase_metazoan	pfam_HMG_CoA_Rdtase,pfam_Patched,superfamily_HMG_CoA_Rdtase_sub-bd,superfamily_HMG_CoA_Rdtase_NAD(P)-bd,pfscan_SSD,pfscan_HMG_CoA_Rdtase,prints_HMG_CoA_Rdtase,tigrfam_HMG_CoA_Rdtase_metazoan,tigrfam_HMG_CoA_Rdtase_eu_arc	-	no_errors	HMGCR	HGNC	ENSG00000113161				90	0	0	54	22	28.9474
POLK	0	genome.wustl.edu	37	5	74869615	74869615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74869615	74869615	G	A	SNP	POLK	ENST00000241436	human	ensembl	74_37	+1	known	missense	c.461	p.G154E	1.000	pfam_DNA_repair_prot_UmuC-like,pfscan_DNA_repair_prot_UmuC-like_N	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				110	0	0	78	42	35
POLK	0	genome.wustl.edu	37	5	74892287	74892287	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	74892287	74892287	A	G	SNP	POLK	ENST00000241436	human	ensembl	74_37	+1	known	missense	c.1769	p.K590R	0.002	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_PolY_HhH_motif,superfamily_DNA_pol_Y-fam_little_finger,smart_Znf_Rad18_put,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLK	HGNC	ENSG00000122008				111	0	0	92	44	32.3529
SV2C	0	genome.wustl.edu	37	5	75427987	75427987	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	75427987	75427987	T	C	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.412	p.Y138H	1.000	superfamily_MFS_dom_general_subst_transpt,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012				158	0	0	89	38	29.9213
F2RL2	0	genome.wustl.edu	37	5	75913486	75913486	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	75913486	75913486	A	C	SNP	F2RL2	ENST00000296641	human	ensembl	74_37	-1	known	missense	c.1046	p.L349R	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Prot_act_rcpt_3,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2RL2	HGNC	ENSG00000164220				71	0	0	59	28	32.1839
IQGAP2	0	genome.wustl.edu	37	5	75927780	75927780	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	75927780	75927780	A	G	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	missense	c.1709	p.D570G	0.001	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				95	0	0	61	31	33.6957
F2RL1	0	genome.wustl.edu	37	5	76129240	76129240	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	76129240	76129240	C	T	SNP	F2RL1	ENST00000296677	human	ensembl	74_37	+1	known	nonsense	c.808	p.R270*	0.166	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_Pro_rcpt_2,prints_Protea_act_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	F2RL1	HGNC	ENSG00000164251				226	0	0	101	59	36.875
AGGF1	0	genome.wustl.edu	37	5	76344002	76344002	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	76344002	76344002	G	A	SNP	AGGF1	ENST00000312916	human	ensembl	74_37	+1	known	nonsense	c.1218	p.W406*	1.000	superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_G_patch_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_G_patch_dom,pfscan_FHA_dom,pfscan_G_patch_dom	-	no_errors	AGGF1	HGNC	ENSG00000164252				132	0	0	102	35	25.5474
PDE8B	0	genome.wustl.edu	37	5	76607841	76607841	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	76607841	76607841	G	A	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	missense	c.362	p.R121H	0.985	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231				172	0	0	88	53	37.5887
AP3B1	0	genome.wustl.edu	37	5	77409712	77409712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	77409712	77409712	C	T	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.2113	p.E705K	0.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				80	0	0	39	15	27.7778
AP3B1	0	genome.wustl.edu	37	5	77423858	77423858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	77423858	77423858	T	G	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.1964	p.E655A	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				105	0	0	100	8	7.40741
SCAMP1	0	genome.wustl.edu	37	5	77717663	77717663	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	77717663	77717663	T	C	SNP	SCAMP1	ENST00000538629	human	ensembl	74_37	+1	known	silent	c.511	p.L171	0.992	pfam_SCAMP	pfam_SCAMP	-	no_errors	SCAMP1	HGNC	ENSG00000085365				156	0	0	161	16	9.03955
ADCY2	0	genome.wustl.edu	37	5	7789775	7789775	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	7789775	7789775	A	G	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	silent	c.2490	p.L830	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				115	0	0	66	42	38.8889
JMY	0	genome.wustl.edu	37	5	78608246	78608246	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	78608246	78608246	T	C	SNP	JMY	ENST00000396137	human	ensembl	74_37	+1	known	silent	c.1989	p.D663	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				69	0	0	64	31	32.6316
JMY	0	genome.wustl.edu	37	5	78608266	78608266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	78608266	78608266	C	T	SNP	JMY	ENST00000396137	human	ensembl	74_37	+1	known	missense	c.2009	p.A670V	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				71	0	0	67	34	33.6634
HOMER1	0	genome.wustl.edu	37	5	78734856	78734856	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	78734856	78734856	C	T	SNP	HOMER1	ENST00000334082	human	ensembl	74_37	-1	known	silent	c.504	p.Q168	1.000	NULL	pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	HOMER1	HGNC	ENSG00000152413				140	0	0	93	29	23.7705
PAPD4	0	genome.wustl.edu	37	5	78975427	78975427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	78975427	78975427	C	T	SNP	PAPD4	ENST00000296783	human	ensembl	74_37	+1	known	missense	c.1234	p.R412C	1.000	pfam_PAP_assoc	pfam_PAP_assoc	-	no_errors	PAPD4	HGNC	ENSG00000164329				59	0	0	45	27	37.5
CMYA5	0	genome.wustl.edu	37	5	79026867	79026867	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79026867	79026867	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.2279	p.E760A	0.005	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				108	0	0	70	40	36.3636
CMYA5	0	genome.wustl.edu	37	5	79028077	79028077	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79028077	79028077	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.3489	p.E1163D	0.073	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				57	0	0	36	23	38.9831
CMYA5	0	genome.wustl.edu	37	5	79028508	79028508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79028508	79028508	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.3920	p.S1307F	0.002	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				26	0	0	23	6	20.6897
CMYA5	0	genome.wustl.edu	37	5	79028992	79028992	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79028992	79028992	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.4404	p.V1468	0.017	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				92	0	0	71	45	38.7931
CMYA5	0	genome.wustl.edu	37	5	79031392	79031392	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79031392	79031392	T	G	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.6804	p.I2268M	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				118	0	0	97	44	31.2057
CMYA5	0	genome.wustl.edu	37	5	79031470	79031470	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79031470	79031470	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.6882	p.I2294	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				126	0	0	88	49	35.7664
CMYA5	0	genome.wustl.edu	37	5	79032569	79032569	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79032569	79032569	A	C	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.7981	p.K2661Q	0.006	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				64	0	0	39	16	29.0909
THBS4	0	genome.wustl.edu	37	5	79378945	79378945	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79378945	79378945	T	G	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	missense	c.2867	p.F956C	0.961	NULL	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				135	0	0	67	43	39.0909
ZFYVE16	0	genome.wustl.edu	37	5	79732754	79732754	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79732754	79732754	A	G	SNP	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	missense	c.250	p.T84A	0.000	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				102	0	0	64	37	36.6337
ZFYVE16	0	genome.wustl.edu	37	5	79733028	79733028	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79733028	79733028	T	C	SNP	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	missense	c.524	p.V175A	0.000	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				91	0	0	61	35	36.4583
ZFYVE16	0	genome.wustl.edu	37	5	79746389	79746389	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79746389	79746389	T	C	SNP	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	silent	c.3366	p.Y1122	1.000	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				161	0	0	105	54	33.9623
ZFYVE16	0	genome.wustl.edu	37	5	79752310	79752310	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	79752310	79752310	A	C	SNP	ZFYVE16	ENST00000338008	human	ensembl	74_37	+1	known	missense	c.3721	p.N1241H	1.000	pfam_DUF3480,pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE16	HGNC	ENSG00000039319				73	0	0	69	34	33.0097
MSH3	0	genome.wustl.edu	37	5	80064742	80064742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80064742	80064742	G	A	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	missense	c.2173	p.E725K	0.126	pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				80	0	0	58	33	36.2637
MSH3	0	genome.wustl.edu	37	5	80109451	80109451	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80109451	80109451	A	C	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	missense	c.2704	p.K902Q	1.000	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				146	0	0	82	44	34.9206
RASGRF2	0	genome.wustl.edu	37	5	80422905	80422905	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80422905	80422905	A	G	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.2609	p.D870G	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				63	0	0	43	21	32.8125
RASGRF2	0	genome.wustl.edu	37	5	80497154	80497154	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80497154	80497154	C	T	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	silent	c.2799	p.F933	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319				96	0	0	56	32	36.3636
CKMT2	0	genome.wustl.edu	37	5	80559356	80559356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80559356	80559356	G	A	SNP	CKMT2	ENST00000254035	human	ensembl	74_37	+1	known	missense	c.1061	p.R354H	1.000	pfam_ATP-guanido_PTrfase_cat	pfam_ATP-guanido_PTrfase_cat,pfam_ATP-guanido_PTrfase_N,superfamily_ATP-guanido_PTrfase_N	-	no_errors	CKMT2	HGNC	ENSG00000131730				136	0	0	68	47	40.8696
ACOT12	0	genome.wustl.edu	37	5	80639678	80639678	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	80639678	80639678	C	A	SNP	ACOT12	ENST00000307624	human	ensembl	74_37	-1	known	nonsense	c.1003	p.E335*	0.996	NULL	pfam_Thioestr_supf,pfam_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	-	no_errors	ACOT12	HGNC	ENSG00000172497				78	0	0	44	16	26.6667
RPS23	0	genome.wustl.edu	37	5	81573622	81573622	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	81573622	81573622	T	G	SNP	RPS23	ENST00000296674	human	ensembl	74_37	-1	known	silent	c.54	p.R18	0.719	pfam_Ribosomal_S12/S23,pirsf_Ribosomal_S12/S23,tigrfam_Ribosomal_S23_euk/arc	pfam_Ribosomal_S12/S23,superfamily_NA-bd_OB-fold,pirsf_Ribosomal_S12/S23,tigrfam_Ribosomal_S23_euk/arc	-	no_errors	RPS23	HGNC	ENSG00000186468				136	0	0	62	36	36.7347
VCAN	0	genome.wustl.edu	37	5	82815188	82815188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	82815188	82815188	G	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.1063	p.D355N	0.976	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				174	0	0	34	101	74.8148
VCAN	0	genome.wustl.edu	37	5	82832766	82832766	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	82832766	82832766	C	T	SNP	VCAN	ENST00000513016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	VCAN	HGNC	ENSG00000038427				19	0	0	20	9	31.0345
VCAN	0	genome.wustl.edu	37	5	82833723	82833723	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	82833723	82833723	C	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.4901	p.S1634Y	0.733	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				87	0	0	48	31	39.2405
VCAN	0	genome.wustl.edu	37	5	82834640	82834640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	82834640	82834640	G	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.5818	p.E1940K	0.021	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				155	0	0	91	45	33.0882
VCAN	0	genome.wustl.edu	37	5	82834920	82834920	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	82834920	82834920	T	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.6098	p.F2033C	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				80	0	0	36	18	33.3333
NBPF22P	0	genome.wustl.edu	37	5	85592091	85592091	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	85592091	85592091	A	C	SNP	NBPF22P	ENST00000590707	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	NBPF22P	HGNC	ENSG00000205449				9	0	0	5	4	44.4444
RASA1	0	genome.wustl.edu	37	5	86686667	86686667	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	86686667	86686667	A	C	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.3111	p.Q1037H	1.000	superfamily_Rho_GTPase_activation_prot,smart_RasGAP	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				76	0	0	39	25	39.0625
TMEM161B	0	genome.wustl.edu	37	5	87498828	87498828	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	87498828	87498828	T	C	SNP	TMEM161B	ENST00000296595	human	ensembl	74_37	-1	known	missense	c.865	p.T289A	1.000	pfam_Transmembrane_161A/B	pfam_Transmembrane_161A/B	-	no_errors	TMEM161B	HGNC	ENSG00000164180				148	0	0	85	39	31.4516
CETN3	0	genome.wustl.edu	37	5	89695264	89695264	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	89695264	89695264	C	T	SNP	CETN3	ENST00000283122	human	ensembl	74_37	-1	known	missense	c.371	p.R124Q	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN3	HGNC	ENSG00000153140				77	0	0	57	32	35.9551
LYSMD3	0	genome.wustl.edu	37	5	89814712	89814712	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	89814712	89814712	A	G	SNP	LYSMD3	ENST00000315948	human	ensembl	74_37	-1	known	missense	c.845	p.I282T	0.008	NULL	pfam_LysM_dom,smart_LysM_dom	-	no_errors	LYSMD3	HGNC	ENSG00000176018				140	0	0	89	51	36.4286
GPR98	0	genome.wustl.edu	37	5	89948166	89948166	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	89948166	89948166	T	G	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.3420	p.I1140M	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				141	0	0	95	47	33.0986
GPR98	0	genome.wustl.edu	37	5	89986685	89986685	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	89986685	89986685	C	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	nonsense	c.6778	p.R2260*	1.000	smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				26	0	0	24	10	29.4118
GPR98	0	genome.wustl.edu	37	5	90136657	90136657	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	90136657	90136657	C	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.16874	p.S5625L	0.584	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				123	0	0	63	27	30
ARRDC3	0	genome.wustl.edu	37	5	90669530	90669530	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	90669530	90669530	G	A	SNP	ARRDC3	ENST00000265138	human	ensembl	74_37	-1	known	nonsense	c.1159	p.R387*	1.000	NULL	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369				137	1	0.724638	81	36	30.7692
ARRDC3	0	genome.wustl.edu	37	5	90678662	90678662	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	90678662	90678662	T	C	SNP	ARRDC3	ENST00000265138	human	ensembl	74_37	-1	known	missense	c.248	p.N83S	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC3	HGNC	ENSG00000113369				169	0	0	162	9	5.26316
SEMA5A	0	genome.wustl.edu	37	5	9227037	9227037	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	9227037	9227037	C	T	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.376	p.D126N	0.501	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				78	0	0	71	13	15.4762
TTC37	0	genome.wustl.edu	37	5	94863782	94863782	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	94863782	94863782	C	T	SNP	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	missense	c.1069	p.A357T	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677				99	0	0	72	32	30.7692
SPATA9	0	genome.wustl.edu	37	5	95011265	95011265	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	95011265	95011265	G	A	SNP	SPATA9	ENST00000274432	human	ensembl	74_37	-1	known	missense	c.229	p.R77C	0.062	NULL	NULL	-	no_errors	SPATA9	HGNC	ENSG00000145757				100	0	0	54	34	38.6364
CAST	0	genome.wustl.edu	37	5	96064902	96064902	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	96064902	96064902	G	T	SNP	CAST	ENST00000395813	human	ensembl	74_37	+1	known	nonsense	c.424	p.E142*	1.000	NULL	pfam_Prot_inh_calpain	-	no_errors	CAST	HGNC	ENSG00000153113				58	0	0	41	21	33.871
ERAP1	0	genome.wustl.edu	37	5	96117444	96117444	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	96117444	96117444	T	G	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.2400	p.Q800H	0.019	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				126	0	0	86	35	28.9256
RGMB	0	genome.wustl.edu	37	5	98129003	98129003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	98129003	98129003	G	A	SNP	RGMB	ENST00000308234	human	ensembl	74_37	+1	known	missense	c.983	p.R328H	1.000	pfam_RGM_C	pfam_RGM_C,pfam_RGM_N	-	no_errors	RGMB	HGNC	ENSG00000174136				42	0	0	25	8	24.2424
CHD1	0	genome.wustl.edu	37	5	98209305	98209305	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	98209305	98209305	T	C	SNP	CHD1	ENST00000284049	human	ensembl	74_37	-1	known	missense	c.3563	p.E1188G	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922				65	0	0	57	24	29.6296
MCHR2	0	genome.wustl.edu	37	6	100395798	100395798	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	100395798	100395798	C	A	SNP	MCHR2	ENST00000281806	human	ensembl	74_37	-1	known	missense	c.232	p.A78S	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH2_receptor,prints_GPCR_Rhodpsn,prints_MCH_rcpt	-	no_errors	MCHR2	HGNC	ENSG00000152034				128	0	0	58	28	32.5581
ASCC3	0	genome.wustl.edu	37	6	101091945	101091945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	101091945	101091945	T	C	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.3694	p.I1232V	1.000	pfam_Sec63-dom,superfamily_P-loop_NTPase,smart_Sec63-dom	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				119	0	0	74	49	39.8374
ASCC3	0	genome.wustl.edu	37	6	101166000	101166000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	101166000	101166000	C	T	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.2030	p.R677Q	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				77	0	0	44	25	36.2319
ASCC3	0	genome.wustl.edu	37	6	101246682	101246682	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	101246682	101246682	A	G	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	silent	c.1302	p.N434	0.998	superfamily_P-loop_NTPase	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				105	0	0	50	30	37.5
ASCC3	0	genome.wustl.edu	37	6	101248368	101248368	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	101248368	101248368	T	G	SNP	ASCC3	ENST00000369162	human	ensembl	74_37	-1	known	missense	c.935	p.K312T	1.000	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249				16	0	0	16	12	42.8571
GRIK2	0	genome.wustl.edu	37	6	102074270	102074270	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	102074270	102074270	C	A	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.299	p.S100Y	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				403	0	0	206	120	36.8098
GRIK2	0	genome.wustl.edu	37	6	102134199	102134199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	102134199	102134199	G	A	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	missense	c.922	p.D308N	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				86	0	0	85	28	24.7788
HACE1	0	genome.wustl.edu	37	6	105224916	105224916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	105224916	105224916	G	A	SNP	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	missense	c.1748	p.A583V	1.000	superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382				49	0	0	25	26	50.9804
HACE1	0	genome.wustl.edu	37	6	105239404	105239404	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	105239404	105239404	T	G	SNP	HACE1	ENST00000262903	human	ensembl	74_37	-1	known	missense	c.1049	p.K350T	1.000	NULL	pfam_HECT,pfam_Ankyrin_rpt,superfamily_HECT,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_HECT,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_HECT,prints_Ankyrin_rpt	-	no_errors	HACE1	HGNC	ENSG00000085382				141	0	0	93	52	35.8621
BVES	0	genome.wustl.edu	37	6	105577274	105577274	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	105577274	105577274	G	T	SNP	BVES	ENST00000314641	human	ensembl	74_37	-1	known	missense	c.331	p.L111I	1.000	NULL	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276				48	0	0	26	22	45.8333
POPDC3	0	genome.wustl.edu	37	6	105606497	105606497	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	105606497	105606497	T	G	SNP	POPDC3	ENST00000254765	human	ensembl	74_37	-1	known	missense	c.724	p.K242Q	1.000	pfam_Popeye_prot,superfamily_cNMP-bd-like	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	POPDC3	HGNC	ENSG00000132429				219	0	0	155	90	36.7347
PREP	0	genome.wustl.edu	37	6	105816843	105816843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	105816843	105816843	C	T	SNP	PREP	ENST00000369110	human	ensembl	74_37	-1	known	missense	c.652	p.D218N	0.544	pfam_Pept_S9A_N	pfam_Pept_S9A_N,pfam_Peptidase_S9,prints_Peptidase_S9A	-	no_errors	PREP	HGNC	ENSG00000085377				130	0	0	119	47	28.3133
GCNT2	0	genome.wustl.edu	37	6	10586905	10586905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	10586905	10586905	G	A	SNP	GCNT2	ENST00000265012	human	ensembl	74_37	+1	known	missense	c.683	p.R228Q	1.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846				126	0	0	75	36	32.4324
AIM1	0	genome.wustl.edu	37	6	107000109	107000109	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	107000109	107000109	C	A	SNP	AIM1	ENST00000487681	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AIM1	HGNC	ENSG00000112297				20	0	0	6	6	50
PDSS2	0	genome.wustl.edu	37	6	107780297	107780297	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	107780297	107780297	A	G	SNP	PDSS2	ENST00000369037	human	ensembl	74_37	-1	known	missense	c.193	p.S65P	1.000	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS2	HGNC	ENSG00000164494				94	0	0	52	24	31.5789
NR2E1	0	genome.wustl.edu	37	6	108499413	108499413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	108499413	108499413	C	T	SNP	NR2E1	ENST00000368986	human	ensembl	74_37	+1	known	missense	c.610	p.P204S	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	NR2E1	HGNC	ENSG00000112333				96	0	0	52	19	26.7606
GCM2	0	genome.wustl.edu	37	6	10876691	10876691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	10876691	10876691	G	A	SNP	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	missense	c.443	p.A148V	0.955	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				84	0	0	36	18	33.3333
ARMC2	0	genome.wustl.edu	37	6	109197433	109197433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109197433	109197433	C	T	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.551	p.A184V	0.092	NULL	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				69	0	0	61	28	31.4607
ARMC2	0	genome.wustl.edu	37	6	109286202	109286202	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109286202	109286202	G	T	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.2305	p.D769Y	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				176	0	0	139	75	35.0467
ZBTB24	0	genome.wustl.edu	37	6	109787482	109787482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109787482	109787482	C	T	SNP	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	missense	c.1666	p.V556I	0.999	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				160	0	0	93	40	30.0752
AK9	0	genome.wustl.edu	37	6	109814771	109814771	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109814771	109814771	A	C	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.5537	p.F1846C	1.000	NULL	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				83	0	0	64	5	7.24638
AK9	0	genome.wustl.edu	37	6	109816641	109816641	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109816641	109816641	G	A	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.5318	p.S1773L	0.208	NULL	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				61	0	0	42	17	28.8136
AK9	0	genome.wustl.edu	37	6	109820263	109820263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	109820263	109820263	G	T	SNP	AK9	ENST00000424296	human	ensembl	74_37	-1	known	missense	c.5030	p.S1677Y	0.643	NULL	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				40	0	0	28	7	20
FIG4	0	genome.wustl.edu	37	6	110048403	110048403	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	110048403	110048403	C	T	SNP	FIG4	ENST00000230124	human	ensembl	74_37	+1	known	silent	c.381	p.V127	0.688	pfam_Syja_N	pfam_Syja_N,pfscan_Syja_N	-	no_errors	FIG4	HGNC	ENSG00000112367				193	0	0	141	52	26.943
WASF1	0	genome.wustl.edu	37	6	110424718	110424718	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	110424718	110424718	A	C	SNP	WASF1	ENST00000359451	human	ensembl	74_37	-1	known	silent	c.756	p.L252	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF1	HGNC	ENSG00000112290				105	0	0	75	37	33.0357
ERVFRD-1	0	genome.wustl.edu	37	6	11104843	11104843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	11104843	11104843	C	T	SNP	ERVFRD-1	ENST00000472091	human	ensembl	74_37	-1	known	missense	c.701	p.R234Q	0.861	NULL	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVFRD-1	HGNC	ENSG00000244476				79	0	0	42	16	27.5862
GTF3C6	0	genome.wustl.edu	37	6	111288852	111288852	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111288852	111288852	G	T	SNP	GTF3C6	ENST00000329970	human	ensembl	74_37	+1	known	missense	c.501	p.E167D	0.103	NULL	pfam_TFIIIC_tau55-rel	-	no_errors	GTF3C6	HGNC	ENSG00000155115				164	0	0	95	51	34.9315
SLC16A10	0	genome.wustl.edu	37	6	111540115	111540115	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111540115	111540115	C	T	SNP	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	silent	c.1185	p.F395	0.996	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394				231	0	0	114	58	33.7209
REV3L	0	genome.wustl.edu	37	6	111621065	111621065	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111621065	111621065	A	G	SNP	REV3L	ENST00000462119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	REV3L	HGNC	ENSG00000009413				21	0	0	9	8	47.0588
REV3L	0	genome.wustl.edu	37	6	111680142	111680142	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111680142	111680142	C	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.6955	p.D2319Y	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				122	0	0	72	39	35.1351
REV3L	0	genome.wustl.edu	37	6	111694807	111694807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111694807	111694807	C	T	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.4751	p.R1584Q	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				325	0	0	209	104	33.2268
REV3L	0	genome.wustl.edu	37	6	111695509	111695509	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111695509	111695509	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.4049	p.E1350G	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				97	0	0	92	59	39.0728
REV3L	0	genome.wustl.edu	37	6	111709117	111709117	+	Splice_Site	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111709117	111709117	C	A	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	splice_site	c.948-1	e9-1	1.000	-	-	-	no_errors	REV3L	HGNC	ENSG00000009413				61	0	0	39	22	36.0656
FYN	0	genome.wustl.edu	37	6	111995824	111995824	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	111995824	111995824	A	C	SNP	FYN	ENST00000354650	human	ensembl	74_37	-1	known	missense	c.1283	p.F428C	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FYN	HGNC	ENSG00000010810				188	0	0	103	50	32.6797
WISP3	0	genome.wustl.edu	37	6	112389552	112389552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	112389552	112389552	G	A	SNP	WISP3	ENST00000361714	human	ensembl	74_37	+1	known	missense	c.788	p.R263K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pirsf_IGFBP_CNN,pfscan_Thrombospondin_1_rpt	pfam_IGFBP-like,pfam_Cys_knot,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_Thrombospondin_1_rpt,smart_Cys_knot_C,pirsf_IGFBP_CNN,pfscan_Cys_knot_C,pfscan_Thrombospondin_1_rpt	-	no_errors	WISP3	HGNC	ENSG00000112761				55	0	0	29	8	21.6216
TUBE1	0	genome.wustl.edu	37	6	112397530	112397530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	112397530	112397530	T	C	SNP	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	missense	c.631	p.N211D	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				78	0	0	65	23	26.1364
LAMA4	0	genome.wustl.edu	37	6	112496523	112496523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	112496523	112496523	G	A	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.1349	p.A450V	0.996	pfam_Laminin_I	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				129	0	0	81	43	34.6774
COL10A1	0	genome.wustl.edu	37	6	116441409	116441409	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	116441409	116441409	T	C	SNP	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	missense	c.1870	p.T624A	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				147	0	0	68	51	42.8571
COL10A1	0	genome.wustl.edu	37	6	116441517	116441517	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	116441517	116441517	T	G	SNP	COL10A1	ENST00000243222	human	ensembl	74_37	-1	known	missense	c.1762	p.I588L	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL10A1	HGNC	ENSG00000123500				130	0	0	58	31	34.8315
DSE	0	genome.wustl.edu	37	6	116720368	116720368	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	116720368	116720368	C	T	SNP	DSE	ENST00000540275	human	ensembl	74_37	+1	known	nonsense	c.532	p.R178*	1.000	NULL	NULL	-	no_errors	DSE	HGNC	ENSG00000111817				55	0	0	28	21	42.8571
FAM162B	0	genome.wustl.edu	37	6	117086337	117086337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117086337	117086337	G	A	SNP	FAM162B	ENST00000368557	human	ensembl	74_37	-1	known	missense	c.254	p.S85L	0.734	pfam_DUF1075	pfam_DUF1075	-	no_errors	FAM162B	HGNC	ENSG00000183807				106	0	0	58	18	23.6842
GPRC6A	0	genome.wustl.edu	37	6	117127925	117127925	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117127925	117127925	G	A	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.943	p.P315S	0.128	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612				137	0	0	111	44	28.3871
RFX6	0	genome.wustl.edu	37	6	117203536	117203536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117203536	117203536	C	T	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.511	p.R171C	1.000	pfam_DNA-bd_RFX	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				59	0	0	45	13	22.4138
RFX6	0	genome.wustl.edu	37	6	117203581	117203581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117203581	117203581	G	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.556	p.G186S	1.000	pfam_DNA-bd_RFX	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				60	0	0	55	17	23.6111
ROS1	0	genome.wustl.edu	37	6	117641051	117641051	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117641051	117641051	C	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.5920	p.E1974K	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				144	0	0	109	32	22.695
ROS1	0	genome.wustl.edu	37	6	117647545	117647545	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117647545	117647545	T	G	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.5399	p.N1800T	0.001	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				36	0	0	26	16	38.0952
ROS1	0	genome.wustl.edu	37	6	117658374	117658374	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	117658374	117658374	C	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	nonsense	c.5209	p.E1737*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				61	0	0	49	24	32.8767
SLC35F1	0	genome.wustl.edu	37	6	118588164	118588164	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	118588164	118588164	G	T	SNP	SLC35F1	ENST00000360388	human	ensembl	74_37	+1	known	missense	c.484	p.D162Y	1.000	pfam_SLC35_F1/F2/F6,pfam_DMT	pfam_SLC35_F1/F2/F6,pfam_DMT	-	no_errors	SLC35F1	HGNC	ENSG00000196376				401	0	0	218	88	28.7582
CEP85L	0	genome.wustl.edu	37	6	118844970	118844970	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	118844970	118844970	G	A	SNP	CEP85L	ENST00000368488	human	ensembl	74_37	-1	known	silent	c.1143	p.I381	1.000	NULL	NULL	-	no_errors	CEP85L	HGNC	ENSG00000111860				38	0	0	46	15	24.5902
ASF1A	0	genome.wustl.edu	37	6	119221986	119221986	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	119221986	119221986	A	C	SNP	ASF1A	ENST00000229595	human	ensembl	74_37	+1	known	missense	c.165	p.Q55H	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875				174	0	0	110	59	34.9112
ASF1A	0	genome.wustl.edu	37	6	119226904	119226904	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	119226904	119226904	G	T	SNP	ASF1A	ENST00000229595	human	ensembl	74_37	+1	known	nonsense	c.313	p.E105*	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875				163	0	0	53	82	60.7407
FAM184A	0	genome.wustl.edu	37	6	119345901	119345901	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	119345901	119345901	T	G	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.237	p.E79D	1.000	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				52	0	0	50	19	27.5362
MAN1A1	0	genome.wustl.edu	37	6	119510876	119510876	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	119510876	119510876	A	G	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	missense	c.1499	p.L500P	0.984	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885				149	0	0	95	56	37.0861
HIVEP1	0	genome.wustl.edu	37	6	12120209	12120209	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12120209	12120209	A	C	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.181	p.K61Q	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				165	0	0	101	53	34.4156
HIVEP1	0	genome.wustl.edu	37	6	12120319	12120319	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12120319	12120319	G	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.291	p.Q97H	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				143	0	0	84	50	37.3134
HIVEP1	0	genome.wustl.edu	37	6	12121176	12121176	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12121176	12121176	T	G	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.1148	p.V383G	0.944	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				317	0	0	160	86	34.9593
HIVEP1	0	genome.wustl.edu	37	6	12122667	12122667	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12122667	12122667	T	C	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.2639	p.V880A	0.978	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				180	0	0	99	49	33.1081
TBC1D32	0	genome.wustl.edu	37	6	121642797	121642797	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	121642797	121642797	C	A	SNP	TBC1D32	ENST00000464622	human	ensembl	74_37	-1	known	missense	c.299	p.R100I	0.904	NULL	NULL	-	no_errors	TBC1D32	HGNC	ENSG00000146350				269	0	0	142	68	32.381
HSF2	0	genome.wustl.edu	37	6	122753198	122753198	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	122753198	122753198	G	A	SNP	HSF2	ENST00000368455	human	ensembl	74_37	+1	known	missense	c.1444	p.E482K	1.000	pfam_Vert_HSTF_C	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF2	HGNC	ENSG00000025156				161	0	0	107	47	30.5195
SMPDL3A	0	genome.wustl.edu	37	6	123124953	123124953	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	123124953	123124953	A	C	SNP	SMPDL3A	ENST00000368440	human	ensembl	74_37	+1	known	missense	c.713	p.N238T	0.860	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	pfam_PEstase_dom,pirsf_ASM-like_Pdiesterase_prd	-	no_errors	SMPDL3A	HGNC	ENSG00000172594				118	0	0	99	37	27.2059
TRDN	0	genome.wustl.edu	37	6	123699033	123699033	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	123699033	123699033	C	A	SNP	TRDN	ENST00000398178	human	ensembl	74_37	-1	known	missense	c.1197	p.K399N	1.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439				10	0	0	10	4	28.5714
TPD52L1	0	genome.wustl.edu	37	6	125550384	125550384	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	125550384	125550384	A	C	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	missense	c.256	p.S86R	0.952	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907				113	0	0	86	6	6.52174
RSPO3	0	genome.wustl.edu	37	6	127469858	127469858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	127469858	127469858	T	G	SNP	RSPO3	ENST00000368317	human	ensembl	74_37	+1	known	missense	c.163	p.L55V	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pfam_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Thrombospondin_1_rpt,smart_Furin_repeat,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	RSPO3	HGNC	ENSG00000146374				107	0	0	72	30	29.4118
RNF146	0	genome.wustl.edu	37	6	127608756	127608756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	127608756	127608756	G	A	SNP	RNF146	ENST00000368314	human	ensembl	74_37	+1	known	missense	c.998	p.R333Q	0.064	NULL	pfam_WWE-dom,smart_Znf_RING,smart_WWE-dom_subgr,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	RNF146	HGNC	ENSG00000118518				131	0	0	82	32	28.0702
KIAA0408	0	genome.wustl.edu	37	6	127765306	127765306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	127765306	127765306	C	A	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	missense	c.2033	p.R678I	0.079	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				78	0	0	37	14	27.451
KIAA0408	0	genome.wustl.edu	37	6	127770989	127770989	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	127770989	127770989	G	A	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	nonsense	c.556	p.R186*	0.990	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				136	0	0	97	41	29.7101
SOGA3	0	genome.wustl.edu	37	6	127797590	127797590	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	127797590	127797590	G	A	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	silent	c.1581	p.C527	1.000	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				113	0	0	64	43	40.1869
THEMIS	0	genome.wustl.edu	37	6	128150816	128150816	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	128150816	128150816	C	A	SNP	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	nonsense	c.514	p.E172*	0.999	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				119	0	0	100	41	29.078
THEMIS	0	genome.wustl.edu	37	6	128176253	128176253	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	128176253	128176253	T	C	SNP	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	missense	c.172	p.K58E	1.000	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				68	0	0	46	28	37.8378
PHACTR1	0	genome.wustl.edu	37	6	12933942	12933942	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12933942	12933942	G	A	SNP	PHACTR1	ENST00000379348	human	ensembl	74_37	+1	known	missense	c.328	p.E110K	0.000	NULL	NULL	-	no_errors	PHACTR1	HGNC	ENSG00000112137				134	0	0	75	41	35.3448
PHACTR1	0	genome.wustl.edu	37	6	12934078	12934078	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	12934078	12934078	G	T	SNP	PHACTR1	ENST00000379348	human	ensembl	74_37	+1	known	missense	c.464	p.R155I	0.008	NULL	NULL	-	no_errors	PHACTR1	HGNC	ENSG00000112137				44	0	0	25	16	39.0244
LAMA2	0	genome.wustl.edu	37	6	129380932	129380932	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	129380932	129380932	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.287	p.R96I	1.000	pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				54	0	0	54	15	21.7391
LAMA2	0	genome.wustl.edu	37	6	129826403	129826403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	129826403	129826403	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.8606	p.R2869I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				98	0	0	59	24	28.9157
TMEM244	0	genome.wustl.edu	37	6	130154651	130154651	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	130154651	130154651	A	C	SNP	TMEM244	ENST00000368143	human	ensembl	74_37	-1	known	missense	c.273	p.D91E	1.000	pfam_Integral_membrane_SYS1-rel	pfam_Integral_membrane_SYS1-rel	-	no_errors	TMEM244	HGNC	ENSG00000203756				102	0	0	76	47	38.2114
SAMD3	0	genome.wustl.edu	37	6	130497126	130497126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	130497126	130497126	G	A	SNP	SAMD3	ENST00000368134	human	ensembl	74_37	-1	known	missense	c.682	p.R228C	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483				107	0	0	66	42	38.8889
SAMD3	0	genome.wustl.edu	37	6	130505666	130505666	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	130505666	130505666	C	T	SNP	SAMD3	ENST00000368134	human	ensembl	74_37	-1	known	silent	c.486	p.E162	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483				78	0	0	30	19	38.7755
TMEM200A	0	genome.wustl.edu	37	6	130762121	130762121	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	130762121	130762121	A	G	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	missense	c.554	p.Y185C	0.899	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				109	0	0	58	38	39.5833
EPB41L2	0	genome.wustl.edu	37	6	131276416	131276416	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	131276416	131276416	T	G	SNP	EPB41L2	ENST00000337057	human	ensembl	74_37	-1	known	missense	c.534	p.K178N	0.014	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819				173	0	0	93	59	38.8158
MED23	0	genome.wustl.edu	37	6	131911481	131911481	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	131911481	131911481	C	A	SNP	MED23	ENST00000368058	human	ensembl	74_37	-1	known	missense	c.3806	p.R1269I	1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282				51	0	0	44	18	29.0323
ENPP1	0	genome.wustl.edu	37	6	132179855	132179855	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	132179855	132179855	A	C	SNP	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	missense	c.763	p.K255Q	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594				43	0	0	43	19	30.6452
MOXD1	0	genome.wustl.edu	37	6	132641802	132641802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	132641802	132641802	C	T	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	missense	c.1331	p.R444H	0.994	superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				40	0	0	25	9	26.4706
EYA4	0	genome.wustl.edu	37	6	133827290	133827290	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	133827290	133827290	T	G	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	missense	c.1238	p.I413S	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319				70	0	0	50	30	37.5
BCLAF1	0	genome.wustl.edu	37	6	136589344	136589344	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136589344	136589344	C	A	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	nonsense	c.2353	p.E785*	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				223	0	0	155	43	21.7172
BCLAF1	0	genome.wustl.edu	37	6	136590593	136590593	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136590593	136590593	T	G	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.2201	p.K734T	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				67	0	0	65	22	25.2874
BCLAF1	0	genome.wustl.edu	37	6	136597477	136597477	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136597477	136597477	C	A	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1186	p.D396Y	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				715	1	0.139665	562	93	14.1985
MAP3K5	0	genome.wustl.edu	37	6	136888937	136888937	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136888937	136888937	T	C	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	missense	c.3593	p.H1198R	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				93	0	0	50	28	35.8974
MAP3K5	0	genome.wustl.edu	37	6	136904864	136904864	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136904864	136904864	C	T	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	silent	c.3240	p.P1080	0.170	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				124	1	0.8	61	36	37.1134
MAP3K5	0	genome.wustl.edu	37	6	136923031	136923031	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	136923031	136923031	A	G	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	silent	c.2766	p.D922	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442				93	0	0	55	35	38.8889
KIAA1244	0	genome.wustl.edu	37	6	138644882	138644882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	138644882	138644882	C	T	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	missense	c.4841	p.A1614V	1.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				63	0	0	38	17	30.9091
KIAA1244	0	genome.wustl.edu	37	6	138655224	138655224	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	138655224	138655224	G	A	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	silent	c.5241	p.T1747	0.000	NULL	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				72	0	0	37	12	24.4898
REPS1	0	genome.wustl.edu	37	6	139241371	139241371	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	139241371	139241371	G	A	SNP	REPS1	ENST00000450536	human	ensembl	74_37	-1	known	silent	c.1509	p.F503	1.000	NULL	smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	REPS1	HGNC	ENSG00000135597				83	0	0	68	50	42.3729
TXLNB	0	genome.wustl.edu	37	6	139564361	139564361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	139564361	139564361	C	T	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	missense	c.1357	p.E453K	0.981	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440				98	0	0	38	17	30.9091
HIVEP2	0	genome.wustl.edu	37	6	143082678	143082678	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	143082678	143082678	G	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	missense	c.5543	p.S1848Y	1.000	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				180	0	0	122	54	30.6818
PHACTR2	0	genome.wustl.edu	37	6	144086472	144086472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144086472	144086472	C	T	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.769	p.R257C	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				153	0	0	108	50	31.6456
PLAGL1	0	genome.wustl.edu	37	6	144263068	144263068	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144263068	144263068	C	T	SNP	PLAGL1	ENST00000354765	human	ensembl	74_37	-1	known	silent	c.885	p.P295	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL1	HGNC	ENSG00000118495				140	0	0	62	32	34.0426
UTRN	0	genome.wustl.edu	37	6	144768371	144768371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144768371	144768371	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.1639	p.E547K	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				28	0	0	32	12	27.2727
UTRN	0	genome.wustl.edu	37	6	144808711	144808711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144808711	144808711	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.3850	p.A1284T	0.987	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				172	0	0	91	49	35
UTRN	0	genome.wustl.edu	37	6	144860536	144860536	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144860536	144860536	A	C	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.6476	p.K2159T	0.728	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				73	0	0	48	26	35.1351
UTRN	0	genome.wustl.edu	37	6	144869983	144869983	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	144869983	144869983	G	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.6803	p.R2268Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				43	0	0	29	24	45.283
FBXO30	0	genome.wustl.edu	37	6	146126324	146126324	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	146126324	146126324	T	G	SNP	FBXO30	ENST00000237281	human	ensembl	74_37	-1	known	silent	c.1218	p.V406	0.330	NULL	pfam_F-box_dom,superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO30	HGNC	ENSG00000118496				285	0	0	182	77	29.7297
SHPRH	0	genome.wustl.edu	37	6	146266673	146266673	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	146266673	146266673	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	silent	c.1422	p.Y474	0.642	pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				68	0	0	47	21	30.8824
KATNBL1P6	0	genome.wustl.edu	37	6	147123923	147123923	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147123923	147123923	G	T	SNP	KATNBL1P6	ENST00000562413	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	KATNBL1P6	HGNC	ENSG00000228283				35	0	0	27	14	34.1463
KATNBL1P6	0	genome.wustl.edu	37	6	147124649	147124649	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147124649	147124649	G	A	SNP	KATNBL1P6	ENST00000562413	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KATNBL1P6	HGNC	ENSG00000228283				104	0	0	69	28	28.866
KATNBL1P6	0	genome.wustl.edu	37	6	147124761	147124761	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147124761	147124761	C	A	SNP	KATNBL1P6	ENST00000562413	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	KATNBL1P6	HGNC	ENSG00000228283				42	0	0	28	12	30
STXBP5	0	genome.wustl.edu	37	6	147680279	147680279	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147680279	147680279	G	T	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	nonsense	c.2365	p.E789*	1.000	NULL	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				73	0	0	51	23	31.0811
STXBP5	0	genome.wustl.edu	37	6	147684753	147684753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147684753	147684753	C	T	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.2828	p.S943L	1.000	pfam_Lgl_C_dom,superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				113	0	0	83	49	37.1212
STXBP5	0	genome.wustl.edu	37	6	147703987	147703987	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	147703987	147703987	C	T	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	silent	c.3267	p.G1089	0.455	pfscan_Synaptobrevin	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				199	0	0	100	52	34.2105
SASH1	0	genome.wustl.edu	37	6	148865654	148865654	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	148865654	148865654	G	A	SNP	SASH1	ENST00000367467	human	ensembl	74_37	+1	known	silent	c.3048	p.A1016	0.000	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961				78	0	0	13	25	65.7895
UST	0	genome.wustl.edu	37	6	149395372	149395372	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149395372	149395372	C	T	SNP	UST	ENST00000466695	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UST	HGNC	ENSG00000111962				18	0	0	4	5	55.5556
SUMO4	0	genome.wustl.edu	37	6	149721599	149721599	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149721599	149721599	A	G	SNP	SUMO4	ENST00000326669	human	ensembl	74_37	+1	known	silent	c.72	p.G24	0.997	pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO4	HGNC	ENSG00000177688				133	0	0	55	41	42.7083
PPIL4	0	genome.wustl.edu	37	6	149862082	149862082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149862082	149862082	G	A	SNP	PPIL4	ENST00000253329	human	ensembl	74_37	-1	known	missense	c.317	p.S106F	1.000	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,pfam_RRM_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL4	HGNC	ENSG00000131013				158	0	0	52	47	47.4747
KATNA1	0	genome.wustl.edu	37	6	149954037	149954037	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149954037	149954037	T	G	SNP	KATNA1	ENST00000335647	human	ensembl	74_37	-1	known	missense	c.178	p.N60H	1.000	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNA1	HGNC	ENSG00000186625				84	0	0	20	32	61.5385
LATS1	0	genome.wustl.edu	37	6	149983146	149983146	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149983146	149983146	T	G	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.3112	p.N1038H	1.000	pfam_Pkinase_C,superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				143	0	0	82	20	19.6078
LATS1	0	genome.wustl.edu	37	6	149983213	149983213	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	149983213	149983213	G	T	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.3045	p.F1015L	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				165	0	0	41	46	52.8736
PLEKHG1	0	genome.wustl.edu	37	6	151161391	151161391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	151161391	151161391	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.3517	p.A1173T	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				230	0	0	53	49	48.0392
MTHFD1L	0	genome.wustl.edu	37	6	151239797	151239797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	151239797	151239797	G	A	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	missense	c.977	p.R326Q	1.000	NULL	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				144	0	0	29	44	60.274
AKAP12	0	genome.wustl.edu	37	6	151672532	151672532	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	151672532	151672532	G	T	SNP	AKAP12	ENST00000253332	human	ensembl	74_37	+1	known	missense	c.3006	p.M1002I	1.000	NULL	pfam_Pkinase-A_anch_WSK-motif,pfam_RII_binding_1	-	no_errors	AKAP12	HGNC	ENSG00000131016				77	0	0	16	26	61.9048
CCDC170	0	genome.wustl.edu	37	6	151865837	151865837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	151865837	151865837	G	A	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.574	p.D192N	0.641	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				107	0	0	35	32	47.7612
CCDC170	0	genome.wustl.edu	37	6	151894465	151894465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	151894465	151894465	G	A	SNP	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	missense	c.931	p.A311T	1.000	NULL	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				115	0	0	60	10	14.2857
SYNE1	0	genome.wustl.edu	37	6	152576134	152576134	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	152576134	152576134	G	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.19351	p.R6451G	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				37	0	0	9	12	57.1429
SYNE1	0	genome.wustl.edu	37	6	152631869	152631869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	152631869	152631869	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.16850	p.R5617Q	0.548	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				55	0	0	19	11	36.6667
SYNE1	0	genome.wustl.edu	37	6	152725425	152725425	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	152725425	152725425	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.6748	p.R2250	0.500	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				93	0	0	37	28	43.0769
SYNE1	0	genome.wustl.edu	37	6	152792886	152792886	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	152792886	152792886	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.1478	p.S493F	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				88	0	0	24	22	47.8261
SYNE1	0	genome.wustl.edu	37	6	152826458	152826458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	152826458	152826458	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.656	p.A219V	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				100	0	0	31	33	51.5625
OPRM1	0	genome.wustl.edu	37	6	154360644	154360644	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	154360644	154360644	A	G	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	+1	known	missense	c.244	p.T82A	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038				20	0	0	2	4	66.6667
JARID2	0	genome.wustl.edu	37	6	15501389	15501389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	15501389	15501389	C	T	SNP	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	missense	c.2197	p.R733C	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083				236	0	0	114	44	27.8481
TFB1M	0	genome.wustl.edu	37	6	155578994	155578994	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	155578994	155578994	A	C	SNP	TFB1M	ENST00000367166	human	ensembl	74_37	-1	known	missense	c.1017	p.D339E	0.000	NULL	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N	-	no_errors	TFB1M	HGNC	ENSG00000029639				125	0	0	34	39	53.4247
FNDC1	0	genome.wustl.edu	37	6	159653106	159653106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	159653106	159653106	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1562	p.R521Q	0.015	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				37	0	0	14	16	53.3333
FNDC1	0	genome.wustl.edu	37	6	159653414	159653414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	159653414	159653414	G	A	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	missense	c.1870	p.A624T	0.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694				76	0	0	13	25	65.7895
TCP1	0	genome.wustl.edu	37	6	160200773	160200773	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	160200773	160200773	A	G	SNP	TCP1	ENST00000321394	human	ensembl	74_37	-1	known	missense	c.1340	p.V447A	0.979	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_alpha	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_alpha	-	no_errors	TCP1	HGNC	ENSG00000120438				122	0	0	35	40	53.3333
LPA	0	genome.wustl.edu	37	6	161015117	161015117	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	161015117	161015117	A	G	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	missense	c.3502	p.C1168R	0.324	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				155	0	0	36	53	59.5506
FOXC1	0	genome.wustl.edu	37	6	1610914	1610914	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	1610914	1610914	G	T	SNP	FOXC1	ENST00000380874	human	ensembl	74_37	+1	known	missense	c.234	p.K78N	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598				89	0	0	51	31	37.8049
PLG	0	genome.wustl.edu	37	6	161132269	161132269	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	161132269	161132269	T	C	SNP	PLG	ENST00000494325	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	PLG	HGNC	ENSG00000122194				20	0	0	6	11	64.7059
PLG	0	genome.wustl.edu	37	6	161160158	161160158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	161160158	161160158	G	A	SNP	PLG	ENST00000308192	human	ensembl	74_37	+1	known	missense	c.1936	p.E646K	0.442	pirsf_Pept_S1A_plasmin,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_plasmin,pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	PLG	HGNC	ENSG00000122194				168	0	0	35	29	45.3125
MAP3K4	0	genome.wustl.edu	37	6	161470677	161470677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	161470677	161470677	C	T	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.1373	p.T458M	0.016	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				91	0	0	20	15	42.8571
MAP3K4	0	genome.wustl.edu	37	6	161513055	161513055	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	161513055	161513055	T	G	SNP	MAP3K4	ENST00000392142	human	ensembl	74_37	+1	known	missense	c.3149	p.V1050G	0.972	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K4	HGNC	ENSG00000085511				138	0	0	45	56	55.4455
GMPR	0	genome.wustl.edu	37	6	16274705	16274705	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	16274705	16274705	C	A	SNP	GMPR	ENST00000259727	human	ensembl	74_37	+1	known	silent	c.525	p.I175	0.996	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	pfam_IMP_DH_GMPRt,pirsf_GMP_reduct1,tigrfam_GMP_reduct1	-	no_errors	GMPR	HGNC	ENSG00000137198				75	0	0	39	17	30.3571
C6orf118	0	genome.wustl.edu	37	6	165713944	165713944	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	165713944	165713944	T	G	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.785	p.Q262P	0.004	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				281	0	0	67	72	51.7986
RNASET2	0	genome.wustl.edu	37	6	167356668	167356668	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	167356668	167356668	A	C	SNP	RNASET2	ENST00000509073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RNASET2	HGNC	ENSG00000026297				10	0	0	4	5	55.5556
KIF25	0	genome.wustl.edu	37	6	168440763	168440763	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	168440763	168440763	G	A	SNP	KIF25	ENST00000354419	human	ensembl	74_37	+1	known	silent	c.513	p.S171	0.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF25	HGNC	ENSG00000125337				159	1	0.625	35	29	45.3125
THBS2	0	genome.wustl.edu	37	6	169634789	169634789	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	169634789	169634789	A	C	SNP	THBS2	ENST00000461848	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	THBS2	HGNC	ENSG00000186340				55	0	0	13	11	45.8333
DLL1	0	genome.wustl.edu	37	6	170592125	170592125	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	170592125	170592125	G	A	SNP	DLL1	ENST00000366756	human	ensembl	74_37	-1	known	missense	c.2117	p.S706L	1.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	DLL1	HGNC	ENSG00000198719				240	0	0	63	42	40
NUP153	0	genome.wustl.edu	37	6	17648090	17648090	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	17648090	17648090	A	C	SNP	NUP153	ENST00000537253	human	ensembl	74_37	-1	known	missense	c.1673	p.F558C	1.000	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789				159	0	0	96	49	33.7931
DEK	0	genome.wustl.edu	37	6	18256686	18256686	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	18256686	18256686	C	T	SNP	DEK	ENST00000397239	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	1.000	NULL	pfam_DEK_C,pfam_SAP_dom,smart_SAP_dom	-	no_errors	DEK	HGNC	ENSG00000124795				54	0	0	35	17	32.6923
MIR548A1	0	genome.wustl.edu	37	6	18572108	18572108	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	18572108	18572108	T	C	SNP	MIR548A1	ENST00000385041	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	MIR548A1	HGNC	ENSG00000207775				89	0	0	52	31	37.3494
MBOAT1	0	genome.wustl.edu	37	6	20118675	20118675	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	20118675	20118675	T	G	SNP	MBOAT1	ENST00000324607	human	ensembl	74_37	-1	known	missense	c.1004	p.K335T	0.999	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197				64	0	0	64	5	7.24638
E2F3	0	genome.wustl.edu	37	6	20480168	20480168	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	20480168	20480168	G	A	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	missense	c.485	p.R162Q	0.993	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				24	0	0	20	11	35.4839
E2F3	0	genome.wustl.edu	37	6	20483077	20483077	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	20483077	20483077	G	A	SNP	E2F3	ENST00000346618	human	ensembl	74_37	+1	known	silent	c.810	p.E270	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F3	HGNC	ENSG00000112242				101	0	0	63	20	24.0964
NRSN1	0	genome.wustl.edu	37	6	24145834	24145834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	24145834	24145834	G	A	SNP	NRSN1	ENST00000378491	human	ensembl	74_37	+1	known	missense	c.248	p.G83D	1.000	NULL	NULL	-	no_errors	NRSN1	HGNC	ENSG00000152954				175	1	0.568182	80	47	37.0079
GPLD1	0	genome.wustl.edu	37	6	24489651	24489651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	24489651	24489651	A	G	SNP	GPLD1	ENST00000230036	human	ensembl	74_37	-1	known	missense	c.89	p.V30A	0.329	prints_Gprt_PLipase_D	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Gprt_PLipase_D	-	no_errors	GPLD1	HGNC	ENSG00000112293				72	0	0	46	23	33.3333
KIAA0319	0	genome.wustl.edu	37	6	24596714	24596714	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	24596714	24596714	T	C	SNP	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	missense	c.188	p.D63G	1.000	smart_MANSC_N,pfscan_MANSC	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261				98	0	0	51	24	32
GMNN	0	genome.wustl.edu	37	6	24784681	24784681	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	24784681	24784681	G	T	SNP	GMNN	ENST00000230056	human	ensembl	74_37	+1	known	nonsense	c.367	p.E123*	1.000	pfam_Geminin_fam	pfam_Geminin_fam	-	no_errors	GMNN	HGNC	ENSG00000112312				78	0	0	46	10	17.8571
SCGN	0	genome.wustl.edu	37	6	25682209	25682209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	25682209	25682209	C	T	SNP	SCGN	ENST00000377961	human	ensembl	74_37	+1	known	missense	c.502	p.R168W	0.975	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SCGN	HGNC	ENSG00000079689				54	0	0	47	13	21.6667
HFE	0	genome.wustl.edu	37	6	26092943	26092943	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	26092943	26092943	T	C	SNP	HFE	ENST00000357618	human	ensembl	74_37	+1	known	missense	c.647	p.V216A	0.000	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HFE	HGNC	ENSG00000010704				228	0	0	118	56	32.1839
HIST1H1E	0	genome.wustl.edu	37	6	26157150	26157150	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	26157150	26157150	G	A	SNP	HIST1H1E	ENST00000304218	human	ensembl	74_37	+1	known	missense	c.532	p.A178T	1.000	prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1E	HGNC	ENSG00000168298				32	0	0	21	8	27.5862
HIST1H3F	0	genome.wustl.edu	37	6	26250748	26250748	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	26250748	26250748	C	A	SNP	HIST1H3F	ENST00000446824	human	ensembl	74_37	-1	known	missense	c.86	p.S29I	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3F	HGNC	ENSG00000256316				166	0	0	92	31	25.2033
BTN2A3P	0	genome.wustl.edu	37	6	26428927	26428927	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	26428927	26428927	T	G	SNP	BTN2A3P	ENST00000465856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549				206	0	0	89	43	32.5758
MYLK4	0	genome.wustl.edu	37	6	2671570	2671570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	2671570	2671570	G	A	SNP	MYLK4	ENST00000268446	human	ensembl	74_37	-1	known	missense	c.1132	p.R378C	0.001	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949				58	0	0	41	9	18
WRNIP1	0	genome.wustl.edu	37	6	2770510	2770510	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	2770510	2770510	C	T	SNP	WRNIP1	ENST00000380773	human	ensembl	74_37	+1	known	nonsense	c.1171	p.R391*	1.000	superfamily_P-loop_NTPase	pfam_MgsA_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_dyneun-rel_AAA,pfam_DUF815,pfam_IstB_ATP-bd,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_Znf_Rad18_put,smart_AAA+_ATPase	-	no_errors	WRNIP1	HGNC	ENSG00000124535				142	0	0	66	47	41.5929
ZSCAN12P1	0	genome.wustl.edu	37	6	28060394	28060394	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28060394	28060394	A	G	SNP	ZSCAN12P1	ENST00000529104	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.074	-	-	-	no_errors	ZSCAN12P1	HGNC	ENSG00000219891				30	0	0	11	3	21.4286
ZSCAN16	0	genome.wustl.edu	37	6	28097700	28097700	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28097700	28097700	G	T	SNP	ZSCAN16	ENST00000340487	human	ensembl	74_37	+1	known	missense	c.1019	p.R340I	0.980	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN16	HGNC	ENSG00000196812				63	0	0	30	15	33.3333
GPX5	0	genome.wustl.edu	37	6	28499606	28499606	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28499606	28499606	G	A	SNP	GPX5	ENST00000412168	human	ensembl	74_37	+1	known	missense	c.293	p.G98D	1.000	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	pfam_Glutathione_peroxidase,superfamily_Thioredoxin-like_fold,pirsf_Glutathione_peroxidase,prints_Glutathione_peroxidase	-	no_errors	GPX5	HGNC	ENSG00000224586				309	0	0	180	92	33.8235
SCAND3	0	genome.wustl.edu	37	6	28540442	28540442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28540442	28540442	C	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.3224	p.R1075Q	1.000	superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				113	0	0	69	33	32.3529
SCAND3	0	genome.wustl.edu	37	6	28541080	28541080	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28541080	28541080	C	A	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.2586	p.K862N	0.996	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				226	0	0	107	62	36.6864
SCAND3	0	genome.wustl.edu	37	6	28541478	28541478	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	28541478	28541478	G	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.2188	p.H730N	0.860	NULL	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				44	0	0	39	16	29.0909
OR2B3	0	genome.wustl.edu	37	6	29054810	29054810	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29054810	29054810	G	A	SNP	OR2B3	ENST00000377173	human	ensembl	74_37	-1	known	silent	c.216	p.C72	0.008	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B3	HGNC	ENSG00000204703				145	0	0	99	6	5.71429
OR11A1	0	genome.wustl.edu	37	6	29394947	29394947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29394947	29394947	C	T	SNP	OR11A1	ENST00000377147	human	ensembl	74_37	-1	known	missense	c.472	p.G158R	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR11A1	HGNC	ENSG00000204694				85	0	0	39	34	46.5753
OR10C1	0	genome.wustl.edu	37	6	29408578	29408578	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29408578	29408578	G	A	SNP	OR10C1	ENST00000444197	human	ensembl	74_37	+1	known	silent	c.786	p.K262	0.169	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR10C1	HGNC	ENSG00000206474				376	0	0	200	91	31.2715
MAS1L	0	genome.wustl.edu	37	6	29455512	29455512	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29455512	29455512	C	A	SNP	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	silent	c.168	p.T56	0.000	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687				102	0	0	54	27	33.3333
SERPINB6	0	genome.wustl.edu	37	6	2948628	2948628	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	2948628	2948628	G	A	SNP	SERPINB6	ENST00000335686	human	ensembl	74_37	-1	known	silent	c.1035	p.F345	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570				82	0	0	59	24	28.9157
SNORD32B	0	genome.wustl.edu	37	6	29550043	29550043	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29550043	29550043	A	G	SNP	SNORD32B	ENST00000364460	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	SNORD32B	HGNC	ENSG00000201330				80	0	0	39	14	26.4151
OR2H2	0	genome.wustl.edu	37	6	29556646	29556646	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	29556646	29556646	C	T	SNP	OR2H2	ENST00000383640	human	ensembl	74_37	+1	known	missense	c.925	p.L309F	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2H2	HGNC	ENSG00000204657				72	0	0	48	18	27.2727
TRIM10	0	genome.wustl.edu	37	6	30121843	30121843	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30121843	30121843	C	T	SNP	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	missense	c.1349	p.R450Q	0.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613				90	0	0	55	28	33.7349
RPP21	0	genome.wustl.edu	37	6	30314232	30314232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30314232	30314232	G	A	SNP	RPP21	ENST00000428040	human	ensembl	74_37	+1	known	missense	c.334	p.V112I	0.986	pfam_Rpr2	pfam_Rpr2	-	no_errors	RPP21	HGNC	ENSG00000241370				97	0	0	52	24	31.5789
HLA-E	0	genome.wustl.edu	37	6	30458020	30458020	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30458020	30458020	C	A	SNP	HLA-E	ENST00000376630	human	ensembl	74_37	+1	known	missense	c.338	p.S113Y	0.327	pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_CD80_C2-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-E	HGNC	ENSG00000204592				87	0	0	40	18	31.0345
PPP1R10	0	genome.wustl.edu	37	6	30577694	30577694	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30577694	30577694	C	A	SNP	PPP1R10	ENST00000376511	human	ensembl	74_37	-1	known	nonsense	c.28	p.E10*	1.000	NULL	pfam_TFIIS_N,pfam_Znf_CCCH,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,smart_Znf_CCCH	-	no_errors	PPP1R10	HGNC	ENSG00000204569				123	0	0	50	27	35.0649
PPP1R18	0	genome.wustl.edu	37	6	30644983	30644983	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30644983	30644983	T	G	SNP	PPP1R18	ENST00000467662	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.804	-	-	-	no_errors	PPP1R18	HGNC	ENSG00000146112				68	0	0	25	12	32.4324
MDC1	0	genome.wustl.edu	37	6	30673264	30673264	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30673264	30673264	T	G	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.3696	p.K1232N	0.015	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337				420	0	0	219	130	37.2493
DDR1	0	genome.wustl.edu	37	6	30863249	30863249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30863249	30863249	G	A	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.1582	p.G528S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				306	1	0.325733	135	78	36.6197
VARS2	0	genome.wustl.edu	37	6	30884684	30884684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	30884684	30884684	G	A	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	missense	c.791	p.R264Q	0.401	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411				209	0	0	83	49	37.1212
CCHCR1	0	genome.wustl.edu	37	6	31125291	31125291	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	31125291	31125291	A	G	SNP	CCHCR1	ENST00000396268	human	ensembl	74_37	-1	known	silent	c.87	p.D29	0.924	NULL	pfam_HCR	-	no_errors	CCHCR1	HGNC	ENSG00000204536				72	0	0	49	5	9.25926
HCP5	0	genome.wustl.edu	37	6	31431853	31431853	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	31431853	31431853	A	C	SNP	HCP5	ENST00000414046	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.072	-	-	-	no_errors	HCP5	HGNC	ENSG00000206337				146	0	0	72	25	25.7732
ATP6V1G2	0	genome.wustl.edu	37	6	31514407	31514407	+	Splice_Site	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	31514407	31514407	A	G	SNP	ATP6V1G2	ENST00000483251	human	ensembl	74_37	-1	known	splice_site	c.1+2	e0+2	0.000	-	-	-	no_errors	ATP6V1G2	HGNC	ENSG00000213760				35	0	0	18	12	40
C2	0	genome.wustl.edu	37	6	31901481	31901481	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	31901481	31901481	G	A	SNP	C2	ENST00000411571	human	ensembl	74_37	+1	known	missense	c.32	p.R11Q	0.000	NULL	NULL	-	no_errors	C2	HGNC	ENSG00000166278				108	0	0	54	26	32.5
TNXB	0	genome.wustl.edu	37	6	32036213	32036213	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32036213	32036213	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.6174	p.F2058	0.947	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				85	0	0	43	15	25.8621
TNXB	0	genome.wustl.edu	37	6	32047025	32047025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32047025	32047025	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.4160	p.S1387L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				215	1	0.462963	80	40	33.3333
TNXB	0	genome.wustl.edu	37	6	32065029	32065029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32065029	32065029	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.601	p.R201C	0.996	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				37	0	0	17	8	32
PPT2	0	genome.wustl.edu	37	6	32130710	32130710	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32130710	32130710	G	T	SNP	PPT2	ENST00000361568	human	ensembl	74_37	+1	known	nonsense	c.910	p.E304*	1.000	NULL	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT2	HGNC	ENSG00000221988				316	0	0	173	78	31.0757
AGER	0	genome.wustl.edu	37	6	32150740	32150740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32150740	32150740	G	A	SNP	AGER	ENST00000375070	human	ensembl	74_37	-1	known	missense	c.662	p.S221L	0.558	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AGER	HGNC	ENSG00000204305				122	0	0	54	32	37.2093
C6orf10	0	genome.wustl.edu	37	6	32307386	32307386	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	32307386	32307386	C	A	SNP	C6orf10	ENST00000447241	human	ensembl	74_37	-1	known	nonsense	c.379	p.E127*	0.013	NULL	NULL	-	no_errors	C6orf10	HGNC	ENSG00000204296				135	0	0	126	51	28.8136
COL11A2	0	genome.wustl.edu	37	6	33132248	33132248	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	33132248	33132248	G	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.4866	p.F1622L	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				8	0	0	3	3	50
RGL2	0	genome.wustl.edu	37	6	33260034	33260034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	33260034	33260034	C	T	SNP	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	missense	c.2179	p.D727N	0.997	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				155	0	0	68	26	27.6596
DAXX	0	genome.wustl.edu	37	6	33287518	33287518	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	33287518	33287518	T	C	SNP	DAXX	ENST00000266000	human	ensembl	74_37	-1	known	missense	c.1579	p.I527V	0.000	pfam_Daxx	pfam_Daxx	-	no_errors	DAXX	HGNC	ENSG00000204209				141	0	0	71	37	34.2593
ZBTB9	0	genome.wustl.edu	37	6	33423510	33423510	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	33423510	33423510	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	74_37	+1	known	silent	c.633	p.V211	0.466	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588				125	0	0	70	35	33.3333
C6orf1	0	genome.wustl.edu	37	6	34214882	34214882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	34214882	34214882	T	C	SNP	C6orf1	ENST00000394990	human	ensembl	74_37	-1	known	missense	c.64	p.T22A	0.990	NULL	NULL	-	no_errors	C6orf1	HGNC	ENSG00000186577				235	1	0.423729	106	41	27.8912
UHRF1BP1	0	genome.wustl.edu	37	6	34802027	34802027	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	34802027	34802027	G	A	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	silent	c.372	p.G124	0.768	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				54	0	0	35	14	28.5714
UHRF1BP1	0	genome.wustl.edu	37	6	34840168	34840168	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	34840168	34840168	A	C	SNP	UHRF1BP1	ENST00000192788	human	ensembl	74_37	+1	known	missense	c.4276	p.K1426Q	0.873	NULL	NULL	-	no_errors	UHRF1BP1	HGNC	ENSG00000065060				87	0	0	54	23	29.8701
ANKS1A	0	genome.wustl.edu	37	6	34953007	34953007	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	34953007	34953007	G	A	SNP	ANKS1A	ENST00000360359	human	ensembl	74_37	+1	known	silent	c.1161	p.T387	0.233	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1A	HGNC	ENSG00000064999				123	0	0	65	20	23.5294
DUSP22	0	genome.wustl.edu	37	6	350871	350871	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	350871	350871	T	C	SNP	DUSP22	ENST00000604988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.107	-	-	-	no_errors	DUSP22	HGNC	ENSG00000112679				130	0	0	96	13	11.9266
SCUBE3	0	genome.wustl.edu	37	6	35213122	35213122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	35213122	35213122	G	A	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	missense	c.2567	p.R856H	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				126	0	0	96	12	11.1111
FKBP5	0	genome.wustl.edu	37	6	35547912	35547912	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	35547912	35547912	C	T	SNP	FKBP5	ENST00000357266	human	ensembl	74_37	-1	known	silent	c.927	p.S309	0.001	NULL	pfam_PPIase_FKBP_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP5	HGNC	ENSG00000096060				189	0	0	99	52	34.4371
C6orf222	0	genome.wustl.edu	37	6	36288974	36288974	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	36288974	36288974	A	C	SNP	C6orf222	ENST00000437635	human	ensembl	74_37	-1	known	silent	c.1626	p.L542	0.965	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325				17	0	0	8	6	42.8571
C6orf222	0	genome.wustl.edu	37	6	36298001	36298001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	36298001	36298001	C	T	SNP	C6orf222	ENST00000437635	human	ensembl	74_37	-1	known	missense	c.467	p.R156H	0.358	NULL	NULL	-	no_errors	C6orf222	HGNC	ENSG00000189325				142	0	0	63	28	30.7692
CPNE5	0	genome.wustl.edu	37	6	36767773	36767773	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	36767773	36767773	G	A	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	silent	c.258	p.F86	0.983	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				66	0	0	27	15	35.7143
MTCH1	0	genome.wustl.edu	37	6	36938221	36938221	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	36938221	36938221	A	G	SNP	MTCH1	ENST00000373627	human	ensembl	74_37	-1	known	missense	c.983	p.F328S	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	MTCH1	HGNC	ENSG00000137409				105	0	0	51	26	33.7662
DNAH8	0	genome.wustl.edu	37	6	38691194	38691194	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	38691194	38691194	A	C	SNP	DNAH8	ENST00000449981	human	ensembl	74_37	+1	known	missense	c.472	p.N158H	0.005	NULL	pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				145	0	0	119	55	31.6092
DNAH8	0	genome.wustl.edu	37	6	38818056	38818056	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	38818056	38818056	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	missense	c.4578	p.K1526N	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				96	0	0	99	8	7.47664
LOC100131047	0	genome.wustl.edu	37	6	38897275	38897275	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	38897275	38897275	C	T	SNP	LOC100131047	ENST00000453417	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP1-207H1.3	Clone_based_vega_gene	ENSG00000231150				122	0	0	88	40	31.25
DNAH8	0	genome.wustl.edu	37	6	38994321	38994321	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	38994321	38994321	G	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	splice_site	c.13064-1	e88-1	1.000	-	-	-	no_errors	DNAH8	HGNC	ENSG00000124721				89	0	0	44	12	21.4286
GLP1R	0	genome.wustl.edu	37	6	39046914	39046914	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	39046914	39046914	C	A	SNP	GLP1R	ENST00000373256	human	ensembl	74_37	+1	known	silent	c.981	p.V327	0.995	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GLP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_GLP1/glucagon_rcpt,prints_GPCR_2_GIP_rcpt	-	no_errors	GLP1R	HGNC	ENSG00000112164				195	0	0	102	63	38.1818
IRF4	0	genome.wustl.edu	37	6	393249	393249	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	393249	393249	G	A	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	missense	c.97	p.D33N	1.000	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				20	0	0	10	3	23.0769
LRFN2	0	genome.wustl.edu	37	6	40359708	40359708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	40359708	40359708	C	T	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.2344	p.E782K	0.998	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564				90	0	0	51	32	38.5542
FAM217A	0	genome.wustl.edu	37	6	4069760	4069760	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	4069760	4069760	T	G	SNP	FAM217A	ENST00000274673	human	ensembl	74_37	-1	known	missense	c.697	p.N233H	0.646	NULL	NULL	-	no_errors	FAM217A	HGNC	ENSG00000145975				132	0	0	118	10	7.8125
BYSL	0	genome.wustl.edu	37	6	41898422	41898422	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	41898422	41898422	T	C	SNP	BYSL	ENST00000230340	human	ensembl	74_37	+1	known	missense	c.620	p.I207T	1.000	pfam_Bystin	pfam_Bystin	-	no_errors	BYSL	HGNC	ENSG00000112578				95	0	0	52	8	13.3333
PRPH2	0	genome.wustl.edu	37	6	42666207	42666207	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	42666207	42666207	C	T	SNP	PRPH2	ENST00000230381	human	ensembl	74_37	-1	known	silent	c.867	p.S289	0.072	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	PRPH2	HGNC	ENSG00000112619				95	0	0	65	22	25.2874
GNMT	0	genome.wustl.edu	37	6	42931424	42931424	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	42931424	42931424	G	A	SNP	GNMT	ENST00000372808	human	ensembl	74_37	+1	known	missense	c.868	p.V290M	1.000	pirsf_Gly/Sar_N_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pirsf_Gly/Sar_N_MeTrfase	-	no_errors	GNMT	HGNC	ENSG00000124713				90	0	0	38	21	35.5932
MRPL2	0	genome.wustl.edu	37	6	43024071	43024071	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43024071	43024071	A	C	SNP	MRPL2	ENST00000388752	human	ensembl	74_37	-1	known	silent	c.378	p.V126	0.021	pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_NA-bd_OB-fold	pfam_Ribosomal_L2_C,pfam_Rbsml_prot_L2_RNA-bd_dom,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold	-	no_errors	MRPL2	HGNC	ENSG00000112651				153	0	0	57	31	35.2273
CUL9	0	genome.wustl.edu	37	6	43156447	43156447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43156447	43156447	C	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.2174	p.S725L	0.097	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				81	0	0	33	16	32.6531
CUL9	0	genome.wustl.edu	37	6	43166427	43166427	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43166427	43166427	G	T	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	nonsense	c.2884	p.E962*	0.858	superfamily_ARM-type_fold	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				309	0	0	152	70	31.5315
ZNF318	0	genome.wustl.edu	37	6	43306479	43306479	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43306479	43306479	C	A	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	nonsense	c.5257	p.E1753*	0.014	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				161	0	0	88	47	34.8148
ZNF318	0	genome.wustl.edu	37	6	43323460	43323460	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43323460	43323460	G	T	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	missense	c.1612	p.L538I	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				455	0	0	228	136	37.3626
ZNF318	0	genome.wustl.edu	37	6	43323494	43323494	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43323494	43323494	A	G	SNP	ZNF318	ENST00000361428	human	ensembl	74_37	-1	known	silent	c.1578	p.R526	0.996	NULL	smart_Znf_U1	-	no_errors	ZNF318	HGNC	ENSG00000171467				479	0	0	268	139	34.1523
ABCC10	0	genome.wustl.edu	37	6	43400462	43400462	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43400462	43400462	C	T	SNP	ABCC10	ENST00000372530	human	ensembl	74_37	+1	known	silent	c.744	p.C248	0.947	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC10	HGNC	ENSG00000124574				122	0	0	56	32	36.3636
GTPBP2	0	genome.wustl.edu	37	6	43592340	43592340	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	43592340	43592340	A	G	SNP	GTPBP2	ENST00000307126	human	ensembl	74_37	-1	known	missense	c.1007	p.V336A	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP2	HGNC	ENSG00000172432				95	0	0	50	24	32.4324
TMEM63B	0	genome.wustl.edu	37	6	44103088	44103088	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	44103088	44103088	G	A	SNP	TMEM63B	ENST00000259746	human	ensembl	74_37	+1	known	missense	c.263	p.R88Q	1.000	NULL	pfam_DUF221	-	no_errors	TMEM63B	HGNC	ENSG00000137216				47	0	0	14	9	39.1304
TCTE1	0	genome.wustl.edu	37	6	44250104	44250104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	44250104	44250104	G	A	SNP	TCTE1	ENST00000371505	human	ensembl	74_37	-1	known	missense	c.1039	p.R347C	0.990	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	TCTE1	HGNC	ENSG00000146221				201	0	0	101	52	33.9869
CDC5L	0	genome.wustl.edu	37	6	44360556	44360556	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	44360556	44360556	A	C	SNP	CDC5L	ENST00000371477	human	ensembl	74_37	+1	known	missense	c.302	p.E101A	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DUF3351,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	CDC5L	HGNC	ENSG00000096401				69	0	0	38	11	22.449
RUNX2	0	genome.wustl.edu	37	6	45296101	45296101	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	45296101	45296101	C	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	silent	c.42	p.C14	1.000	NULL	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				69	0	0	49	23	31.9444
CLIC5	0	genome.wustl.edu	37	6	45870729	45870729	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	45870729	45870729	C	T	SNP	CLIC5	ENST00000487396	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLIC5	HGNC	ENSG00000112782				45	0	0	26	13	33.3333
SLC25A27	0	genome.wustl.edu	37	6	46630234	46630234	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46630234	46630234	C	T	SNP	SLC25A27	ENST00000371347	human	ensembl	74_37	+1	known	nonsense	c.505	p.R169*	0.918	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A27	HGNC	ENSG00000153291				83	0	0	52	21	28.7671
TDRD6	0	genome.wustl.edu	37	6	46657305	46657305	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46657305	46657305	T	G	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.1440	p.S480	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				135	0	0	89	45	33.5821
PLA2G7	0	genome.wustl.edu	37	6	46677131	46677131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46677131	46677131	C	T	SNP	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	missense	c.802	p.A268T	1.000	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				101	0	0	74	29	28.1553
MEP1A	0	genome.wustl.edu	37	6	46803248	46803248	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46803248	46803248	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	silent	c.2046	p.D682	0.349	pirsf_Pept_M12A_Meprin,pfam_EG-like_dom,pfscan_EG-like_dom	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				40	0	0	27	5	15.625
GPR116	0	genome.wustl.edu	37	6	46821800	46821800	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46821800	46821800	T	G	SNP	GPR116	ENST00000265417	human	ensembl	74_37	-1	known	missense	c.3970	p.N1324H	0.998	prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,pfscan_Ig-like_dom,prints_GPCR_2_Ig-hepta_rcpt,prints_GPCR_2_secretin-like	-	no_errors	GPR116	HGNC	ENSG00000069122				108	0	0	53	34	39.0805
GPR110	0	genome.wustl.edu	37	6	46996794	46996794	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46996794	46996794	T	G	SNP	GPR110	ENST00000371253	human	ensembl	74_37	-1	known	missense	c.4	p.K2Q	0.679	NULL	pfam_GPCR_2_secretin-like,pfam_SEA_dom,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292				71	0	0	57	24	29.6296
MUT	0	genome.wustl.edu	37	6	49419394	49419394	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	49419394	49419394	C	A	SNP	MUT	ENST00000274813	human	ensembl	74_37	-1	known	nonsense	c.1117	p.E373*	1.000	pfam_MeMalonylCoA_mutase_a/b_cat,superfamily_Cbl-dep_enz_cat,tigrfam_MMCoA_mutase_a_cat	pfam_MeMalonylCoA_mutase_a/b_cat,pfam_Cobalamin-bd,superfamily_Cbl-dep_enz_cat,superfamily_Cobalamin-bd,tigrfam_MMCoA_mutase_a_cat,tigrfam_Acid_CoA_mut_C	-	no_errors	MUT	HGNC	ENSG00000146085				74	0	0	39	25	39.0625
CDYL	0	genome.wustl.edu	37	6	4954278	4954278	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	4954278	4954278	C	T	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	silent	c.1785	p.I595	0.364	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046				58	0	0	35	8	18.6047
TFAP2D	0	genome.wustl.edu	37	6	50696595	50696595	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	50696595	50696595	G	T	SNP	TFAP2D	ENST00000008391	human	ensembl	74_37	+1	known	missense	c.625	p.D209Y	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197				112	0	0	65	26	28.5714
TFAP2B	0	genome.wustl.edu	37	6	50796360	50796360	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	50796360	50796360	T	C	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	missense	c.596	p.M199T	1.000	prints_TF_AP2_beta	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				83	0	0	78	40	33.8983
TFAP2B	0	genome.wustl.edu	37	6	50810818	50810818	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	50810818	50810818	G	T	SNP	TFAP2B	ENST00000263046	human	ensembl	74_37	+1	known	nonsense	c.1123	p.E375*	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_beta,prints_TF_AP2_C	-	no_errors	TFAP2B	HGNC	ENSG00000008196				220	0	0	66	121	64.7059
LYRM4	0	genome.wustl.edu	37	6	5109631	5109631	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	5109631	5109631	G	A	SNP	LYRM4	ENST00000458438	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.038	-	-	-	no_errors	LYRM4	HGNC	ENSG00000214113				150	0	0	74	28	27.451
PKHD1	0	genome.wustl.edu	37	6	51524753	51524753	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	51524753	51524753	C	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	nonsense	c.10171	p.E3391*	1.000	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				57	0	0	26	17	39.5349
PKHD1	0	genome.wustl.edu	37	6	51612618	51612618	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	51612618	51612618	C	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.9796	p.D3266Y	0.000	NULL	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				122	0	0	78	35	30.9735
PKHD1	0	genome.wustl.edu	37	6	51613035	51613035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	51613035	51613035	G	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.9379	p.L3127F	0.995	superfamily_Pectin_lyase_fold/virulence	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				400	0	0	250	116	31.694
PKHD1	0	genome.wustl.edu	37	6	51747971	51747971	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	51747971	51747971	C	A	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.7270	p.D2424Y	1.000	superfamily_Pectin_lyase_fold/virulence,smart_PbH1	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				59	0	0	30	21	41.1765
PKHD1	0	genome.wustl.edu	37	6	51892664	51892664	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	51892664	51892664	T	G	SNP	PKHD1	ENST00000371117	human	ensembl	74_37	-1	known	missense	c.3591	p.E1197D	0.998	superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,smart_IPT,smart_PbH1	-	no_errors	PKHD1	HGNC	ENSG00000170927				56	0	0	49	29	37.1795
PAQR8	0	genome.wustl.edu	37	6	52268312	52268312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	52268312	52268312	G	A	SNP	PAQR8	ENST00000360726	human	ensembl	74_37	+1	known	missense	c.301	p.A101T	1.000	pfam_HlyIII-related	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915				142	0	0	80	33	29.2035
GSTA5	0	genome.wustl.edu	37	6	52702399	52702399	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	52702399	52702399	C	A	SNP	GSTA5	ENST00000284562	human	ensembl	74_37	-1	known	missense	c.96	p.E32D	0.059	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_alpha	-	no_errors	GSTA5	HGNC	ENSG00000182793				67	0	0	50	19	27.5362
ICK	0	genome.wustl.edu	37	6	52897353	52897353	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	52897353	52897353	G	T	SNP	ICK	ENST00000350082	human	ensembl	74_37	-1	known	missense	c.256	p.L86I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ICK	HGNC	ENSG00000112144				35	0	0	18	17	48.5714
FBXO9	0	genome.wustl.edu	37	6	52960345	52960345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	52960345	52960345	G	A	SNP	FBXO9	ENST00000244426	human	ensembl	74_37	+1	known	missense	c.1118	p.R373H	1.000	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO9	HGNC	ENSG00000112146				46	0	0	23	17	42.5
LRRC1	0	genome.wustl.edu	37	6	53767437	53767437	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	53767437	53767437	G	T	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	missense	c.798	p.K266N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				104	0	0	59	24	28.9157
LRRC1	0	genome.wustl.edu	37	6	53785469	53785469	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	53785469	53785469	C	A	SNP	LRRC1	ENST00000370888	human	ensembl	74_37	+1	known	silent	c.1326	p.V442	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC1	HGNC	ENSG00000137269				91	0	0	54	33	37.931
MLIP	0	genome.wustl.edu	37	6	53989606	53989606	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	53989606	53989606	G	T	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	missense	c.555	p.K185N	0.048	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147				86	0	0	47	20	29.8507
TINAG	0	genome.wustl.edu	37	6	54214548	54214548	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	54214548	54214548	G	T	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	missense	c.934	p.D312Y	0.923	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				152	0	0	80	37	31.6239
TINAG	0	genome.wustl.edu	37	6	54219400	54219400	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	54219400	54219400	C	T	SNP	TINAG	ENST00000259782	human	ensembl	74_37	+1	known	nonsense	c.1216	p.R406*	0.105	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Somatomedin_B_dom,smart_Somatomedin_B_dom,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAG	HGNC	ENSG00000137251				59	0	0	34	23	40.3509
HCRTR2	0	genome.wustl.edu	37	6	55145214	55145214	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	55145214	55145214	G	A	SNP	HCRTR2	ENST00000370862	human	ensembl	74_37	+1	known	silent	c.1077	p.A359	0.989	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_Orexin_rcpt_2,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Orexin_rcpt,prints_GPCR_Rhodpsn,prints_Orexin_rcpt_2,prints_NPY_rcpt	-	no_errors	HCRTR2	HGNC	ENSG00000137252				73	0	0	63	38	37.6238
BMP5	0	genome.wustl.edu	37	6	55659124	55659124	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	55659124	55659124	T	G	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	missense	c.785	p.N262T	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				98	0	0	68	31	31.3131
DST	0	genome.wustl.edu	37	6	56325025	56325025	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56325025	56325025	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	nonsense	c.22894	p.R7632*	0.997	NULL	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				64	0	0	38	16	29.6296
DST	0	genome.wustl.edu	37	6	56354333	56354333	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56354333	56354333	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.20739	p.I6913	0.005	pfam_Spectrin_repeat,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				121	0	0	87	33	27.5
DST	0	genome.wustl.edu	37	6	56469525	56469525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56469525	56469525	C	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.9802	p.D3268Y	0.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				156	0	0	88	38	30.1587
DST	0	genome.wustl.edu	37	6	56480649	56480649	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56480649	56480649	A	G	SNP	DST	ENST00000370765	human	ensembl	74_37	-1	known	missense	c.7616	p.V2539A	0.933	smart_Plectin_repeat	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914				150	0	0	96	45	31.9149
DST	0	genome.wustl.edu	37	6	56499282	56499282	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56499282	56499282	C	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	nonsense	c.3373	p.E1125*	1.000	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				82	0	0	79	6	7.05882
ZNF451	0	genome.wustl.edu	37	6	56963933	56963933	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56963933	56963933	T	C	SNP	ZNF451	ENST00000502749	human	ensembl	74_37	+1	known	missense	c.158	p.I53T	0.536	NULL	NULL	-	no_errors	ZNF451	HGNC	ENSG00000112200				32	0	0	25	14	35.8974
ZNF451	0	genome.wustl.edu	37	6	56997971	56997971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	56997971	56997971	C	T	SNP	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	missense	c.556	p.L186F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				115	0	0	85	23	21.2963
RAB23	0	genome.wustl.edu	37	6	57061318	57061318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	57061318	57061318	C	T	SNP	RAB23	ENST00000317483	human	ensembl	74_37	-1	known	missense	c.328	p.E110K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB23	HGNC	ENSG00000112210				118	0	0	71	46	39.3162
PRIM2	0	genome.wustl.edu	37	6	57467169	57467169	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	57467169	57467169	T	G	SNP	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143				152	0	0	109	17	13.4921
PRIM2	0	genome.wustl.edu	37	6	57472420	57472420	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	57472420	57472420	C	A	SNP	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.076	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143				74	0	0	52	7	11.8644
EXOC2	0	genome.wustl.edu	37	6	598085	598085	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	598085	598085	C	A	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	nonsense	c.1009	p.E337*	1.000	superfamily_Cullin_repeat-like_dom	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				23	0	0	29	12	29.2683
F13A1	0	genome.wustl.edu	37	6	6167838	6167838	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	6167838	6167838	C	T	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	silent	c.1761	p.A587	0.985	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				60	0	0	32	11	25.5814
F13A1	0	genome.wustl.edu	37	6	6225075	6225075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	6225075	6225075	C	T	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.817	p.E273K	0.864	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				104	0	0	70	30	30
ENSG00000250686	0	genome.wustl.edu	37	6	62390848	62390848	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	62390848	62390848	G	A	SNP	ENSG00000250686	ENST00000511849	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP1-240B8.3	Clone_based_vega_gene	ENSG00000250686				45	0	0	16	15	48.3871
EXOC2	0	genome.wustl.edu	37	6	637805	637805	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	637805	637805	C	T	SNP	EXOC2	ENST00000230449	human	ensembl	74_37	-1	known	missense	c.14	p.R5Q	0.999	superfamily_Ig_E-set	pfam_IPT,superfamily_Ig_E-set,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC2	HGNC	ENSG00000112685				170	0	0	99	32	24.4275
PHF3	0	genome.wustl.edu	37	6	64395212	64395212	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	64395212	64395212	G	A	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	missense	c.1589	p.R530Q	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				71	0	0	48	21	30.4348
PHF3	0	genome.wustl.edu	37	6	64395712	64395712	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	64395712	64395712	A	C	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	missense	c.2089	p.I697L	0.498	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				115	0	0	84	39	31.7073
ENSG00000243828	0	genome.wustl.edu	37	6	65443350	65443350	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	65443350	65443350	G	T	SNP	ENSG00000243828	ENST00000421170	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-307F22.2	Clone_based_vega_gene	ENSG00000243828				10	0	0	7	7	50
BAI3	0	genome.wustl.edu	37	6	69666665	69666665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	69666665	69666665	G	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.1489	p.E497K	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				111	0	0	72	22	23.4043
LMBRD1	0	genome.wustl.edu	37	6	70407530	70407530	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	70407530	70407530	T	C	SNP	LMBRD1	ENST00000370577	human	ensembl	74_37	-1	known	missense	c.1342	p.N448D	0.997	NULL	pfam_LMBR1-like_membr_prot	-	no_errors	LMBRD1	HGNC	ENSG00000168216				64	0	0	47	21	30.8824
COL9A1	0	genome.wustl.edu	37	6	70962997	70962997	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	70962997	70962997	A	G	SNP	COL9A1	ENST00000447041	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.030	-	-	-	no_errors	COL9A1	HGNC	ENSG00000112280				10	0	0	11	9	45
COL9A1	0	genome.wustl.edu	37	6	71009840	71009840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	71009840	71009840	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.205	p.A69T	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				65	0	0	49	23	31.9444
FAM135A	0	genome.wustl.edu	37	6	71235543	71235543	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	71235543	71235543	A	C	SNP	FAM135A	ENST00000418814	human	ensembl	74_37	+1	known	missense	c.2756	p.D919A	1.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like,pfam_LACT/PDAT_acylTrfase	-	no_errors	FAM135A	HGNC	ENSG00000082269				84	0	0	67	33	33
RIMS1	0	genome.wustl.edu	37	6	72975748	72975748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	72975748	72975748	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.3394	p.E1132K	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				9	0	0	5	3	37.5
RIMS1	0	genome.wustl.edu	37	6	73108789	73108789	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	73108789	73108789	T	C	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4853	p.V1618A	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				69	0	0	45	32	41.5584
CAGE1	0	genome.wustl.edu	37	6	7373574	7373574	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	7373574	7373574	T	G	SNP	CAGE1	ENST00000338150	human	ensembl	74_37	-1	known	missense	c.1478	p.K493T	0.599	NULL	NULL	-	no_errors	CAGE1	HGNC	ENSG00000164304				44	0	0	27	9	25
KCNQ5	0	genome.wustl.edu	37	6	73843259	73843259	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	73843259	73843259	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.1393	p.E465K	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				140	0	0	77	42	35.2941
RIOK1	0	genome.wustl.edu	37	6	7405486	7405486	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	7405486	7405486	C	A	SNP	RIOK1	ENST00000379834	human	ensembl	74_37	+1	known	missense	c.1101	p.F367L	1.000	pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784				46	0	0	38	17	30.9091
RIOK1	0	genome.wustl.edu	37	6	7411600	7411600	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	7411600	7411600	T	C	SNP	RIOK1	ENST00000379834	human	ensembl	74_37	+1	known	silent	c.1305	p.N435	0.990	pirsf_Ser/Thr_kinase_Rio1	pfam_RIO-like_kinase,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio1	-	no_errors	RIOK1	HGNC	ENSG00000124784				109	0	0	64	37	36.6337
MB21D1	0	genome.wustl.edu	37	6	74138502	74138502	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	74138502	74138502	C	T	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	missense	c.1147	p.E383K	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D1	HGNC	ENSG00000164430				63	0	0	33	12	26.6667
MTO1	0	genome.wustl.edu	37	6	74191931	74191931	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	74191931	74191931	C	T	SNP	MTO1	ENST00000415954	human	ensembl	74_37	+1	known	missense	c.1549	p.R517C	1.000	NULL	pfam_GIDA-rel,pfam_FAD_bind_dom,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_GidA	-	no_errors	MTO1	HGNC	ENSG00000135297				91	0	0	55	15	21.4286
CD109	0	genome.wustl.edu	37	6	74530184	74530184	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	74530184	74530184	G	A	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	splice_site	c.4060-1	e32-1	1.000	-	-	-	no_errors	CD109	HGNC	ENSG00000156535				46	0	0	31	16	34.0426
DSP	0	genome.wustl.edu	37	6	7575554	7575554	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	7575554	7575554	G	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.2463	p.K821N	1.000	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				151	0	0	90	38	29.6875
DSP	0	genome.wustl.edu	37	6	7584004	7584004	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	7584004	7584004	A	C	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	missense	c.6509	p.K2170T	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				126	0	0	73	32	30.4762
COL12A1	0	genome.wustl.edu	37	6	75841699	75841699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	75841699	75841699	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.5894	p.R1965H	0.878	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				99	0	0	50	26	34.2105
COL12A1	0	genome.wustl.edu	37	6	75848567	75848567	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	75848567	75848567	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.5068	p.A1690T	0.980	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				103	0	0	76	35	31.5315
COL12A1	0	genome.wustl.edu	37	6	75890799	75890799	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	75890799	75890799	C	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	nonsense	c.2020	p.E674*	0.486	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				126	0	0	62	44	41.5094
COL12A1	0	genome.wustl.edu	37	6	75893216	75893216	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	75893216	75893216	G	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.1441	p.L481I	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				116	0	0	76	34	30.9091
FILIP1	0	genome.wustl.edu	37	6	76018411	76018411	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76018411	76018411	C	T	SNP	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	missense	c.3638	p.G1213D	1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				220	0	0	135	57	29.6875
MYO6	0	genome.wustl.edu	37	6	76551007	76551007	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76551007	76551007	G	T	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.728	p.R243I	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				57	0	0	39	16	29.0909
MYO6	0	genome.wustl.edu	37	6	76551055	76551055	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76551055	76551055	T	C	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.776	p.I259T	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				50	0	0	38	14	26.9231
MYO6	0	genome.wustl.edu	37	6	76604947	76604947	+	Splice_Site	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76604947	76604947	G	T	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	splice_site	c.3138-1	e29-1	1.000	-	-	-	no_errors	MYO6	HGNC	ENSG00000196586				50	0	0	45	16	26.2295
IMPG1	0	genome.wustl.edu	37	6	76633355	76633355	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76633355	76633355	T	C	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.2312	p.N771S	0.999	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				18	0	0	27	9	25
IMPG1	0	genome.wustl.edu	37	6	76731854	76731854	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	76731854	76731854	G	A	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	silent	c.645	p.N215	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				85	0	0	50	21	29.5775
HTR1B	0	genome.wustl.edu	37	6	78173062	78173062	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	78173062	78173062	A	G	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	missense	c.59	p.V20A	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				147	0	0	66	37	35.9223
PHIP	0	genome.wustl.edu	37	6	79656535	79656535	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	79656535	79656535	A	C	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	silent	c.4263	p.V1421	1.000	superfamily_Bromodomain,smart_Bromodomain	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247				87	0	0	50	21	29.5775
PHIP	0	genome.wustl.edu	37	6	79665468	79665468	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	79665468	79665468	C	T	SNP	PHIP	ENST00000479165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PHIP	HGNC	ENSG00000146247				10	0	0	9	6	40
LCA5	0	genome.wustl.edu	37	6	80222985	80222985	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	80222985	80222985	C	T	SNP	LCA5	ENST00000369846	human	ensembl	74_37	-1	known	missense	c.664	p.A222T	1.000	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338				96	0	0	82	45	35.4331
LCA5	0	genome.wustl.edu	37	6	80223141	80223141	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	80223141	80223141	C	A	SNP	LCA5	ENST00000369846	human	ensembl	74_37	-1	known	missense	c.508	p.A170S	0.999	NULL	NULL	-	no_errors	LCA5	HGNC	ENSG00000135338				98	0	0	81	43	34.6774
TTK	0	genome.wustl.edu	37	6	80717654	80717654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	80717654	80717654	C	T	SNP	TTK	ENST00000369798	human	ensembl	74_37	+1	known	missense	c.268	p.R90C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				77	0	0	55	39	41.4894
FAM46A	0	genome.wustl.edu	37	6	82460081	82460081	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	82460081	82460081	A	G	SNP	FAM46A	ENST00000369754	human	ensembl	74_37	-1	known	silent	c.717	p.D239	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46A	HGNC	ENSG00000112773				78	0	0	55	29	34.5238
IBTK	0	genome.wustl.edu	37	6	82914599	82914599	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	82914599	82914599	A	C	SNP	IBTK	ENST00000306270	human	ensembl	74_37	-1	known	missense	c.2586	p.I862M	0.995	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				47	0	0	31	19	38
DOPEY1	0	genome.wustl.edu	37	6	83819957	83819957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	83819957	83819957	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.605	p.Y202C	1.000	pfam_Dopey_N,superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				228	1	0.436681	117	85	42.0792
DOPEY1	0	genome.wustl.edu	37	6	83862075	83862075	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	83862075	83862075	T	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.6118	p.L2040V	0.986	superfamily_ARM-type_fold	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097				31	0	0	25	4	13.7931
PGM3	0	genome.wustl.edu	37	6	83884180	83884180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	83884180	83884180	C	A	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.1155	p.M385I	0.033	pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				39	0	0	28	15	34.8837
PRSS35	0	genome.wustl.edu	37	6	84233365	84233365	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	84233365	84233365	G	T	SNP	PRSS35	ENST00000369700	human	ensembl	74_37	+1	known	nonsense	c.205	p.E69*	0.830	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS35	HGNC	ENSG00000146250				143	0	0	70	27	27.8351
PRSS35	0	genome.wustl.edu	37	6	84233890	84233890	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	84233890	84233890	G	A	SNP	PRSS35	ENST00000369700	human	ensembl	74_37	+1	known	missense	c.730	p.E244K	0.584	superfamily_Trypsin-like_Pept_dom	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	PRSS35	HGNC	ENSG00000146250				76	0	0	50	21	29.5775
CYB5R4	0	genome.wustl.edu	37	6	84618734	84618734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	84618734	84618734	C	T	SNP	CYB5R4	ENST00000369681	human	ensembl	74_37	+1	known	missense	c.337	p.R113C	1.000	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pfscan_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,pfam_CS_dom,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_Riboflavin_synthase-like_b-brl,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Cyt_B5-like_heme/steroid-bd,prints_NADH-Cyt_B5_reductase,prints_Cyt_B5-like_heme/steroid-bd	-	no_errors	CYB5R4	HGNC	ENSG00000065615				44	0	0	35	12	25.5319
SYNCRIP	0	genome.wustl.edu	37	6	86333812	86333812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	86333812	86333812	G	A	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.685	p.R229C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				61	0	0	49	21	30
SYNCRIP	0	genome.wustl.edu	37	6	86349994	86349994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	86349994	86349994	T	C	SNP	SYNCRIP	ENST00000369622	human	ensembl	74_37	-1	known	missense	c.320	p.K107R	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316				144	0	0	81	49	37.6923
HTR1E	0	genome.wustl.edu	37	6	87725558	87725558	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	87725558	87725558	C	T	SNP	HTR1E	ENST00000305344	human	ensembl	74_37	+1	known	missense	c.506	p.P169L	0.944	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR1E	HGNC	ENSG00000168830				154	0	0	83	34	29.0598
ZNF292	0	genome.wustl.edu	37	6	87967536	87967536	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	87967536	87967536	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	nonsense	c.4189	p.R1397*	1.000	pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				137	0	0	66	39	37.1429
ZNF292	0	genome.wustl.edu	37	6	87969690	87969690	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	87969690	87969690	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	nonsense	c.6343	p.R2115*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994				109	0	0	81	33	28.9474
C6orf165	0	genome.wustl.edu	37	6	88120335	88120335	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88120335	88120335	C	T	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	silent	c.141	p.G47	0.995	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				108	0	0	76	30	28.3019
C6orf165	0	genome.wustl.edu	37	6	88123615	88123615	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88123615	88123615	C	T	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	nonsense	c.280	p.R94*	1.000	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				51	0	0	41	30	42.2535
C6orf165	0	genome.wustl.edu	37	6	88126425	88126425	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88126425	88126425	A	G	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.511	p.T171A	0.695	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				45	0	0	20	11	35.4839
C6orf165	0	genome.wustl.edu	37	6	88170746	88170746	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88170746	88170746	G	A	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.1501	p.D501N	0.302	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				48	0	0	34	15	30.6122
C6orf165	0	genome.wustl.edu	37	6	88170802	88170802	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88170802	88170802	G	A	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	silent	c.1557	p.T519	0.518	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514				53	0	0	43	15	25.8621
RARS2	0	genome.wustl.edu	37	6	88231241	88231241	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88231241	88231241	C	A	SNP	RARS2	ENST00000369536	human	ensembl	74_37	-1	known	missense	c.976	p.D326Y	1.000	pfam_Arg-tRNA-synth_Ia_core,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	pfam_Arg-tRNA-synth_Ia_core,pfam_DALR_anticod-bd,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Arg-tRNA-synth_N,smart_DALR_anticod-bd,prints_Arg-tRNA-synth_Ia_core,tigrfam_Arg-tRNA-ligase_Ia	-	no_errors	RARS2	HGNC	ENSG00000146282				40	0	0	55	23	29.4872
AKIRIN2	0	genome.wustl.edu	37	6	88387650	88387650	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	88387650	88387650	C	A	SNP	AKIRIN2	ENST00000257787	human	ensembl	74_37	-1	known	nonsense	c.415	p.E139*	1.000	NULL	NULL	-	no_errors	AKIRIN2	HGNC	ENSG00000135334				114	0	0	55	39	41.4894
PNRC1	0	genome.wustl.edu	37	6	89790697	89790697	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	89790697	89790697	C	A	SNP	PNRC1	ENST00000336032	human	ensembl	74_37	+1	known	nonsense	c.84	p.Y28*	0.997	NULL	NULL	-	no_errors	PNRC1	HGNC	ENSG00000146278				64	0	0	50	9	15.2542
ANKRD6	0	genome.wustl.edu	37	6	90323556	90323556	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90323556	90323556	T	C	SNP	ANKRD6	ENST00000339746	human	ensembl	74_37	+1	known	missense	c.562	p.S188P	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD6	HGNC	ENSG00000135299				41	0	0	33	12	26.6667
MDN1	0	genome.wustl.edu	37	6	90361988	90361988	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90361988	90361988	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.15838	p.D5280Y	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				98	0	0	63	24	27.5862
MDN1	0	genome.wustl.edu	37	6	90434994	90434994	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90434994	90434994	A	C	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.5594	p.F1865C	1.000	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				162	0	0	79	38	32.4786
MDN1	0	genome.wustl.edu	37	6	90448144	90448144	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90448144	90448144	C	A	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	nonsense	c.4624	p.E1542*	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				120	0	0	67	34	33.6634
MDN1	0	genome.wustl.edu	37	6	90450000	90450000	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90450000	90450000	G	T	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.4546	p.R1516S	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				112	0	0	85	34	28.5714
CASP8AP2	0	genome.wustl.edu	37	6	90578381	90578381	+	RNA	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90578381	90578381	A	T	SNP	CASP8AP2	ENST00000237177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	CASP8AP2	HGNC	ENSG00000118412				51	0	0	44	17	27.8689
ENSG00000226455	0	genome.wustl.edu	37	6	90661652	90661652	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	90661652	90661652	G	T	SNP	ENSG00000226455	ENST00000413986	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	RP3-512E2.2	Clone_based_vega_gene	ENSG00000226455				23	0	0	9	9	50
MAP3K7	0	genome.wustl.edu	37	6	91229036	91229036	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	91229036	91229036	T	C	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.1465	p.T489A	1.000	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				57	0	0	38	20	34.4828
FHL5	0	genome.wustl.edu	37	6	97052727	97052727	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	97052727	97052727	C	T	SNP	FHL5	ENST00000326771	human	ensembl	74_37	+1	known	silent	c.261	p.R87	0.999	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	FHL5	HGNC	ENSG00000112214				143	0	0	69	40	36.6972
GPR63	0	genome.wustl.edu	37	6	97246403	97246403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	97246403	97246403	C	T	SNP	GPR63	ENST00000229955	human	ensembl	74_37	-1	known	missense	c.1205	p.R402Q	0.998	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218				119	0	0	57	33	36.6667
KLHL32	0	genome.wustl.edu	37	6	97424044	97424044	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	97424044	97424044	C	A	SNP	KLHL32	ENST00000369261	human	ensembl	74_37	+1	known	missense	c.195	p.D65E	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231				108	0	0	59	17	22.3684
KLHL32	0	genome.wustl.edu	37	6	97562324	97562324	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	97562324	97562324	C	A	SNP	KLHL32	ENST00000369261	human	ensembl	74_37	+1	known	silent	c.1293	p.S431	1.000	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL32	HGNC	ENSG00000186231				118	0	0	65	37	36.2745
FBXL4	0	genome.wustl.edu	37	6	99374803	99374803	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99374803	99374803	C	T	SNP	FBXL4	ENST00000229971	human	ensembl	74_37	-1	known	missense	c.62	p.R21H	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL4	HGNC	ENSG00000112234				219	0	0	108	71	39.6648
FAXC	0	genome.wustl.edu	37	6	99771429	99771429	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99771429	99771429	C	T	SNP	FAXC	ENST00000389677	human	ensembl	74_37	-1	known	silent	c.714	p.T238	0.995	superfamily_Glutathione-S-Trfase_C-like	superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	FAXC	HGNC	ENSG00000146267				65	0	0	27	16	37.2093
COQ3	0	genome.wustl.edu	37	6	99825356	99825356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99825356	99825356	T	C	SNP	COQ3	ENST00000254759	human	ensembl	74_37	-1	known	missense	c.392	p.N131S	1.000	tigrfam_UbiG_MeTrfase	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_Mycolic_cyclopropane_synthase,pfam_UbiE/COQ5_MeTrFase,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_SAM-MeTfrase_NodS-related,tigrfam_UbiG_MeTrfase	-	no_errors	COQ3	HGNC	ENSG00000132423				47	0	0	27	12	30.7692
PNISR	0	genome.wustl.edu	37	6	99852513	99852513	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99852513	99852513	G	A	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	silent	c.1068	p.Y356	0.107	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				54	0	0	41	19	31.6667
PNISR	0	genome.wustl.edu	37	6	99857253	99857253	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99857253	99857253	A	C	SNP	PNISR	ENST00000463021	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PNISR	HGNC	ENSG00000132424				25	0	0	23	16	41.0256
PNISR	0	genome.wustl.edu	37	6	99862453	99862453	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99862453	99862453	T	C	SNP	PNISR	ENST00000369239	human	ensembl	74_37	-1	known	missense	c.83	p.D28G	1.000	NULL	NULL	-	no_errors	PNISR	HGNC	ENSG00000132424				89	0	0	49	27	35.5263
USP45	0	genome.wustl.edu	37	6	99891518	99891518	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99891518	99891518	A	C	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	missense	c.1996	p.Y666D	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				54	0	0	34	10	22.7273
USP45	0	genome.wustl.edu	37	6	99956550	99956550	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	99956550	99956550	C	T	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	missense	c.209	p.R70K	0.869	pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				50	0	0	20	12	37.5
PPP1R35	0	genome.wustl.edu	37	7	100032928	100032928	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100032928	100032928	C	A	SNP	PPP1R35	ENST00000476185	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.387	-	-	-	no_errors	PPP1R35	HGNC	ENSG00000160813				30	0	0	10	7	41.1765
PCOLCE	0	genome.wustl.edu	37	7	100201741	100201741	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100201741	100201741	G	A	SNP	PCOLCE	ENST00000223061	human	ensembl	74_37	+1	known	missense	c.364	p.A122T	0.991	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333				154	0	0	65	34	34.3434
PCOLCE	0	genome.wustl.edu	37	7	100203324	100203324	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100203324	100203324	T	C	SNP	PCOLCE	ENST00000223061	human	ensembl	74_37	+1	known	missense	c.614	p.F205S	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE	HGNC	ENSG00000106333				14	0	0	4	3	42.8571
ZAN	0	genome.wustl.edu	37	7	100358106	100358106	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100358106	100358106	C	T	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	silent	c.3789	p.F1263	0.998	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				123	0	0	44	26	37.1429
ZAN	0	genome.wustl.edu	37	7	100385564	100385564	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100385564	100385564	T	G	SNP	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	missense	c.7030	p.F2344V	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				86	0	0	35	20	36.3636
MUC17	0	genome.wustl.edu	37	7	100682994	100682994	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100682994	100682994	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.8297	p.S2766Y	0.035	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				612	0	0	321	124	27.8652
MUC17	0	genome.wustl.edu	37	7	100686614	100686614	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100686614	100686614	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.11917	p.T3973A	0.017	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				213	0	0	147	13	8.125
RABL5	0	genome.wustl.edu	37	7	100958425	100958425	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100958425	100958425	A	C	SNP	RABL5	ENST00000315322	human	ensembl	74_37	-1	known	missense	c.548	p.I183S	1.000	NULL	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RABL5	HGNC	ENSG00000128581				82	0	0	53	22	29.3333
RABL5	0	genome.wustl.edu	37	7	100962276	100962276	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	100962276	100962276	G	T	SNP	RABL5	ENST00000315322	human	ensembl	74_37	-1	known	missense	c.77	p.S26Y	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase	-	no_errors	RABL5	HGNC	ENSG00000128581				96	0	0	61	30	32.967
CUX1	0	genome.wustl.edu	37	7	101925144	101925144	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	101925144	101925144	C	A	SNP	CUX1	ENST00000292538	human	ensembl	74_37	+1	known	missense	c.1834	p.L612I	1.000	pfam_CASP_C	pfam_CASP_C,superfamily_LemA-like_dom	-	no_errors	CUX1	HGNC	ENSG00000257923				105	0	0	33	16	32.6531
FBXL13	0	genome.wustl.edu	37	7	102517974	102517974	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	102517974	102517974	A	G	SNP	FBXL13	ENST00000313221	human	ensembl	74_37	-1	known	silent	c.1575	p.Y525	0.001	smart_Leu-rich_rpt_Cys-con_subtyp	smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL13	HGNC	ENSG00000161040				94	0	0	49	25	33.7838
DPY19L2P2	0	genome.wustl.edu	37	7	102837678	102837678	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	102837678	102837678	T	C	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				42	0	0	29	18	38.2979
DPY19L2P2	0	genome.wustl.edu	37	7	102856922	102856922	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	102856922	102856922	G	A	SNP	DPY19L2P2	ENST00000312132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	DPY19L2P2	HGNC	ENSG00000170629				81	0	0	63	32	33.6842
DNAJC2	0	genome.wustl.edu	37	7	102953458	102953458	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	102953458	102953458	C	A	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.1727	p.R576I	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				209	0	0	119	50	29.5858
DNAJC2	0	genome.wustl.edu	37	7	102967059	102967059	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	102967059	102967059	A	G	SNP	DNAJC2	ENST00000379263	human	ensembl	74_37	-1	known	missense	c.503	p.V168A	1.000	NULL	pfam_SANT/Myb,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain	-	no_errors	DNAJC2	HGNC	ENSG00000105821				55	0	0	38	23	37.7049
SLC26A5	0	genome.wustl.edu	37	7	103061263	103061263	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	103061263	103061263	G	T	SNP	SLC26A5	ENST00000306312	human	ensembl	74_37	-1	known	missense	c.214	p.P72T	1.000	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A5	HGNC	ENSG00000170615				119	0	0	70	36	33.9623
RELN	0	genome.wustl.edu	37	7	103155842	103155842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	103155842	103155842	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.7909	p.R2637C	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				54	0	0	38	20	34.4828
RELN	0	genome.wustl.edu	37	7	103179740	103179740	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	103179740	103179740	A	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.6965	p.V2322G	1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				56	0	0	38	28	42.4242
RELN	0	genome.wustl.edu	37	7	103205762	103205762	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	103205762	103205762	A	C	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.5173	p.W1725G	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				127	0	0	64	27	29.6703
RELN	0	genome.wustl.edu	37	7	103276722	103276722	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	103276722	103276722	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.2263	p.R755C	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				49	0	0	46	7	13.2075
KMT2E	0	genome.wustl.edu	37	7	104731694	104731694	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	104731694	104731694	A	C	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.1655	p.K552T	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				48	0	0	33	13	28.2609
KMT2E	0	genome.wustl.edu	37	7	104746336	104746336	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	104746336	104746336	A	C	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.2482	p.N828H	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				75	0	0	48	21	30.4348
SRPK2	0	genome.wustl.edu	37	7	104751369	104751369	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	104751369	104751369	A	C	SNP	SRPK2	ENST00000493638	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SRPK2	HGNC	ENSG00000135250				31	0	0	24	14	36.8421
PUS7	0	genome.wustl.edu	37	7	105111185	105111185	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	105111185	105111185	G	A	SNP	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	nonsense	c.1348	p.R450*	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				188	0	0	101	44	30.3448
RINT1	0	genome.wustl.edu	37	7	105187508	105187508	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	105187508	105187508	A	C	SNP	RINT1	ENST00000257700	human	ensembl	74_37	+1	known	missense	c.667	p.I223L	1.000	NULL	pfam_RINT1_TIP1	-	no_errors	RINT1	HGNC	ENSG00000135249				120	0	0	72	37	33.945
CDHR3	0	genome.wustl.edu	37	7	105662793	105662793	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	105662793	105662793	T	G	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	missense	c.1975	p.S659A	0.914	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				248	1	0.401606	105	66	38.5965
NAMPT	0	genome.wustl.edu	37	7	105902057	105902057	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	105902057	105902057	C	T	SNP	NAMPT	ENST00000222553	human	ensembl	74_37	-1	known	missense	c.1066	p.V356I	1.000	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	pfam_Nic_PRibTrfase-Fam,superfamily_Quinolinate_PRibosylTrfase_C,pirsf_Nicotinamide_PRibTrfase	-	no_errors	NAMPT	HGNC	ENSG00000105835				107	0	0	90	49	35.2518
NAMPT	0	genome.wustl.edu	37	7	105908906	105908906	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	105908906	105908906	T	G	SNP	NAMPT	ENST00000467730	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.971	-	-	-	no_errors	NAMPT	HGNC	ENSG00000105835				77	0	0	71	38	34.8624
PIK3CG	0	genome.wustl.edu	37	7	106520000	106520000	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	106520000	106520000	C	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.2428	p.P810T	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				82	0	0	57	29	33.7209
COG5	0	genome.wustl.edu	37	7	106938717	106938717	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	106938717	106938717	G	A	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.1276	p.R426C	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				81	0	0	60	33	35.4839
COG5	0	genome.wustl.edu	37	7	107002853	107002853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	107002853	107002853	C	T	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.941	p.R314Q	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597				55	0	0	20	19	48.7179
SLC26A4	0	genome.wustl.edu	37	7	107314667	107314667	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	107314667	107314667	C	T	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	silent	c.474	p.D158	0.975	tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137				137	0	0	92	43	31.8519
SLC26A3	0	genome.wustl.edu	37	7	107408302	107408302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	107408302	107408302	T	G	SNP	SLC26A3	ENST00000340010	human	ensembl	74_37	-1	known	missense	c.2114	p.K705T	0.148	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138				36	0	0	43	16	27.1186
NRCAM	0	genome.wustl.edu	37	7	107790351	107790351	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	107790351	107790351	A	C	SNP	NRCAM	ENST00000522550	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NRCAM	HGNC	ENSG00000091129				159	0	0	104	47	31.1258
PHF14	0	genome.wustl.edu	37	7	11076293	11076293	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	11076293	11076293	A	C	SNP	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	silent	c.1851	p.A617	0.998	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				37	0	0	29	12	29.2683
PHF14	0	genome.wustl.edu	37	7	11091326	11091326	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	11091326	11091326	A	G	SNP	PHF14	ENST00000403050	human	ensembl	74_37	+1	known	silent	c.2400	p.S800	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF14	HGNC	ENSG00000106443				51	0	0	34	13	27.6596
DOCK4	0	genome.wustl.edu	37	7	111503386	111503386	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	111503386	111503386	G	A	SNP	DOCK4	ENST00000476846	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	DOCK4	HGNC	ENSG00000128512				35	0	0	22	10	31.25
ZNF277	0	genome.wustl.edu	37	7	111958290	111958290	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	111958290	111958290	C	T	SNP	ZNF277	ENST00000361822	human	ensembl	74_37	+1	known	silent	c.519	p.G173	0.010	smart_Znf_C2H2-like	pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF277	HGNC	ENSG00000198839				60	0	0	38	22	36.6667
PPP1R3A	0	genome.wustl.edu	37	7	113518902	113518902	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	113518902	113518902	T	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	nonsense	c.2245	p.K749*	1.000	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				163	0	0	91	54	37.2414
FOXP2	0	genome.wustl.edu	37	7	114271749	114271749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	114271749	114271749	C	T	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.839	p.S280L	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				57	0	0	28	22	44
FOXP2	0	genome.wustl.edu	37	7	114298150	114298150	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	114298150	114298150	G	A	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	silent	c.1371	p.S457	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				149	0	0	69	45	39.4737
THSD7A	0	genome.wustl.edu	37	7	11446969	11446969	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	11446969	11446969	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.3880	p.P1294S	0.602	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				36	0	0	14	12	46.1538
THSD7A	0	genome.wustl.edu	37	7	11450874	11450874	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	11450874	11450874	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.3758	p.R1253Q	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				46	0	0	41	19	31.6667
THSD7A	0	genome.wustl.edu	37	7	11514155	11514155	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	11514155	11514155	T	C	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	silent	c.2058	p.V686	0.015	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				93	0	0	32	15	31.9149
TFEC	0	genome.wustl.edu	37	7	115590937	115590937	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	115590937	115590937	G	A	SNP	TFEC	ENST00000265440	human	ensembl	74_37	-1	known	missense	c.506	p.S169F	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEC	HGNC	ENSG00000105967				43	0	0	45	17	27.4194
TFEC	0	genome.wustl.edu	37	7	115590981	115590981	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	115590981	115590981	A	G	SNP	TFEC	ENST00000265440	human	ensembl	74_37	-1	known	silent	c.462	p.N154	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEC	HGNC	ENSG00000105967				43	0	0	38	20	34.4828
ST7	0	genome.wustl.edu	37	7	116769862	116769862	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	116769862	116769862	G	A	SNP	ST7	ENST00000265437	human	ensembl	74_37	+1	known	missense	c.410	p.R137Q	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866				99	0	0	63	26	29.2135
ST7	0	genome.wustl.edu	37	7	116770546	116770546	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	116770546	116770546	T	C	SNP	ST7	ENST00000265437	human	ensembl	74_37	+1	known	missense	c.451	p.Y151H	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866				132	0	0	65	42	39.2523
ST7-AS2	0	genome.wustl.edu	37	7	116770717	116770717	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	116770717	116770717	G	T	SNP	ST7-AS2	ENST00000434993	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ST7-AS2	HGNC	ENSG00000226367				43	0	0	25	18	41.8605
ST7	0	genome.wustl.edu	37	7	116849924	116849924	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	116849924	116849924	C	A	SNP	ST7	ENST00000265437	human	ensembl	74_37	+1	known	missense	c.1338	p.F446L	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7	HGNC	ENSG00000004866				51	0	0	46	21	31.3433
WNT2	0	genome.wustl.edu	37	7	116960623	116960623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	116960623	116960623	C	T	SNP	WNT2	ENST00000265441	human	ensembl	74_37	-1	known	missense	c.308	p.R103Q	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989				27	0	0	23	11	32.3529
ASZ1	0	genome.wustl.edu	37	7	117066950	117066950	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	117066950	117066950	T	G	SNP	ASZ1	ENST00000284629	human	ensembl	74_37	-1	known	missense	c.145	p.K49Q	0.676	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ASZ1	HGNC	ENSG00000154438				161	0	0	121	47	27.9762
CFTR	0	genome.wustl.edu	37	7	117246794	117246794	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	117246794	117246794	T	C	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.2975	p.F992S	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				146	0	0	110	76	40.8602
CTTNBP2	0	genome.wustl.edu	37	7	117431919	117431919	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	117431919	117431919	C	T	SNP	CTTNBP2	ENST00000160373	human	ensembl	74_37	-1	known	missense	c.1331	p.R444Q	1.000	NULL	pfam_Cortactin-binding_p2_N,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CTTNBP2	HGNC	ENSG00000077063				345	1	0.289017	186	91	32.852
KCND2	0	genome.wustl.edu	37	7	119915724	119915724	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	119915724	119915724	G	T	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.1038	p.E346D	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				147	0	0	71	45	38.7931
ING3	0	genome.wustl.edu	37	7	120593395	120593395	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	120593395	120593395	C	A	SNP	ING3	ENST00000315870	human	ensembl	74_37	+1	known	missense	c.138	p.F46L	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	ING3	HGNC	ENSG00000071243				106	0	0	69	45	39.4737
CPED1	0	genome.wustl.edu	37	7	120704358	120704358	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	120704358	120704358	A	C	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.607	p.R203	1.000	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				49	0	0	37	18	32.7273
CPED1	0	genome.wustl.edu	37	7	120739989	120739989	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	120739989	120739989	G	A	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	silent	c.759	p.T253	0.791	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				64	0	0	46	18	28.125
CPED1	0	genome.wustl.edu	37	7	120935617	120935617	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	120935617	120935617	C	T	SNP	CPED1	ENST00000310396	human	ensembl	74_37	+1	known	nonsense	c.2992	p.R998*	0.003	NULL	NULL	-	no_errors	CPED1	HGNC	ENSG00000106034				125	0	0	77	41	34.7458
WNT16	0	genome.wustl.edu	37	7	120978940	120978940	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	120978940	120978940	C	T	SNP	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	silent	c.639	p.V213	0.421	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				57	0	0	24	17	41.4634
PTPRZ1	0	genome.wustl.edu	37	7	121608065	121608065	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	121608065	121608065	C	A	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.185	p.S62Y	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				85	0	0	72	22	23.4043
PTPRZ1	0	genome.wustl.edu	37	7	121651597	121651597	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	121651597	121651597	C	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.2497	p.R833C	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				242	0	0	126	55	30.3867
PTPRZ1	0	genome.wustl.edu	37	7	121653537	121653537	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	121653537	121653537	G	T	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.4437	p.E1479D	0.009	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				88	0	0	60	26	30.2326
TAS2R16	0	genome.wustl.edu	37	7	122635462	122635462	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	122635462	122635462	T	C	SNP	TAS2R16	ENST00000249284	human	ensembl	74_37	-1	known	missense	c.227	p.Y76C	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R16	HGNC	ENSG00000128519				90	0	0	54	32	37.2093
IQUB	0	genome.wustl.edu	37	7	123109296	123109296	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	123109296	123109296	A	G	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	missense	c.1553	p.V518A	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				126	0	0	77	25	24.5098
IQUB	0	genome.wustl.edu	37	7	123109360	123109360	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	123109360	123109360	C	A	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	nonsense	c.1489	p.E497*	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				111	0	0	66	39	37.1429
ASB15	0	genome.wustl.edu	37	7	123276892	123276892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	123276892	123276892	C	T	SNP	ASB15	ENST00000275699	human	ensembl	74_37	+1	known	missense	c.1624	p.R542W	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB15	HGNC	ENSG00000146809				106	0	0	63	37	37
HYAL4	0	genome.wustl.edu	37	7	123509153	123509153	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	123509153	123509153	C	T	SNP	HYAL4	ENST00000223026	human	ensembl	74_37	+1	known	missense	c.826	p.R276C	0.096	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	HYAL4	HGNC	ENSG00000106302				99	0	0	61	24	28.2353
SPAM1	0	genome.wustl.edu	37	7	123599570	123599570	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	123599570	123599570	G	T	SNP	SPAM1	ENST00000340011	human	ensembl	74_37	+1	known	missense	c.1077	p.E359D	0.000	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	pfam_Hyaluronidase,superfamily_Glycoside_hydrolase_SF,pirsf_Hyaluronidase,prints_Hyaluronidase	-	no_errors	SPAM1	HGNC	ENSG00000106304				70	0	0	39	19	32.7586
POT1	0	genome.wustl.edu	37	7	124503537	124503537	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	124503537	124503537	A	G	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.413	p.V138A	0.998	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				140	0	0	88	45	33.8346
POT1	0	genome.wustl.edu	37	7	124537223	124537223	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	124537223	124537223	G	T	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.5	p.S2Y	1.000	NULL	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513				54	0	0	44	15	25.4237
SCIN	0	genome.wustl.edu	37	7	12680065	12680065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	12680065	12680065	G	A	SNP	SCIN	ENST00000297029	human	ensembl	74_37	+1	known	missense	c.1504	p.G502R	1.000	NULL	pfam_Gelsolin_dom,smart_Villin/Gelsolin,prints_Villin/Gelsolin	-	no_errors	SCIN	HGNC	ENSG00000006747				43	0	0	26	10	27.7778
GCC1	0	genome.wustl.edu	37	7	127222278	127222278	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	127222278	127222278	G	A	SNP	GCC1	ENST00000321407	human	ensembl	74_37	-1	known	silent	c.2118	p.I706	0.217	superfamily_ARM-type_fold	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562				177	0	0	84	53	38.6861
GCC1	0	genome.wustl.edu	37	7	127222711	127222711	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	127222711	127222711	A	C	SNP	GCC1	ENST00000321407	human	ensembl	74_37	-1	known	missense	c.1685	p.L562R	0.287	NULL	pfam_GRIP,superfamily_ARM-type_fold,smart_GRIP,pfscan_GRIP	-	no_errors	GCC1	HGNC	ENSG00000179562				102	0	0	62	4	6.06061
FSCN3	0	genome.wustl.edu	37	7	127235919	127235919	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	127235919	127235919	T	C	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	silent	c.703	p.L235	0.217	superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328				137	0	0	58	33	36.2637
SND1	0	genome.wustl.edu	37	7	127725811	127725811	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	127725811	127725811	C	A	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.2283	p.V761	1.000	pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				157	0	0	81	37	31.3559
LOC101930494	0	genome.wustl.edu	37	7	128173704	128173704	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	128173704	128173704	A	C	SNP	LOC101930494	ENST00000605862	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-274B21.1	Clone_based_vega_gene	ENSG00000242588				25	0	0	20	8	28.5714
FAM71F1	0	genome.wustl.edu	37	7	128366916	128366916	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	128366916	128366916	A	C	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.844	p.N282H	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				81	0	0	55	20	26.6667
FLNC	0	genome.wustl.edu	37	7	128497188	128497188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	128497188	128497188	C	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.7578	p.F2526L	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				368	0	0	153	72	32
SMO	0	genome.wustl.edu	37	7	128845085	128845085	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	128845085	128845085	C	T	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	silent	c.579	p.C193	0.139	NULL	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				63	0	0	23	19	45.2381
SMO	0	genome.wustl.edu	37	7	128849216	128849216	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	128849216	128849216	C	T	SNP	SMO	ENST00000249373	human	ensembl	74_37	+1	known	missense	c.1444	p.R482C	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,pfam_GPCR_2_secretin-like,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	SMO	HGNC	ENSG00000128602				59	0	0	29	13	30.9524
NRF1	0	genome.wustl.edu	37	7	129297378	129297378	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	129297378	129297378	G	A	SNP	NRF1	ENST00000393231	human	ensembl	74_37	+1	known	missense	c.187	p.A63T	1.000	NULL	pfam_Nrf1_NLS/DNA-bd_dimer,pfam_Nrf1_activation-bd	-	no_errors	NRF1	HGNC	ENSG00000106459				106	0	0	65	34	34.3434
KLHDC10	0	genome.wustl.edu	37	7	129770576	129770576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	129770576	129770576	G	A	SNP	KLHDC10	ENST00000335420	human	ensembl	74_37	+1	known	missense	c.1319	p.R440H	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	-	no_errors	KLHDC10	HGNC	ENSG00000128607				151	0	0	77	33	30
CPA2	0	genome.wustl.edu	37	7	129910557	129910557	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	129910557	129910557	G	T	SNP	CPA2	ENST00000222481	human	ensembl	74_37	+1	known	nonsense	c.313	p.E105*	1.000	superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA2	HGNC	ENSG00000158516				99	0	0	58	20	25.641
MIR335	0	genome.wustl.edu	37	7	130137604	130137604	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	130137604	130137604	G	A	SNP	MIR335	ENST00000604666	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	hsa-mir-335	miRBase	ENSG00000270823				14	0	0	6	5	45.4545
TSGA13	0	genome.wustl.edu	37	7	130356562	130356562	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	130356562	130356562	C	T	SNP	TSGA13	ENST00000356588	human	ensembl	74_37	-1	known	silent	c.597	p.Q199	0.999	NULL	NULL	-	no_errors	TSGA13	HGNC	ENSG00000213265				158	0	0	99	53	34.8684
MKLN1	0	genome.wustl.edu	37	7	131084189	131084189	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	131084189	131084189	A	C	SNP	MKLN1	ENST00000352689	human	ensembl	74_37	+1	known	missense	c.700	p.N234H	1.000	pfscan_CTLH_C	pfam_Muskelin_N,pfam_Kelch_1,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_LisH_dimerisation,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	MKLN1	HGNC	ENSG00000128585				123	0	0	93	55	37.1622
EXOC4	0	genome.wustl.edu	37	7	133502136	133502136	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133502136	133502136	C	T	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	nonsense	c.1573	p.R525*	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				49	0	0	29	11	27.5
EXOC4	0	genome.wustl.edu	37	7	133749115	133749115	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133749115	133749115	A	G	SNP	EXOC4	ENST00000253861	human	ensembl	74_37	+1	known	missense	c.2759	p.Y920C	1.000	NULL	pfam_Sec8_exocyst	-	no_errors	EXOC4	HGNC	ENSG00000131558				76	0	0	42	26	38.2353
LRGUK	0	genome.wustl.edu	37	7	133812199	133812199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133812199	133812199	G	A	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.79	p.A27T	0.000	NULL	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				183	0	0	110	41	27.1523
LRGUK	0	genome.wustl.edu	37	7	133859329	133859329	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133859329	133859329	G	T	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	nonsense	c.961	p.E321*	0.972	NULL	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				80	0	0	62	39	38.6139
LRGUK	0	genome.wustl.edu	37	7	133884125	133884125	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133884125	133884125	A	C	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.1699	p.K567Q	0.096	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				154	0	0	101	57	36.0759
SLC35B4	0	genome.wustl.edu	37	7	133979591	133979591	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	133979591	133979591	C	A	SNP	SLC35B4	ENST00000378509	human	ensembl	74_37	-1	known	missense	c.990	p.K330N	1.000	NULL	pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35B4	HGNC	ENSG00000205060				87	0	0	52	18	25.7143
BPGM	0	genome.wustl.edu	37	7	134346766	134346766	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	134346766	134346766	G	T	SNP	BPGM	ENST00000344924	human	ensembl	74_37	+1	known	missense	c.507	p.W169C	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	BPGM	HGNC	ENSG00000172331				89	0	0	55	31	36.0465
CALD1	0	genome.wustl.edu	37	7	134552495	134552495	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	134552495	134552495	T	G	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.11	p.F4C	1.000	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				27	0	0	11	9	45
CALD1	0	genome.wustl.edu	37	7	134613557	134613557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	134613557	134613557	C	T	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.124	p.R42C	1.000	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				62	0	0	29	26	47.2727
CALD1	0	genome.wustl.edu	37	7	134618087	134618087	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	134618087	134618087	A	C	SNP	CALD1	ENST00000361388	human	ensembl	74_37	+1	known	missense	c.567	p.E189D	0.654	pfam_Caldesmon_LSP	pfam_Caldesmon_LSP,prints_Caldesmon	-	no_errors	CALD1	HGNC	ENSG00000122786				30	0	0	13	6	31.5789
C7orf49	0	genome.wustl.edu	37	7	134852550	134852550	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	134852550	134852550	C	T	SNP	C7orf49	ENST00000393114	human	ensembl	74_37	-1	known	silent	c.147	p.A49	0.000	NULL	NULL	-	no_errors	C7orf49	HGNC	ENSG00000122783				72	0	0	39	13	25
FAM180A	0	genome.wustl.edu	37	7	135418926	135418926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	135418926	135418926	G	A	SNP	FAM180A	ENST00000338588	human	ensembl	74_37	-1	known	missense	c.319	p.L107F	1.000	NULL	NULL	-	no_errors	FAM180A	HGNC	ENSG00000189320				175	0	0	84	54	39.1304
CHRM2	0	genome.wustl.edu	37	7	136700761	136700761	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	136700761	136700761	G	T	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.1149	p.K383N	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072				127	0	0	98	37	27.4074
DGKI	0	genome.wustl.edu	37	7	137151664	137151664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	137151664	137151664	C	T	SNP	DGKI	ENST00000424189	human	ensembl	74_37	-1	novel	missense	c.2531	p.R844Q	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				62	0	0	44	24	35.2941
AKR1D1	0	genome.wustl.edu	37	7	137776597	137776597	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	137776597	137776597	T	G	SNP	AKR1D1	ENST00000242375	human	ensembl	74_37	+1	known	missense	c.345	p.D115E	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1D1	HGNC	ENSG00000122787				133	0	0	68	37	35.2381
TRIM24	0	genome.wustl.edu	37	7	138223421	138223421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138223421	138223421	G	A	SNP	TRIM24	ENST00000343526	human	ensembl	74_37	+1	known	missense	c.1016	p.R339H	1.000	smart_Bbox_C	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM24	HGNC	ENSG00000122779				140	0	0	84	43	33.8583
ATP6V0A4	0	genome.wustl.edu	37	7	138413516	138413516	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138413516	138413516	C	T	SNP	ATP6V0A4	ENST00000310018	human	ensembl	74_37	-1	known	missense	c.2000	p.R667Q	0.715	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	ATP6V0A4	HGNC	ENSG00000105929				273	0	0	148	86	36.7521
KIAA1549	0	genome.wustl.edu	37	7	138602923	138602923	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138602923	138602923	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.1449	p.T483	0.010	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				47	0	0	22	18	45
KIAA1549	0	genome.wustl.edu	37	7	138603839	138603839	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138603839	138603839	A	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.533	p.I178T	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				214	0	0	94	52	35.6164
TTC26	0	genome.wustl.edu	37	7	138824735	138824735	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138824735	138824735	G	T	SNP	TTC26	ENST00000464848	human	ensembl	74_37	+1	known	missense	c.334	p.A112S	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC26	HGNC	ENSG00000105948				91	0	0	64	30	31.9149
UBN2	0	genome.wustl.edu	37	7	138954246	138954246	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	138954246	138954246	A	C	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.1573	p.K525Q	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				65	0	0	63	12	16
ETV1	0	genome.wustl.edu	37	7	13946202	13946202	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	13946202	13946202	T	G	SNP	ETV1	ENST00000443137	human	ensembl	74_37	-1	known	missense	c.1027	p.N343H	0.829	NULL	pfam_ETS_PEA3_N	-	no_errors	ETV1	HGNC	ENSG00000006468				33	0	0	19	7	26.9231
ETV1	0	genome.wustl.edu	37	7	13971292	13971292	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	13971292	13971292	G	A	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	missense	c.637	p.R213C	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				80	0	0	31	21	40.3846
ETV1	0	genome.wustl.edu	37	7	13971370	13971370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	13971370	13971370	G	A	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	missense	c.559	p.R187C	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				55	0	0	33	15	31.25
SLC37A3	0	genome.wustl.edu	37	7	140045060	140045060	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	140045060	140045060	G	T	SNP	SLC37A3	ENST00000326232	human	ensembl	74_37	-1	known	missense	c.1130	p.S377Y	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC37A3	HGNC	ENSG00000157800				48	0	0	33	11	25
ETV1	0	genome.wustl.edu	37	7	14027729	14027729	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	14027729	14027729	G	T	SNP	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	missense	c.115	p.L39M	1.000	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				50	0	0	35	8	18.6047
BRAF	0	genome.wustl.edu	37	7	140501256	140501256	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	140501256	140501256	A	G	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	silent	c.816	p.C272	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				48	0	0	34	22	39.2857
MRPS33	0	genome.wustl.edu	37	7	140706259	140706259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	140706259	140706259	C	T	SNP	MRPS33	ENST00000324787	human	ensembl	74_37	-1	known	missense	c.292	p.E98K	1.000	NULL	pfam_Ribosomal_S27/S33_mit	-	no_errors	MRPS33	HGNC	ENSG00000090263				137	0	0	88	34	27.8689
WEE2-AS1	0	genome.wustl.edu	37	7	141420654	141420654	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	141420654	141420654	A	C	SNP	WEE2-AS1	ENST00000484172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	WEE2-AS1	HGNC	ENSG00000228775				54	0	0	47	18	27.6923
OR9A4	0	genome.wustl.edu	37	7	141618771	141618771	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	141618771	141618771	T	G	SNP	OR9A4	ENST00000548136	human	ensembl	74_37	+1	known	missense	c.96	p.F32L	0.004	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083				241	0	0	180	72	28.5714
MGAM	0	genome.wustl.edu	37	7	141705352	141705352	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	141705352	141705352	A	C	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	missense	c.22	p.K8Q	0.000	NULL	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				13	0	0	8	4	33.3333
MGAM	0	genome.wustl.edu	37	7	141752213	141752213	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	141752213	141752213	C	A	SNP	MGAM	ENST00000549489	human	ensembl	74_37	+1	known	silent	c.2925	p.A975	0.094	pfam_P_trefoil,smart_P_trefoil	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335				31	0	0	30	3	9.09091
EPHB6	0	genome.wustl.edu	37	7	142568100	142568100	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142568100	142568100	C	A	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	missense	c.2741	p.A914E	0.982	pirsf_Tyr_kinase_ephrin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123				244	0	0	117	49	29.5181
TRPV6	0	genome.wustl.edu	37	7	142583225	142583225	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142583225	142583225	G	T	SNP	TRPV6	ENST00000359396	human	ensembl	74_37	-1	known	missense	c.37	p.L13I	0.997	prints_TRPV6_channel,tigrfam_TRP_channel	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV6_channel,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV6	HGNC	ENSG00000165125				163	0	0	77	31	28.7037
TRPV5	0	genome.wustl.edu	37	7	142611833	142611833	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142611833	142611833	A	G	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.1496	p.V499A	1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				28	0	0	29	5	14.7059
TRPV5	0	genome.wustl.edu	37	7	142622683	142622683	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142622683	142622683	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	0.039	prints_TRPV5/TRPV6,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				90	0	0	47	32	40.5063
TRPV5	0	genome.wustl.edu	37	7	142625919	142625919	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142625919	142625919	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.629	p.T210I	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				136	0	0	64	34	34.6939
TRPV5	0	genome.wustl.edu	37	7	142626165	142626165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142626165	142626165	G	A	SNP	TRPV5	ENST00000265310	human	ensembl	74_37	-1	known	missense	c.538	p.R180W	0.013	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV5/TRPV6,prints_TRPV5,prints_Ankyrin_rpt,tigrfam_TRP_channel	-	no_errors	TRPV5	HGNC	ENSG00000127412				71	0	0	24	16	40
TMEM139	0	genome.wustl.edu	37	7	142983941	142983941	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	142983941	142983941	C	A	SNP	TMEM139	ENST00000471161	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMEM139	HGNC	ENSG00000178826				174	0	0	99	35	26.1194
CLCN1	0	genome.wustl.edu	37	7	143047729	143047729	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143047729	143047729	C	T	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	silent	c.2577	p.G859	0.280	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037				260	1	0.383142	129	48	27.1186
ZYX	0	genome.wustl.edu	37	7	143087027	143087027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143087027	143087027	T	C	SNP	ZYX	ENST00000322764	human	ensembl	74_37	+1	known	missense	c.1571	p.V524A	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	ZYX	HGNC	ENSG00000159840				136	0	0	85	20	19.0476
FAM115A	0	genome.wustl.edu	37	7	143573678	143573678	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143573678	143573678	G	A	SNP	FAM115A	ENST00000479870	human	ensembl	74_37	-1	known	silent	c.24	p.F8	0.940	NULL	NULL	-	no_errors	FAM115A	HGNC	ENSG00000198420				101	0	0	37	37	50
OR2A2	0	genome.wustl.edu	37	7	143806743	143806743	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143806743	143806743	C	T	SNP	OR2A2	ENST00000408979	human	ensembl	74_37	+1	known	missense	c.68	p.A23V	0.287	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989				149	0	0	70	50	41.6667
OR2A14	0	genome.wustl.edu	37	7	143826380	143826380	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143826380	143826380	T	C	SNP	OR2A14	ENST00000408899	human	ensembl	74_37	+1	known	missense	c.175	p.Y59H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938				264	0	0	143	76	34.7032
OR2A14	0	genome.wustl.edu	37	7	143826408	143826408	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143826408	143826408	T	C	SNP	OR2A14	ENST00000408899	human	ensembl	74_37	+1	known	missense	c.203	p.V68A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938				292	0	0	189	78	29.2135
CTAGE4	0	genome.wustl.edu	37	7	143881324	143881324	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143881324	143881324	A	C	SNP	CTAGE4	ENST00000486333	human	ensembl	74_37	+1	known	missense	c.728	p.K243T	0.008	superfamily_tRNA-bd_arm	superfamily_tRNA-bd_arm	-	no_errors	CTAGE4	HGNC	ENSG00000225932				53	0	0	48	18	27.2727
ARHGEF35	0	genome.wustl.edu	37	7	143885366	143885366	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143885366	143885366	C	T	SNP	ARHGEF35	ENST00000378115	human	ensembl	74_37	-1	known	silent	c.111	p.G37	0.009	NULL	NULL	-	no_errors	ARHGEF35	HGNC	ENSG00000213214				33	0	0	35	15	30
OR2A7	0	genome.wustl.edu	37	7	143956182	143956182	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	143956182	143956182	G	T	SNP	OR2A7	ENST00000493325	human	ensembl	74_37	-1	known	silent	c.540	p.I180	0.043	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	OR2A7	HGNC	ENSG00000243896				66	0	0	41	18	30.5085
OR2A1	0	genome.wustl.edu	37	7	144015689	144015689	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	144015689	144015689	C	A	SNP	OR2A1	ENST00000408951	human	ensembl	74_37	+1	known	missense	c.472	p.H158N	0.579	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A1	HGNC	ENSG00000221970				70	0	0	46	10	17.8571
NOBOX	0	genome.wustl.edu	37	7	144098471	144098471	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	144098471	144098471	C	A	SNP	NOBOX	ENST00000467773	human	ensembl	74_37	-1	known	missense	c.512	p.R171I	0.028	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NOBOX	HGNC	ENSG00000106410				59	0	0	19	16	45.7143
DGKB	0	genome.wustl.edu	37	7	14613896	14613896	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	14613896	14613896	C	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.1714	p.D572Y	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				229	0	0	138	80	36.6972
CNTNAP2	0	genome.wustl.edu	37	7	146997332	146997332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	146997332	146997332	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1448	p.R483Q	0.998	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				104	0	0	60	35	36.8421
CNTNAP2	0	genome.wustl.edu	37	7	147092811	147092811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	147092811	147092811	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1609	p.A537T	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				243	0	0	138	62	31
DGKB	0	genome.wustl.edu	37	7	14741347	14741347	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	14741347	14741347	G	A	SNP	DGKB	ENST00000258767	human	ensembl	74_37	-1	known	missense	c.475	p.R159C	1.000	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKB	HGNC	ENSG00000136267				60	0	0	48	12	20
CNTNAP2	0	genome.wustl.edu	37	7	147600755	147600755	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	147600755	147600755	G	A	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2197	p.E733K	0.914	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				44	0	0	29	8	21.6216
CNTNAP2	0	genome.wustl.edu	37	7	147844725	147844725	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	147844725	147844725	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.2697	p.D899	0.997	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				122	0	0	65	42	39.2523
EZH2	0	genome.wustl.edu	37	7	148504761	148504761	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148504761	148504761	C	T	SNP	EZH2	ENST00000320356	human	ensembl	74_37	-1	known	missense	c.2233	p.E745K	1.000	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH2	HGNC	ENSG00000106462				16	0	0	8	8	50
ZNF786	0	genome.wustl.edu	37	7	148768115	148768115	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148768115	148768115	G	T	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.1749	p.H583Q	0.996	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				57	0	0	35	16	31.3725
ZNF425	0	genome.wustl.edu	37	7	148800887	148800887	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148800887	148800887	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	silent	c.2076	p.R692	0.992	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				186	0	0	72	48	40
ZNF425	0	genome.wustl.edu	37	7	148801117	148801117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148801117	148801117	C	T	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	missense	c.1846	p.E616K	0.005	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				205	0	0	109	57	34.3373
ZNF425	0	genome.wustl.edu	37	7	148815333	148815333	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148815333	148815333	G	A	SNP	ZNF425	ENST00000378061	human	ensembl	74_37	-1	known	silent	c.126	p.Y42	0.946	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947				211	0	0	117	64	35.3591
ZNF212	0	genome.wustl.edu	37	7	148947428	148947428	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148947428	148947428	G	A	SNP	ZNF212	ENST00000335870	human	ensembl	74_37	+1	known	missense	c.203	p.R68H	0.749	pfam_DUF3669_Znf	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260				150	0	0	73	43	37.069
ZNF212	0	genome.wustl.edu	37	7	148950967	148950967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	148950967	148950967	G	A	SNP	ZNF212	ENST00000335870	human	ensembl	74_37	+1	known	missense	c.949	p.E317K	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF212	HGNC	ENSG00000170260				84	0	0	52	27	34.1772
ZNF746	0	genome.wustl.edu	37	7	149172249	149172249	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	149172249	149172249	C	T	SNP	ZNF746	ENST00000458143	human	ensembl	74_37	-1	known	silent	c.1164	p.P388	0.969	NULL	pfam_Znf_C2H2,pfam_DUF3669_Znf,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF746	HGNC	ENSG00000181220				44	0	0	19	8	29.6296
SSPO	0	genome.wustl.edu	37	7	149473162	149473162	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	149473162	149473162	C	T	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				45	0	0	24	3	11.1111
SSPO	0	genome.wustl.edu	37	7	149498835	149498835	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	149498835	149498835	A	G	SNP	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				48	0	0	20	14	41.1765
ZNF862	0	genome.wustl.edu	37	7	149558632	149558632	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	149558632	149558632	C	T	SNP	ZNF862	ENST00000223210	human	ensembl	74_37	+1	known	missense	c.2383	p.R795C	0.981	NULL	pfam_Krueppel-associated_box,pfam_HATC_dom_C,superfamily_Krueppel-associated_box,superfamily_RNaseH-like_dom,smart_Krueppel-associated_box,smart_Znf_TTF,pfscan_Krueppel-associated_box	-	no_errors	ZNF862	HGNC	ENSG00000106479				26	0	0	13	4	23.5294
ZBED6CL	0	genome.wustl.edu	37	7	150028036	150028036	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	150028036	150028036	C	T	SNP	ZBED6CL	ENST00000343855	human	ensembl	74_37	+1	known	silent	c.543	p.S181	0.001	NULL	NULL	-	no_errors	ZBED6CL	HGNC	ENSG00000188707				70	0	0	31	7	18.4211
GIMAP8	0	genome.wustl.edu	37	7	150174636	150174636	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	150174636	150174636	G	A	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	missense	c.1766	p.R589H	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				145	0	0	75	36	32.4324
AGAP3	0	genome.wustl.edu	37	7	150820860	150820860	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	150820860	150820860	G	A	SNP	AGAP3	ENST00000485904	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AGAP3	HGNC	ENSG00000133612				95	0	0	35	21	37.5
AGAP3	0	genome.wustl.edu	37	7	150837140	150837140	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	150837140	150837140	A	C	SNP	AGAP3	ENST00000397238	human	ensembl	74_37	+1	known	missense	c.1741	p.K581Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP3	HGNC	ENSG00000133612				23	0	0	13	3	18.75
NUB1	0	genome.wustl.edu	37	7	151042447	151042447	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	151042447	151042447	G	T	SNP	NUB1	ENST00000568733	human	ensembl	74_37	+1	known	missense	c.84	p.K28N	1.000	NULL	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	NUB1	HGNC	ENSG00000013374				29	0	0	20	11	35.4839
INTS1	0	genome.wustl.edu	37	7	1511249	1511249	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	1511249	1511249	G	A	SNP	INTS1	ENST00000389470	human	ensembl	74_37	-1	known	silent	c.6825	p.D2275	0.896	superfamily_ARM-type_fold	pfam_DUF3677,superfamily_ARM-type_fold	-	no_errors	INTS1	HGNC	ENSG00000164880				106	0	0	59	22	27.1605
PRKAG2	0	genome.wustl.edu	37	7	151265922	151265922	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	151265922	151265922	G	A	SNP	PRKAG2	ENST00000287878	human	ensembl	74_37	-1	known	silent	c.1113	p.F371	1.000	pfam_CBS_dom,smart_CBS_dom	pfam_CBS_dom,smart_CBS_dom	-	no_errors	PRKAG2	HGNC	ENSG00000106617				94	0	0	64	27	29.6703
KMT2C	0	genome.wustl.edu	37	7	151845714	151845714	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	151845714	151845714	G	A	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.13469	p.A4490V	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				157	0	0	87	39	30.9524
KMT2C	0	genome.wustl.edu	37	7	151935840	151935840	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	151935840	151935840	A	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.2604	p.I868M	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				111	0	0	78	32	29.0909
XRCC2	0	genome.wustl.edu	37	7	152345946	152345946	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	152345946	152345946	T	C	SNP	XRCC2	ENST00000359321	human	ensembl	74_37	-1	known	silent	c.624	p.E208	0.014	superfamily_P-loop_NTPase	pfam_DNA_recomb/repair_Rad51_C,superfamily_P-loop_NTPase,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	XRCC2	HGNC	ENSG00000196584				256	0	0	142	75	34.5622
DPP6	0	genome.wustl.edu	37	7	154681193	154681193	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	154681193	154681193	G	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	nonsense	c.2404	p.E802*	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				15	0	0	11	5	31.25
DPP6	0	genome.wustl.edu	37	7	154684055	154684055	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	154684055	154684055	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	silent	c.2463	p.D821	0.990	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				117	0	0	65	22	25.2874
RBM33	0	genome.wustl.edu	37	7	155473530	155473530	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	155473530	155473530	G	A	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	silent	c.495	p.E165	0.593	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				47	0	0	35	17	32.6923
RBM33	0	genome.wustl.edu	37	7	155538228	155538228	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	155538228	155538228	A	G	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2911	p.T971A	0.996	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				38	0	0	13	5	27.7778
SHH	0	genome.wustl.edu	37	7	155599139	155599139	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	155599139	155599139	G	A	SNP	SHH	ENST00000297261	human	ensembl	74_37	-1	known	missense	c.413	p.S138F	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,prints_Hedgehog	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	SHH	HGNC	ENSG00000164690				106	0	0	32	15	31.9149
SHH	0	genome.wustl.edu	37	7	155604547	155604547	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	155604547	155604547	T	G	SNP	SHH	ENST00000297261	human	ensembl	74_37	-1	known	missense	c.270	p.E90D	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	SHH	HGNC	ENSG00000164690				312	0	0	155	89	36.4754
RNF32	0	genome.wustl.edu	37	7	156437272	156437272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	156437272	156437272	G	A	SNP	RNF32	ENST00000317955	human	ensembl	74_37	+1	known	missense	c.95	p.R32Q	0.001	NULL	pfam_Znf_C3HC4_RING-type,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_IQ_motif_EF-hand-BS,pfscan_Znf_RING	-	no_errors	RNF32	HGNC	ENSG00000105982				51	0	0	52	24	31.5789
NOM1	0	genome.wustl.edu	37	7	156752741	156752741	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	156752741	156752741	T	C	SNP	NOM1	ENST00000275820	human	ensembl	74_37	+1	known	missense	c.1505	p.I502T	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_Initiation_fac_eIF4g_MI,pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	NOM1	HGNC	ENSG00000146909				125	0	0	60	39	39.3939
DNAJB6	0	genome.wustl.edu	37	7	157177652	157177652	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	157177652	157177652	G	A	SNP	DNAJB6	ENST00000262177	human	ensembl	74_37	+1	known	silent	c.570	p.S190	0.001	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB6	HGNC	ENSG00000105993				154	0	0	66	41	38.3178
PTPRN2	0	genome.wustl.edu	37	7	157341698	157341698	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	157341698	157341698	T	C	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.2987	p.D996G	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				108	0	0	50	34	40.4762
PTPRN2	0	genome.wustl.edu	37	7	157903532	157903532	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	157903532	157903532	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.1701	p.F567	0.004	pfam_Receptor_IA-2	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				14	0	0	1	6	85.7143
NCAPG2	0	genome.wustl.edu	37	7	158437017	158437017	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	158437017	158437017	A	C	SNP	NCAPG2	ENST00000409339	human	ensembl	74_37	-1	known	missense	c.3344	p.F1115C	0.975	NULL	pfam_Condensin2_G2,superfamily_ARM-type_fold	-	no_errors	NCAPG2	HGNC	ENSG00000146918				135	0	0	107	44	29.1391
WDR60	0	genome.wustl.edu	37	7	158715184	158715184	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	158715184	158715184	G	A	SNP	WDR60	ENST00000407559	human	ensembl	74_37	+1	known	missense	c.2038	p.V680M	0.997	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR60	HGNC	ENSG00000126870				53	0	0	22	15	40.5405
ISPD	0	genome.wustl.edu	37	7	16255710	16255710	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	16255710	16255710	A	C	SNP	ISPD	ENST00000407010	human	ensembl	74_37	-1	known	missense	c.1232	p.L411R	0.855	NULL	pfam_IspD	-	no_errors	ISPD	HGNC	ENSG00000214960				33	0	0	36	13	26.5306
ISPD	0	genome.wustl.edu	37	7	16255773	16255773	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	16255773	16255773	T	C	SNP	ISPD	ENST00000407010	human	ensembl	74_37	-1	known	missense	c.1169	p.N390S	0.109	NULL	pfam_IspD	-	no_errors	ISPD	HGNC	ENSG00000214960				22	0	0	17	12	41.3793
SOSTDC1	0	genome.wustl.edu	37	7	16505131	16505131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	16505131	16505131	T	G	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	missense	c.163	p.N55H	0.928	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				134	0	0	127	13	9.28571
ANKMY2	0	genome.wustl.edu	37	7	16650274	16650274	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	16650274	16650274	C	A	SNP	ANKMY2	ENST00000306999	human	ensembl	74_37	-1	known	nonsense	c.646	p.E216*	1.000	NULL	pfam_Ankyrin_rpt,pfam_Znf_MYND,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_MYND	-	no_errors	ANKMY2	HGNC	ENSG00000106524				92	0	0	70	23	24.7312
BZW2	0	genome.wustl.edu	37	7	16714185	16714185	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	16714185	16714185	C	T	SNP	BZW2	ENST00000258761	human	ensembl	74_37	+1	known	silent	c.207	p.F69	1.000	NULL	pfam_W2_domain,superfamily_ARM-type_fold,smart_W2_domain	-	no_errors	BZW2	HGNC	ENSG00000136261				107	0	0	55	38	40.8602
AHR	0	genome.wustl.edu	37	7	17378642	17378642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	17378642	17378642	G	A	SNP	AHR	ENST00000242057	human	ensembl	74_37	+1	known	missense	c.1193	p.R398Q	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				130	0	0	88	42	32.3077
AHR	0	genome.wustl.edu	37	7	17379187	17379187	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	17379187	17379187	G	T	SNP	AHR	ENST00000242057	human	ensembl	74_37	+1	known	nonsense	c.1738	p.E580*	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	AHR	HGNC	ENSG00000106546				186	0	0	103	60	36.8098
SNX13	0	genome.wustl.edu	37	7	17836501	17836501	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	17836501	17836501	G	A	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	nonsense	c.2575	p.R859*	0.993	pfam_Sorting_nexin_C	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				115	0	0	92	40	30.303
SNX13	0	genome.wustl.edu	37	7	17854462	17854462	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	17854462	17854462	G	A	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	missense	c.2059	p.R687C	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				9	0	0	7	5	41.6667
SNX13	0	genome.wustl.edu	37	7	17890483	17890483	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	17890483	17890483	T	C	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	silent	c.942	p.L314	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189				47	0	0	44	19	30.1587
HDAC9	0	genome.wustl.edu	37	7	18687588	18687588	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	18687588	18687588	G	T	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	nonsense	c.1216	p.E406*	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				30	0	0	19	3	13.6364
HDAC9	0	genome.wustl.edu	37	7	18688191	18688191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	18688191	18688191	G	A	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	missense	c.1352	p.R451Q	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				111	0	0	78	36	31.5789
HDAC9	0	genome.wustl.edu	37	7	18975448	18975448	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	18975448	18975448	G	A	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	silent	c.2820	p.T940	1.000	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052				223	0	0	116	67	36.612
FERD3L	0	genome.wustl.edu	37	7	19184613	19184613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	19184613	19184613	G	A	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	missense	c.373	p.R125W	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618				85	0	0	50	24	32.4324
MACC1	0	genome.wustl.edu	37	7	20180649	20180649	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	20180649	20180649	C	A	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	nonsense	c.2479	p.E827*	1.000	NULL	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				121	0	0	88	32	26.6667
ITGB8	0	genome.wustl.edu	37	7	20420296	20420296	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	20420296	20420296	A	C	SNP	ITGB8	ENST00000222573	human	ensembl	74_37	+1	known	missense	c.643	p.N215H	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_EGF_extracell,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB8	HGNC	ENSG00000105855				126	0	0	76	37	32.7434
ABCB5	0	genome.wustl.edu	37	7	20682911	20682911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	20682911	20682911	G	A	SNP	ABCB5	ENST00000404938	human	ensembl	74_37	+1	putative	missense	c.419	p.R140Q	0.993	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846				51	0	0	32	15	31.9149
SP8	0	genome.wustl.edu	37	7	20824181	20824181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	20824181	20824181	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	missense	c.1255	p.D419N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651				21	0	0	12	8	40
DNAH11	0	genome.wustl.edu	37	7	21641066	21641066	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	21641066	21641066	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	nonsense	c.3478	p.E1160*	0.814	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				70	0	0	49	23	31.9444
DNAH11	0	genome.wustl.edu	37	7	21721288	21721288	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	21721288	21721288	C	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.5468	p.S1823Y	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				93	0	0	66	30	31.25
DNAH11	0	genome.wustl.edu	37	7	21857846	21857846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	21857846	21857846	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.10601	p.A3534V	0.998	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				53	0	0	33	17	34
RAPGEF5	0	genome.wustl.edu	37	7	22175722	22175722	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	22175722	22175722	C	T	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	missense	c.1891	p.A631T	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				45	0	0	35	8	18.6047
FAM126A	0	genome.wustl.edu	37	7	22985298	22985298	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	22985298	22985298	A	C	SNP	FAM126A	ENST00000432176	human	ensembl	74_37	-1	known	missense	c.1476	p.I492M	0.740	NULL	pfam_Hyccin	-	no_errors	FAM126A	HGNC	ENSG00000122591				133	0	0	90	43	32.3308
NUPL2	0	genome.wustl.edu	37	7	23239806	23239806	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23239806	23239806	C	T	SNP	NUPL2	ENST00000258742	human	ensembl	74_37	+1	known	silent	c.714	p.S238	0.885	NULL	smart_Znf_CCCH	-	no_errors	NUPL2	HGNC	ENSG00000136243				19	0	0	11	8	42.1053
GPNMB	0	genome.wustl.edu	37	7	23286505	23286505	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23286505	23286505	T	G	SNP	GPNMB	ENST00000381990	human	ensembl	74_37	+1	known	missense	c.29	p.F10C	0.924	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235				110	0	0	89	46	34.0741
GPNMB	0	genome.wustl.edu	37	7	23306137	23306137	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23306137	23306137	A	G	SNP	GPNMB	ENST00000381990	human	ensembl	74_37	+1	known	silent	c.1056	p.G352	0.000	smart_PKD/Chitinase_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235				99	0	0	61	24	28.2353
GPNMB	0	genome.wustl.edu	37	7	23313281	23313281	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23313281	23313281	A	C	SNP	GPNMB	ENST00000470994	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GPNMB	HGNC	ENSG00000136235				79	0	0	38	15	28.3019
IGF2BP3	0	genome.wustl.edu	37	7	23352069	23352069	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23352069	23352069	C	A	SNP	IGF2BP3	ENST00000258729	human	ensembl	74_37	-1	known	missense	c.1652	p.R551I	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP3	HGNC	ENSG00000136231				138	0	0	63	35	35.7143
TRA2A	0	genome.wustl.edu	37	7	23552632	23552632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23552632	23552632	G	A	SNP	TRA2A	ENST00000297071	human	ensembl	74_37	-1	known	missense	c.406	p.R136C	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TRA2A	HGNC	ENSG00000164548				86	0	0	49	25	33.7838
FAM221A	0	genome.wustl.edu	37	7	23724207	23724207	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23724207	23724207	A	C	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.155	p.N52T	1.000	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732				54	0	0	46	22	32.3529
STK31	0	genome.wustl.edu	37	7	23811802	23811802	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	23811802	23811802	C	T	SNP	STK31	ENST00000355870	human	ensembl	74_37	+1	known	missense	c.1870	p.P624S	1.000	NULL	pfam_Tudor,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tudor,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Tudor,pfscan_Prot_kinase_dom	-	no_errors	STK31	HGNC	ENSG00000196335				43	0	0	60	28	31.8182
EIF3B	0	genome.wustl.edu	37	7	2406181	2406181	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	2406181	2406181	C	A	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	missense	c.1311	p.F437L	1.000	pirsf_EIF3B	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				136	0	0	76	41	35.0427
EIF3B	0	genome.wustl.edu	37	7	2414218	2414218	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	2414218	2414218	C	T	SNP	EIF3B	ENST00000360876	human	ensembl	74_37	+1	known	silent	c.1866	p.F622	0.974	pfam_TIF_beta_prop-like,pirsf_EIF3B	pfam_TIF_beta_prop-like,pfam_RRM_dom,smart_RRM_dom,pirsf_EIF3B,pfscan_RRM_dom	-	no_errors	EIF3B	HGNC	ENSG00000106263				168	0	0	90	36	28.5714
MPP6	0	genome.wustl.edu	37	7	24663347	24663347	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	24663347	24663347	G	T	SNP	MPP6	ENST00000222644	human	ensembl	74_37	+1	known	missense	c.61	p.D21Y	1.000	pfam_L27_C,smart_L27,pfscan_L27	pfam_GK/Ca_channel_bsu,pfam_L27_C,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	MPP6	HGNC	ENSG00000105926				51	0	0	47	23	32.8571
NFE2L3	0	genome.wustl.edu	37	7	26225069	26225069	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	26225069	26225069	G	A	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	missense	c.1751	p.R584Q	1.000	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344				79	0	0	47	16	25.3968
HOXA-AS3	0	genome.wustl.edu	37	7	27186817	27186817	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	27186817	27186817	C	T	SNP	HOXA-AS3	ENST00000518947	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.219	-	-	-	no_errors	HOXA-AS3	HGNC	ENSG00000254369				20	0	0	16	6	27.2727
HIBADH	0	genome.wustl.edu	37	7	27669050	27669050	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	27669050	27669050	C	A	SNP	HIBADH	ENST00000265395	human	ensembl	74_37	-1	known	nonsense	c.424	p.E142*	1.000	pfam_6PGDH_NADP-bd,tigrfam_IsoBut3OH_DH	pfam_6PGDH_NADP-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,superfamily_6-PGluconate_DH_C-like,tigrfam_IsoBut3OH_DH	-	no_errors	HIBADH	HGNC	ENSG00000106049				97	0	0	71	49	40.8333
TAX1BP1	0	genome.wustl.edu	37	7	27831686	27831686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	27831686	27831686	G	A	SNP	TAX1BP1	ENST00000396319	human	ensembl	74_37	+1	known	missense	c.1100	p.R367Q	1.000	pfam_CoCoA	pfam_CoCoA	-	no_errors	TAX1BP1	HGNC	ENSG00000106052				103	0	0	53	28	34.5679
CPVL	0	genome.wustl.edu	37	7	29132288	29132288	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	29132288	29132288	T	C	SNP	CPVL	ENST00000265394	human	ensembl	74_37	-1	known	missense	c.493	p.T165A	0.000	pfam_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CPVL	HGNC	ENSG00000106066				52	0	0	31	13	29.5455
CARD11	0	genome.wustl.edu	37	7	2946428	2946428	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	2946428	2946428	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.3309	p.C1103	1.000	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				83	0	0	32	17	34.6939
CARD11	0	genome.wustl.edu	37	7	2951926	2951926	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	2951926	2951926	G	A	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.3024	p.I1008	0.955	superfamily_P-loop_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				92	0	0	31	21	40.3846
CARD11	0	genome.wustl.edu	37	7	2974176	2974176	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	2974176	2974176	A	C	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	missense	c.1429	p.S477A	0.404	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				70	0	0	27	13	32.5
C7orf41	0	genome.wustl.edu	37	7	30185810	30185810	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	30185810	30185810	C	T	SNP	C7orf41	ENST00000324453	human	ensembl	74_37	+1	known	silent	c.180	p.S60	0.999	NULL	NULL	-	no_errors	C7orf41	HGNC	ENSG00000180354				150	0	0	57	31	35.2273
INMT	0	genome.wustl.edu	37	7	30795377	30795377	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	30795377	30795377	G	A	SNP	INMT	ENST00000013222	human	ensembl	74_37	+1	known	silent	c.702	p.Q234	0.000	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	INMT	HGNC	ENSG00000241644				188	0	0	94	42	30.8824
CCDC129	0	genome.wustl.edu	37	7	31611727	31611727	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31611727	31611727	A	C	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.398	p.Q133P	0.796	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				36	0	0	18	10	35.7143
CCDC129	0	genome.wustl.edu	37	7	31682346	31682346	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31682346	31682346	G	A	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	silent	c.1440	p.K480	0.000	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				84	0	0	37	14	27.451
CCDC129	0	genome.wustl.edu	37	7	31691657	31691657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31691657	31691657	T	C	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.2894	p.I965T	0.007	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				19	0	0	12	5	29.4118
PPP1R17	0	genome.wustl.edu	37	7	31735144	31735144	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31735144	31735144	A	C	SNP	PPP1R17	ENST00000342032	human	ensembl	74_37	+1	known	missense	c.144	p.K48N	0.956	NULL	NULL	-	no_errors	PPP1R17	HGNC	ENSG00000106341				132	0	0	96	45	31.9149
PPP1R17	0	genome.wustl.edu	37	7	31746890	31746890	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31746890	31746890	C	T	SNP	PPP1R17	ENST00000342032	human	ensembl	74_37	+1	known	missense	c.461	p.A154V	0.999	NULL	NULL	-	no_errors	PPP1R17	HGNC	ENSG00000106341				65	0	0	36	15	29.4118
PDE1C	0	genome.wustl.edu	37	7	31855674	31855674	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31855674	31855674	G	A	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.1677	p.G559	0.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				243	0	0	120	77	39.0863
PDE1C	0	genome.wustl.edu	37	7	31862790	31862790	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	31862790	31862790	C	T	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	silent	c.1479	p.P493	0.026	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				130	0	0	69	49	41.5254
KBTBD2	0	genome.wustl.edu	37	7	32909220	32909220	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	32909220	32909220	A	G	SNP	KBTBD2	ENST00000304056	human	ensembl	74_37	-1	known	missense	c.1609	p.F537L	1.000	pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852				239	0	0	115	66	36.4641
KBTBD2	0	genome.wustl.edu	37	7	32910050	32910050	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	32910050	32910050	C	A	SNP	KBTBD2	ENST00000304056	human	ensembl	74_37	-1	known	missense	c.779	p.R260I	1.000	pirsf_Kelch-like_gigaxonin	pfam_BTB_POZ,pfam_BACK,pfam_Kelch_1,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD2	HGNC	ENSG00000170852				81	0	0	58	27	31.7647
NT5C3A	0	genome.wustl.edu	37	7	33066500	33066500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	33066500	33066500	G	A	SNP	NT5C3A	ENST00000242210	human	ensembl	74_37	-1	known	nonsense	c.181	p.R61*	1.000	tigrfam_Pyrimidine_nucleotidase_eu	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3A	HGNC	ENSG00000122643				63	0	0	39	22	36.0656
BBS9	0	genome.wustl.edu	37	7	33312691	33312691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	33312691	33312691	C	T	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	0.023	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507				204	0	0	129	62	32.4607
DPY19L2P1	0	genome.wustl.edu	37	7	35129829	35129829	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	35129829	35129829	A	C	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				30	0	0	22	19	46.3415
DPY19L2P1	0	genome.wustl.edu	37	7	35129972	35129972	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	35129972	35129972	A	C	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				142	0	0	122	71	36.7876
KIAA0895	0	genome.wustl.edu	37	7	36366482	36366482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	36366482	36366482	C	T	SNP	KIAA0895	ENST00000297063	human	ensembl	74_37	-1	known	missense	c.1450	p.E484K	0.988	pfam_DUF1704	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542				144	0	0	84	46	35.3846
ANLN	0	genome.wustl.edu	37	7	36435908	36435908	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	36435908	36435908	A	C	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	missense	c.52	p.N18H	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				73	0	0	55	26	32.0988
ANLN	0	genome.wustl.edu	37	7	36438957	36438957	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	36438957	36438957	A	C	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	missense	c.442	p.K148Q	0.961	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				96	0	0	39	22	36.0656
ANLN	0	genome.wustl.edu	37	7	36465637	36465637	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	36465637	36465637	A	C	SNP	ANLN	ENST00000265748	human	ensembl	74_37	+1	known	missense	c.2762	p.H921P	0.993	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	ANLN	HGNC	ENSG00000011426				27	0	0	33	21	38.8889
SDK1	0	genome.wustl.edu	37	7	3678674	3678674	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	3678674	3678674	T	G	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.497	p.F166C	0.992	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				26	0	0	21	10	32.2581
SDK1	0	genome.wustl.edu	37	7	3681706	3681706	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	3681706	3681706	G	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	nonsense	c.682	p.E228*	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				93	0	0	53	21	28.3784
NME8	0	genome.wustl.edu	37	7	37901645	37901645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	37901645	37901645	G	A	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.286	p.E96K	0.111	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				77	0	0	52	27	34.1772
NME8	0	genome.wustl.edu	37	7	37907312	37907312	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	37907312	37907312	C	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	silent	c.630	p.F210	0.998	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				77	0	0	43	24	35.8209
SFRP4	0	genome.wustl.edu	37	7	37947093	37947093	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	37947093	37947093	C	T	SNP	SFRP4	ENST00000436072	human	ensembl	74_37	-1	known	silent	c.1029	p.P343	0.000	NULL	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP4	HGNC	ENSG00000106483				221	0	0	91	55	37.6712
EPDR1	0	genome.wustl.edu	37	7	37988556	37988556	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	37988556	37988556	T	C	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	silent	c.744	p.P248	0.003	pfam_Ependymin,smart_Ependymin,prints_Ependymin	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				146	0	0	73	35	32.4074
AMPH	0	genome.wustl.edu	37	7	38574563	38574563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	38574563	38574563	C	T	SNP	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	missense	c.118	p.E40K	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				71	0	0	48	19	28.3582
VPS41	0	genome.wustl.edu	37	7	38791871	38791871	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	38791871	38791871	G	A	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1831	p.R611C	1.000	pfam_Clathrin_H-chain/VPS_repeat,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				144	0	0	85	36	29.7521
VPS41	0	genome.wustl.edu	37	7	38796580	38796580	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	38796580	38796580	T	C	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1553	p.Y518C	1.000	pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				51	0	0	38	18	32.1429
CDK13	0	genome.wustl.edu	37	7	40132606	40132606	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	40132606	40132606	C	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.3458	p.S1153L	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				260	0	0	150	72	32.4324
CDK13	0	genome.wustl.edu	37	7	40133992	40133992	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	40133992	40133992	G	T	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	nonsense	c.3952	p.E1318*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				178	1	0.558659	85	66	43.7086
C7orf10	0	genome.wustl.edu	37	7	40228169	40228169	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	40228169	40228169	G	A	SNP	C7orf10	ENST00000309930	human	ensembl	74_37	+1	known	missense	c.323	p.R108Q	1.000	superfamily_CoA-Trfase_III_dom	pfam_CoA-Trfase_fam_III,superfamily_CoA-Trfase_III_dom	-	no_errors	C7orf10	HGNC	ENSG00000175600				24	0	0	13	6	31.5789
SDK1	0	genome.wustl.edu	37	7	4116768	4116768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	4116768	4116768	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.3149	p.A1050V	0.053	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				73	0	0	39	16	29.0909
INHBA	0	genome.wustl.edu	37	7	41729180	41729180	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	41729180	41729180	A	C	SNP	INHBA	ENST00000464515	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INHBA	HGNC	ENSG00000122641				42	0	0	30	10	25
GLI3	0	genome.wustl.edu	37	7	42003980	42003980	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	42003980	42003980	G	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.4691	p.S1564Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				81	0	0	26	14	35
GLI3	0	genome.wustl.edu	37	7	42004153	42004153	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	42004153	42004153	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.4518	p.F1506	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				109	0	0	49	17	25.7576
GLI3	0	genome.wustl.edu	37	7	42004714	42004714	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	42004714	42004714	T	C	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.3957	p.G1319	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				100	0	0	42	14	25
GLI3	0	genome.wustl.edu	37	7	42018306	42018306	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	42018306	42018306	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	silent	c.1539	p.F513	0.985	smart_Znf_C2H2-like	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				95	0	0	45	23	33.8235
C7orf25	0	genome.wustl.edu	37	7	42949774	42949774	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	42949774	42949774	G	A	SNP	C7orf25	ENST00000431882	human	ensembl	74_37	-1	known	silent	c.900	p.V300	0.810	pfam_DUF1308	pfam_DUF1308	-	no_errors	C7orf25	HGNC	ENSG00000136197				173	0	0	106	39	26.8966
BLVRA	0	genome.wustl.edu	37	7	43830923	43830923	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	43830923	43830923	C	T	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	silent	c.210	p.V70	0.673	pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				153	0	0	77	36	31.8584
BLVRA	0	genome.wustl.edu	37	7	43840110	43840110	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	43840110	43840110	C	T	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	silent	c.399	p.F133	0.995	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				93	0	0	45	18	28.5714
BLVRA	0	genome.wustl.edu	37	7	43846619	43846619	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	43846619	43846619	A	C	SNP	BLVRA	ENST00000265523	human	ensembl	74_37	+1	known	missense	c.676	p.N226H	0.939	pfam_Biliverdin_Rdtase_cat,pirsf_Biliverdin_Rdtase_A	pfam_Biliverdin_Rdtase_cat,pfam_Oxidoreductase_N,pirsf_Biliverdin_Rdtase_A	-	no_errors	BLVRA	HGNC	ENSG00000106605				97	0	0	45	20	30.7692
URGCP	0	genome.wustl.edu	37	7	43921522	43921522	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	43921522	43921522	G	A	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	silent	c.147	p.C49	0.622	NULL	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				247	0	0	150	71	32.1267
AEBP1	0	genome.wustl.edu	37	7	44150348	44150348	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44150348	44150348	C	T	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	silent	c.1425	p.F475	0.998	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				266	0	0	120	60	33.3333
AEBP1	0	genome.wustl.edu	37	7	44153214	44153214	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44153214	44153214	G	A	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.2831	p.R944Q	1.000	superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				122	0	0	49	27	35.5263
GCK	0	genome.wustl.edu	37	7	44190669	44190669	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44190669	44190669	G	A	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	silent	c.372	p.F124	0.971	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				75	0	0	45	17	27.4194
YKT6	0	genome.wustl.edu	37	7	44251851	44251851	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44251851	44251851	G	A	SNP	YKT6	ENST00000223369	human	ensembl	74_37	+1	known	silent	c.567	p.R189	1.000	pfam_Synaptobrevin,pfscan_Synaptobrevin	pfam_Synaptobrevin,superfamily_Longin-like_dom,pfscan_Longin_dom,pfscan_Synaptobrevin	-	no_errors	YKT6	HGNC	ENSG00000106636				278	0	0	146	74	33.6364
NPC1L1	0	genome.wustl.edu	37	7	44579499	44579499	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44579499	44579499	T	C	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	missense	c.497	p.E166G	0.973	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				101	0	0	32	23	41.8182
DDX56	0	genome.wustl.edu	37	7	44609623	44609623	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	44609623	44609623	C	T	SNP	DDX56	ENST00000258772	human	ensembl	74_37	-1	known	missense	c.1115	p.R372Q	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX56	HGNC	ENSG00000136271				61	0	0	26	15	36.5854
TBRG4	0	genome.wustl.edu	37	7	45139956	45139956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	45139956	45139956	G	A	SNP	TBRG4	ENST00000258770	human	ensembl	74_37	-1	known	missense	c.1864	p.R622C	0.991	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	TBRG4	HGNC	ENSG00000136270				57	0	0	22	16	42.1053
ADCY1	0	genome.wustl.edu	37	7	45662318	45662318	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	45662318	45662318	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.996	p.F332	0.550	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				37	0	0	22	10	31.25
ADCY1	0	genome.wustl.edu	37	7	45688281	45688281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	45688281	45688281	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	missense	c.1033	p.R345C	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				78	0	0	48	19	28.3582
ADCY1	0	genome.wustl.edu	37	7	45743055	45743055	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	45743055	45743055	C	T	SNP	ADCY1	ENST00000297323	human	ensembl	74_37	+1	known	silent	c.2535	p.V845	0.013	smart_A/G_cyclase	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY1	HGNC	ENSG00000164742				75	0	0	48	23	32.3944
IGFBP1	0	genome.wustl.edu	37	7	45931546	45931546	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	45931546	45931546	G	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	nonsense	c.535	p.E179*	0.949	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				52	0	0	36	14	28
TNS3	0	genome.wustl.edu	37	7	47341845	47341845	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47341845	47341845	G	A	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	silent	c.3483	p.I1161	0.011	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				100	1	0.990099	50	17	25.3731
C7orf65	0	genome.wustl.edu	37	7	47698352	47698352	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47698352	47698352	G	T	SNP	C7orf65	ENST00000408988	human	ensembl	74_37	+1	putative	missense	c.132	p.K44N	0.002	NULL	NULL	-	no_errors	C7orf65	HGNC	ENSG00000221845				40	0	0	24	12	33.3333
PKD1L1	0	genome.wustl.edu	37	7	47842892	47842892	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47842892	47842892	G	A	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.7878	p.C2626	0.004	pfam_PKD1_2_channel	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				88	0	0	48	18	27.2727
PKD1L1	0	genome.wustl.edu	37	7	47894612	47894612	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47894612	47894612	A	C	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.4727	p.F1576C	0.558	NULL	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				97	0	0	51	21	29.1667
PKD1L1	0	genome.wustl.edu	37	7	47898276	47898276	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47898276	47898276	A	G	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	silent	c.4357	p.L1453	0.000	pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				142	0	0	66	30	31.25
PKD1L1	0	genome.wustl.edu	37	7	47927693	47927693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	47927693	47927693	C	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.2731	p.E911K	0.766	pfam_PKD/REJ-like,pfscan_REJ-like	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				85	0	0	48	21	30.4348
ABCA13	0	genome.wustl.edu	37	7	48269512	48269512	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48269512	48269512	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.723	p.S241	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				155	0	0	70	36	33.9623
ABCA13	0	genome.wustl.edu	37	7	48311639	48311639	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48311639	48311639	A	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.2376	p.K792N	0.005	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				59	0	0	42	15	26.3158
ABCA13	0	genome.wustl.edu	37	7	48311803	48311803	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48311803	48311803	G	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.2540	p.R847I	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				57	0	0	45	19	29.6875
ABCA13	0	genome.wustl.edu	37	7	48314151	48314151	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48314151	48314151	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.4888	p.L1630F	0.050	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				210	0	0	126	72	36.3636
ABCA13	0	genome.wustl.edu	37	7	48315973	48315973	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48315973	48315973	T	C	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.6710	p.F2237S	0.221	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				10	0	0	18	5	21.7391
ABCA13	0	genome.wustl.edu	37	7	48318153	48318153	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	48318153	48318153	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.7362	p.T2454	0.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				108	0	0	104	32	23.5294
ZPBP	0	genome.wustl.edu	37	7	49977177	49977177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	49977177	49977177	G	A	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.1003	p.H335Y	0.998	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				159	0	0	82	51	38.3459
ZPBP	0	genome.wustl.edu	37	7	50023074	50023074	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	50023074	50023074	T	G	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.825	p.E275D	1.000	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813				39	0	0	37	18	32.7273
POM121L12	0	genome.wustl.edu	37	7	53103453	53103453	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	53103453	53103453	C	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.89	p.A30E	0.001	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				46	0	0	41	10	19.6078
TNRC18	0	genome.wustl.edu	37	7	5372633	5372633	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5372633	5372633	T	C	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.5767	p.K1923E	0.998	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				11	0	0	7	5	41.6667
TNRC18	0	genome.wustl.edu	37	7	5410840	5410840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5410840	5410840	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.3385	p.E1129K	0.994	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				56	0	0	19	10	34.4828
TNRC18	0	genome.wustl.edu	37	7	5415827	5415827	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5415827	5415827	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.2637	p.P879	0.946	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				9	0	0	6	5	45.4545
VSTM2A	0	genome.wustl.edu	37	7	54617880	54617880	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	54617880	54617880	C	T	SNP	VSTM2A	ENST00000402026	human	ensembl	74_37	+1	known	silent	c.648	p.F216	0.999	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM2A	HGNC	ENSG00000170419				8	0	0	9	3	25
EGFR	0	genome.wustl.edu	37	7	55221711	55221711	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	55221711	55221711	G	A	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.755	p.R252H	0.994	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				141	0	0	73	37	33.6364
SEPT14	0	genome.wustl.edu	37	7	55912390	55912390	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	55912390	55912390	G	A	SNP	SEPT14	ENST00000388975	human	ensembl	74_37	-1	known	missense	c.197	p.S66L	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997				47	0	0	28	15	34.8837
ZNF713	0	genome.wustl.edu	37	7	55990859	55990859	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	55990859	55990859	C	A	SNP	ZNF713	ENST00000429591	human	ensembl	74_37	+1	known	nonsense	c.53	p.S18*	0.999	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF713	HGNC	ENSG00000178665				108	0	0	66	6	8.33333
GBAS	0	genome.wustl.edu	37	7	56045869	56045869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	56045869	56045869	C	T	SNP	GBAS	ENST00000322090	human	ensembl	74_37	+1	known	missense	c.143	p.S48F	1.000	NULL	pfam_NIPSNAP,superfamily_Dimeric_a/b-barrel	-	no_errors	GBAS	HGNC	ENSG00000146729				170	0	0	93	33	26.1905
RNF216	0	genome.wustl.edu	37	7	5662563	5662563	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5662563	5662563	G	A	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	silent	c.2700	p.F900	0.045	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				292	0	0	126	76	37.6238
ZNF479	0	genome.wustl.edu	37	7	57187836	57187836	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57187836	57187836	C	A	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.1286	p.R429I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				86	0	0	50	20	28.5714
ZNF479	0	genome.wustl.edu	37	7	57188256	57188256	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57188256	57188256	C	A	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	missense	c.866	p.R289I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				68	0	0	43	27	38.5714
ZNF716	0	genome.wustl.edu	37	7	57528892	57528892	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57528892	57528892	G	T	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.725	p.R242I	0.087	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				18	0	0	14	17	54.8387
ZNF716	0	genome.wustl.edu	37	7	57529114	57529114	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57529114	57529114	G	T	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.947	p.R316I	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				36	0	0	32	15	31.9149
ZNF716	0	genome.wustl.edu	37	7	57529466	57529466	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57529466	57529466	G	A	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	silent	c.1299	p.E433	0.891	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				16	0	0	20	5	20
ZNF716	0	genome.wustl.edu	37	7	57529580	57529580	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	57529580	57529580	A	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.1413	p.Q471H	0.772	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				12	0	0	15	3	16.6667
RNF216	0	genome.wustl.edu	37	7	5780605	5780605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5780605	5780605	G	A	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.1043	p.T348M	1.000	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				80	0	0	48	21	30.4348
RNF216	0	genome.wustl.edu	37	7	5792512	5792512	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	5792512	5792512	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.166	p.E56K	1.000	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				49	0	0	28	13	31.7073
ZNF727	0	genome.wustl.edu	37	7	63538506	63538506	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	63538506	63538506	G	T	SNP	ZNF727	ENST00000550760	human	ensembl	74_37	+1	known	missense	c.1079	p.R360I	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF727	HGNC	ENSG00000257482				11	0	0	8	3	27.2727
ZNF727	0	genome.wustl.edu	37	7	63538809	63538809	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	63538809	63538809	T	C	SNP	ZNF727	ENST00000550760	human	ensembl	74_37	+1	known	missense	c.1382	p.F461S	0.808	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF727	HGNC	ENSG00000257482				9	0	0	5	4	44.4444
ZNF736	0	genome.wustl.edu	37	7	63797318	63797318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	63797318	63797318	C	T	SNP	ZNF736	ENST00000355095	human	ensembl	74_37	+1	known	missense	c.184	p.P62S	0.144	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF736	HGNC	ENSG00000234444				14	0	0	9	3	25
ZNF680	0	genome.wustl.edu	37	7	63982024	63982024	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	63982024	63982024	T	G	SNP	ZNF680	ENST00000309683	human	ensembl	74_37	-1	known	missense	c.1108	p.K370Q	0.949	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041				41	0	0	33	16	32.6531
ZNF107	0	genome.wustl.edu	37	7	64167547	64167547	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64167547	64167547	A	G	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	missense	c.865	p.K289E	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				53	0	0	42	18	30
ZNF107	0	genome.wustl.edu	37	7	64167657	64167657	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64167657	64167657	G	T	SNP	ZNF107	ENST00000344930	human	ensembl	74_37	+1	known	missense	c.975	p.E325D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF107	HGNC	ENSG00000196247				46	0	0	36	9	20
ZNF273	0	genome.wustl.edu	37	7	64389307	64389307	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64389307	64389307	A	C	SNP	ZNF273	ENST00000476120	human	ensembl	74_37	+1	known	missense	c.1601	p.K534T	0.101	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF273	HGNC	ENSG00000198039				98	0	0	70	39	35.7798
ZNF117	0	genome.wustl.edu	37	7	64439395	64439395	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64439395	64439395	C	A	SNP	ZNF117	ENST00000282869	human	ensembl	74_37	-1	known	missense	c.554	p.R185I	0.908	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF117	HGNC	ENSG00000152926				68	0	0	68	8	10.5263
INTS4L1	0	genome.wustl.edu	37	7	64639744	64639744	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64639744	64639744	G	A	SNP	INTS4L1	ENST00000587624	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	INTS4L1	HGNC	ENSG00000164669				29	0	0	15	12	44.4444
ZNF92	0	genome.wustl.edu	37	7	64852845	64852845	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64852845	64852845	G	T	SNP	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	nonsense	c.34	p.E12*	0.036	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				106	0	0	85	38	30.8943
ZNF92	0	genome.wustl.edu	37	7	64864067	64864067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64864067	64864067	G	A	SNP	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	missense	c.1040	p.G347D	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				34	0	0	36	13	26.5306
ZNF92	0	genome.wustl.edu	37	7	64864785	64864785	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	64864785	64864785	C	T	SNP	ZNF92	ENST00000328747	human	ensembl	74_37	+1	known	silent	c.1758	p.T586	0.988	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF92	HGNC	ENSG00000146757				71	0	0	48	13	21.3115
GUSB	0	genome.wustl.edu	37	7	65444478	65444478	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	65444478	65444478	T	G	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	missense	c.632	p.Y211S	1.000	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919				118	0	0	61	31	33.6957
GTF2IRD1P1	0	genome.wustl.edu	37	7	66290287	66290287	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	66290287	66290287	T	G	SNP	GTF2IRD1P1	ENST00000457166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	GTF2IRD1P1	HGNC	ENSG00000230583				24	0	0	6	4	40
GTF2IRD1P1	0	genome.wustl.edu	37	7	66304891	66304891	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	66304891	66304891	G	A	SNP	GTF2IRD1P1	ENST00000457166	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.730	-	-	-	no_errors	GTF2IRD1P1	HGNC	ENSG00000230583				63	0	0	38	24	38.7097
ZNF12	0	genome.wustl.edu	37	7	6731035	6731035	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	6731035	6731035	C	A	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	missense	c.1538	p.R513I	0.957	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				102	0	0	79	33	29.4643
PMS2CL	0	genome.wustl.edu	37	7	6781334	6781334	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	6781334	6781334	A	C	SNP	PMS2CL	ENST00000431453	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953				21	0	0	17	11	39.2857
RSPH10B2	0	genome.wustl.edu	37	7	6805365	6805365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	6805365	6805365	C	T	SNP	RSPH10B2	ENST00000297186	human	ensembl	74_37	+1	known	missense	c.602	p.T201M	0.995	NULL	pfam_MORN,smart_MORN	-	no_errors	RSPH10B2	HGNC	ENSG00000169402				113	0	0	67	14	17.284
CCZ1B	0	genome.wustl.edu	37	7	6851624	6851624	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	6851624	6851624	T	A	SNP	CCZ1B	ENST00000316731	human	ensembl	74_37	-1	known	missense	c.913	p.T305S	1.000	pfam_DUF1712_fun	pfam_DUF1712_fun	-	no_errors	CCZ1B	HGNC	ENSG00000146574				74	0	0	53	34	39.0805
WBSCR17	0	genome.wustl.edu	37	7	71177108	71177108	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	71177108	71177108	A	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.1774	p.T592A	1.000	superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				125	1	0.793651	46	22	32.3529
TYW1B	0	genome.wustl.edu	37	7	72081692	72081692	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72081692	72081692	C	T	SNP	TYW1B	ENST00000343721	human	ensembl	74_37	-1	known	missense	c.628	p.E210K	1.000	pfam_tRNA_wybutosine-synth	pfam_rSAM,pfam_tRNA_wybutosine-synth	-	no_errors	TYW1B	HGNC	ENSG00000254184				158	0	0	78	35	30.9735
POM121	0	genome.wustl.edu	37	7	72413036	72413036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72413036	72413036	C	T	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.2504	p.A835V	0.000	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				22	0	0	3	8	72.7273
STAG3L3	0	genome.wustl.edu	37	7	72440591	72440591	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72440591	72440591	A	C	SNP	STAG3L3	ENST00000436857	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.951	-	-	-	no_errors	STAG3L3	HGNC	ENSG00000174353				13	0	0	7	5	41.6667
GTF2IRD2P1	0	genome.wustl.edu	37	7	72657577	72657577	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72657577	72657577	G	A	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				203	0	0	78	51	39.5349
GTF2IRD2P1	0	genome.wustl.edu	37	7	72657673	72657673	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72657673	72657673	G	A	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.256	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				226	0	0	107	61	36.3095
C1GALT1	0	genome.wustl.edu	37	7	7278086	7278086	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	7278086	7278086	G	T	SNP	C1GALT1	ENST00000223122	human	ensembl	74_37	+1	known	missense	c.421	p.D141Y	1.000	pfam_Fringe-like,pfam_Glyco_trans_31	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392				98	0	0	67	30	30.9278
C1GALT1	0	genome.wustl.edu	37	7	7278461	7278461	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	7278461	7278461	T	A	SNP	C1GALT1	ENST00000223122	human	ensembl	74_37	+1	known	missense	c.796	p.F266I	1.000	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392				61	0	0	42	22	34.375
BAZ1B	0	genome.wustl.edu	37	7	72863979	72863979	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	72863979	72863979	T	G	SNP	BAZ1B	ENST00000339594	human	ensembl	74_37	-1	known	missense	c.3621	p.K1207N	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_WSTF_Acf1_Cbp146,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_WSTF_Acf1_Cbp146,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ1B	HGNC	ENSG00000009954				83	0	0	39	32	45.0704
MLXIPL	0	genome.wustl.edu	37	7	73008305	73008305	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	73008305	73008305	T	C	SNP	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	missense	c.2449	p.N817D	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				76	0	0	28	19	40.4255
WBSCR28	0	genome.wustl.edu	37	7	73279635	73279635	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	73279635	73279635	G	T	SNP	WBSCR28	ENST00000320531	human	ensembl	74_37	+1	known	missense	c.385	p.D129Y	0.085	NULL	NULL	-	no_errors	WBSCR28	HGNC	ENSG00000175877				82	0	0	39	17	30.3571
ELN	0	genome.wustl.edu	37	7	73471762	73471762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	73471762	73471762	G	A	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	missense	c.1408	p.A470T	0.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				36	0	0	21	3	12.5
GTF2IRD1	0	genome.wustl.edu	37	7	73960133	73960133	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	73960133	73960133	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	nonsense	c.1726	p.R576*	0.263	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				75	0	0	22	14	38.8889
GTF2IRD1	0	genome.wustl.edu	37	7	74015485	74015485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	74015485	74015485	C	T	SNP	GTF2IRD1	ENST00000265755	human	ensembl	74_37	+1	known	missense	c.2789	p.S930L	0.019	NULL	pfam_GTF2I,superfamily_GTF2I,pirsf_TF_II-I,pfscan_GTF2I	-	no_errors	GTF2IRD1	HGNC	ENSG00000006704				29	0	0	12	4	25
GTF2IRD2	0	genome.wustl.edu	37	7	74211875	74211875	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	74211875	74211875	G	T	SNP	GTF2IRD2	ENST00000405086	human	ensembl	74_37	-1	known	nonsense	c.1976	p.S659*	0.086	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275				82	0	0	30	18	37.5
GTF2IRD2	0	genome.wustl.edu	37	7	74212283	74212283	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	74212283	74212283	A	G	SNP	GTF2IRD2	ENST00000405086	human	ensembl	74_37	-1	known	missense	c.1568	p.V523A	0.219	NULL	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2	HGNC	ENSG00000196275				49	0	0	24	6	20
GTF2IRD2B	0	genome.wustl.edu	37	7	74564459	74564459	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	74564459	74564459	T	C	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	74_37	+1	known	missense	c.2206	p.S736P	0.719	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428				10	0	0	7	7	50
GTF2IRD2B	0	genome.wustl.edu	37	7	74565059	74565059	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	74565059	74565059	T	C	SNP	GTF2IRD2B	ENST00000312575	human	ensembl	74_37	+1	known	silent	c.2806	p.L936	0.106	superfamily_RNaseH-like_dom	pfam_GTF2I,superfamily_GTF2I,superfamily_RNaseH-like_dom,pfscan_GTF2I	-	no_errors	GTF2IRD2B	HGNC	ENSG00000174428				39	0	0	23	4	14.8148
COL28A1	0	genome.wustl.edu	37	7	7493131	7493131	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	7493131	7493131	T	G	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	missense	c.1380	p.Q460H	1.000	NULL	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				110	0	0	72	29	28.7129
POM121C	0	genome.wustl.edu	37	7	75052307	75052307	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	75052307	75052307	C	T	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.1954	p.D652N	0.013	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				74	0	0	34	21	38.1818
LOC101927126	0	genome.wustl.edu	37	7	75738085	75738085	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	75738085	75738085	A	C	SNP	LOC101927126	ENST00000434037	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	AC005077.12	Clone_based_vega_gene	ENSG00000227038				10	0	0	11	6	35.2941
CCDC146	0	genome.wustl.edu	37	7	76916866	76916866	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	76916866	76916866	A	C	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	missense	c.2387	p.K796T	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				77	0	0	40	11	21.5686
CCDC146	0	genome.wustl.edu	37	7	76922474	76922474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	76922474	76922474	G	A	SNP	CCDC146	ENST00000285871	human	ensembl	74_37	+1	known	missense	c.2621	p.R874Q	1.000	NULL	NULL	-	no_errors	CCDC146	HGNC	ENSG00000135205				169	0	0	107	43	28.6667
PTPN12	0	genome.wustl.edu	37	7	77268548	77268548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	77268548	77268548	G	A	SNP	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	missense	c.2294	p.R765Q	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				82	0	0	45	19	29.6875
TMEM60	0	genome.wustl.edu	37	7	77423307	77423307	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	77423307	77423307	G	T	SNP	TMEM60	ENST00000257663	human	ensembl	74_37	-1	known	silent	c.384	p.V128	0.982	NULL	pfam_TM_Fragile-X-F-assoc	-	no_errors	TMEM60	HGNC	ENSG00000135211				91	0	0	64	30	31.9149
MAGI2	0	genome.wustl.edu	37	7	77789413	77789413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	77789413	77789413	C	T	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.2774	p.R925H	1.000	pfam_PDZ,superfamily_PDZ,pfscan_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				89	0	0	52	23	30.6667
MAGI2	0	genome.wustl.edu	37	7	77830508	77830508	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	77830508	77830508	A	C	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	missense	c.2050	p.F684V	1.000	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				44	0	0	39	15	27.7778
SEMA3C	0	genome.wustl.edu	37	7	80418725	80418725	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	80418725	80418725	C	T	SNP	SEMA3C	ENST00000544525	human	ensembl	74_37	-1	known	silent	c.1305	p.R435	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Ig_I-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3C	HGNC	ENSG00000075223				182	0	0	89	42	32.0611
PCLO	0	genome.wustl.edu	37	7	82390067	82390067	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82390067	82390067	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.15176	p.S5059Y	0.999	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				37	0	0	28	14	33.3333
PCLO	0	genome.wustl.edu	37	7	82578855	82578855	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82578855	82578855	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.11049	p.K3683	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				350	1	0.2849	173	87	33.4615
PCLO	0	genome.wustl.edu	37	7	82579967	82579967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82579967	82579967	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.9937	p.R3313W	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				184	0	0	85	11	11.4583
PCLO	0	genome.wustl.edu	37	7	82583601	82583601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82583601	82583601	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.6668	p.S2223F	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				42	0	0	25	8	24.2424
PCLO	0	genome.wustl.edu	37	7	82764042	82764042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82764042	82764042	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.2824	p.A942T	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				43	0	0	33	14	29.7872
PCLO	0	genome.wustl.edu	37	7	82764221	82764221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	82764221	82764221	C	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.2645	p.R882Q	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				371	0	0	229	91	28.4375
SEMA3E	0	genome.wustl.edu	37	7	83032082	83032082	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	83032082	83032082	G	A	SNP	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	nonsense	c.1009	p.R337*	0.961	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381				45	0	0	29	13	30.9524
SEMA3A	0	genome.wustl.edu	37	7	83606510	83606510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	83606510	83606510	C	T	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.1655	p.R552H	1.000	superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				91	0	0	81	23	22.1154
SEMA3A	0	genome.wustl.edu	37	7	83764139	83764139	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	83764139	83764139	C	T	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	missense	c.241	p.D81N	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213				87	0	0	49	30	37.9747
GRM3	0	genome.wustl.edu	37	7	86416107	86416107	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	86416107	86416107	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	silent	c.999	p.F333	0.995	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				67	0	0	29	14	32.5581
GRM3	0	genome.wustl.edu	37	7	86468223	86468223	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	86468223	86468223	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	nonsense	c.1393	p.R465*	0.677	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				47	0	0	27	16	37.2093
KIAA1324L	0	genome.wustl.edu	37	7	86521160	86521160	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	86521160	86521160	T	G	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.2910	p.K970N	1.000	NULL	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				61	0	0	35	24	40.678
CROT	0	genome.wustl.edu	37	7	87005144	87005144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87005144	87005144	G	A	SNP	CROT	ENST00000331536	human	ensembl	74_37	+1	known	missense	c.751	p.A251T	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				70	0	0	57	7	10.9375
CROT	0	genome.wustl.edu	37	7	87020970	87020970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87020970	87020970	G	A	SNP	CROT	ENST00000331536	human	ensembl	74_37	+1	known	missense	c.1367	p.R456Q	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CROT	HGNC	ENSG00000005469				82	0	0	66	14	17.5
ABCB4	0	genome.wustl.edu	37	7	87092105	87092105	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87092105	87092105	A	C	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.255	p.F85L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				71	0	0	77	6	7.22892
ABCB1	0	genome.wustl.edu	37	7	87144576	87144576	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87144576	87144576	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.3253	p.R1085W	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				74	0	0	49	23	31.9444
ABCB1	0	genome.wustl.edu	37	7	87150189	87150189	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87150189	87150189	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.2689	p.A897T	0.997	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				68	0	0	36	22	37.931
ABCB1	0	genome.wustl.edu	37	7	87178674	87178674	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87178674	87178674	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	missense	c.1715	p.A572V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				68	0	0	34	18	34.6154
RUNDC3B	0	genome.wustl.edu	37	7	87436797	87436797	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87436797	87436797	A	G	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	missense	c.1117	p.T373A	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				72	0	0	63	31	32.9787
RUNDC3B	0	genome.wustl.edu	37	7	87459269	87459269	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87459269	87459269	T	G	SNP	RUNDC3B	ENST00000338056	human	ensembl	74_37	+1	known	missense	c.1346	p.L449R	1.000	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC3B	HGNC	ENSG00000105784				112	0	0	74	27	26.7327
ADAM22	0	genome.wustl.edu	37	7	87759747	87759747	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87759747	87759747	G	A	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	silent	c.798	p.A266	0.006	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				88	0	0	74	25	25.2525
ADAM22	0	genome.wustl.edu	37	7	87811315	87811315	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87811315	87811315	T	G	SNP	ADAM22	ENST00000265727	human	ensembl	74_37	+1	known	missense	c.2552	p.F851C	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM22	HGNC	ENSG00000008277				75	0	0	56	27	32.5301
SRI	0	genome.wustl.edu	37	7	87840206	87840206	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87840206	87840206	T	C	SNP	SRI	ENST00000265729	human	ensembl	74_37	-1	known	silent	c.240	p.S80	0.995	smart_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SRI	HGNC	ENSG00000075142				56	0	0	34	40	54.0541
STEAP4	0	genome.wustl.edu	37	7	87912071	87912071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	87912071	87912071	C	T	SNP	STEAP4	ENST00000380079	human	ensembl	74_37	-1	known	missense	c.869	p.R290Q	1.000	pfam_Fe3_Rdtase_TM_dom	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP4	HGNC	ENSG00000127954				100	0	0	44	23	34.3284
ENSG00000207094	0	genome.wustl.edu	37	7	88078510	88078510	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	88078510	88078510	C	T	SNP	ENSG00000207094	ENST00000384366	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.012	-	-	-	no_errors	SNORA67	RFAM	ENSG00000207094				17	0	0	11	5	31.25
ZNF804B	0	genome.wustl.edu	37	7	88962747	88962747	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	88962747	88962747	T	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.451	p.F151I	0.992	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				64	0	0	54	21	28
ZNF804B	0	genome.wustl.edu	37	7	88964416	88964416	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	88964416	88964416	G	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.2120	p.R707I	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				61	0	0	37	17	31.4815
ZNF804B	0	genome.wustl.edu	37	7	88965794	88965794	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	88965794	88965794	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	silent	c.3498	p.Q1166	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				107	0	0	67	29	30.2083
ZNF804B	0	genome.wustl.edu	37	7	88966008	88966008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	88966008	88966008	C	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.3712	p.L1238I	0.717	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				222	0	0	123	54	30.5085
STEAP1	0	genome.wustl.edu	37	7	89790273	89790273	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	89790273	89790273	T	G	SNP	STEAP1	ENST00000297205	human	ensembl	74_37	+1	known	missense	c.239	p.I80S	0.040	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP1	HGNC	ENSG00000164647				209	0	0	119	56	32
AKAP9	0	genome.wustl.edu	37	7	91632062	91632062	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	91632062	91632062	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.2867	p.K956T	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				68	0	0	48	35	42.1687
AKAP9	0	genome.wustl.edu	37	7	91672072	91672072	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	91672072	91672072	T	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.5185	p.L1729V	0.667	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				92	0	0	63	29	31.5217
AKAP9	0	genome.wustl.edu	37	7	91699510	91699510	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	91699510	91699510	C	A	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.6533	p.T2178N	0.966	superfamily_Prefoldin	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				106	0	0	92	36	28.125
AKAP9	0	genome.wustl.edu	37	7	91707053	91707053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	91707053	91707053	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.6845	p.A2282V	0.243	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				135	0	0	84	31	26.9565
AKAP9	0	genome.wustl.edu	37	7	91708440	91708440	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	91708440	91708440	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.7029	p.I2343M	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				60	0	0	32	25	43.8596
ERVW-1	0	genome.wustl.edu	37	7	92098549	92098549	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92098549	92098549	G	A	SNP	ERVW-1	ENST00000493463	human	ensembl	74_37	-1	known	nonsense	c.1147	p.R383*	0.554	pfam_TLV/ENV_coat_polyprotein	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVW-1	HGNC	ENSG00000242950				41	0	0	16	13	44.8276
PEX1	0	genome.wustl.edu	37	7	92143246	92143246	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92143246	92143246	T	G	SNP	PEX1	ENST00000248633	human	ensembl	74_37	-1	known	missense	c.1275	p.E425D	1.000	NULL	pfam_ATPase_AAA_core,pfam_Peroxisome_synth_fac_1_a/b,pfam_PEX-1N,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	PEX1	HGNC	ENSG00000127980				142	0	0	93	40	30.0752
CDK6	0	genome.wustl.edu	37	7	92247479	92247479	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92247479	92247479	A	C	SNP	CDK6	ENST00000265734	human	ensembl	74_37	-1	known	silent	c.741	p.V247	0.971	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK6	HGNC	ENSG00000105810				69	0	0	65	10	13.3333
SAMD9L	0	genome.wustl.edu	37	7	92762803	92762803	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92762803	92762803	G	A	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	nonsense	c.2482	p.R828*	0.000	superfamily_P-loop_NTPase	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				142	0	0	42	87	67.4419
SAMD9L	0	genome.wustl.edu	37	7	92762825	92762825	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92762825	92762825	G	A	SNP	SAMD9L	ENST00000318238	human	ensembl	74_37	-1	known	silent	c.2460	p.S820	0.000	superfamily_P-loop_NTPase	superfamily_SAM/pointed,superfamily_P-loop_NTPase,pfscan_SAM	-	no_errors	SAMD9L	HGNC	ENSG00000177409				134	0	0	88	43	32.8244
CCDC132	0	genome.wustl.edu	37	7	92923915	92923915	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	92923915	92923915	G	T	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.1134	p.K378N	1.000	NULL	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				89	0	0	109	54	33.1288
COL1A2	0	genome.wustl.edu	37	7	94043236	94043236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	94043236	94043236	C	T	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.1642	p.P548S	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				63	0	0	25	14	35.8974
COL1A2	0	genome.wustl.edu	37	7	94057135	94057135	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	94057135	94057135	C	A	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.3464	p.S1155Y	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				68	0	0	43	21	32.8125
PEG10	0	genome.wustl.edu	37	7	94293682	94293682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	94293682	94293682	G	A	SNP	PEG10	ENST00000482108	human	ensembl	74_37	+1	known	missense	c.814	p.E272K	0.991	superfamily_Znf_CCHC	pfam_Retrotrans_gag_dom,superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PEG10	HGNC	ENSG00000242265				26	0	0	10	7	41.1765
PPP1R9A	0	genome.wustl.edu	37	7	94540365	94540365	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	94540365	94540365	G	A	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	missense	c.940	p.D314N	0.016	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				62	0	0	48	12	20
PPP1R9A	0	genome.wustl.edu	37	7	94913409	94913409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	94913409	94913409	C	T	SNP	PPP1R9A	ENST00000289495	human	ensembl	74_37	+1	known	missense	c.3256	p.P1086S	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,superfamily_Smac_DIABLO-like,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	PPP1R9A	HGNC	ENSG00000158528				47	0	0	40	22	35.4839
PON3	0	genome.wustl.edu	37	7	95001600	95001600	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	95001600	95001600	T	G	SNP	PON3	ENST00000265627	human	ensembl	74_37	-1	known	missense	c.252	p.K84N	0.984	NULL	pfam_Arylesterase,pfam_SGL,pfam_Strictosidine_synth_cons-reg,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON3	HGNC	ENSG00000105852				75	0	0	51	41	44.5652
PDK4	0	genome.wustl.edu	37	7	95223071	95223071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	95223071	95223071	C	T	SNP	PDK4	ENST00000005178	human	ensembl	74_37	-1	known	missense	c.284	p.S95N	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799				82	0	0	58	26	30.9524
PDK4	0	genome.wustl.edu	37	7	95224379	95224379	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	95224379	95224379	C	T	SNP	PDK4	ENST00000005178	human	ensembl	74_37	-1	known	silent	c.228	p.P76	0.830	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799				160	0	0	103	52	33.5484
SHFM1	0	genome.wustl.edu	37	7	96339061	96339061	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	96339061	96339061	C	T	SNP	SHFM1	ENST00000449279	human	ensembl	74_37	-1	known	silent	c.15	p.K5	1.000	pfam_DSS1_SEM1	pfam_DSS1_SEM1	-	no_errors	SHFM1	HGNC	ENSG00000127922				218	0	0	128	47	26.8571
ASNS	0	genome.wustl.edu	37	7	97488685	97488685	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	97488685	97488685	C	T	SNP	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	silent	c.513	p.A171	0.000	tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				111	0	0	48	20	29.4118
ASNS	0	genome.wustl.edu	37	7	97493736	97493736	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	97493736	97493736	C	T	SNP	ASNS	ENST00000175506	human	ensembl	74_37	-1	known	missense	c.322	p.G108R	1.000	tigrfam_Asn_synth_AEB	pfam_Asn_synthase,pfam_GATase_dom,tigrfam_Asn_synth_AEB	-	no_errors	ASNS	HGNC	ENSG00000070669				50	0	0	36	15	29.4118
TRRAP	0	genome.wustl.edu	37	7	98508728	98508728	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	98508728	98508728	A	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.1841	p.Y614C	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				84	0	0	31	22	41.5094
TRRAP	0	genome.wustl.edu	37	7	98608819	98608819	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	98608819	98608819	T	G	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.11041	p.F3681V	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				192	0	0	97	60	38.2166
SMURF1	0	genome.wustl.edu	37	7	98655153	98655153	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	98655153	98655153	C	T	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	silent	c.225	p.S75	0.778	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				49	0	0	33	12	26.6667
PDAP1	0	genome.wustl.edu	37	7	98995514	98995514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	98995514	98995514	G	A	SNP	PDAP1	ENST00000350498	human	ensembl	74_37	-1	known	missense	c.458	p.A153V	1.000	pfam_Casein_kinase_sb_PP28	pfam_Casein_kinase_sb_PP28	-	no_errors	PDAP1	HGNC	ENSG00000106244				149	0	0	64	39	37.8641
ZNF655	0	genome.wustl.edu	37	7	99171030	99171030	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99171030	99171030	G	T	SNP	ZNF655	ENST00000424881	human	ensembl	74_37	+1	known	missense	c.1404	p.E468D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343				204	0	0	171	11	6.04396
ZNF655	0	genome.wustl.edu	37	7	99171035	99171035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99171035	99171035	C	T	SNP	ZNF655	ENST00000424881	human	ensembl	74_37	+1	known	missense	c.1409	p.S470L	0.846	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343				214	0	0	133	52	28.1081
CYP3A7	0	genome.wustl.edu	37	7	99311124	99311124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99311124	99311124	G	A	SNP	CYP3A7	ENST00000336374	human	ensembl	74_37	-1	known	missense	c.833	p.S278F	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP3A7	HGNC	ENSG00000160870				94	0	0	70	24	25.5319
CYP3A43	0	genome.wustl.edu	37	7	99447290	99447290	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99447290	99447290	T	A	SNP	CYP3A43	ENST00000222382	human	ensembl	74_37	+1	known	missense	c.643	p.F215I	0.018	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_CYP3A,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP3A43	HGNC	ENSG00000021461				79	0	0	34	30	46.875
GAL3ST4	0	genome.wustl.edu	37	7	99757915	99757915	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99757915	99757915	T	C	SNP	GAL3ST4	ENST00000360039	human	ensembl	74_37	-1	known	missense	c.1097	p.D366G	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093				187	1	0.531915	77	49	38.8889
GPC2	0	genome.wustl.edu	37	7	99768093	99768093	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	7	99768093	99768093	G	A	SNP	GPC2	ENST00000292377	human	ensembl	74_37	-1	known	silent	c.1500	p.S500	0.934	pfam_Glypican	pfam_Glypican	-	no_errors	GPC2	HGNC	ENSG00000213420				34	0	0	18	8	30.7692
VPS13B	0	genome.wustl.edu	37	8	100168882	100168882	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	100168882	100168882	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.2119	p.Y707H	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				169	0	0	101	55	35.2564
VPS13B	0	genome.wustl.edu	37	8	100493895	100493895	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	100493895	100493895	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	silent	c.3735	p.N1245	0.935	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				170	0	0	171	9	5
VPS13B	0	genome.wustl.edu	37	8	100568703	100568703	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	100568703	100568703	C	T	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	nonsense	c.4846	p.R1616*	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				61	0	0	39	12	23.5294
RGS22	0	genome.wustl.edu	37	8	101016202	101016202	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101016202	101016202	T	G	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.2579	p.K860T	0.998	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				75	0	0	51	26	33.7662
POLR2K	0	genome.wustl.edu	37	8	101164150	101164150	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101164150	101164150	C	A	SNP	POLR2K	ENST00000522439	human	ensembl	74_37	+1	putative	missense	c.160	p.L54I	1.000	smart_RNAP_P/RPC10	pfam_RNAP_P/RPC10,smart_RNAP_P/RPC10	-	no_errors	POLR2K	HGNC	ENSG00000147669				38	0	0	29	20	40.8163
SPAG1	0	genome.wustl.edu	37	8	101174630	101174630	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101174630	101174630	A	C	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.122	p.K41T	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				23	0	0	16	13	44.8276
SPAG1	0	genome.wustl.edu	37	8	101178199	101178199	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101178199	101178199	A	C	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.298	p.K100Q	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				42	0	0	28	16	36.3636
SPAG1	0	genome.wustl.edu	37	8	101196205	101196205	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101196205	101196205	T	C	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	silent	c.510	p.C170	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				63	0	0	44	17	27.8689
SPAG1	0	genome.wustl.edu	37	8	101243400	101243400	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101243400	101243400	A	C	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	missense	c.1872	p.K624N	0.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				75	0	0	69	26	27.3684
ANKRD46	0	genome.wustl.edu	37	8	101540171	101540171	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	101540171	101540171	G	T	SNP	ANKRD46	ENST00000520552	human	ensembl	74_37	-1	known	silent	c.372	p.V124	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD46	HGNC	ENSG00000186106				153	0	0	95	37	28.0303
UBR5	0	genome.wustl.edu	37	8	103357626	103357626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	103357626	103357626	C	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.884	p.R295Q	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				17	0	0	8	6	42.8571
ODF1	0	genome.wustl.edu	37	8	103572953	103572953	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	103572953	103572953	C	T	SNP	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	silent	c.594	p.I198	0.987	pfscan_a-crystallin/Hsp20_dom	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087				91	0	0	49	11	18.3333
PRSS55	0	genome.wustl.edu	37	8	10396280	10396280	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	10396280	10396280	T	C	SNP	PRSS55	ENST00000328655	human	ensembl	74_37	+1	known	silent	c.1036	p.L346	0.000	NULL	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS55	HGNC	ENSG00000184647				289	0	0	84	68	44.7368
RP1L1	0	genome.wustl.edu	37	8	10466733	10466733	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	10466733	10466733	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	silent	c.4875	p.G1625	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				47	0	0	11	19	63.3333
RP1L1	0	genome.wustl.edu	37	8	10469605	10469605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	10469605	10469605	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.2003	p.S668F	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				189	0	0	36	33	47.8261
RIMS2	0	genome.wustl.edu	37	8	104897838	104897838	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	104897838	104897838	G	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1011	p.P337	0.977	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				46	0	0	32	24	42.8571
RIMS2	0	genome.wustl.edu	37	8	104922574	104922574	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	104922574	104922574	A	C	SNP	RIMS2	ENST00000262231	human	ensembl	74_37	+1	known	missense	c.1074	p.K358N	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				103	0	0	102	49	32.4503
RIMS2	0	genome.wustl.edu	37	8	105105866	105105866	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	105105866	105105866	A	C	SNP	RIMS2	ENST00000436393	human	ensembl	74_37	+1	novel	missense	c.2889	p.K963N	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RIMS2	HGNC	ENSG00000176406				64	0	0	45	13	22.4138
RIMS2	0	genome.wustl.edu	37	8	105261818	105261818	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	105261818	105261818	T	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	splice_site	c.3691+2	e22+2	1.000	-	-	-	no_errors	RIMS2	HGNC	ENSG00000176406				35	0	0	16	26	61.9048
RIMS2	0	genome.wustl.edu	37	8	105263353	105263353	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	105263353	105263353	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.3793	p.L1265V	0.984	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				35	0	0	27	11	28.9474
LRP12	0	genome.wustl.edu	37	8	105503537	105503537	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	105503537	105503537	A	C	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.1887	p.F629L	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				100	0	0	55	33	37.5
SOX7	0	genome.wustl.edu	37	8	10583616	10583616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	10583616	10583616	C	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	missense	c.955	p.G319S	0.002	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				82	0	0	34	3	8.10811
ANGPT1	0	genome.wustl.edu	37	8	108359229	108359229	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	108359229	108359229	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.394	p.T132A	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				154	0	0	79	34	30.0885
ANGPT1	0	genome.wustl.edu	37	8	108359247	108359247	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	108359247	108359247	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.376	p.T126A	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				159	0	0	82	35	29.9145
ANGPT1	0	genome.wustl.edu	37	8	108509744	108509744	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	108509744	108509744	T	C	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	missense	c.43	p.T15A	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188				59	0	0	26	20	43.4783
NUDCD1	0	genome.wustl.edu	37	8	110255496	110255496	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	110255496	110255496	A	C	SNP	NUDCD1	ENST00000239690	human	ensembl	74_37	-1	known	missense	c.1494	p.F498L	1.000	NULL	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD1	HGNC	ENSG00000120526				204	0	0	138	81	36.9863
PKHD1L1	0	genome.wustl.edu	37	8	110448648	110448648	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	110448648	110448648	T	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.3587	p.I1196S	0.997	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				43	0	0	54	13	19.403
PKHD1L1	0	genome.wustl.edu	37	8	110477432	110477432	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	110477432	110477432	G	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.8371	p.E2791K	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				77	0	0	41	30	42.2535
PKHD1L1	0	genome.wustl.edu	37	8	110534550	110534550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	110534550	110534550	A	G	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.12167	p.D4056G	1.000	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				65	0	0	41	23	35.9375
SYBU	0	genome.wustl.edu	37	8	110590245	110590245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	110590245	110590245	G	A	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.736	p.R246C	0.998	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				214	0	0	133	53	28.4946
CSMD3	0	genome.wustl.edu	37	8	113516067	113516067	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	113516067	113516067	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.5035	p.R1679W	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				67	0	0	80	33	29.2035
CSMD3	0	genome.wustl.edu	37	8	113933929	113933929	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	113933929	113933929	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.1560	p.G520	0.004	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				117	0	0	52	26	33.3333
BLK	0	genome.wustl.edu	37	8	11400775	11400775	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	11400775	11400775	G	A	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	silent	c.42	p.P14	0.559	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573				87	0	0	36	19	34.5455
CSMD3	0	genome.wustl.edu	37	8	114186077	114186077	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	114186077	114186077	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.583	p.D195N	0.576	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				129	0	0	54	46	46
TRPS1	0	genome.wustl.edu	37	8	116631976	116631976	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	116631976	116631976	C	A	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	nonsense	c.349	p.E117*	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				131	0	0	70	35	33.3333
AARD	0	genome.wustl.edu	37	8	117954953	117954953	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	117954953	117954953	G	A	SNP	AARD	ENST00000523536	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AARD	HGNC	ENSG00000205002				59	0	0	43	20	31.746
SLC30A8	0	genome.wustl.edu	37	8	118147548	118147548	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	118147548	118147548	G	A	SNP	SLC30A8	ENST00000521035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC30A8	HGNC	ENSG00000164756				169	0	0	85	33	27.9661
SLC30A8	0	genome.wustl.edu	37	8	118159295	118159295	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	118159295	118159295	G	A	SNP	SLC30A8	ENST00000456015	human	ensembl	74_37	+1	known	silent	c.174	p.K58	0.001	NULL	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A8	HGNC	ENSG00000164756				156	0	0	101	35	25.7353
EXT1	0	genome.wustl.edu	37	8	118834767	118834767	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	118834767	118834767	A	C	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1354	p.L452V	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				101	0	0	72	34	32.0755
EXT1	0	genome.wustl.edu	37	8	118834821	118834821	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	118834821	118834821	T	G	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1300	p.I434L	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				99	0	0	53	36	40.4494
EXT1	0	genome.wustl.edu	37	8	119123272	119123272	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	119123272	119123272	T	G	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.14	p.K5T	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				21	0	0	16	5	23.8095
USP17L2	0	genome.wustl.edu	37	8	11994797	11994797	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	11994797	11994797	C	T	SNP	USP17L2	ENST00000333796	human	ensembl	74_37	-1	known	silent	c.1473	p.S491	0.000	NULL	pfam_Peptidase_C19/C67,pfam_HABP4_PAIRBP1-bd,pfscan_Peptidase_C19/C67	-	no_errors	USP17L2	HGNC	ENSG00000223443				43	0	0	8	16	66.6667
DSCC1	0	genome.wustl.edu	37	8	120865430	120865430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	120865430	120865430	C	T	SNP	DSCC1	ENST00000313655	human	ensembl	74_37	-1	known	missense	c.208	p.E70K	1.000	pfam_Sister_chromatid_cohesion_Dcc1	pfam_Sister_chromatid_cohesion_Dcc1	-	no_errors	DSCC1	HGNC	ENSG00000136982				99	0	0	40	36	47.3684
COL14A1	0	genome.wustl.edu	37	8	121210070	121210070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	121210070	121210070	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.613	p.D205N	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				88	0	0	52	19	26.7606
COL14A1	0	genome.wustl.edu	37	8	121216025	121216025	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	121216025	121216025	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.955	p.E319K	0.997	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				65	0	0	30	19	38.7755
COL14A1	0	genome.wustl.edu	37	8	121296018	121296018	+	Splice_Site	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	121296018	121296018	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	splice_site	c.3967+1	e31+1	1.000	-	-	-	no_errors	COL14A1	HGNC	ENSG00000187955				85	0	0	57	17	22.973
SNTB1	0	genome.wustl.edu	37	8	121823712	121823712	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	121823712	121823712	C	T	SNP	SNTB1	ENST00000395601	human	ensembl	74_37	-1	known	silent	c.372	p.G124	1.000	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164				67	0	0	29	14	32.5581
SNTB1	0	genome.wustl.edu	37	8	121823882	121823882	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	121823882	121823882	A	G	SNP	SNTB1	ENST00000395601	human	ensembl	74_37	-1	known	missense	c.202	p.F68L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,pfam_Pleckstrin_homology,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTB1	HGNC	ENSG00000172164				31	0	0	15	7	31.8182
ZHX2	0	genome.wustl.edu	37	8	123964589	123964589	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	123964589	123964589	C	A	SNP	ZHX2	ENST00000314393	human	ensembl	74_37	+1	known	missense	c.839	p.S280Y	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764				162	0	0	87	46	34.5865
DERL1	0	genome.wustl.edu	37	8	124027820	124027820	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	124027820	124027820	C	T	SNP	DERL1	ENST00000259512	human	ensembl	74_37	-1	known	missense	c.623	p.R208H	1.000	NULL	pfam_DER1	-	no_errors	DERL1	HGNC	ENSG00000136986				115	0	0	71	28	28.2828
TBC1D31	0	genome.wustl.edu	37	8	124096519	124096519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	124096519	124096519	A	G	SNP	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	missense	c.458	p.D153G	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787				206	0	0	102	52	33.7662
FBXO32	0	genome.wustl.edu	37	8	124546990	124546990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	124546990	124546990	C	T	SNP	FBXO32	ENST00000517956	human	ensembl	74_37	-1	known	missense	c.181	p.A61T	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO32	HGNC	ENSG00000156804				124	0	0	63	31	32.9787
FAM91A1	0	genome.wustl.edu	37	8	124811872	124811872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	124811872	124811872	G	A	SNP	FAM91A1	ENST00000334705	human	ensembl	74_37	+1	known	missense	c.1673	p.R558Q	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853				196	0	0	117	63	35
FAM91A1	0	genome.wustl.edu	37	8	124822600	124822600	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	124822600	124822600	A	C	SNP	FAM91A1	ENST00000521166	human	ensembl	74_37	+1	putative	missense	c.2340	p.K780N	0.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853				103	0	0	92	27	22.6891
FER1L6	0	genome.wustl.edu	37	8	125113491	125113491	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	125113491	125113491	C	A	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.5037	p.F1679L	0.990	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				78	0	0	48	18	27.2727
TRMT12	0	genome.wustl.edu	37	8	125464172	125464172	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	125464172	125464172	T	C	SNP	TRMT12	ENST00000328599	human	ensembl	74_37	+1	known	missense	c.1004	p.I335T	1.000	NULL	pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	TRMT12	HGNC	ENSG00000183665				85	0	0	60	26	30.2326
SQLE	0	genome.wustl.edu	37	8	126023790	126023790	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	126023790	126023790	G	T	SNP	SQLE	ENST00000265896	human	ensembl	74_37	+1	known	nonsense	c.1120	p.E374*	1.000	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd	pfam_Squalene_epoxidase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_Rng_hydrolase-like	-	no_errors	SQLE	HGNC	ENSG00000104549				13	0	0	6	4	40
NSMCE2	0	genome.wustl.edu	37	8	126194403	126194403	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	126194403	126194403	T	G	SNP	NSMCE2	ENST00000287437	human	ensembl	74_37	+1	known	missense	c.323	p.F108C	1.000	NULL	pfscan_Znf_MIZ	-	no_errors	NSMCE2	HGNC	ENSG00000156831				113	0	0	89	58	39.4558
DLC1	0	genome.wustl.edu	37	8	12947955	12947955	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	12947955	12947955	G	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.3880	p.R1294C	1.000	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				102	0	0	31	26	45.614
ASAP1	0	genome.wustl.edu	37	8	131073177	131073177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	131073177	131073177	G	A	SNP	ASAP1	ENST00000357668	human	ensembl	74_37	-1	known	missense	c.2840	p.A947V	0.998	NULL	pfam_ArfGAP,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP,prints_p67phox	-	no_errors	ASAP1	HGNC	ENSG00000153317				253	0	0	112	55	32.9341
EFR3A	0	genome.wustl.edu	37	8	132989322	132989322	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	132989322	132989322	C	A	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.1309	p.L437M	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				64	0	0	45	21	31.8182
TG	0	genome.wustl.edu	37	8	133961170	133961170	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	133961170	133961170	G	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.5383	p.D1795Y	1.000	pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				160	0	0	72	35	32.7103
ST3GAL1	0	genome.wustl.edu	37	8	134474127	134474127	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	134474127	134474127	G	T	SNP	ST3GAL1	ENST00000319914	human	ensembl	74_37	-1	known	silent	c.840	p.V280	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL1	HGNC	ENSG00000008513				209	0	0	101	54	34.8387
FAM135B	0	genome.wustl.edu	37	8	139163661	139163661	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	139163661	139163661	G	A	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	silent	c.3057	p.T1019	0.186	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				81	0	0	53	24	31.1688
COL22A1	0	genome.wustl.edu	37	8	139701163	139701163	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	139701163	139701163	C	A	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.2859	p.E953D	0.997	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				142	1	0.699301	71	19	21.1111
PTK2	0	genome.wustl.edu	37	8	141749153	141749153	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	141749153	141749153	G	A	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	nonsense	c.1789	p.R597*	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				80	0	0	44	20	31.25
DENND3	0	genome.wustl.edu	37	8	142154302	142154302	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	142154302	142154302	G	T	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.439	p.D147Y	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				87	0	0	46	33	41.7722
DENND3	0	genome.wustl.edu	37	8	142154308	142154308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	142154308	142154308	G	A	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.445	p.A149T	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				90	0	0	53	23	30.2632
GML	0	genome.wustl.edu	37	8	143921918	143921918	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	143921918	143921918	G	A	SNP	GML	ENST00000220940	human	ensembl	74_37	+1	known	missense	c.65	p.R22H	0.000	NULL	smart_LY6_UPA_recep-like	-	no_errors	GML	HGNC	ENSG00000104499				96	0	0	50	20	28.5714
CYP11B1	0	genome.wustl.edu	37	8	143958486	143958486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	143958486	143958486	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.548	p.S183N	0.999	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				41	0	0	34	9	20.9302
CYP11B1	0	genome.wustl.edu	37	8	143961148	143961148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	143961148	143961148	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.82	p.A28T	0.094	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882				189	0	0	106	34	24.2857
CYP11B2	0	genome.wustl.edu	37	8	143996630	143996630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	143996630	143996630	G	A	SNP	CYP11B2	ENST00000323110	human	ensembl	74_37	-1	known	missense	c.427	p.R143W	0.001	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142				51	0	0	17	13	43.3333
CYP11B2	0	genome.wustl.edu	37	8	143999256	143999256	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	143999256	143999256	T	G	SNP	CYP11B2	ENST00000323110	human	ensembl	74_37	-1	known	missense	c.1	p.M1L	0.039	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142				266	0	0	159	43	21.2871
LY6H	0	genome.wustl.edu	37	8	144240240	144240240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144240240	144240240	C	T	SNP	LY6H	ENST00000342752	human	ensembl	74_37	-1	known	missense	c.230	p.R77Q	0.952	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6H	HGNC	ENSG00000176956				190	0	0	75	36	32.4324
RHPN1	0	genome.wustl.edu	37	8	144461522	144461522	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144461522	144461522	G	A	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	silent	c.789	p.A263	0.024	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				24	0	0	10	11	52.381
MROH6	0	genome.wustl.edu	37	8	144651955	144651955	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144651955	144651955	C	T	SNP	MROH6	ENST00000398882	human	ensembl	74_37	-1	known	missense	c.1214	p.R405Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH6	HGNC	ENSG00000204839				60	0	0	13	7	35
MROH6	0	genome.wustl.edu	37	8	144652503	144652503	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144652503	144652503	C	T	SNP	MROH6	ENST00000398882	human	ensembl	74_37	-1	known	missense	c.953	p.R318H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	MROH6	HGNC	ENSG00000204839				51	0	0	30	2	6.25
PYCRL	0	genome.wustl.edu	37	8	144690248	144690248	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144690248	144690248	T	C	SNP	PYCRL	ENST00000220966	human	ensembl	74_37	-1	known	missense	c.176	p.N59S	1.000	pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCRL	HGNC	ENSG00000104524				78	0	0	39	19	32.7586
EPPK1	0	genome.wustl.edu	37	8	144940819	144940819	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	144940819	144940819	T	C	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.6603	p.E2201	0.000	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				368	0	0	143	84	37.0044
MROH1	0	genome.wustl.edu	37	8	145223230	145223230	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	145223230	145223230	G	A	SNP	MROH1	ENST00000326134	human	ensembl	74_37	+1	known	missense	c.55	p.D19N	0.997	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	MROH1	HGNC	ENSG00000179832				37	0	0	17	8	32
ZNF252P	0	genome.wustl.edu	37	8	146202457	146202457	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	146202457	146202457	A	C	SNP	ZNF252P	ENST00000426361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.702	-	-	-	no_errors	ZNF252P	HGNC	ENSG00000196922				8	0	0	6	6	50
TUSC3	0	genome.wustl.edu	37	8	15588214	15588214	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	15588214	15588214	G	T	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	nonsense	c.838	p.E280*	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				40	0	0	13	10	43.4783
MSR1	0	genome.wustl.edu	37	8	16026226	16026226	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	16026226	16026226	C	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.371	p.R124I	0.798	pfam_Macro_scav_rcpt,prints_Macro_scav_rcpt	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				269	0	0	87	66	43.1373
MSR1	0	genome.wustl.edu	37	8	16026290	16026290	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	16026290	16026290	C	A	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.307	p.D103Y	0.172	NULL	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				206	1	0.483092	75	57	43.1818
VPS37A	0	genome.wustl.edu	37	8	17142068	17142068	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	17142068	17142068	C	A	SNP	VPS37A	ENST00000324849	human	ensembl	74_37	+1	known	missense	c.1056	p.F352L	1.000	pfam_Mod_r	pfam_Mod_r,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	VPS37A	HGNC	ENSG00000155975				125	0	0	43	43	50
MTUS1	0	genome.wustl.edu	37	8	17613066	17613066	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	17613066	17613066	T	G	SNP	MTUS1	ENST00000262102	human	ensembl	74_37	-1	known	missense	c.251	p.K84T	0.026	NULL	superfamily_Ferritin-like_SF	-	no_errors	MTUS1	HGNC	ENSG00000129422				122	0	0	48	47	49.4737
ARHGEF10	0	genome.wustl.edu	37	8	1842726	1842726	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	1842726	1842726	C	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.1503	p.V501	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				71	0	0	21	15	41.6667
PSD3	0	genome.wustl.edu	37	8	18656857	18656857	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	18656857	18656857	A	G	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.2030	p.V677A	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				75	0	0	21	23	52.2727
ARHGEF10	0	genome.wustl.edu	37	8	1904965	1904965	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	1904965	1904965	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	missense	c.3646	p.V1216I	0.016	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				81	0	0	31	21	40.3846
CSGALNACT1	0	genome.wustl.edu	37	8	19315279	19315279	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	19315279	19315279	G	A	SNP	CSGALNACT1	ENST00000518542	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CSGALNACT1	HGNC	ENSG00000147408				26	0	0	11	10	47.619
LPL	0	genome.wustl.edu	37	8	19811702	19811702	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	19811702	19811702	T	G	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	missense	c.613	p.F205V	1.000	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445				172	0	0	44	52	54.1667
LPL	0	genome.wustl.edu	37	8	19813404	19813404	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	19813404	19813404	C	T	SNP	LPL	ENST00000311322	human	ensembl	74_37	+1	known	silent	c.828	p.I276	0.965	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,prints_Lipase,tigrfam_Lipo_Lipase	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipo_Lipase,prints_Lipase,pfscan_PLAT/LH2_dom,tigrfam_Lipo_Lipase	-	no_errors	LPL	HGNC	ENSG00000175445				143	0	0	26	30	53.5714
MYOM2	0	genome.wustl.edu	37	8	2037977	2037977	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	2037977	2037977	G	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.1791	p.S597	0.763	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				87	0	0	21	24	53.3333
XPO7	0	genome.wustl.edu	37	8	21833868	21833868	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	21833868	21833868	C	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	missense	c.626	p.A209V	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				264	0	0	81	66	44.898
XPO7	0	genome.wustl.edu	37	8	21848324	21848324	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	21848324	21848324	C	T	SNP	XPO7	ENST00000434536	human	ensembl	74_37	+1	known	silent	c.1962	p.S654	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	XPO7	HGNC	ENSG00000130227				205	1	0.485437	46	45	49.4505
LGI3	0	genome.wustl.edu	37	8	22006386	22006386	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	22006386	22006386	T	C	SNP	LGI3	ENST00000306317	human	ensembl	74_37	-1	known	missense	c.934	p.T312A	1.000	NULL	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481				71	0	0	12	12	50
PIWIL2	0	genome.wustl.edu	37	8	22172631	22172631	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	22172631	22172631	T	C	SNP	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	silent	c.2181	p.G727	0.999	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181				120	1	0.826446	25	31	55.3571
ADAMDEC1	0	genome.wustl.edu	37	8	24254940	24254940	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	24254940	24254940	C	T	SNP	ADAMDEC1	ENST00000256412	human	ensembl	74_37	+1	known	nonsense	c.598	p.R200*	0.419	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAMDEC1	HGNC	ENSG00000134028				207	0	0	70	81	53.6424
DOCK5	0	genome.wustl.edu	37	8	25227129	25227129	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	25227129	25227129	G	A	SNP	DOCK5	ENST00000276440	human	ensembl	74_37	+1	known	missense	c.3496	p.E1166K	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK5	HGNC	ENSG00000147459				35	0	0	5	8	61.5385
KCTD9	0	genome.wustl.edu	37	8	25296817	25296817	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	25296817	25296817	T	C	SNP	KCTD9	ENST00000221200	human	ensembl	74_37	-1	known	silent	c.477	p.V159	0.991	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_5peptide_repeat,pfam_T1-type_BTB,pfam_K_channel_plant,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD9	HGNC	ENSG00000104756				46	0	0	14	12	46.1538
SDAD1P1	0	genome.wustl.edu	37	8	26238429	26238429	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	26238429	26238429	C	A	SNP	SDAD1P1	ENST00000519902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDAD1P1	HGNC	ENSG00000228451				99	0	0	42	33	44
PTK2B	0	genome.wustl.edu	37	8	27300491	27300491	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	27300491	27300491	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	silent	c.2139	p.P713	0.993	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				117	0	0	17	30	63.8298
CSMD1	0	genome.wustl.edu	37	8	2824263	2824263	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	2824263	2824263	A	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.8932	p.S2978P	1.000	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				30	0	0	8	9	52.9412
TEX15	0	genome.wustl.edu	37	8	30699651	30699651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	30699651	30699651	G	A	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.6883	p.P2295S	0.001	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				91	0	0	17	23	57.5
TEX15	0	genome.wustl.edu	37	8	30701056	30701056	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	30701056	30701056	T	G	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.5478	p.E1826D	0.994	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				81	0	0	39	26	40
TEX15	0	genome.wustl.edu	37	8	30703661	30703661	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	30703661	30703661	G	T	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	nonsense	c.2873	p.S958*	0.889	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				136	1	0.729927	56	49	46.6667
CSMD1	0	genome.wustl.edu	37	8	3205548	3205548	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	3205548	3205548	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3443	p.R1148Q	0.001	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				23	0	0	5	8	61.5385
RAB11FIP1	0	genome.wustl.edu	37	8	37734802	37734802	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	37734802	37734802	C	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	missense	c.639	p.K213N	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				293	0	0	73	67	47.8571
DDHD2	0	genome.wustl.edu	37	8	38090720	38090720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	38090720	38090720	G	A	SNP	DDHD2	ENST00000397166	human	ensembl	74_37	+1	known	missense	c.208	p.A70T	0.996	pfam_WWE-dom,pfscan_WWE-dom	pfam_DDHD,pfam_WWE-dom,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD,pfscan_WWE-dom	-	no_errors	DDHD2	HGNC	ENSG00000085788				130	0	0	27	33	55
KAT6A	0	genome.wustl.edu	37	8	41789996	41789996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	41789996	41789996	C	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.5742	p.M1914I	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				163	0	0	82	32	28.0702
KAT6A	0	genome.wustl.edu	37	8	41794925	41794925	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	41794925	41794925	G	A	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	silent	c.3201	p.I1067	0.993	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				150	0	0	79	37	31.8966
KAT6A	0	genome.wustl.edu	37	8	41832248	41832248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	41832248	41832248	G	A	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.1456	p.R486C	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				123	0	0	72	36	33.3333
AP3M2	0	genome.wustl.edu	37	8	42023053	42023053	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42023053	42023053	C	T	SNP	AP3M2	ENST00000174653	human	ensembl	74_37	+1	known	silent	c.778	p.L260	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,pfscan_Clathrin_mu_C,prints_Clathrin_mu	-	no_errors	AP3M2	HGNC	ENSG00000070718				237	1	0.420168	130	65	33.3333
IKBKB	0	genome.wustl.edu	37	8	42129664	42129664	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42129664	42129664	G	A	SNP	IKBKB	ENST00000520810	human	ensembl	74_37	+1	known	missense	c.46	p.E16K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IKKbetaNEMObind,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365				175	0	0	99	38	27.7372
CHRNB3	0	genome.wustl.edu	37	8	42587006	42587006	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42587006	42587006	A	C	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.556	p.I186L	0.045	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				97	0	0	72	16	18.1818
CHRNA6	0	genome.wustl.edu	37	8	42612120	42612120	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42612120	42612120	G	A	SNP	CHRNA6	ENST00000276410	human	ensembl	74_37	-1	known	missense	c.325	p.R109C	0.996	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434				162	0	0	85	50	37.037
CHRNA6	0	genome.wustl.edu	37	8	42620276	42620276	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42620276	42620276	G	A	SNP	CHRNA6	ENST00000276410	human	ensembl	74_37	-1	known	missense	c.151	p.P51S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434				199	0	0	104	58	35.8025
HOOK3	0	genome.wustl.edu	37	8	42761366	42761366	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42761366	42761366	G	A	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	silent	c.108	p.T36	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				101	0	0	60	30	33.3333
HOOK3	0	genome.wustl.edu	37	8	42828481	42828481	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42828481	42828481	A	C	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.1172	p.K391T	1.000	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				45	0	0	49	27	35.5263
HOOK3	0	genome.wustl.edu	37	8	42865454	42865454	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	42865454	42865454	A	C	SNP	HOOK3	ENST00000307602	human	ensembl	74_37	+1	known	missense	c.1745	p.K582T	1.000	pfam_Hook-related_fam,superfamily_t-SNARE	pfam_Hook-related_fam,superfamily_t-SNARE	-	no_errors	HOOK3	HGNC	ENSG00000168172				18	0	0	21	7	25
POTEA	0	genome.wustl.edu	37	8	43197428	43197428	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	43197428	43197428	G	T	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				95	0	0	54	25	31.6456
SPIDR	0	genome.wustl.edu	37	8	48352951	48352951	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	48352951	48352951	C	T	SNP	SPIDR	ENST00000297423	human	ensembl	74_37	+1	known	missense	c.944	p.A315V	0.993	NULL	NULL	-	no_errors	SPIDR	HGNC	ENSG00000164808				94	0	0	69	30	30.303
PRKDC	0	genome.wustl.edu	37	8	48769854	48769854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	48769854	48769854	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.6469	p.R2157C	1.000	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				59	0	0	33	16	32.6531
PRKDC	0	genome.wustl.edu	37	8	48794568	48794568	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	48794568	48794568	G	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.4864	p.L1622M	0.988	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				126	1	0.787402	73	29	28.4314
PRKDC	0	genome.wustl.edu	37	8	48815210	48815210	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	48815210	48815210	A	C	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.3188	p.L1063R	1.000	superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				51	0	0	26	9	25.7143
MCM4	0	genome.wustl.edu	37	8	48885587	48885587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	48885587	48885587	C	T	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	missense	c.2099	p.P700L	1.000	pfam_MCM_DNA-dep_ATPase,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				51	0	0	19	11	36.6667
EFCAB1	0	genome.wustl.edu	37	8	49642308	49642308	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	49642308	49642308	C	A	SNP	EFCAB1	ENST00000262103	human	ensembl	74_37	-1	known	missense	c.442	p.D148Y	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	EFCAB1	HGNC	ENSG00000034239				41	0	0	41	19	31.6667
SNAI2	0	genome.wustl.edu	37	8	49832466	49832466	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	49832466	49832466	C	A	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	missense	c.614	p.R205I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				125	0	0	77	41	34.7458
PXDNL	0	genome.wustl.edu	37	8	52252189	52252189	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	52252189	52252189	C	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	nonsense	c.4141	p.E1381*	0.001	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				100	0	0	68	31	31.3131
ST18	0	genome.wustl.edu	37	8	53055523	53055523	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	53055523	53055523	A	C	SNP	ST18	ENST00000276480	human	ensembl	74_37	-1	known	missense	c.2135	p.L712R	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488				113	0	0	96	8	7.69231
FAM150A	0	genome.wustl.edu	37	8	53454968	53454968	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	53454968	53454968	G	T	SNP	FAM150A	ENST00000358543	human	ensembl	74_37	-1	known	missense	c.228	p.F76L	1.000	NULL	NULL	-	no_errors	FAM150A	HGNC	ENSG00000196711				34	0	0	46	17	26.9841
RB1CC1	0	genome.wustl.edu	37	8	53596199	53596199	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	53596199	53596199	C	T	SNP	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	silent	c.279	p.S93	1.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				58	0	0	34	31	47.6923
TCEA1	0	genome.wustl.edu	37	8	54899528	54899528	+	Splice_Site	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	54899528	54899528	T	C	SNP	TCEA1	ENST00000521604	human	ensembl	74_37	-1	known	splice_site	c.523+1	e6+1	1.000	-	-	-	no_errors	TCEA1	HGNC	ENSG00000187735				14	0	0	8	5	38.4615
LYPLA1	0	genome.wustl.edu	37	8	54960520	54960520	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	54960520	54960520	T	G	SNP	LYPLA1	ENST00000519272	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	LYPLA1	HGNC	ENSG00000120992				24	0	0	25	9	26.4706
RP1	0	genome.wustl.edu	37	8	55539553	55539553	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	55539553	55539553	A	C	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.3111	p.K1037N	0.005	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				206	0	0	132	70	34.6535
RP1	0	genome.wustl.edu	37	8	55540960	55540960	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	55540960	55540960	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	silent	c.4518	p.L1506	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				53	0	0	76	8	9.52381
RP1	0	genome.wustl.edu	37	8	55542456	55542456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	55542456	55542456	G	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.6014	p.R2005K	0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				68	0	0	44	26	37.1429
XKR4	0	genome.wustl.edu	37	8	56270279	56270279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	56270279	56270279	G	A	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	missense	c.848	p.S283N	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				133	0	0	62	17	21.519
RPS20	0	genome.wustl.edu	37	8	56985618	56985618	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	56985618	56985618	A	C	SNP	RPS20	ENST00000520490	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPS20	HGNC	ENSG00000008988				75	0	0	32	22	40.7407
CYP7A1	0	genome.wustl.edu	37	8	59409434	59409434	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	59409434	59409434	C	T	SNP	CYP7A1	ENST00000301645	human	ensembl	74_37	-1	known	missense	c.637	p.D213N	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP7A1	HGNC	ENSG00000167910				166	0	0	74	39	34.5133
SDCBP	0	genome.wustl.edu	37	8	59488523	59488523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	59488523	59488523	G	A	SNP	SDCBP	ENST00000260130	human	ensembl	74_37	+1	known	missense	c.305	p.G102E	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC	ENSG00000137575				157	0	0	96	50	34.2466
CA8	0	genome.wustl.edu	37	8	61121466	61121466	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	61121466	61121466	G	A	SNP	CA8	ENST00000317995	human	ensembl	74_37	-1	known	nonsense	c.751	p.R251*	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA8	HGNC	ENSG00000178538				68	0	0	47	19	28.7879
CHD7	0	genome.wustl.edu	37	8	61693639	61693639	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	61693639	61693639	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.1746	p.K582	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				16	0	0	11	5	31.25
ASPH	0	genome.wustl.edu	37	8	62563669	62563669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	62563669	62563669	C	T	SNP	ASPH	ENST00000379454	human	ensembl	74_37	-1	known	missense	c.430	p.E144K	0.953	pfam_Asp-B-hydro/Triadin_dom	pfam_Asp-B-hydro/Triadin_dom,pfam_Asp_Arg_b-Hydrxlase,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ASPH	HGNC	ENSG00000198363				61	0	0	46	27	36.9863
ARMC1	0	genome.wustl.edu	37	8	66539626	66539626	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	66539626	66539626	G	T	SNP	ARMC1	ENST00000276569	human	ensembl	74_37	-1	known	missense	c.8	p.S3Y	0.999	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_HeavyMe-assoc_HMA,pirsf_UCP013899_metal-bd	-	no_errors	ARMC1	HGNC	ENSG00000104442				145	0	0	66	34	34
TRIM55	0	genome.wustl.edu	37	8	67047359	67047359	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	67047359	67047359	C	T	SNP	TRIM55	ENST00000315962	human	ensembl	74_37	+1	known	missense	c.476	p.A159V	1.000	smart_Znf_B-box,pfscan_Znf_B-box	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM55	HGNC	ENSG00000147573				155	0	0	83	40	32.5203
RRS1	0	genome.wustl.edu	37	8	67341435	67341435	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	67341435	67341435	C	T	SNP	RRS1	ENST00000320270	human	ensembl	74_37	+1	known	silent	c.69	p.R23	1.000	NULL	pfam_Ribosom_reg	-	no_errors	RRS1	HGNC	ENSG00000179041				40	0	0	20	5	20
VCPIP1	0	genome.wustl.edu	37	8	67578876	67578876	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	67578876	67578876	A	G	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	silent	c.318	p.V106	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				96	0	0	55	5	8.33333
C8orf44	0	genome.wustl.edu	37	8	67591956	67591956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	67591956	67591956	G	A	SNP	C8orf44	ENST00000390159	human	ensembl	74_37	+1	known	missense	c.247	p.V83I	0.000	NULL	NULL	-	no_errors	C8orf44	HGNC	ENSG00000213865				72	0	0	38	20	34.4828
COPS5	0	genome.wustl.edu	37	8	67974198	67974198	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	67974198	67974198	T	C	SNP	COPS5	ENST00000357849	human	ensembl	74_37	-1	known	missense	c.34	p.T12A	1.000	NULL	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS5	HGNC	ENSG00000121022				116	0	0	61	34	35.7895
CSPP1	0	genome.wustl.edu	37	8	68007713	68007713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	68007713	68007713	A	C	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.696	p.E232D	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				89	0	0	51	40	43.956
CSPP1	0	genome.wustl.edu	37	8	68030586	68030586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	68030586	68030586	G	A	SNP	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	missense	c.1585	p.D529N	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				180	0	0	99	50	33.557
ARFGEF1	0	genome.wustl.edu	37	8	68130137	68130137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	68130137	68130137	C	T	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.4493	p.R1498Q	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				96	0	0	58	32	35.5556
ARFGEF1	0	genome.wustl.edu	37	8	68208748	68208748	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	68208748	68208748	T	G	SNP	ARFGEF1	ENST00000262215	human	ensembl	74_37	-1	known	missense	c.557	p.K186T	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF1	HGNC	ENSG00000066777				98	0	0	50	34	40.4762
PREX2	0	genome.wustl.edu	37	8	68992692	68992692	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	68992692	68992692	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1657	p.E553K	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				56	0	0	50	26	34.2105
PREX2	0	genome.wustl.edu	37	8	69136820	69136820	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	69136820	69136820	G	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.4734	p.K1578N	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				63	0	0	50	22	30.5556
C8orf34	0	genome.wustl.edu	37	8	69633596	69633596	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	69633596	69633596	A	G	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	missense	c.1328	p.D443G	0.992	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				43	0	0	29	15	34.0909
SLCO5A1	0	genome.wustl.edu	37	8	70585235	70585235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	70585235	70585235	C	T	SNP	SLCO5A1	ENST00000260126	human	ensembl	74_37	-1	known	missense	c.2416	p.E806K	1.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571				118	0	0	60	31	34.0659
NCOA2	0	genome.wustl.edu	37	8	71033568	71033568	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71033568	71033568	T	C	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.4352	p.D1451G	0.999	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				28	0	0	16	6	27.2727
NCOA2	0	genome.wustl.edu	37	8	71068536	71068536	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71068536	71068536	T	G	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.2064	p.K688N	0.996	pfam_SRC-1,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				133	0	0	85	7	7.6087
NCOA2	0	genome.wustl.edu	37	8	71075749	71075749	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71075749	71075749	T	G	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.783	p.R261S	0.956	pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				68	0	0	36	17	32.0755
NCOA2	0	genome.wustl.edu	37	8	71082507	71082507	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71082507	71082507	T	G	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.471	p.K157N	1.000	pfam_PAS_fold,superfamily_PAS,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				30	0	0	20	4	16.6667
NCOA2	0	genome.wustl.edu	37	8	71126174	71126174	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71126174	71126174	C	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	nonsense	c.223	p.E75*	1.000	superfamily_bHLH_dom,smart_bHLH_dom,pirsf_Nuclear_rcpt_coactivator,pfscan_bHLH_dom	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				19	0	0	9	3	25
TRAM1	0	genome.wustl.edu	37	8	71495976	71495976	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71495976	71495976	G	T	SNP	TRAM1	ENST00000262213	human	ensembl	74_37	-1	known	missense	c.799	p.L267I	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1	HGNC	ENSG00000067167				141	1	0.704225	87	54	38.2979
LACTB2	0	genome.wustl.edu	37	8	71553193	71553193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	71553193	71553193	G	A	SNP	LACTB2	ENST00000276590	human	ensembl	74_37	-1	known	missense	c.685	p.R229C	0.173	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	LACTB2	HGNC	ENSG00000147592				33	0	0	28	19	40.4255
EYA1	0	genome.wustl.edu	37	8	72246342	72246342	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	72246342	72246342	G	T	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.192	p.F64L	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				82	0	0	51	28	35.443
MSC	0	genome.wustl.edu	37	8	72756409	72756409	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	72756409	72756409	G	A	SNP	MSC	ENST00000325509	human	ensembl	74_37	-1	known	missense	c.5	p.S2F	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSC	HGNC	ENSG00000178860				69	0	0	33	21	38.8889
TRPA1	0	genome.wustl.edu	37	8	72973946	72973946	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	72973946	72973946	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.858	p.E286D	0.998	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				94	0	0	71	25	26.0417
TRPA1	0	genome.wustl.edu	37	8	72983961	72983961	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	72983961	72983961	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.253	p.D85Y	0.328	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				55	0	0	42	19	31.1475
LY96	0	genome.wustl.edu	37	8	74922307	74922307	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	74922307	74922307	G	T	SNP	LY96	ENST00000284818	human	ensembl	74_37	+1	known	nonsense	c.274	p.E92*	0.972	pfam_ML_dom,superfamily_Ig_E-set,smart_ML_dom	pfam_ML_dom,superfamily_Ig_E-set,smart_ML_dom	-	no_errors	LY96	HGNC	ENSG00000154589				92	0	0	63	30	32.2581
JPH1	0	genome.wustl.edu	37	8	75233263	75233263	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	75233263	75233263	G	T	SNP	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	nonsense	c.260	p.S87*	1.000	pfam_MORN,pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369				46	0	0	46	17	26.9841
ZFHX4	0	genome.wustl.edu	37	8	77617005	77617005	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77617005	77617005	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.682	p.R228C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				45	0	0	42	15	26.3158
ZFHX4	0	genome.wustl.edu	37	8	77617895	77617895	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77617895	77617895	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.1572	p.S524	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				48	0	0	32	13	28.8889
ZFHX4	0	genome.wustl.edu	37	8	77763421	77763421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77763421	77763421	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.4264	p.R1422W	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				51	0	0	25	13	34.2105
ZFHX4	0	genome.wustl.edu	37	8	77764977	77764977	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77764977	77764977	C	T	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	silent	c.5820	p.G1940	0.003	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				60	0	0	48	19	28.3582
ZFHX4	0	genome.wustl.edu	37	8	77766413	77766413	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77766413	77766413	C	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.7256	p.S2419Y	0.002	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				19	0	0	18	9	33.3333
ZNF705B	0	genome.wustl.edu	37	8	7807605	7807605	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	7807605	7807605	G	T	SNP	ZNF705B	ENST00000400120	human	ensembl	74_37	+1	known	nonsense	c.190	p.E64*	0.399	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705B	HGNC	ENSG00000215356				80	0	0	73	10	12.0482
ZC2HC1A	0	genome.wustl.edu	37	8	79629691	79629691	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	79629691	79629691	T	C	SNP	ZC2HC1A	ENST00000263849	human	ensembl	74_37	+1	known	missense	c.941	p.F314S	1.000	NULL	NULL	-	no_errors	ZC2HC1A	HGNC	ENSG00000104427				168	0	0	125	45	26.4706
STMN2	0	genome.wustl.edu	37	8	80567157	80567157	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	80567157	80567157	C	T	SNP	STMN2	ENST00000220876	human	ensembl	74_37	+1	known	nonsense	c.340	p.R114*	1.000	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	pfam_Stathmin_fam,superfamily_Stathmin_fam,pirsf_Stathmin_fam,prints_Stathmin_fam	-	no_errors	STMN2	HGNC	ENSG00000104435				58	0	0	23	18	43.9024
PAG1	0	genome.wustl.edu	37	8	81888912	81888912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	81888912	81888912	G	A	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	missense	c.1166	p.A389V	0.997	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				98	0	0	49	23	31.9444
SGK223	0	genome.wustl.edu	37	8	8235348	8235348	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	8235348	8235348	C	A	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	nonsense	c.571	p.E191*	0.025	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				165	0	0	39	32	45.0704
FABP4	0	genome.wustl.edu	37	8	82390939	82390939	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	82390939	82390939	A	C	SNP	FABP4	ENST00000518669	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FABP4	HGNC	ENSG00000170323				11	0	0	7	5	41.6667
ZFAND1	0	genome.wustl.edu	37	8	82615252	82615252	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	82615252	82615252	G	A	SNP	ZFAND1	ENST00000220669	human	ensembl	74_37	-1	known	silent	c.588	p.A196	0.422	NULL	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	-	no_errors	ZFAND1	HGNC	ENSG00000104231				30	0	0	16	7	30.4348
SNX16	0	genome.wustl.edu	37	8	82752105	82752105	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	82752105	82752105	A	C	SNP	SNX16	ENST00000345957	human	ensembl	74_37	-1	known	silent	c.117	p.S39	1.000	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX16	HGNC	ENSG00000104497				169	0	0	100	48	32.4324
LRRCC1	0	genome.wustl.edu	37	8	86037034	86037034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	86037034	86037034	C	T	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	missense	c.1132	p.R378C	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				88	0	0	76	28	26.9231
WWP1	0	genome.wustl.edu	37	8	87393047	87393047	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87393047	87393047	A	C	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	missense	c.163	p.K55Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	WWP1	HGNC	ENSG00000123124				56	0	0	40	22	35.4839
WWP1	0	genome.wustl.edu	37	8	87410844	87410844	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87410844	87410844	G	A	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	silent	c.516	p.E172	0.920	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	WWP1	HGNC	ENSG00000123124				96	0	0	70	31	30.6931
WWP1	0	genome.wustl.edu	37	8	87424021	87424021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87424021	87424021	G	A	SNP	WWP1	ENST00000265428	human	ensembl	74_37	+1	known	missense	c.979	p.A327T	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	WWP1	HGNC	ENSG00000123124				70	0	0	65	21	24.4186
CNGB3	0	genome.wustl.edu	37	8	87641195	87641195	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87641195	87641195	G	A	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	nonsense	c.1432	p.R478*	1.000	superfamily_cNMP-bd-like	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				278	0	0	132	66	33.3333
CNGB3	0	genome.wustl.edu	37	8	87656903	87656903	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87656903	87656903	A	C	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.1002	p.F334L	1.000	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				45	0	0	48	15	23.8095
CNGB3	0	genome.wustl.edu	37	8	87679359	87679359	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	87679359	87679359	G	A	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	nonsense	c.646	p.R216*	0.986	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				44	0	0	33	11	25
PPP1R3B	0	genome.wustl.edu	37	8	8998978	8998978	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	8998978	8998978	G	A	SNP	PPP1R3B	ENST00000310455	human	ensembl	74_37	-1	known	missense	c.184	p.R62W	1.000	pirsf_Pase-1_Glycogen_target-su_met	pfam_CBM_21,pirsf_Pase-1_Glycogen_target-su_met,pfscan_CBM_21	-	no_errors	PPP1R3B	HGNC	ENSG00000173281				135	1	0.735294	40	40	50
OSGIN2	0	genome.wustl.edu	37	8	90937584	90937584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	90937584	90937584	A	G	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	missense	c.1474	p.T492A	1.000	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				191	0	0	101	61	37.6543
CALB1	0	genome.wustl.edu	37	8	91072475	91072475	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	91072475	91072475	T	C	SNP	CALB1	ENST00000265431	human	ensembl	74_37	-1	known	missense	c.712	p.I238V	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALB1	HGNC	ENSG00000104327				177	0	0	121	73	37.6289
KIAA1429	0	genome.wustl.edu	37	8	95523529	95523529	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	95523529	95523529	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.3274	p.S1092P	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				53	0	0	23	17	42.5
TNKS	0	genome.wustl.edu	37	8	9562212	9562212	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	9562212	9562212	C	T	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	nonsense	c.1147	p.R383*	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				111	0	0	38	21	35.5932
DPY19L4	0	genome.wustl.edu	37	8	95800258	95800258	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	95800258	95800258	T	G	SNP	DPY19L4	ENST00000414645	human	ensembl	74_37	+1	known	nonsense	c.1985	p.L662*	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L4	HGNC	ENSG00000156162				101	0	0	80	30	27.2727
GDF6	0	genome.wustl.edu	37	8	97172790	97172790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	97172790	97172790	C	T	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	missense	c.131	p.R44Q	0.999	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				123	0	0	78	37	32.1739
PTDSS1	0	genome.wustl.edu	37	8	97299345	97299345	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	97299345	97299345	C	T	SNP	PTDSS1	ENST00000517309	human	ensembl	74_37	+1	known	nonsense	c.412	p.R138*	1.000	pfam_PSS	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471				261	0	0	127	72	36.1809
PTDSS1	0	genome.wustl.edu	37	8	97345750	97345750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	97345750	97345750	C	T	SNP	PTDSS1	ENST00000517309	human	ensembl	74_37	+1	known	missense	c.1378	p.R460W	1.000	NULL	pfam_PSS	-	no_errors	PTDSS1	HGNC	ENSG00000156471				207	0	0	118	49	29.3413
POP1	0	genome.wustl.edu	37	8	99139972	99139972	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	99139972	99139972	A	C	SNP	POP1	ENST00000349693	human	ensembl	74_37	+1	known	missense	c.292	p.I98L	0.998	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356				122	0	0	53	30	36.1446
NIPAL2	0	genome.wustl.edu	37	8	99248398	99248398	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	99248398	99248398	C	T	SNP	NIPAL2	ENST00000341166	human	ensembl	74_37	-1	known	missense	c.421	p.A141T	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPAL2	HGNC	ENSG00000104361				54	0	0	50	17	25.3731
CCDC180	0	genome.wustl.edu	37	9	100056271	100056271	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100056271	100056271	C	T	SNP	CCDC180	ENST00000357054	human	ensembl	74_37	+1	known	silent	c.129	p.N43	0.281	NULL	NULL	-	no_errors	CCDC180	HGNC	ENSG00000197816				198	0	0	101	59	36.875
TDRD7	0	genome.wustl.edu	37	9	100257990	100257990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100257990	100257990	G	A	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.3122	p.R1041Q	1.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				224	0	0	124	45	26.6272
TSTD2	0	genome.wustl.edu	37	9	100380144	100380144	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100380144	100380144	T	G	SNP	TSTD2	ENST00000341170	human	ensembl	74_37	-1	known	missense	c.498	p.E166D	0.031	NULL	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925				81	0	0	45	26	36.6197
XPA	0	genome.wustl.edu	37	9	100444706	100444706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100444706	100444706	A	G	SNP	XPA	ENST00000462523	human	ensembl	74_37	-1	known	missense	c.680	p.V227A	0.000	tigrfam_XPA	pfam_XPA_C,pfam_Znf_XPA_CS,superfamily_DNA-bd_dom_put,tigrfam_XPA	-	no_errors	XPA	HGNC	ENSG00000136936				147	0	0	121	37	23.4177
XPA	0	genome.wustl.edu	37	9	100449522	100449522	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100449522	100449522	C	T	SNP	XPA	ENST00000375128	human	ensembl	74_37	-1	known	silent	c.411	p.K137	1.000	pfam_XPA_C,superfamily_DNA-bd_dom_put,tigrfam_XPA	pfam_XPA_C,pfam_Znf_XPA_CS,superfamily_DNA-bd_dom_put,tigrfam_XPA	-	no_errors	XPA	HGNC	ENSG00000136936				42	0	0	45	18	28.5714
HEMGN	0	genome.wustl.edu	37	9	100692644	100692644	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100692644	100692644	C	A	SNP	HEMGN	ENST00000259456	human	ensembl	74_37	-1	known	nonsense	c.1033	p.E345*	1.000	NULL	NULL	-	no_errors	HEMGN	HGNC	ENSG00000136929				233	0	0	137	77	35.9813
HEMGN	0	genome.wustl.edu	37	9	100692828	100692828	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100692828	100692828	T	G	SNP	HEMGN	ENST00000259456	human	ensembl	74_37	-1	known	missense	c.849	p.E283D	0.003	NULL	NULL	-	no_errors	HEMGN	HGNC	ENSG00000136929				214	0	0	165	33	16.6667
NANS	0	genome.wustl.edu	37	9	100845151	100845151	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	100845151	100845151	A	C	SNP	NANS	ENST00000210444	human	ensembl	74_37	+1	known	missense	c.894	p.K298N	0.996	pfam_SAF,superfamily_AFP_Neu5c_C,smart_SAF,pfscan_AFP_Neu5c_C,prints_Antifreeze_III	pfam_Neu5Ac_N,pfam_SAF,superfamily_AFP_Neu5c_C,smart_SAF,pfscan_AFP_Neu5c_C,prints_Antifreeze_III	-	no_errors	NANS	HGNC	ENSG00000095380				58	0	0	23	11	32.3529
GABBR2	0	genome.wustl.edu	37	9	101304324	101304324	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	101304324	101304324	A	C	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	missense	c.461	p.L154R	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928				56	0	0	25	18	41.8605
COL15A1	0	genome.wustl.edu	37	9	101767207	101767207	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	101767207	101767207	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.1228	p.A410T	0.000	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				195	1	0.510204	77	49	38.8889
COL15A1	0	genome.wustl.edu	37	9	101801001	101801001	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	101801001	101801001	C	T	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	silent	c.2461	p.L821	0.996	NULL	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				193	0	0	108	38	26.0274
INVS	0	genome.wustl.edu	37	9	102988353	102988353	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	102988353	102988353	C	T	SNP	INVS	ENST00000262457	human	ensembl	74_37	+1	known	missense	c.283	p.R95C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_IQ_motif_EF-hand-BS,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Ankyrin_rpt	-	no_errors	INVS	HGNC	ENSG00000119509				21	0	0	17	11	39.2857
ZNF189	0	genome.wustl.edu	37	9	104170264	104170264	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	104170264	104170264	G	T	SNP	ZNF189	ENST00000339664	human	ensembl	74_37	+1	known	nonsense	c.214	p.E72*	1.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF189	HGNC	ENSG00000136870				46	0	0	23	13	36.1111
RNF20	0	genome.wustl.edu	37	9	104317003	104317003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	104317003	104317003	G	A	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.2047	p.D683N	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				50	0	0	29	17	36.9565
DMRT2	0	genome.wustl.edu	37	9	1053757	1053757	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	1053757	1053757	C	T	SNP	DMRT2	ENST00000302441	human	ensembl	74_37	+1	known	silent	c.561	p.F187	0.491	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT2	HGNC	ENSG00000173253				105	0	0	60	32	34.7826
CYLC2	0	genome.wustl.edu	37	9	105767051	105767051	+	Silent	SNP	T	T	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	105767051	105767051	T	A	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	silent	c.255	p.S85	0.111	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				57	0	0	33	30	47.619
CYLC2	0	genome.wustl.edu	37	9	105767610	105767610	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	105767610	105767610	G	T	SNP	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	nonsense	c.697	p.E233*	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833				71	0	0	49	17	25.7576
OR13C4	0	genome.wustl.edu	37	9	107288807	107288807	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	107288807	107288807	C	T	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	silent	c.684	p.T228	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				172	0	0	104	40	27.7778
OR13C5	0	genome.wustl.edu	37	9	107361671	107361671	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	107361671	107361671	A	G	SNP	OR13C5	ENST00000374779	human	ensembl	74_37	-1	known	silent	c.24	p.I8	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C5	HGNC	ENSG00000255800				104	0	0	92	37	28.6822
ABCA1	0	genome.wustl.edu	37	9	107582240	107582240	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	107582240	107582240	C	T	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.3071	p.S1024N	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				155	0	0	79	40	33.6134
TMEM38B	0	genome.wustl.edu	37	9	108536166	108536166	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	108536166	108536166	G	T	SNP	TMEM38B	ENST00000374692	human	ensembl	74_37	+1	known	missense	c.681	p.Q227H	0.066	pfam_TRIC_channel	pfam_TRIC_channel	-	no_errors	TMEM38B	HGNC	ENSG00000095209				146	0	0	85	28	24.7788
ZNF462	0	genome.wustl.edu	37	9	109691051	109691051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	109691051	109691051	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	missense	c.4858	p.E1620K	0.998	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				156	0	0	94	40	29.8507
ENSG00000226047	0	genome.wustl.edu	37	9	109879758	109879758	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	109879758	109879758	T	G	SNP	ENSG00000226047	ENST00000427833	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-196I18.4	Clone_based_vega_gene	ENSG00000226047				229	0	0	134	66	33
ACTL7A	0	genome.wustl.edu	37	9	111624759	111624759	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	111624759	111624759	G	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	nonsense	c.157	p.E53*	0.032	NULL	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				94	0	0	51	25	32.8947
IKBKAP	0	genome.wustl.edu	37	9	111689701	111689701	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	111689701	111689701	G	T	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	silent	c.336	p.I112	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061				130	0	0	65	39	37.5
CTNNAL1	0	genome.wustl.edu	37	9	111761501	111761501	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	111761501	111761501	T	G	SNP	CTNNAL1	ENST00000325551	human	ensembl	74_37	-1	known	missense	c.177	p.K59N	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	-	no_errors	CTNNAL1	HGNC	ENSG00000119326				171	0	0	124	66	34.7368
EPB41L4B	0	genome.wustl.edu	37	9	112018421	112018421	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	112018421	112018421	G	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	missense	c.924	p.F308L	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				123	0	0	79	34	30.0885
SVEP1	0	genome.wustl.edu	37	9	113170530	113170530	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	113170530	113170530	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.7350	p.I2450	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				55	0	0	34	8	19.0476
SVEP1	0	genome.wustl.edu	37	9	113198718	113198718	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	113198718	113198718	G	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.4706	p.S1569Y	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				89	0	0	54	20	27.027
SVEP1	0	genome.wustl.edu	37	9	113208196	113208196	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	113208196	113208196	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.4384	p.D1462N	0.067	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				131	0	0	67	41	37.963
SVEP1	0	genome.wustl.edu	37	9	113221386	113221386	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	113221386	113221386	A	G	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.3330	p.C1110	1.000	superfamily_Growth_fac_rcpt_N_dom	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				140	0	0	90	40	30.7692
LPAR1	0	genome.wustl.edu	37	9	113704061	113704061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	113704061	113704061	C	T	SNP	LPAR1	ENST00000538760	human	ensembl	74_37	-1	known	missense	c.436	p.E146K	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_LPA_rcpt_EDG2,prints_LPA_rcpt,prints_GPCR_Rhodpsn	-	no_errors	LPAR1	HGNC	ENSG00000198121				170	0	0	93	55	37.1622
ZNF483	0	genome.wustl.edu	37	9	114304143	114304143	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	114304143	114304143	A	G	SNP	ZNF483	ENST00000309235	human	ensembl	74_37	+1	known	missense	c.928	p.N310D	0.001	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF483	HGNC	ENSG00000173258				187	0	0	162	92	36.2205
DNAJC25	0	genome.wustl.edu	37	9	114412194	114412194	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	114412194	114412194	G	T	SNP	DNAJC25	ENST00000313525	human	ensembl	74_37	+1	known	missense	c.951	p.E317D	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC25	HGNC	ENSG00000059769				36	0	0	26	17	39.5349
C9orf84	0	genome.wustl.edu	37	9	114462248	114462248	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	114462248	114462248	C	A	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	nonsense	c.2977	p.E993*	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				111	0	0	79	42	34.7107
UGCG	0	genome.wustl.edu	37	9	114687128	114687128	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	114687128	114687128	C	A	SNP	UGCG	ENST00000374279	human	ensembl	74_37	+1	known	missense	c.415	p.L139I	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	UGCG	HGNC	ENSG00000148154				46	0	0	48	25	34.2466
UGCG	0	genome.wustl.edu	37	9	114688676	114688676	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	114688676	114688676	C	T	SNP	UGCG	ENST00000374279	human	ensembl	74_37	+1	known	missense	c.458	p.T153M	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	UGCG	HGNC	ENSG00000148154				101	0	0	88	37	29.6
KIAA1958	0	genome.wustl.edu	37	9	115421687	115421687	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115421687	115421687	T	C	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1573	p.S525P	0.996	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				59	0	0	30	16	34.7826
KIAA1958	0	genome.wustl.edu	37	9	115421766	115421766	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115421766	115421766	C	T	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1652	p.S551L	0.996	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185				39	0	0	21	6	22.2222
INIP	0	genome.wustl.edu	37	9	115449805	115449805	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115449805	115449805	G	A	SNP	INIP	ENST00000374234	human	ensembl	74_37	-1	known	silent	c.147	p.C49	0.035	NULL	NULL	-	no_errors	INIP	HGNC	ENSG00000148153				91	0	0	57	32	35.9551
ZNF883	0	genome.wustl.edu	37	9	115759713	115759713	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115759713	115759713	C	T	SNP	ZNF883	ENST00000427548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF883	HGNC	ENSG00000228623				151	0	0	125	57	31.3187
ZFP37	0	genome.wustl.edu	37	9	115805311	115805311	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115805311	115805311	A	C	SNP	ZFP37	ENST00000553380	human	ensembl	74_37	-1	known	missense	c.1632	p.I544M	0.048	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP37	HGNC	ENSG00000136866				62	0	0	47	36	43.3735
FKBP15	0	genome.wustl.edu	37	9	115946040	115946040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	115946040	115946040	C	T	SNP	FKBP15	ENST00000238256	human	ensembl	74_37	-1	known	missense	c.1802	p.R601Q	1.000	superfamily_Regulat_G_prot_signal_superfam	pfam_PPIase_FKBP_dom,superfamily_Regulat_G_prot_signal_superfam,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP15	HGNC	ENSG00000119321				77	0	0	68	29	29.8969
PRPF4	0	genome.wustl.edu	37	9	116041260	116041260	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116041260	116041260	C	T	SNP	PRPF4	ENST00000374198	human	ensembl	74_37	+1	known	nonsense	c.244	p.R82*	0.986	NULL	pfam_WD40_repeat,pfam_PRP4-like,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875				136	0	0	69	44	38.9381
WDR31	0	genome.wustl.edu	37	9	116080896	116080896	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116080896	116080896	G	A	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	nonsense	c.802	p.R268*	0.185	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				105	0	0	69	31	31
WDR31	0	genome.wustl.edu	37	9	116094237	116094237	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116094237	116094237	G	A	SNP	WDR31	ENST00000374193	human	ensembl	74_37	-1	known	silent	c.66	p.V22	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR31	HGNC	ENSG00000148225				90	0	0	60	25	29.4118
RGS3	0	genome.wustl.edu	37	9	116269874	116269874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116269874	116269874	G	A	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.1393	p.D465N	1.000	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				14	0	0	5	3	37.5
RGS3	0	genome.wustl.edu	37	9	116303692	116303692	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116303692	116303692	G	A	SNP	RGS3	ENST00000317613	human	ensembl	74_37	+1	known	silent	c.1794	p.Q598	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,pfscan_C2_dom,pfscan_PDZ	-	no_errors	RGS3	HGNC	ENSG00000138835				358	0	0	211	103	32.8025
ZNF618	0	genome.wustl.edu	37	9	116812263	116812263	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116812263	116812263	C	T	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.2681	p.S894L	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				115	0	0	54	31	36.4706
COL27A1	0	genome.wustl.edu	37	9	116930507	116930507	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	116930507	116930507	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	silent	c.672	p.V224	0.999	superfamily_ConA-like_lec_gl_sf	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				134	0	0	57	32	35.9551
ORM2	0	genome.wustl.edu	37	9	117092235	117092235	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117092235	117092235	A	C	SNP	ORM2	ENST00000431067	human	ensembl	74_37	+1	known	missense	c.51	p.E17D	0.000	pfam_ApoM,pirsf_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_ApoM,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM2	HGNC	ENSG00000228278				28	0	0	17	11	39.2857
ORM2	0	genome.wustl.edu	37	9	117092416	117092416	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117092416	117092416	C	A	SNP	ORM2	ENST00000412657	human	ensembl	74_37	+1	known	missense	c.232	p.L78M	0.000	NULL	NULL	-	no_errors	ORM2	HGNC	ENSG00000228278				22	0	0	10	6	37.5
DFNB31	0	genome.wustl.edu	37	9	117266526	117266526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117266526	117266526	C	T	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	missense	c.556	p.D186N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				181	0	0	83	38	31.405
TNFSF8	0	genome.wustl.edu	37	9	117666356	117666356	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117666356	117666356	T	C	SNP	TNFSF8	ENST00000223795	human	ensembl	74_37	-1	known	missense	c.560	p.Y187C	0.998	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_CD30_ligand_type,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_CD30_ligand_type,pfscan_TNF_dom	-	no_errors	TNFSF8	HGNC	ENSG00000106952				212	1	0.469484	102	54	34.6154
TNC	0	genome.wustl.edu	37	9	117825464	117825464	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117825464	117825464	C	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.3765	p.E1255D	0.997	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				74	0	0	37	16	30.1887
TNC	0	genome.wustl.edu	37	9	117840406	117840406	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	117840406	117840406	G	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.2490	p.I830	0.297	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				84	0	0	49	28	36.3636
PAPPA	0	genome.wustl.edu	37	9	118974146	118974146	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	118974146	118974146	G	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.1853	p.G618V	1.000	pfam_Peptidase_M43	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				452	0	0	235	112	32.2767
PAPPA	0	genome.wustl.edu	37	9	118997781	118997781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	118997781	118997781	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.2597	p.A866V	1.000	superfamily_Fibronectin_type3	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				66	0	0	33	30	47.619
PAPPA	0	genome.wustl.edu	37	9	118997789	118997789	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	118997789	118997789	T	C	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.2605	p.L869	0.950	superfamily_Fibronectin_type3	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				73	0	0	38	30	44.1176
ASTN2	0	genome.wustl.edu	37	9	119188144	119188144	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	119188144	119188144	A	G	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.4006	p.S1336P	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				96	0	0	55	25	31.25
ASTN2	0	genome.wustl.edu	37	9	119625945	119625945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	119625945	119625945	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.1957	p.R653C	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				83	0	0	48	23	32.3944
CDK5RAP2	0	genome.wustl.edu	37	9	123215733	123215733	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123215733	123215733	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	splice_site	c.2793+1	e21+1	0.998	-	-	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				116	0	0	54	31	36.4706
C5	0	genome.wustl.edu	37	9	123725007	123725007	+	Silent	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123725007	123725007	G	T	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	silent	c.4446	p.L1482	0.978	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				136	0	0	125	50	28.5714
C5	0	genome.wustl.edu	37	9	123742403	123742403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123742403	123742403	G	A	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	missense	c.3616	p.R1206C	0.009	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				84	0	0	72	24	25
CNTRL	0	genome.wustl.edu	37	9	123912533	123912533	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123912533	123912533	G	T	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	missense	c.3735	p.M1245I	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				106	0	0	73	36	33.0275
CNTRL	0	genome.wustl.edu	37	9	123927254	123927254	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123927254	123927254	G	T	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	missense	c.5457	p.M1819I	0.724	superfamily_tRNA-bd_arm	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				61	0	0	44	26	37.1429
CNTRL	0	genome.wustl.edu	37	9	123928390	123928390	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	123928390	123928390	C	T	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	nonsense	c.5587	p.R1863*	0.983	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				48	0	0	21	12	36.3636
NDUFA8	0	genome.wustl.edu	37	9	124914534	124914534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	124914534	124914534	C	T	SNP	NDUFA8	ENST00000373768	human	ensembl	74_37	-1	known	missense	c.205	p.D69N	1.000	pirsf_NADH_Ub_cplx-1_asu_su-8	pfam_CHCH,pirsf_NADH_Ub_cplx-1_asu_su-8	-	no_errors	NDUFA8	HGNC	ENSG00000119421				67	0	0	42	20	32.2581
MORN5	0	genome.wustl.edu	37	9	124936902	124936902	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	124936902	124936902	C	T	SNP	MORN5	ENST00000536616	human	ensembl	74_37	+1	known	silent	c.435	p.N145	0.972	NULL	pfam_MORN,smart_MORN	-	no_errors	MORN5	HGNC	ENSG00000185681				140	0	0	61	29	32.2222
LHX6	0	genome.wustl.edu	37	9	124976602	124976602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	124976602	124976602	G	A	SNP	LHX6	ENST00000394319	human	ensembl	74_37	-1	known	missense	c.743	p.A248V	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX6	HGNC	ENSG00000106852				39	0	0	20	7	25.9259
RBM18	0	genome.wustl.edu	37	9	125009820	125009820	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125009820	125009820	G	A	SNP	RBM18	ENST00000417201	human	ensembl	74_37	-1	known	nonsense	c.304	p.R102*	0.995	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM18	HGNC	ENSG00000119446				84	0	0	61	21	25.6098
OR1J2	0	genome.wustl.edu	37	9	125273593	125273593	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125273593	125273593	G	A	SNP	OR1J2	ENST00000335302	human	ensembl	74_37	+1	known	silent	c.513	p.A171	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1J2	HGNC	ENSG00000197233				187	0	0	84	47	35.8779
OR1N1	0	genome.wustl.edu	37	9	125288673	125288673	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125288673	125288673	C	A	SNP	OR1N1	ENST00000304880	human	ensembl	74_37	-1	known	missense	c.900	p.K300N	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505				58	0	0	42	18	30
OR1L3	0	genome.wustl.edu	37	9	125437916	125437916	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125437916	125437916	A	G	SNP	OR1L3	ENST00000304820	human	ensembl	74_37	+1	known	missense	c.508	p.T170A	0.991	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L3	HGNC	ENSG00000171481				385	0	0	229	116	33.6232
OR1L4	0	genome.wustl.edu	37	9	125486541	125486541	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125486541	125486541	G	T	SNP	OR1L4	ENST00000259466	human	ensembl	74_37	+1	known	missense	c.273	p.K91N	0.048	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L4	HGNC	ENSG00000136939				162	0	0	134	13	8.84354
OR1K1	0	genome.wustl.edu	37	9	125562444	125562444	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125562444	125562444	T	G	SNP	OR1K1	ENST00000277309	human	ensembl	74_37	+1	known	missense	c.43	p.L15V	0.003	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1K1	HGNC	ENSG00000165204				55	0	0	33	16	32.6531
RC3H2	0	genome.wustl.edu	37	9	125616211	125616211	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125616211	125616211	G	A	SNP	RC3H2	ENST00000423239	human	ensembl	74_37	-1	known	missense	c.3137	p.S1046L	0.000	NULL	pfam_Znf_CCCH,smart_Znf_RING,smart_Znf_CCCH,pfscan_Znf_RING	-	no_errors	RC3H2	HGNC	ENSG00000056586				99	0	0	63	33	34.375
ZBTB6	0	genome.wustl.edu	37	9	125674239	125674239	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125674239	125674239	T	C	SNP	ZBTB6	ENST00000373659	human	ensembl	74_37	-1	known	missense	c.113	p.Y38C	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB6	HGNC	ENSG00000186130				177	0	0	104	52	33.3333
ZBTB26	0	genome.wustl.edu	37	9	125682174	125682174	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125682174	125682174	T	G	SNP	ZBTB26	ENST00000373654	human	ensembl	74_37	-1	known	missense	c.40	p.N14H	1.000	superfamily_BTB/POZ_fold	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB26	HGNC	ENSG00000171448				33	0	0	24	13	35.1351
RABGAP1	0	genome.wustl.edu	37	9	125758389	125758389	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125758389	125758389	C	A	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	silent	c.993	p.I331	1.000	pfam_Kinesin-like	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				94	0	0	80	32	28.5714
RABGAP1	0	genome.wustl.edu	37	9	125861055	125861055	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125861055	125861055	C	A	SNP	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	missense	c.2795	p.S932Y	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				74	0	0	42	24	36.3636
STRBP	0	genome.wustl.edu	37	9	125935984	125935984	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	125935984	125935984	A	G	SNP	STRBP	ENST00000348403	human	ensembl	74_37	-1	known	missense	c.362	p.V121A	1.000	pfam_DZF,smart_DZF	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STRBP	HGNC	ENSG00000165209				127	0	0	89	50	35.9712
LHX2	0	genome.wustl.edu	37	9	126777465	126777465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	126777465	126777465	C	T	SNP	LHX2	ENST00000373615	human	ensembl	74_37	+1	known	missense	c.388	p.R130C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX2	HGNC	ENSG00000106689				255	1	0.390625	138	56	28.866
TYRP1	0	genome.wustl.edu	37	9	12694255	12694255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	12694255	12694255	C	T	SNP	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	missense	c.259	p.R87W	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				49	0	0	21	12	36.3636
NR6A1	0	genome.wustl.edu	37	9	127289152	127289152	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	127289152	127289152	G	A	SNP	NR6A1	ENST00000487099	human	ensembl	74_37	-1	known	silent	c.1107	p.I369	0.917	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR6A1	HGNC	ENSG00000148200				142	0	0	67	45	40.1786
GOLGA1	0	genome.wustl.edu	37	9	127684102	127684102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	127684102	127684102	G	A	SNP	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	missense	c.631	p.R211C	0.188	NULL	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935				185	0	0	139	74	34.7418
GAPVD1	0	genome.wustl.edu	37	9	128086089	128086089	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	128086089	128086089	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	missense	c.1745	p.R582H	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219				107	0	0	52	35	40.2299
LURAP1L	0	genome.wustl.edu	37	9	12821683	12821683	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	12821683	12821683	A	G	SNP	LURAP1L	ENST00000319264	human	ensembl	74_37	+1	known	missense	c.611	p.D204G	1.000	NULL	NULL	-	no_errors	LURAP1L	HGNC	ENSG00000153714				212	0	0	146	76	34.2342
ZBTB34	0	genome.wustl.edu	37	9	129641682	129641682	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	129641682	129641682	T	C	SNP	ZBTB34	ENST00000319119	human	ensembl	74_37	+1	known	missense	c.4	p.S2P	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB34	HGNC	ENSG00000177125				172	0	0	67	49	42.2414
ANGPTL2	0	genome.wustl.edu	37	9	129870556	129870556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	129870556	129870556	G	A	SNP	ANGPTL2	ENST00000373425	human	ensembl	74_37	-1	known	missense	c.455	p.A152V	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPTL2	HGNC	ENSG00000136859				69	0	0	34	18	34.6154
RALGPS1	0	genome.wustl.edu	37	9	129974967	129974967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	129974967	129974967	C	T	SNP	RALGPS1	ENST00000259351	human	ensembl	74_37	+1	known	missense	c.1415	p.A472V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828				58	0	0	22	12	35.2941
SH2D3C	0	genome.wustl.edu	37	9	130536742	130536742	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	130536742	130536742	G	A	SNP	SH2D3C	ENST00000314830	human	ensembl	74_37	-1	known	silent	c.42	p.F14	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	SH2D3C	HGNC	ENSG00000095370				72	0	0	23	16	41.0256
FPGS	0	genome.wustl.edu	37	9	130569902	130569902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	130569902	130569902	G	A	SNP	FPGS	ENST00000373247	human	ensembl	74_37	+1	known	missense	c.679	p.D227N	1.000	superfamily_Mur_ligase_cen,tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877				68	0	0	21	13	38.2353
ST6GALNAC4	0	genome.wustl.edu	37	9	130670662	130670662	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	130670662	130670662	C	T	SNP	ST6GALNAC4	ENST00000467674	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ST6GALNAC4	HGNC	ENSG00000136840				100	0	0	45	23	33.8235
SLC25A25	0	genome.wustl.edu	37	9	130860921	130860921	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	130860921	130860921	C	T	SNP	SLC25A25	ENST00000373064	human	ensembl	74_37	+1	known	missense	c.76	p.L26F	1.000	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A25	HGNC	ENSG00000148339				167	0	0	97	42	30.2158
SLC27A4	0	genome.wustl.edu	37	9	131107806	131107806	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131107806	131107806	C	A	SNP	SLC27A4	ENST00000300456	human	ensembl	74_37	+1	known	silent	c.534	p.V178	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A4	HGNC	ENSG00000167114				22	0	0	15	5	25
URM1	0	genome.wustl.edu	37	9	131151722	131151722	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131151722	131151722	T	G	SNP	URM1	ENST00000452446	human	ensembl	74_37	+1	known	missense	c.371	p.L124R	0.000	NULL	pfam_Urm1,superfamily_Mopterin_synth/thiamin_S_b	-	no_errors	URM1	HGNC	ENSG00000167118				22	0	0	10	9	47.3684
SPTAN1	0	genome.wustl.edu	37	9	131374247	131374247	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131374247	131374247	A	C	SNP	SPTAN1	ENST00000476825	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPTAN1	HGNC	ENSG00000197694				88	0	0	61	30	32.967
ZER1	0	genome.wustl.edu	37	9	131503881	131503881	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131503881	131503881	T	G	SNP	ZER1	ENST00000291900	human	ensembl	74_37	-1	known	missense	c.1670	p.E557A	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ZER1	HGNC	ENSG00000160445				197	0	0	84	44	34.375
TBC1D13	0	genome.wustl.edu	37	9	131565546	131565546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131565546	131565546	G	T	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	missense	c.561	p.K187N	0.953	superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				92	0	0	51	13	20.3125
MPDZ	0	genome.wustl.edu	37	9	13168391	13168391	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	13168391	13168391	T	G	SNP	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	missense	c.3228	p.R1076S	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186				301	0	0	197	74	27.3063
PHYHD1	0	genome.wustl.edu	37	9	131703788	131703788	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131703788	131703788	G	A	SNP	PHYHD1	ENST00000308941	human	ensembl	74_37	+1	known	missense	c.746	p.R249H	0.002	NULL	pfam_Phytyl_CoA_dOase	-	no_errors	PHYHD1	HGNC	ENSG00000175287				194	0	0	62	36	36.7347
DOLK	0	genome.wustl.edu	37	9	131708138	131708138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131708138	131708138	G	A	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.1445	p.A482V	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				164	0	0	94	57	37.7483
DOLK	0	genome.wustl.edu	37	9	131708450	131708450	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131708450	131708450	T	C	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.1133	p.Y378C	1.000	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				237	1	0.420168	103	55	34.8101
NUP188	0	genome.wustl.edu	37	9	131730975	131730975	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131730975	131730975	A	G	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.776	p.D259G	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				161	0	0	85	53	38.4058
NUP188	0	genome.wustl.edu	37	9	131747191	131747191	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131747191	131747191	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.1974	p.M658I	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				107	0	0	47	39	45.3488
NUP188	0	genome.wustl.edu	37	9	131761490	131761490	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	131761490	131761490	G	A	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	silent	c.3555	p.T1185	0.893	NULL	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				141	0	0	87	26	23.0088
TOR1A	0	genome.wustl.edu	37	9	132584974	132584974	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	132584974	132584974	G	A	SNP	TOR1A	ENST00000351698	human	ensembl	74_37	-1	known	silent	c.330	p.F110	0.770	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1A	HGNC	ENSG00000136827				272	0	0	114	73	39.0374
USP20	0	genome.wustl.edu	37	9	132618599	132618599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	132618599	132618599	C	T	SNP	USP20	ENST00000315480	human	ensembl	74_37	+1	known	missense	c.95	p.S32L	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP20	HGNC	ENSG00000136878				251	0	0	131	58	30.6878
FNBP1	0	genome.wustl.edu	37	9	132658222	132658222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	132658222	132658222	C	T	SNP	FNBP1	ENST00000446176	human	ensembl	74_37	-1	known	missense	c.1741	p.E581K	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Ribosomal_S20,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239				78	0	0	41	16	28.0702
FNBP1	0	genome.wustl.edu	37	9	132665242	132665242	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	132665242	132665242	T	C	SNP	FNBP1	ENST00000446176	human	ensembl	74_37	-1	known	missense	c.1334	p.N445S	1.000	superfamily_HR1_rho-bd	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Ribosomal_S20,superfamily_HR1_rho-bd,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain	-	no_errors	FNBP1	HGNC	ENSG00000187239				19	0	0	5	6	54.5455
GPR107	0	genome.wustl.edu	37	9	132866788	132866788	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	132866788	132866788	C	T	SNP	GPR107	ENST00000372410	human	ensembl	74_37	+1	known	silent	c.1221	p.V407	0.665	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk,pfam_Intimal_thickness-rel_rcpt	-	no_errors	GPR107	HGNC	ENSG00000148358				50	0	0	33	10	23.2558
ABL1	0	genome.wustl.edu	37	9	133738166	133738166	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	133738166	133738166	A	G	SNP	ABL1	ENST00000372348	human	ensembl	74_37	+1	known	missense	c.623	p.E208G	1.000	pfam_SH2,smart_SH2,pfscan_SH2	pfam_F-actin_binding,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL1	HGNC	ENSG00000097007				81	0	0	47	19	28.7879
LAMC3	0	genome.wustl.edu	37	9	133920995	133920995	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	133920995	133920995	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.1467	p.C489	0.183	NULL	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				109	0	0	42	19	31.1475
ENSG00000246851	0	genome.wustl.edu	37	9	134067535	134067535	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	134067535	134067535	T	G	SNP	ENSG00000246851	ENST00000502188	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.108	-	-	-	no_errors	RP11-544A12.8	Clone_based_vega_gene	ENSG00000246851				16	0	0	10	9	47.3684
POMT1	0	genome.wustl.edu	37	9	134381847	134381847	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	134381847	134381847	G	T	SNP	POMT1	ENST00000483472	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMT1	HGNC	ENSG00000130714				193	0	0	126	48	27.5862
UCK1	0	genome.wustl.edu	37	9	134401365	134401365	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	134401365	134401365	C	T	SNP	UCK1	ENST00000372211	human	ensembl	74_37	-1	known	splice_site	c.619-1	e6-1	1.000	-	-	-	no_errors	UCK1	HGNC	ENSG00000130717				172	0	0	95	48	33.5664
RAPGEF1	0	genome.wustl.edu	37	9	134497187	134497187	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	134497187	134497187	T	G	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.1904	p.Q635P	1.000	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263				19	0	0	4	6	60
NTNG2	0	genome.wustl.edu	37	9	135073374	135073374	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135073374	135073374	A	G	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	missense	c.235	p.N79D	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				73	0	0	40	11	21.5686
SETX	0	genome.wustl.edu	37	9	135150684	135150684	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135150684	135150684	C	T	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	silent	c.7059	p.T2353	0.754	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				193	0	0	122	51	29.4798
SETX	0	genome.wustl.edu	37	9	135204697	135204697	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135204697	135204697	T	G	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.2288	p.E763A	0.005	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				140	0	0	98	62	38.75
SETX	0	genome.wustl.edu	37	9	135221766	135221766	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135221766	135221766	T	C	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	silent	c.270	p.V90	0.567	NULL	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				62	0	0	37	24	39.3443
TTF1	0	genome.wustl.edu	37	9	135251430	135251430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135251430	135251430	C	T	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.2590	p.D864N	0.976	NULL	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482				72	0	0	51	20	28.169
TSC1	0	genome.wustl.edu	37	9	135798984	135798984	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	135798984	135798984	C	A	SNP	TSC1	ENST00000461879	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSC1	HGNC	ENSG00000165699				34	0	0	25	4	13.7931
CACFD1	0	genome.wustl.edu	37	9	136330477	136330477	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136330477	136330477	G	A	SNP	CACFD1	ENST00000540581	human	ensembl	74_37	+1	known	silent	c.228	p.A76	0.382	pfam_TVP18/Ca-channel_flower	pfam_TVP18/Ca-channel_flower	-	no_errors	CACFD1	HGNC	ENSG00000160325				203	0	0	80	40	33.3333
ADAMTSL2	0	genome.wustl.edu	37	9	136412278	136412278	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136412278	136412278	G	T	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.1209	p.E403D	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				441	0	0	228	103	31.1178
DBH	0	genome.wustl.edu	37	9	136508639	136508639	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136508639	136508639	C	T	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.849	p.C283	0.853	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom,prints_Dopamine_b_mOase	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				125	0	0	64	23	26.4368
DBH	0	genome.wustl.edu	37	9	136509381	136509381	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136509381	136509381	T	C	SNP	DBH	ENST00000393056	human	ensembl	74_37	+1	known	silent	c.963	p.G321	0.011	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454				131	0	0	90	13	12.6214
DBH-AS1	0	genome.wustl.edu	37	9	136522377	136522377	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136522377	136522377	G	A	SNP	DBH-AS1	ENST00000425189	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DBH-AS1	HGNC	ENSG00000225756				70	0	0	34	16	32
BRD3	0	genome.wustl.edu	37	9	136913345	136913345	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	136913345	136913345	C	T	SNP	BRD3	ENST00000303407	human	ensembl	74_37	-1	known	missense	c.946	p.D316N	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD3	HGNC	ENSG00000169925				49	0	0	13	12	48
COL5A1	0	genome.wustl.edu	37	9	137630640	137630640	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	137630640	137630640	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.1480	p.D494N	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				127	0	0	76	9	10.5882
LCN9	0	genome.wustl.edu	37	9	138556136	138556136	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	138556136	138556136	C	T	SNP	LCN9	ENST00000277526	human	ensembl	74_37	+1	known	silent	c.225	p.F75	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Odour-bd,prints_Blactoglobulin	-	no_errors	LCN9	HGNC	ENSG00000148386				134	0	0	74	38	33.9286
CAMSAP1	0	genome.wustl.edu	37	9	138706958	138706958	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	138706958	138706958	C	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.4524	p.K1508N	1.000	pfam_CKK_domain,superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				34	0	0	17	8	32
SDCCAG3	0	genome.wustl.edu	37	9	139298607	139298607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139298607	139298607	G	A	SNP	SDCCAG3	ENST00000357365	human	ensembl	74_37	-1	known	missense	c.1108	p.R370W	0.983	NULL	NULL	-	no_errors	SDCCAG3	HGNC	ENSG00000165689				321	0	0	145	65	30.9524
SEC16A	0	genome.wustl.edu	37	9	139371654	139371654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139371654	139371654	C	A	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.414	p.M138I	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				211	0	0	89	54	37.7622
NOTCH1	0	genome.wustl.edu	37	9	139391777	139391777	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139391777	139391777	C	T	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	silent	c.6414	p.P2138	0.958	pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				85	0	0	34	14	29.1667
FAM69B	0	genome.wustl.edu	37	9	139617800	139617800	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139617800	139617800	C	T	SNP	FAM69B	ENST00000371692	human	ensembl	74_37	+1	known	silent	c.870	p.Y290	0.964	pfam_FAM69_kinase_dom	pfam_FAM69_kinase_dom	-	no_errors	FAM69B	HGNC	ENSG00000165716				103	0	0	59	31	34.4444
LCN10	0	genome.wustl.edu	37	9	139637344	139637344	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139637344	139637344	C	T	SNP	LCN10	ENST00000497771	human	ensembl	74_37	-1	known	silent	c.12	p.G4	0.031	NULL	superfamily_Calycin-like	-	no_errors	LCN10	HGNC	ENSG00000187922				50	0	0	31	20	39.2157
LCN15	0	genome.wustl.edu	37	9	139658209	139658209	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	139658209	139658209	G	A	SNP	LCN15	ENST00000316144	human	ensembl	74_37	-1	known	missense	c.263	p.A88V	0.016	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_A1-microglobln	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_PstgldnD_synth,prints_Lipocalin,prints_A1-microglobln,prints_Blactoglobulin	-	no_errors	LCN15	HGNC	ENSG00000177984				125	0	0	39	22	36.0656
NDOR1	0	genome.wustl.edu	37	9	140108241	140108241	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140108241	140108241	C	T	SNP	NDOR1	ENST00000371521	human	ensembl	74_37	+1	known	silent	c.321	p.F107	0.997	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth	pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NDOR1	HGNC	ENSG00000188566				46	0	0	17	7	29.1667
FAM166A	0	genome.wustl.edu	37	9	140140191	140140191	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140140191	140140191	G	A	SNP	FAM166A	ENST00000344774	human	ensembl	74_37	-1	known	silent	c.171	p.S57	0.805	pfam_UPF0573/UPF0605	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163				123	0	0	38	23	37.7049
EHMT1	0	genome.wustl.edu	37	9	140646849	140646849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140646849	140646849	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.1237	p.E413K	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				45	0	0	24	10	29.4118
EHMT1	0	genome.wustl.edu	37	9	140671280	140671280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140671280	140671280	G	A	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.2002	p.D668N	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				67	0	0	29	18	38.2979
EHMT1	0	genome.wustl.edu	37	9	140674138	140674138	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140674138	140674138	A	G	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	silent	c.2244	p.Q748	0.997	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090				66	0	0	57	4	6.55738
CACNA1B	0	genome.wustl.edu	37	9	140777318	140777318	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140777318	140777318	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.513	p.F171	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				416	0	0	239	51	17.5862
CACNA1B	0	genome.wustl.edu	37	9	140954118	140954118	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	140954118	140954118	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.4600	p.D1534N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				157	0	0	77	25	24.5098
CACNA1B	0	genome.wustl.edu	37	9	141016245	141016245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	141016245	141016245	G	A	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.6817	p.A2273T	0.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				98	0	0	35	24	40.678
ZDHHC21	0	genome.wustl.edu	37	9	14619044	14619044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	14619044	14619044	G	A	SNP	ZDHHC21	ENST00000380916	human	ensembl	74_37	-1	known	missense	c.718	p.R240C	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC21	HGNC	ENSG00000175893				83	0	0	40	26	39.3939
FREM1	0	genome.wustl.edu	37	9	14737488	14737488	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	14737488	14737488	T	G	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.6449	p.K2150T	0.992	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				39	0	0	14	14	50
FREM1	0	genome.wustl.edu	37	9	14748531	14748531	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	14748531	14748531	A	G	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	silent	c.5667	p.G1889	0.409	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				325	0	0	182	58	24.1667
FREM1	0	genome.wustl.edu	37	9	14851533	14851533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	14851533	14851533	C	T	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.904	p.A302T	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946				174	0	0	102	41	28.6713
TTC39B	0	genome.wustl.edu	37	9	15192692	15192692	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	15192692	15192692	C	A	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	nonsense	c.826	p.E276*	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158				109	0	0	52	28	35
CCDC171	0	genome.wustl.edu	37	9	15571628	15571628	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	15571628	15571628	G	T	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.48	p.K16N	0.998	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				52	0	0	59	26	30.5882
CCDC171	0	genome.wustl.edu	37	9	15678796	15678796	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	15678796	15678796	G	T	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	nonsense	c.1117	p.E373*	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				51	0	0	37	23	38.3333
CCDC171	0	genome.wustl.edu	37	9	15678883	15678883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	15678883	15678883	G	A	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.1204	p.E402K	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				34	0	0	38	20	34.4828
CCDC171	0	genome.wustl.edu	37	9	15874610	15874610	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	15874610	15874610	G	T	SNP	CCDC171	ENST00000380701	human	ensembl	74_37	+1	known	missense	c.3549	p.E1183D	1.000	NULL	superfamily_STAT_TF_coiled-coil	-	no_errors	CCDC171	HGNC	ENSG00000164989				172	0	0	83	46	35.6589
CNTLN	0	genome.wustl.edu	37	9	17462966	17462966	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	17462966	17462966	T	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.3359	p.F1120C	0.829	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				67	0	0	54	31	36.4706
SH3GL2	0	genome.wustl.edu	37	9	17786463	17786463	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	17786463	17786463	C	T	SNP	SH3GL2	ENST00000380607	human	ensembl	74_37	+1	known	missense	c.272	p.A91V	0.984	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,pfam_BAR_dom-cont,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3GL2	HGNC	ENSG00000107295				130	0	0	53	41	43.617
HAUS6	0	genome.wustl.edu	37	9	19058433	19058433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	19058433	19058433	C	T	SNP	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	missense	c.2332	p.E778K	1.000	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874				65	0	0	34	24	41.3793
PLIN2	0	genome.wustl.edu	37	9	19116286	19116286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	19116286	19116286	C	T	SNP	PLIN2	ENST00000276914	human	ensembl	74_37	-1	known	missense	c.1274	p.S425N	0.903	pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872				150	0	0	71	35	33.0189
DENND4C	0	genome.wustl.edu	37	9	19331982	19331982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	19331982	19331982	A	C	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.2260	p.K754Q	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				56	0	0	43	15	25.8621
DENND4C	0	genome.wustl.edu	37	9	19371815	19371815	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	19371815	19371815	A	T	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.5590	p.I1864F	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145				63	0	0	53	32	37.6471
FOCAD	0	genome.wustl.edu	37	9	20720434	20720434	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	20720434	20720434	G	A	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.188	p.R63Q	0.988	pfam_DUF3730,superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				251	0	0	127	53	29.4444
FOCAD	0	genome.wustl.edu	37	9	20758164	20758164	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	20758164	20758164	A	C	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	silent	c.468	p.T156	0.071	pfam_DUF3730,superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				61	0	0	21	15	41.6667
FOCAD	0	genome.wustl.edu	37	9	20770060	20770060	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	20770060	20770060	G	A	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	silent	c.729	p.A243	0.792	pfam_DUF3730	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				120	0	0	84	56	40
FOCAD	0	genome.wustl.edu	37	9	20907233	20907233	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	20907233	20907233	A	C	SNP	FOCAD	ENST00000338382	human	ensembl	74_37	+1	known	missense	c.2710	p.I904L	0.370	superfamily_ARM-type_fold	pfam_DUF3028,pfam_DUF3730,superfamily_ARM-type_fold	-	no_errors	FOCAD	HGNC	ENSG00000188352				177	0	0	154	9	5.52147
IFNA10	0	genome.wustl.edu	37	9	21206631	21206631	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21206631	21206631	C	A	SNP	IFNA10	ENST00000357374	human	ensembl	74_37	-1	known	nonsense	c.466	p.E156*	0.435	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803				516	0	0	331	163	32.996
IFNA16	0	genome.wustl.edu	37	9	21217072	21217072	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21217072	21217072	G	T	SNP	IFNA16	ENST00000380216	human	ensembl	74_37	-1	known	missense	c.233	p.S78Y	0.014	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA16	HGNC	ENSG00000147885				255	0	0	146	71	32.7189
KLHL9	0	genome.wustl.edu	37	9	21333694	21333694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21333694	21333694	G	A	SNP	KLHL9	ENST00000359039	human	ensembl	74_37	-1	known	missense	c.1165	p.R389C	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642				122	0	0	51	27	34.6154
KLHL9	0	genome.wustl.edu	37	9	21334480	21334480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21334480	21334480	C	T	SNP	KLHL9	ENST00000359039	human	ensembl	74_37	-1	known	missense	c.379	p.E127K	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL9	HGNC	ENSG00000198642				124	0	0	98	41	29.4964
IFNA13	0	genome.wustl.edu	37	9	21367840	21367840	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21367840	21367840	C	A	SNP	IFNA13	ENST00000449498	human	ensembl	74_37	-1	known	missense	c.170	p.R57I	0.005	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA13	HGNC	ENSG00000233816				52	0	0	40	17	29.8246
IFNA2	0	genome.wustl.edu	37	9	21385197	21385197	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	21385197	21385197	C	A	SNP	IFNA2	ENST00000380206	human	ensembl	74_37	-1	known	missense	c.132	p.M44I	0.369	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA2	HGNC	ENSG00000188379				227	0	0	138	50	26.5957
C9orf66	0	genome.wustl.edu	37	9	214896	214896	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	214896	214896	T	G	SNP	C9orf66	ENST00000382387	human	ensembl	74_37	-1	known	missense	c.501	p.E167D	0.001	NULL	NULL	-	no_errors	C9orf66	HGNC	ENSG00000183784				29	0	0	14	6	30
SMARCA2	0	genome.wustl.edu	37	9	2161877	2161877	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	2161877	2161877	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.4173	p.I1391	0.865	superfamily_Bromodomain,smart_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				46	0	0	34	19	35.8491
IFT74	0	genome.wustl.edu	37	9	27048155	27048155	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	27048155	27048155	C	T	SNP	IFT74	ENST00000380062	human	ensembl	74_37	+1	known	missense	c.1216	p.R406C	1.000	NULL	NULL	-	no_errors	IFT74	HGNC	ENSG00000096872				66	0	0	44	23	34.3284
TEK	0	genome.wustl.edu	37	9	27202837	27202837	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	27202837	27202837	A	C	SNP	TEK	ENST00000380036	human	ensembl	74_37	+1	known	missense	c.1929	p.E643D	0.994	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156				125	0	0	73	39	34.8214
LINGO2	0	genome.wustl.edu	37	9	27949023	27949023	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	27949023	27949023	G	T	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	nonsense	c.1647	p.C549*	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				124	0	0	86	29	25.2174
LINGO2	0	genome.wustl.edu	37	9	27949138	27949138	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	27949138	27949138	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.1532	p.A511V	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				182	0	0	104	48	31.5789
TAF1L	0	genome.wustl.edu	37	9	32630386	32630386	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	32630386	32630386	T	C	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.5192	p.K1731R	0.998	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				306	0	0	136	74	35.2381
TAF1L	0	genome.wustl.edu	37	9	32630947	32630947	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	32630947	32630947	G	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.4631	p.S1544Y	1.000	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				129	0	0	88	35	28.4553
TAF1L	0	genome.wustl.edu	37	9	32632206	32632206	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	32632206	32632206	C	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.3372	p.E1124D	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				141	0	0	54	18	25
TAF1L	0	genome.wustl.edu	37	9	32633110	32633110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	32633110	32633110	C	T	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.2468	p.R823Q	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				169	0	0	89	57	39.0411
NOL6	0	genome.wustl.edu	37	9	33472254	33472254	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	33472254	33472254	G	A	SNP	NOL6	ENST00000297990	human	ensembl	74_37	-1	known	missense	c.211	p.R71C	1.000	NULL	pfam_Nrap	-	no_errors	NOL6	HGNC	ENSG00000165271				144	0	0	49	32	39.5062
ANKRD18B	0	genome.wustl.edu	37	9	33529130	33529130	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	33529130	33529130	A	C	SNP	ANKRD18B	ENST00000290943	human	ensembl	74_37	+1	known	silent	c.454	p.R152	0.071	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453				43	0	0	33	17	34
DOCK8	0	genome.wustl.edu	37	9	336642	336642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	336642	336642	C	T	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.1346	p.A449V	0.999	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				76	0	0	33	23	41.0714
DOCK8	0	genome.wustl.edu	37	9	336644	336644	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	336644	336644	C	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.1348	p.L450I	0.988	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099				77	0	0	34	24	41.3793
PTENP1	0	genome.wustl.edu	37	9	33676442	33676442	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	33676442	33676442	G	T	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				83	0	0	66	24	26.6667
UBAP2	0	genome.wustl.edu	37	9	33953403	33953403	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	33953403	33953403	T	G	SNP	UBAP2	ENST00000360802	human	ensembl	74_37	-1	known	missense	c.936	p.E312D	0.994	NULL	pfam_DUF3697_Uba2,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAP2	HGNC	ENSG00000137073				67	0	0	39	28	41.791
DCAF12	0	genome.wustl.edu	37	9	34107458	34107458	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	34107458	34107458	C	T	SNP	DCAF12	ENST00000361264	human	ensembl	74_37	-1	known	missense	c.439	p.E147K	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12	HGNC	ENSG00000198876				124	1	0.8	71	31	30.3922
NUDT2	0	genome.wustl.edu	37	9	34339065	34339065	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	34339065	34339065	A	C	SNP	NUDT2	ENST00000346365	human	ensembl	74_37	+1	known	missense	c.28	p.I10L	1.000	superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Tetra_PHTase	-	no_errors	NUDT2	HGNC	ENSG00000164978				125	0	0	75	31	29.2453
DNAI1	0	genome.wustl.edu	37	9	34514589	34514589	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	34514589	34514589	G	A	SNP	DNAI1	ENST00000485580	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.640	-	-	-	no_errors	DNAI1	HGNC	ENSG00000122735				219	0	0	90	46	33.8235
CCL27	0	genome.wustl.edu	37	9	34662389	34662389	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	34662389	34662389	G	A	SNP	CCL27	ENST00000259631	human	ensembl	74_37	-1	known	missense	c.95	p.A32V	0.786	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom	-	no_errors	CCL27	HGNC	ENSG00000213927				67	0	0	31	19	38
CCL19	0	genome.wustl.edu	37	9	34689961	34689961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	34689961	34689961	C	T	SNP	CCL19	ENST00000378800	human	ensembl	74_37	-1	known	missense	c.242	p.R81H	0.968	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL19	HGNC	ENSG00000172724				84	0	0	45	20	30.7692
C9orf131	0	genome.wustl.edu	37	9	35043642	35043642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35043642	35043642	C	T	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.1016	p.P339L	0.000	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				422	0	0	267	128	32.4051
C9orf131	0	genome.wustl.edu	37	9	35044662	35044662	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35044662	35044662	A	G	SNP	C9orf131	ENST00000312292	human	ensembl	74_37	+1	known	missense	c.2036	p.N679S	0.015	NULL	NULL	-	no_errors	C9orf131	HGNC	ENSG00000174038				99	0	0	50	25	33.3333
PIGO	0	genome.wustl.edu	37	9	35094318	35094318	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35094318	35094318	C	A	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	missense	c.550	p.D184Y	1.000	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				91	0	0	43	18	29.5082
PIGO	0	genome.wustl.edu	37	9	35095206	35095206	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35095206	35095206	C	T	SNP	PIGO	ENST00000341666	human	ensembl	74_37	-1	known	silent	c.357	p.R119	0.993	superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	PIGO	HGNC	ENSG00000165282				190	0	0	88	46	34.3284
FAM214B	0	genome.wustl.edu	37	9	35108146	35108146	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35108146	35108146	C	T	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	silent	c.126	p.A42	0.007	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				35	0	0	20	5	20
ATP8B5P	0	genome.wustl.edu	37	9	35449974	35449974	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35449974	35449974	C	A	SNP	ATP8B5P	ENST00000430846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.572	-	-	-	no_errors	ATP8B5P	HGNC	ENSG00000179766				80	0	0	68	19	21.8391
SPAG8	0	genome.wustl.edu	37	9	35808275	35808275	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	35808275	35808275	G	A	SNP	SPAG8	ENST00000340291	human	ensembl	74_37	-1	known	silent	c.1401	p.C467	0.013	NULL	prints_Antifreeze_1	-	no_errors	SPAG8	HGNC	ENSG00000137098				77	0	0	46	18	28.125
MELK	0	genome.wustl.edu	37	9	36665442	36665442	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	36665442	36665442	A	C	SNP	MELK	ENST00000298048	human	ensembl	74_37	+1	known	missense	c.1272	p.E424D	0.931	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304				99	0	0	89	8	8.24742
ZCCHC7	0	genome.wustl.edu	37	9	37356833	37356833	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37356833	37356833	A	G	SNP	ZCCHC7	ENST00000336755	human	ensembl	74_37	+1	known	silent	c.1200	p.V400	1.000	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC7	HGNC	ENSG00000147905				56	0	0	43	19	30.6452
ZBTB5	0	genome.wustl.edu	37	9	37440877	37440877	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37440877	37440877	T	C	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	missense	c.1672	p.T558A	0.018	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				71	0	0	31	15	32.6087
ZBTB5	0	genome.wustl.edu	37	9	37442225	37442225	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37442225	37442225	C	A	SNP	ZBTB5	ENST00000307750	human	ensembl	74_37	-1	known	missense	c.324	p.L108F	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB5	HGNC	ENSG00000168795				188	0	0	75	51	40.4762
POLR1E	0	genome.wustl.edu	37	9	37501836	37501836	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37501836	37501836	G	T	SNP	POLR1E	ENST00000377792	human	ensembl	74_37	+1	known	missense	c.1281	p.E427D	1.000	pfam_RNA_pol-assoc_fac_A49-like	pfam_RNA_pol-assoc_fac_A49-like	-	no_errors	POLR1E	HGNC	ENSG00000137054				66	0	0	34	18	34.6154
TOMM5	0	genome.wustl.edu	37	9	37592334	37592334	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37592334	37592334	G	T	SNP	TOMM5	ENST00000544379	human	ensembl	74_37	-1	known	missense	c.196	p.H66N	0.000	NULL	NULL	-	no_errors	TOMM5	HGNC	ENSG00000175768				21	0	0	20	5	20
FRMPD1	0	genome.wustl.edu	37	9	37740573	37740573	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37740573	37740573	T	G	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.2048	p.F683C	0.002	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				86	0	0	44	14	24.1379
FRMPD1	0	genome.wustl.edu	37	9	37744622	37744622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37744622	37744622	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.2593	p.D865N	0.033	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				91	0	0	42	25	37.3134
TRMT10B	0	genome.wustl.edu	37	9	37769953	37769953	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37769953	37769953	G	A	SNP	TRMT10B	ENST00000297994	human	ensembl	74_37	+1	known	missense	c.589	p.E197K	1.000	pfam_tRNA_m1G_MeTrfase	pfam_tRNA_m1G_MeTrfase	-	no_errors	TRMT10B	HGNC	ENSG00000165275				244	0	0	127	74	36.8159
DCAF10	0	genome.wustl.edu	37	9	37861675	37861675	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	37861675	37861675	A	G	SNP	DCAF10	ENST00000483167	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF10	HGNC	ENSG00000122741				15	0	0	5	3	37.5
SPATA31A3	0	genome.wustl.edu	37	9	40702862	40702862	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	40702862	40702862	A	G	SNP	SPATA31A3	ENST00000356699	human	ensembl	74_37	+1	known	silent	c.519	p.P173	0.000	NULL	NULL	-	no_errors	SPATA31A3	HGNC	ENSG00000147926				243	0	0	142	41	22.4044
SPATA31A6	0	genome.wustl.edu	37	9	43627815	43627815	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	43627815	43627815	C	A	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.872	p.C291F	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				440	0	0	220	109	33.1307
RCL1	0	genome.wustl.edu	37	9	4793106	4793106	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	4793106	4793106	G	A	SNP	RCL1	ENST00000381750	human	ensembl	74_37	+1	known	silent	c.15	p.A5	0.996	pirsf_RNA3'_term_phos_cyc	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,pirsf_RNA3'_term_phos_cyc,tigrfam_RNA3'_term_phos_cyc_type_2	-	no_errors	RCL1	HGNC	ENSG00000120158				36	0	0	15	13	46.4286
JAK2	0	genome.wustl.edu	37	9	5022092	5022092	+	Silent	SNP	A	A	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5022092	5022092	A	T	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	silent	c.105	p.I35	0.331	smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				115	0	0	62	48	43.6364
JAK2	0	genome.wustl.edu	37	9	5054708	5054708	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5054708	5054708	T	C	SNP	JAK2	ENST00000381652	human	ensembl	74_37	+1	known	missense	c.760	p.Y254H	1.000	superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak2,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK2	HGNC	ENSG00000096968				120	0	0	77	37	32.4561
PDCD1LG2	0	genome.wustl.edu	37	9	5534983	5534983	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5534983	5534983	A	G	SNP	PDCD1LG2	ENST00000397747	human	ensembl	74_37	+1	known	silent	c.294	p.G98	0.010	smart_Ig_sub	pfam_CD80_C2-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	PDCD1LG2	HGNC	ENSG00000197646				64	0	0	42	20	32.2581
KIAA1432	0	genome.wustl.edu	37	9	5689981	5689981	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5689981	5689981	T	G	SNP	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	missense	c.38	p.F13C	1.000	superfamily_WD40_repeat_dom	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036				69	0	0	66	29	30.5263
KIAA1432	0	genome.wustl.edu	37	9	5763584	5763584	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5763584	5763584	A	G	SNP	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	missense	c.2320	p.T774A	0.056	pfam_Ribosome_control_1	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036				155	0	0	72	36	33.3333
KIAA2026	0	genome.wustl.edu	37	9	5920617	5920617	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	5920617	5920617	A	C	SNP	KIAA2026	ENST00000399933	human	ensembl	74_37	-1	novel	missense	c.5379	p.I1793M	0.657	NULL	superfamily_Bromodomain	-	no_errors	KIAA2026	HGNC	ENSG00000183354				540	0	0	303	168	35.6688
RANBP6	0	genome.wustl.edu	37	9	6015379	6015379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	6015379	6015379	G	A	SNP	RANBP6	ENST00000259569	human	ensembl	74_37	-1	known	missense	c.229	p.L77F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	RANBP6	HGNC	ENSG00000137040				153	0	0	80	36	31.0345
IL33	0	genome.wustl.edu	37	9	6252976	6252976	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	6252976	6252976	A	C	SNP	IL33	ENST00000381434	human	ensembl	74_37	+1	known	missense	c.454	p.K152Q	0.000	NULL	NULL	-	no_errors	IL33	HGNC	ENSG00000137033				51	0	0	33	13	28.2609
UHRF2	0	genome.wustl.edu	37	9	6434268	6434268	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	6434268	6434268	G	T	SNP	UHRF2	ENST00000469298	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UHRF2	HGNC	ENSG00000147854				15	0	0	11	5	31.25
GLDC	0	genome.wustl.edu	37	9	6553497	6553497	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	6553497	6553497	G	A	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	silent	c.2328	p.L776	0.993	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				106	0	0	62	26	29.5455
GLDC	0	genome.wustl.edu	37	9	6595109	6595109	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	6595109	6595109	G	A	SNP	GLDC	ENST00000321612	human	ensembl	74_37	-1	known	missense	c.1166	p.A389V	1.000	pfam_GDC-P_N,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	pfam_GDC-P_N,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,tigrfam_GDC_P_homo	-	no_errors	GLDC	HGNC	ENSG00000178445				188	0	0	92	64	41.0256
ENSG00000227582	0	genome.wustl.edu	37	9	66517208	66517208	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	66517208	66517208	C	T	SNP	ENSG00000227582	ENST00000590130	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-262H14.7	Clone_based_vega_gene	ENSG00000227582				126	0	0	74	14	15.9091
CBWD6	0	genome.wustl.edu	37	9	69205480	69205480	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	69205480	69205480	C	A	SNP	CBWD6	ENST00000377457	human	ensembl	74_37	-1	known	missense	c.1058	p.R353I	1.000	pfam_Cbl_biosynth_CobW-like_C,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	pfam_CobW/HypB/UreG_dom,pfam_Cbl_biosynth_CobW-like_C,superfamily_P-loop_NTPase,superfamily_Cbl_biosynth_CobW-like_C,smart_Cbl_biosynth_CobW-like_C	-	no_errors	CBWD6	HGNC	ENSG00000204790				163	0	0	122	56	31.4607
ANKRD20A4	0	genome.wustl.edu	37	9	69423516	69423516	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	69423516	69423516	T	G	SNP	ANKRD20A4	ENST00000357336	human	ensembl	74_37	+1	known	silent	c.1812	p.A604	0.846	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014				49	0	0	34	23	40.3509
FOXD4L5	0	genome.wustl.edu	37	9	70177908	70177908	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	70177908	70177908	T	C	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.76	p.K26E	0.821	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779				36	0	0	20	9	31.0345
PGM5	0	genome.wustl.edu	37	9	71114209	71114209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	71114209	71114209	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.1546	p.R516W	0.987	NULL	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				133	0	0	65	45	40.9091
KANK1	0	genome.wustl.edu	37	9	712098	712098	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	712098	712098	G	T	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.1332	p.M444I	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104				116	0	0	48	19	28.3582
FAM122A	0	genome.wustl.edu	37	9	71395903	71395903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	71395903	71395903	G	A	SNP	FAM122A	ENST00000394264	human	ensembl	74_37	+1	known	missense	c.823	p.A275T	0.957	NULL	NULL	-	no_errors	FAM122A	HGNC	ENSG00000187866				354	0	0	224	118	34.5029
APBA1	0	genome.wustl.edu	37	9	72131279	72131279	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	72131279	72131279	G	A	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	missense	c.848	p.S283L	0.999	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282				39	0	0	22	11	33.3333
SMC5	0	genome.wustl.edu	37	9	72893538	72893538	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	72893538	72893538	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	silent	c.675	p.L225	0.595	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				57	0	0	45	12	21.0526
SMC5	0	genome.wustl.edu	37	9	72962937	72962937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	72962937	72962937	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	missense	c.2872	p.L958F	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				26	0	0	24	12	33.3333
SMC5	0	genome.wustl.edu	37	9	72965072	72965072	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	72965072	72965072	C	T	SNP	SMC5	ENST00000361138	human	ensembl	74_37	+1	known	nonsense	c.2932	p.R978*	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	-	no_errors	SMC5	HGNC	ENSG00000198887				92	0	0	52	40	43.4783
TRPM3	0	genome.wustl.edu	37	9	73442905	73442905	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	73442905	73442905	A	C	SNP	TRPM3	ENST00000423814	human	ensembl	74_37	-1	known	missense	c.837	p.N279K	0.999	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				192	0	0	97	36	27.0677
TMEM2	0	genome.wustl.edu	37	9	74349809	74349809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	74349809	74349809	C	T	SNP	TMEM2	ENST00000377044	human	ensembl	74_37	-1	known	missense	c.1306	p.A436T	1.000	superfamily_Pectin_lyase_fold/virulence	pfam_G8_domain,superfamily_Pectin_lyase_fold/virulence	-	no_errors	TMEM2	HGNC	ENSG00000135048				180	0	0	107	59	35.5422
TMC1	0	genome.wustl.edu	37	9	75420302	75420302	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	75420302	75420302	T	G	SNP	TMC1	ENST00000297784	human	ensembl	74_37	+1	known	missense	c.1571	p.F524C	1.000	pfam_TMC	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091				168	0	0	155	65	29.5455
TRPM6	0	genome.wustl.edu	37	9	77362808	77362808	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	77362808	77362808	C	A	SNP	TRPM6	ENST00000360774	human	ensembl	74_37	-1	known	missense	c.5080	p.D1694Y	0.992	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				70	0	0	81	24	22.8571
TRPM6	0	genome.wustl.edu	37	9	77377203	77377203	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	77377203	77377203	C	A	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	nonsense	c.4384	p.E1462*	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				145	0	0	98	46	31.9444
VPS13A	0	genome.wustl.edu	37	9	79875040	79875040	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	79875040	79875040	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.2327	p.R776Q	0.996	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				41	0	0	33	13	28.2609
VPS13A	0	genome.wustl.edu	37	9	79908403	79908403	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	79908403	79908403	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	silent	c.3486	p.T1162	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				46	0	0	44	17	27.8689
VPS13A	0	genome.wustl.edu	37	9	79952328	79952328	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	79952328	79952328	A	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.6253	p.K2085Q	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				57	0	0	54	38	41.3043
GNA14	0	genome.wustl.edu	37	9	80043929	80043929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	80043929	80043929	C	T	SNP	GNA14	ENST00000341700	human	ensembl	74_37	-1	known	missense	c.617	p.R206Q	1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_Q	-	no_errors	GNA14	HGNC	ENSG00000156049				248	1	0.401606	135	74	35.4067
CEP78	0	genome.wustl.edu	37	9	80863264	80863264	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	80863264	80863264	A	C	SNP	CEP78	ENST00000376597	human	ensembl	74_37	+1	known	missense	c.950	p.K317T	0.811	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	CEP78	HGNC	ENSG00000148019				28	0	0	23	11	32.3529
PTPRD	0	genome.wustl.edu	37	9	8317890	8317890	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	8317890	8317890	T	C	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	missense	c.5723	p.D1908G	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				196	0	0	129	49	27.5281
SPATA31D5P	0	genome.wustl.edu	37	9	84532096	84532096	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	84532096	84532096	G	A	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.122	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				78	0	0	34	24	41.3793
SPATA31D5P	0	genome.wustl.edu	37	9	84534584	84534584	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	84534584	84534584	G	T	SNP	SPATA31D5P	ENST00000527857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA31D5P	HGNC	ENSG00000240632				22	0	0	11	5	31.25
SPATA31D1	0	genome.wustl.edu	37	9	84607583	84607583	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	84607583	84607583	A	C	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.2198	p.N733T	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				72	0	0	41	27	39.7059
SPATA31D1	0	genome.wustl.edu	37	9	84608292	84608292	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	84608292	84608292	T	C	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.2907	p.F969	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				273	0	0	127	61	32.4468
RASEF	0	genome.wustl.edu	37	9	85630729	85630729	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	85630729	85630729	C	A	SNP	RASEF	ENST00000376447	human	ensembl	74_37	-1	known	missense	c.756	p.K252N	0.985	superfamily_Vinculin/catenin	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_Vinculin/catenin,smart_EF_hand_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105				350	0	0	183	100	35.3357
FRMD3	0	genome.wustl.edu	37	9	85964665	85964665	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	85964665	85964665	T	C	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	silent	c.303	p.P101	1.000	pfam_FERM_N,smart_Band_41_domain,pfscan_FERM_domain,prints_Ez/rad/moesin_like	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				34	0	0	20	5	20
C9orf64	0	genome.wustl.edu	37	9	86571085	86571085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	86571085	86571085	C	T	SNP	C9orf64	ENST00000376344	human	ensembl	74_37	-1	known	missense	c.331	p.D111N	1.000	pfam_DUF2419	pfam_DUF2419	-	no_errors	C9orf64	HGNC	ENSG00000165118				165	0	0	96	46	32.3944
RMI1	0	genome.wustl.edu	37	9	86617293	86617293	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	86617293	86617293	T	G	SNP	RMI1	ENST00000325875	human	ensembl	74_37	+1	known	missense	c.1392	p.C464W	0.001	NULL	pfam_DUF1767	-	no_errors	RMI1	HGNC	ENSG00000178966				69	0	0	69	30	30.303
SLC28A3	0	genome.wustl.edu	37	9	86928299	86928299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	86928299	86928299	C	T	SNP	SLC28A3	ENST00000376238	human	ensembl	74_37	-1	known	missense	c.131	p.S44N	0.000	NULL	pfam_Nucleos_tra2_C,pfam_Nuclsd_transpt2,pfam_Nucleoside_recog_Gate,tigrfam_C_nuclsd_transpt_met_bac	-	no_errors	SLC28A3	HGNC	ENSG00000197506				78	0	0	42	22	34.375
NTRK2	0	genome.wustl.edu	37	9	87339221	87339221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	87339221	87339221	C	T	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				241	0	0	161	75	31.7797
ENSG00000230303	0	genome.wustl.edu	37	9	88401069	88401069	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	88401069	88401069	G	T	SNP	ENSG00000230303	ENST00000439544	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-213G2.2	Clone_based_vega_gene	ENSG00000230303				117	0	0	87	34	28.0992
GOLM1	0	genome.wustl.edu	37	9	88650485	88650485	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	88650485	88650485	C	T	SNP	GOLM1	ENST00000388711	human	ensembl	74_37	-1	known	silent	c.813	p.P271	0.000	NULL	NULL	-	no_errors	GOLM1	HGNC	ENSG00000135052				370	0	0	215	74	25.6055
ZCCHC6	0	genome.wustl.edu	37	9	88924147	88924147	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	88924147	88924147	A	C	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	missense	c.3640	p.F1214V	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223				25	0	0	38	20	34.4828
DAPK1	0	genome.wustl.edu	37	9	90264928	90264928	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	90264928	90264928	G	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	missense	c.1521	p.K507N	0.961	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				102	0	0	39	34	46.5753
SPATA31E1	0	genome.wustl.edu	37	9	90500035	90500035	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	90500035	90500035	G	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	silent	c.633	p.E211	0.001	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				227	0	0	114	45	28.3019
SPATA31E1	0	genome.wustl.edu	37	9	90501322	90501322	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	90501322	90501322	C	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	silent	c.1920	p.S640	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				130	0	0	47	20	29.8507
SPIN1	0	genome.wustl.edu	37	9	91041483	91041483	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	91041483	91041483	G	A	SNP	SPIN1	ENST00000375859	human	ensembl	74_37	+1	known	missense	c.29	p.G10D	1.000	NULL	pfam_Spin_Ssty	-	no_errors	SPIN1	HGNC	ENSG00000106723				43	0	0	29	20	40.8163
CKS2	0	genome.wustl.edu	37	9	91930195	91930195	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	91930195	91930195	A	G	SNP	CKS2	ENST00000314355	human	ensembl	74_37	+1	known	missense	c.170	p.Y57C	1.000	pfam_Cyclin-dep_kinase_reg-sub,superfamily_Cyclin-dep_kinase_reg-sub,prints_Cyclin-dep_kinase_reg-sub	pfam_Cyclin-dep_kinase_reg-sub,superfamily_Cyclin-dep_kinase_reg-sub,prints_Cyclin-dep_kinase_reg-sub	-	no_errors	CKS2	HGNC	ENSG00000123975				162	0	0	95	57	37.5
SEMA4D	0	genome.wustl.edu	37	9	91994492	91994492	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	91994492	91994492	C	T	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	silent	c.1716	p.A572	0.310	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				252	0	0	125	67	34.8958
NFIL3	0	genome.wustl.edu	37	9	94171887	94171887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	94171887	94171887	G	A	SNP	NFIL3	ENST00000297689	human	ensembl	74_37	-1	known	missense	c.1130	p.S377F	0.973	pfam_Vert_IL3-reg_TF,pirsf_TF_bZIP_E4BP4	pfam_Vert_IL3-reg_TF,pfam_bZIP,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	-	no_errors	NFIL3	HGNC	ENSG00000165030				263	0	0	152	74	32.7434
ROR2	0	genome.wustl.edu	37	9	94486891	94486891	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	94486891	94486891	C	T	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	missense	c.1885	p.V629M	0.980	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				153	0	0	58	33	36.2637
IARS	0	genome.wustl.edu	37	9	95025292	95025292	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	95025292	95025292	C	T	SNP	IARS	ENST00000375643	human	ensembl	74_37	-1	known	silent	c.1746	p.P582	0.005	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS	HGNC	ENSG00000196305				51	0	0	42	13	23.6364
OMD	0	genome.wustl.edu	37	9	95177490	95177490	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	95177490	95177490	C	A	SNP	OMD	ENST00000375550	human	ensembl	74_37	-1	known	nonsense	c.1210	p.E404*	0.862	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	OMD	HGNC	ENSG00000127083				88	0	0	51	26	33.7662
ASPN	0	genome.wustl.edu	37	9	95222031	95222031	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	95222031	95222031	T	G	SNP	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	missense	c.828	p.K276N	1.000	smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819				45	0	0	19	9	32.1429
ECM2	0	genome.wustl.edu	37	9	95263202	95263202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	95263202	95263202	C	T	SNP	ECM2	ENST00000344604	human	ensembl	74_37	-1	known	missense	c.1738	p.E580K	0.965	NULL	pfam_Leu-rich_rpt,pfam_VWF_C,smart_VWF_C,smart_Leu-rich_rpt_typical-subtyp,pfscan_VWF_C	-	no_errors	ECM2	HGNC	ENSG00000106823				152	0	0	97	43	30.7143
FGD3	0	genome.wustl.edu	37	9	95738699	95738699	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	95738699	95738699	A	G	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	missense	c.161	p.D54G	0.002	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				28	0	0	13	7	35
ZNF169	0	genome.wustl.edu	37	9	97062108	97062108	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	97062108	97062108	G	T	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	nonsense	c.268	p.E90*	0.926	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				87	0	0	67	22	24.7191
HIATL1	0	genome.wustl.edu	37	9	97209126	97209126	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	97209126	97209126	G	T	SNP	HIATL1	ENST00000375344	human	ensembl	74_37	+1	known	missense	c.751	p.D251Y	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Tet-R_TetA/multi-R_MdtG	-	no_errors	HIATL1	HGNC	ENSG00000148110				108	0	0	61	25	29.0698
CDC14B	0	genome.wustl.edu	37	9	99271994	99271994	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	99271994	99271994	C	A	SNP	CDC14B	ENST00000375241	human	ensembl	74_37	-1	known	missense	c.1421	p.R474I	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377				113	0	0	58	31	34.8315
CDC14B	0	genome.wustl.edu	37	9	99285665	99285665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	99285665	99285665	G	A	SNP	CDC14B	ENST00000375241	human	ensembl	74_37	-1	known	missense	c.1123	p.R375C	0.993	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377				203	0	0	100	51	33.7748
ZNF510	0	genome.wustl.edu	37	9	99521253	99521253	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	99521253	99521253	C	A	SNP	ZNF510	ENST00000223428	human	ensembl	74_37	-1	known	missense	c.1859	p.R620I	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF510	HGNC	ENSG00000081386				139	0	0	102	48	32
ZNF782	0	genome.wustl.edu	37	9	99580766	99580766	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	99580766	99580766	T	G	SNP	ZNF782	ENST00000481138	human	ensembl	74_37	-1	known	missense	c.1539	p.K513N	0.348	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597				251	0	0	138	101	42.2594
ZNF782	0	genome.wustl.edu	37	9	99581316	99581316	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	9	99581316	99581316	C	A	SNP	ZNF782	ENST00000481138	human	ensembl	74_37	-1	known	missense	c.989	p.R330I	0.962	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF782	HGNC	ENSG00000196597				244	0	0	164	62	27.4336
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117378	117378	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	GL000205.1	117378	117378	G	T	SNP	ENSG00000212884	ENST00000391571	human	ensembl	74_37	+1	known	missense	c.9	p.E3D	NULL	pfam_D-isomer_2_OHA_DH_cat_dom	pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	AC011841.1	Clone_based_ensembl_gene	ENSG00000212884				103	0	0	49	6	10.9091
DRP2	0	genome.wustl.edu	37	X	100494085	100494085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	100494085	100494085	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.554	p.S185N	0.993	smart_Spectrin/alpha-actinin,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				103	0	0	19	76	80
NXF5	0	genome.wustl.edu	37	X	101096040	101096040	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101096040	101096040	C	T	SNP	NXF5	ENST00000263032	human	ensembl	74_37	-1	known	missense	c.428	p.R143Q	0.998	NULL	pfam_Tap_RNA-bd	-	no_errors	NXF5	HGNC	ENSG00000126952				111	0	0	39	106	73.1034
TCEAL2	0	genome.wustl.edu	37	X	101381919	101381919	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101381919	101381919	G	T	SNP	TCEAL2	ENST00000329035	human	ensembl	74_37	+1	known	missense	c.117	p.K39N	0.000	NULL	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL2	HGNC	ENSG00000184905				30	0	0	15	35	70
TCEAL6	0	genome.wustl.edu	37	X	101396254	101396254	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101396254	101396254	T	G	SNP	TCEAL6	ENST00000372773	human	ensembl	74_37	-1	known	missense	c.50	p.K17T	0.008	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL6	HGNC	ENSG00000204071				25	0	0	10	42	80.7692
NXF2B	0	genome.wustl.edu	37	X	101624960	101624960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101624960	101624960	G	A	SNP	NXF2B	ENST00000372749	human	ensembl	74_37	-1	known	missense	c.157	p.R53C	0.000	NULL	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2B	HGNC	ENSG00000185945				14	0	0	12	9	42.8571
GPRASP1	0	genome.wustl.edu	37	X	101911263	101911263	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101911263	101911263	G	T	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	nonsense	c.2422	p.E808*	0.005	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				114	0	0	36	118	76.6234
BHLHB9	0	genome.wustl.edu	37	X	102005180	102005180	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	102005180	102005180	A	G	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	silent	c.1257	p.S419	0.995	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				82	0	0	17	92	84.4037
TCEAL1	0	genome.wustl.edu	37	X	102885266	102885266	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	102885266	102885266	G	T	SNP	TCEAL1	ENST00000372624	human	ensembl	74_37	+1	known	missense	c.422	p.R141I	0.979	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL1	HGNC	ENSG00000172465				30	0	0	11	33	75
GLRA4	0	genome.wustl.edu	37	X	102962423	102962423	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	102962423	102962423	T	C	SNP	GLRA4	ENST00000372617	human	ensembl	74_37	-1	known	missense	c.1103	p.E368G	1.000	superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA4	HGNC	ENSG00000188828				59	0	0	50	29	36.7089
ZCCHC18	0	genome.wustl.edu	37	X	103359829	103359829	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	103359829	103359829	C	T	SNP	ZCCHC18	ENST00000537356	human	ensembl	74_37	+1	putative	nonsense	c.1027	p.R343*	0.029	superfamily_Znf_CCHC	superfamily_Znf_CCHC	-	no_errors	ZCCHC18	HGNC	ENSG00000166707				13	0	0	4	16	80
IL1RAPL2	0	genome.wustl.edu	37	X	105011054	105011054	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	105011054	105011054	C	T	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	silent	c.1461	p.F487	0.995	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				87	0	0	27	98	78.4
MUM1L1	0	genome.wustl.edu	37	X	105449594	105449594	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	105449594	105449594	A	G	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.169	p.I57V	0.014	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502				24	0	0	0	16	100
FRMPD3	0	genome.wustl.edu	37	X	106803505	106803505	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	106803505	106803505	C	T	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	nonsense	c.880	p.R294*	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				87	0	0	69	40	36.6972
IRS4	0	genome.wustl.edu	37	X	107976445	107976445	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	107976445	107976445	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	nonsense	c.3130	p.R1044*	1.000	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				87	0	0	20	103	83.7398
IRS4	0	genome.wustl.edu	37	X	107978696	107978696	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	107978696	107978696	G	T	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.879	p.F293L	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				120	0	0	38	114	75
GUCY2F	0	genome.wustl.edu	37	X	108638569	108638569	+	Splice_Site	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	108638569	108638569	C	T	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	splice_site	c.2424+1	e11+1	1.000	-	-	-	no_errors	GUCY2F	HGNC	ENSG00000101890				63	0	0	26	41	61.194
GUCY2F	0	genome.wustl.edu	37	X	108638641	108638641	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	108638641	108638641	G	T	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	missense	c.2353	p.L785I	0.998	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				123	0	0	32	133	80.6061
RGAG1	0	genome.wustl.edu	37	X	109696171	109696171	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	109696171	109696171	G	T	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.2326	p.D776Y	0.000	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				69	0	0	17	100	85.4701
PAK3	0	genome.wustl.edu	37	X	110385348	110385348	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	110385348	110385348	G	A	SNP	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	missense	c.200	p.R67H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				88	0	0	30	100	76.9231
PAK3	0	genome.wustl.edu	37	X	110406810	110406810	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	110406810	110406810	T	G	SNP	PAK3	ENST00000360648	human	ensembl	74_37	+1	known	silent	c.729	p.V243	0.996	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK3	HGNC	ENSG00000077264				57	0	0	34	87	71.9008
ALG13	0	genome.wustl.edu	37	X	110928252	110928252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	110928252	110928252	G	A	SNP	ALG13	ENST00000371979	human	ensembl	74_37	+1	known	missense	c.304	p.E102K	1.000	pfam_Glyco_trans_28_C	pfam_Glyco_trans_28_C	-	no_errors	ALG13	HGNC	ENSG00000101901				231	0	0	67	287	81.0734
ALG13	0	genome.wustl.edu	37	X	110988113	110988113	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	110988113	110988113	C	T	SNP	ALG13	ENST00000394780	human	ensembl	74_37	+1	putative	silent	c.2913	p.S971	0.994	NULL	pfam_Glyco_trans_28_C,pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901				16	0	0	9	20	68.9655
ALG13	0	genome.wustl.edu	37	X	111000794	111000794	+	RNA	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	111000794	111000794	T	G	SNP	ALG13	ENST00000487243	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ALG13	HGNC	ENSG00000101901				15	0	0	10	18	64.2857
TRPC5	0	genome.wustl.edu	37	X	111155848	111155848	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	111155848	111155848	G	A	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				119	0	0	23	102	81.6
HTR2C	0	genome.wustl.edu	37	X	114082759	114082759	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	114082759	114082759	T	G	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	missense	c.543	p.I181M	0.994	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				53	0	0	16	49	75.3846
LRCH2	0	genome.wustl.edu	37	X	114357648	114357648	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	114357648	114357648	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	missense	c.1957	p.R653C	1.000	superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224				8	0	0	3	28	90.3226
AGTR2	0	genome.wustl.edu	37	X	115304594	115304594	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	115304594	115304594	C	A	SNP	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	missense	c.1061	p.S354Y	0.574	prints_ATII_AT2_rcpt	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772				85	0	0	24	94	79.661
MSL3	0	genome.wustl.edu	37	X	11778982	11778982	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	11778982	11778982	G	A	SNP	MSL3	ENST00000312196	human	ensembl	74_37	+1	known	missense	c.308	p.R103H	1.000	superfamily_Chromodomain-like	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				13	0	0	5	10	66.6667
DOCK11	0	genome.wustl.edu	37	X	117805097	117805097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	117805097	117805097	C	T	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.5188	p.R1730C	0.988	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251				33	0	0	19	63	76.8293
LONRF3	0	genome.wustl.edu	37	X	118108896	118108896	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	118108896	118108896	G	A	SNP	LONRF3	ENST00000371628	human	ensembl	74_37	+1	known	silent	c.153	p.T51	0.003	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF3	HGNC	ENSG00000175556				13	0	0	2	4	66.6667
KIAA1210	0	genome.wustl.edu	37	X	118230472	118230472	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	118230472	118230472	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.1251	p.K417N	0.015	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				32	0	0	13	40	75.4717
CUL4B	0	genome.wustl.edu	37	X	119673163	119673163	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	119673163	119673163	T	G	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.1755	p.K585N	1.000	pfam_Cullin_N,superfamily_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				10	0	0	4	15	78.9474
CUL4B	0	genome.wustl.edu	37	X	119694325	119694325	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	119694325	119694325	C	A	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.223	p.D75Y	1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				49	0	0	20	45	69.2308
C1GALT1C1	0	genome.wustl.edu	37	X	119760099	119760099	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	119760099	119760099	A	G	SNP	C1GALT1C1	ENST00000304661	human	ensembl	74_37	-1	known	missense	c.923	p.V308A	0.856	NULL	NULL	-	no_errors	C1GALT1C1	HGNC	ENSG00000171155				63	0	0	22	107	82.9457
XIAP	0	genome.wustl.edu	37	X	123020225	123020225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123020225	123020225	G	A	SNP	XIAP	ENST00000355640	human	ensembl	74_37	+1	known	missense	c.713	p.R238Q	0.164	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966				88	0	0	24	108	81.8182
STAG2	0	genome.wustl.edu	37	X	123171427	123171427	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123171427	123171427	A	C	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	silent	c.339	p.A113	0.946	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				84	0	0	25	112	81.7518
STAG2	0	genome.wustl.edu	37	X	123202434	123202434	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123202434	123202434	G	A	SNP	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	silent	c.2286	p.K762	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				42	0	0	14	66	82.5
TENM1	0	genome.wustl.edu	37	X	123517913	123517913	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123517913	123517913	A	C	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.6868	p.L2290V	0.982	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				112	0	0	49	173	77.9279
TENM1	0	genome.wustl.edu	37	X	123538903	123538903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123538903	123538903	G	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5369	p.S1790L	0.970	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				82	0	0	27	95	77.8689
TENM1	0	genome.wustl.edu	37	X	123657246	123657246	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123657246	123657246	G	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.3001	p.P1001S	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				82	0	0	15	77	83.6957
TENM1	0	genome.wustl.edu	37	X	123870961	123870961	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	123870961	123870961	T	G	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.622	p.K208Q	1.000	pfam_Ten_N	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				80	0	0	16	85	84.1584
FRMPD4	0	genome.wustl.edu	37	X	12701697	12701697	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	12701697	12701697	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	silent	c.564	p.G188	1.000	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933				41	0	0	7	22	75.8621
ACTRT1	0	genome.wustl.edu	37	X	127186142	127186142	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	127186142	127186142	T	C	SNP	ACTRT1	ENST00000371124	human	ensembl	74_37	-1	known	missense	c.44	p.D15G	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTRT1	HGNC	ENSG00000123165				80	0	0	26	83	76.1468
SMARCA1	0	genome.wustl.edu	37	X	128599549	128599549	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	128599549	128599549	C	T	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.2978	p.R993Q	1.000	pfam_SLIDE,superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				67	0	0	33	122	78.7097
SMARCA1	0	genome.wustl.edu	37	X	128599864	128599864	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	128599864	128599864	C	T	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.2774	p.R925K	1.000	pfam_SLIDE,superfamily_Homeodomain-like	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038				96	0	0	33	111	77.0833
SASH3	0	genome.wustl.edu	37	X	128926655	128926655	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	128926655	128926655	G	A	SNP	SASH3	ENST00000356892	human	ensembl	74_37	+1	known	missense	c.644	p.G215D	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH3	HGNC	ENSG00000122122				120	0	0	28	73	72.2772
TLR7	0	genome.wustl.edu	37	X	12905084	12905084	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	12905084	12905084	C	A	SNP	TLR7	ENST00000380659	human	ensembl	74_37	+1	known	missense	c.1457	p.S486Y	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR7	HGNC	ENSG00000196664				135	0	0	30	76	71.6981
TLR8	0	genome.wustl.edu	37	X	12937551	12937551	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	12937551	12937551	T	C	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.392	p.L131P	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				107	0	0	23	78	77.2277
TLR8	0	genome.wustl.edu	37	X	12940036	12940036	+	Silent	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	12940036	12940036	T	G	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	silent	c.2877	p.A959	0.747	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				69	0	0	21	41	66.129
USP26	0	genome.wustl.edu	37	X	132159805	132159805	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	132159805	132159805	C	A	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	missense	c.2444	p.R815I	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				63	0	0	21	91	81.25
CCDC160	0	genome.wustl.edu	37	X	133379644	133379644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	133379644	133379644	G	A	SNP	CCDC160	ENST00000370809	human	ensembl	74_37	+1	known	missense	c.814	p.A272T	0.116	NULL	NULL	-	no_errors	CCDC160	HGNC	ENSG00000203952				23	0	0	3	29	90.625
MIR450A1	0	genome.wustl.edu	37	X	133674439	133674439	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	133674439	133674439	G	A	SNP	MIR450A1	ENST00000362262	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	MIR450A1	HGNC	ENSG00000199132				43	0	0	10	41	80.3922
CXorf48	0	genome.wustl.edu	37	X	134303569	134303569	+	Silent	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	134303569	134303569	A	C	SNP	CXorf48	ENST00000276241	human	ensembl	74_37	-1	known	silent	c.228	p.V76	0.000	superfamily_NA-bd_OB-fold	superfamily_NA-bd_OB-fold	-	no_errors	CXorf48	HGNC	ENSG00000169551				40	0	0	13	28	68.2927
SAGE1	0	genome.wustl.edu	37	X	134991090	134991090	+	Silent	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	134991090	134991090	C	A	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	silent	c.1509	p.V503	0.003	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				82	0	0	26	90	77.5862
SAGE1	0	genome.wustl.edu	37	X	134993842	134993842	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	134993842	134993842	A	G	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	missense	c.2251	p.T751A	0.000	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				163	0	0	50	172	77.4775
SAGE1	0	genome.wustl.edu	37	X	134994097	134994097	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	134994097	134994097	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	nonsense	c.2506	p.R836*	0.993	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				56	0	0	23	59	71.9512
MAP7D3	0	genome.wustl.edu	37	X	135303041	135303041	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135303041	135303041	A	C	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	missense	c.2315	p.F772C	0.001	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				226	0	0	64	248	79.4872
GPR112	0	genome.wustl.edu	37	X	135431650	135431650	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135431650	135431650	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.5785	p.L1929	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				114	0	0	28	132	82.5
GPR112	0	genome.wustl.edu	37	X	135432563	135432563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135432563	135432563	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.6698	p.S2233L	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				76	0	0	10	67	87.013
GPR112	0	genome.wustl.edu	37	X	135443643	135443643	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135443643	135443643	G	A	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.7174	p.A2392T	0.164	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				49	0	0	15	49	76.5625
CD40LG	0	genome.wustl.edu	37	X	135741442	135741442	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135741442	135741442	C	T	SNP	CD40LG	ENST00000370629	human	ensembl	74_37	+1	known	silent	c.654	p.C218	0.002	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_5,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_5,pfscan_TNF_dom,prints_TNF_ligand_5	-	no_errors	CD40LG	HGNC	ENSG00000102245				210	0	0	71	214	75.0877
ARHGEF6	0	genome.wustl.edu	37	X	135754267	135754267	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	135754267	135754267	C	A	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.2047	p.D683Y	1.000	NULL	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675				117	0	0	27	108	80
GPR101	0	genome.wustl.edu	37	X	136113696	136113696	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	136113696	136113696	G	A	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	silent	c.138	p.F46	0.007	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370				85	0	0	23	84	78.5047
MCF2	0	genome.wustl.edu	37	X	138689852	138689852	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	138689852	138689852	C	A	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	missense	c.1923	p.K641N	1.000	superfamily_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				40	0	0	46	10	17.8571
MAGEC3	0	genome.wustl.edu	37	X	140967039	140967039	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	140967039	140967039	T	G	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.337	p.S113A	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				22	0	0	9	8	47.0588
MAGEC1	0	genome.wustl.edu	37	X	140996572	140996572	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	140996572	140996572	G	T	SNP	MAGEC1	ENST00000285879	human	ensembl	74_37	+1	known	nonsense	c.3382	p.E1128*	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495				80	0	0	77	13	14.4444
RNA5SP498	0	genome.wustl.edu	37	X	1419221	1419221	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	1419221	1419221	C	T	SNP	RNA5SP498	ENST00000411342	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.081	-	-	-	no_errors	RNA5SP498	HGNC	ENSG00000223274				8	0	0	7	4	36.3636
SLITRK4	0	genome.wustl.edu	37	X	142718309	142718309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	142718309	142718309	C	T	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.616	p.V206I	0.816	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				87	0	0	78	36	31.5789
SPANXN2	0	genome.wustl.edu	37	X	142795585	142795585	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	142795585	142795585	C	T	SNP	SPANXN2	ENST00000370498	human	ensembl	74_37	-1	known	silent	c.93	p.P31	0.000	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924				55	0	0	14	60	81.0811
FMR1NB	0	genome.wustl.edu	37	X	147106456	147106456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	147106456	147106456	G	A	SNP	FMR1NB	ENST00000370467	human	ensembl	74_37	+1	known	missense	c.704	p.R235Q	0.000	NULL	superfamily_P_trefoil	-	no_errors	FMR1NB	HGNC	ENSG00000176988				54	0	0	22	68	75.5556
AFF2	0	genome.wustl.edu	37	X	147743734	147743734	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	147743734	147743734	T	C	SNP	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	silent	c.486	p.D162	0.983	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				150	0	0	42	167	79.9043
MAGEA11	0	genome.wustl.edu	37	X	148797493	148797493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	148797493	148797493	G	A	SNP	MAGEA11	ENST00000355220	human	ensembl	74_37	+1	known	missense	c.347	p.R116K	0.001	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA11	HGNC	ENSG00000185247				110	0	0	17	89	83.9623
PASD1	0	genome.wustl.edu	37	X	150840971	150840971	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	150840971	150840971	T	C	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.1754	p.I585T	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				60	0	0	106	37	25.8741
FATE1	0	genome.wustl.edu	37	X	150891227	150891227	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	150891227	150891227	A	C	SNP	FATE1	ENST00000370350	human	ensembl	74_37	+1	known	missense	c.548	p.Q183P	0.437	NULL	pfam_FATE/Miff/Tango-11	-	no_errors	FATE1	HGNC	ENSG00000147378				59	0	0	37	40	51.9481
GABRQ	0	genome.wustl.edu	37	X	151820165	151820165	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	151820165	151820165	C	T	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	missense	c.1078	p.R360C	0.008	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				79	0	0	20	144	87.8049
ASB9	0	genome.wustl.edu	37	X	15267048	15267048	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	15267048	15267048	A	G	SNP	ASB9	ENST00000380488	human	ensembl	74_37	-1	known	missense	c.578	p.V193A	0.086	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB9	HGNC	ENSG00000102048				66	0	0	21	22	51.1628
ATP2B3	0	genome.wustl.edu	37	X	152815144	152815144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	152815144	152815144	G	A	SNP	ATP2B3	ENST00000263519	human	ensembl	74_37	+1	known	missense	c.1528	p.D510N	0.999	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B3	HGNC	ENSG00000067842				78	0	0	58	76	56.7164
ABCD1	0	genome.wustl.edu	37	X	153001668	153001668	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153001668	153001668	C	T	SNP	ABCD1	ENST00000218104	human	ensembl	74_37	+1	known	missense	c.1184	p.A395V	0.940	superfamily_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD1	HGNC	ENSG00000101986				123	0	0	24	124	83.7838
SRPK3	0	genome.wustl.edu	37	X	153046776	153046776	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153046776	153046776	G	T	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	missense	c.165	p.Q55H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				33	0	0	47	10	17.5439
SRPK3	0	genome.wustl.edu	37	X	153049822	153049822	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153049822	153049822	C	T	SNP	SRPK3	ENST00000370101	human	ensembl	74_37	+1	known	silent	c.1221	p.I407	0.402	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SRPK3	HGNC	ENSG00000184343				41	0	0	8	47	85.4545
L1CAM	0	genome.wustl.edu	37	X	153133495	153133495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153133495	153133495	C	T	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.1792	p.E598K	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				96	0	0	22	126	85.1351
AVPR2	0	genome.wustl.edu	37	X	153171980	153171980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153171980	153171980	C	T	SNP	AVPR2	ENST00000337474	human	ensembl	74_37	+1	known	missense	c.914	p.A305V	0.417	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Vprsn_rcpt_V2,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR2	HGNC	ENSG00000126895				183	0	0	48	206	81.1024
HCFC1	0	genome.wustl.edu	37	X	153228874	153228874	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153228874	153228874	C	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.514	p.D172Y	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				33	0	0	28	36	56.25
ASB11	0	genome.wustl.edu	37	X	15333600	15333600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	15333600	15333600	C	T	SNP	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	missense	c.128	p.G43E	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				58	0	0	18	36	66.6667
OPN1LW	0	genome.wustl.edu	37	X	153416361	153416361	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153416361	153416361	T	G	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	missense	c.346	p.S116A	0.938	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				119	0	0	144	42	22.5806
TKTL1	0	genome.wustl.edu	37	X	153549110	153549110	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153549110	153549110	G	A	SNP	TKTL1	ENST00000369915	human	ensembl	74_37	+1	known	missense	c.1036	p.V346M	1.000	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL1	HGNC	ENSG00000007350				107	0	0	87	99	53.2258
PLXNA3	0	genome.wustl.edu	37	X	153693557	153693557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153693557	153693557	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.2240	p.A747V	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				20	0	0	18	9	33.3333
GAB3	0	genome.wustl.edu	37	X	153944425	153944425	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153944425	153944425	G	A	SNP	GAB3	ENST00000424127	human	ensembl	74_37	-1	known	silent	c.252	p.F84	0.403	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB3	HGNC	ENSG00000160219				161	0	0	37	234	86.3469
DKC1	0	genome.wustl.edu	37	X	153993212	153993212	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153993212	153993212	C	T	SNP	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	missense	c.55	p.R19W	0.016	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				91	0	0	19	160	89.3855
DKC1	0	genome.wustl.edu	37	X	153995639	153995639	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	153995639	153995639	G	A	SNP	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	missense	c.622	p.D208N	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_PsdUridine_synth_B_fam	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				122	0	0	182	74	28.9062
F8	0	genome.wustl.edu	37	X	154185408	154185408	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	154185408	154185408	C	A	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	nonsense	c.1576	p.E526*	0.998	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				100	0	0	169	52	23.5294
F8	0	genome.wustl.edu	37	X	154194944	154194944	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	154194944	154194944	A	G	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.1028	p.V343A	0.988	superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				73	0	0	17	123	87.8571
PIR	0	genome.wustl.edu	37	X	15474167	15474167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	15474167	15474167	G	A	SNP	PIR	ENST00000380420	human	ensembl	74_37	-1	known	missense	c.284	p.A95V	0.997	pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	pfam_Pirin_C_dom,pfam_Pirin_N_dom,superfamily_RmlC_Cupin,pirsf_Pirin	-	no_errors	PIR	HGNC	ENSG00000087842				173	1	0.574713	44	99	69.2308
IL9R	0	genome.wustl.edu	37	X	155239771	155239771	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	155239771	155239771	G	A	SNP	IL9R	ENST00000244174	human	ensembl	74_37	+1	known	silent	c.1263	p.P421	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	IL9R	HGNC	ENSG00000124334				59	0	0	25	3	10.7143
GRPR	0	genome.wustl.edu	37	X	16170750	16170750	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	16170750	16170750	T	C	SNP	GRPR	ENST00000380289	human	ensembl	74_37	+1	known	silent	c.1137	p.C379	0.996	prints_Gastrin_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010				180	0	0	56	79	58.5185
ASMT	0	genome.wustl.edu	37	X	1742126	1742126	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	1742126	1742126	C	T	SNP	ASMT	ENST00000381241	human	ensembl	74_37	+1	known	missense	c.164	p.A55V	0.061	pirsf_COMT	pfam_O_MeTrfase_2,pirsf_COMT	-	no_errors	ASMT	HGNC	ENSG00000196433				64	0	0	35	14	28.5714
ASMT	0	genome.wustl.edu	37	X	1755266	1755266	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	1755266	1755266	G	T	SNP	ASMT	ENST00000509780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ASMT	HGNC	ENSG00000196433				147	0	0	68	40	37.037
NHS	0	genome.wustl.edu	37	X	17745600	17745600	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	17745600	17745600	C	T	SNP	NHS	ENST00000380060	human	ensembl	74_37	+1	known	missense	c.3311	p.S1104L	0.080	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158				113	1	0.877193	34	70	67.3077
PHKA2	0	genome.wustl.edu	37	X	18938281	18938281	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	18938281	18938281	G	A	SNP	PHKA2	ENST00000379942	human	ensembl	74_37	-1	known	missense	c.1832	p.S611L	0.993	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA2	HGNC	ENSG00000044446				65	0	0	24	63	72.4138
MAP3K15	0	genome.wustl.edu	37	X	19410570	19410570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	19410570	19410570	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	missense	c.2216	p.R739Q	0.934	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				122	0	0	17	61	78.2051
SH3KBP1	0	genome.wustl.edu	37	X	19626054	19626054	+	Splice_Site	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	19626054	19626054	A	C	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	splice_site	c.1005+2	e9+2	1.000	-	-	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				40	0	0	9	24	72.7273
RPS6KA3	0	genome.wustl.edu	37	X	20195149	20195149	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	20195149	20195149	C	T	SNP	RPS6KA3	ENST00000379565	human	ensembl	74_37	-1	known	missense	c.899	p.R300Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA3	HGNC	ENSG00000177189				69	0	0	25	43	63.2353
DHRSX	0	genome.wustl.edu	37	X	2139159	2139159	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	2139159	2139159	T	C	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	missense	c.916	p.T306A	0.815	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084				174	0	0	64	44	40.7407
DDX53	0	genome.wustl.edu	37	X	23019630	23019630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	23019630	23019630	G	A	SNP	DDX53	ENST00000327968	human	ensembl	74_37	+1	known	missense	c.1456	p.D486N	0.932	superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735				76	0	0	22	46	67.6471
DHRSX	0	genome.wustl.edu	37	X	2326792	2326792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	2326792	2326792	C	T	SNP	DHRSX	ENST00000334651	human	ensembl	74_37	-1	known	missense	c.280	p.D94N	0.010	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRSX	HGNC	ENSG00000169084				30	0	0	25	8	24.2424
PTCHD1	0	genome.wustl.edu	37	X	23397823	23397823	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	23397823	23397823	T	C	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.467	p.V156A	0.991	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				85	0	0	22	50	69.4444
PTCHD1	0	genome.wustl.edu	37	X	23411641	23411641	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	23411641	23411641	G	T	SNP	PTCHD1	ENST00000379361	human	ensembl	74_37	+1	known	missense	c.2006	p.R669M	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186				74	0	0	24	32	57.1429
CXorf58	0	genome.wustl.edu	37	X	23928489	23928489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	23928489	23928489	C	T	SNP	CXorf58	ENST00000379211	human	ensembl	74_37	+1	known	missense	c.70	p.R24C	0.000	NULL	NULL	-	no_errors	CXorf58	HGNC	ENSG00000165182				41	0	0	14	96	87.2727
POLA1	0	genome.wustl.edu	37	X	24751894	24751894	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	24751894	24751894	T	C	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	silent	c.1794	p.C598	0.998	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				40	0	0	6	53	89.8305
POLA1	0	genome.wustl.edu	37	X	24751916	24751916	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	24751916	24751916	G	T	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	nonsense	c.1816	p.E606*	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				38	0	0	32	25	43.8596
MAGEB2	0	genome.wustl.edu	37	X	30237408	30237408	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	30237408	30237408	G	T	SNP	MAGEB2	ENST00000378988	human	ensembl	74_37	+1	known	missense	c.711	p.E237D	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399				28	0	0	29	21	42
DMD	0	genome.wustl.edu	37	X	31164479	31164479	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	31164479	31164479	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.10850	p.S3617Y	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				43	0	0	41	20	32.7869
DMD	0	genome.wustl.edu	37	X	32235105	32235105	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	32235105	32235105	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6366	p.E2122D	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				20	0	0	6	28	82.3529
DMD	0	genome.wustl.edu	37	X	32328264	32328264	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	32328264	32328264	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.6052	p.L2018I	0.708	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				67	0	0	63	32	33.6842
MXRA5	0	genome.wustl.edu	37	X	3239545	3239545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	3239545	3239545	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.4181	p.G1394D	0.029	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				23	0	0	17	3	15
CXorf22	0	genome.wustl.edu	37	X	36007570	36007570	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	36007570	36007570	A	C	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.2848	p.I950L	0.981	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				33	0	0	25	24	48.9796
XK	0	genome.wustl.edu	37	X	37545370	37545370	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	37545370	37545370	G	A	SNP	XK	ENST00000378616	human	ensembl	74_37	+1	known	silent	c.156	p.Q52	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				27	0	0	5	23	82.1429
CYBB	0	genome.wustl.edu	37	X	37665699	37665699	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	37665699	37665699	G	A	SNP	CYBB	ENST00000378588	human	ensembl	74_37	+1	known	silent	c.1374	p.L458	1.000	pfam_Fe_red_NAD-bd_6	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	CYBB	HGNC	ENSG00000165168				74	0	0	48	35	42.1687
SYTL5	0	genome.wustl.edu	37	X	37984742	37984742	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	37984742	37984742	G	A	SNP	SYTL5	ENST00000456733	human	ensembl	74_37	+1	known	missense	c.2099	p.R700H	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ	-	no_errors	SYTL5	HGNC	ENSG00000147041				53	0	0	58	35	37.6344
RPGR	0	genome.wustl.edu	37	X	38158349	38158349	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	38158349	38158349	G	A	SNP	RPGR	ENST00000378505	human	ensembl	74_37	-1	known	missense	c.1105	p.R369C	0.001	NULL	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313				29	0	0	24	15	38.4615
USP9X	0	genome.wustl.edu	37	X	41000424	41000424	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	41000424	41000424	G	T	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	nonsense	c.976	p.E326*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				11	0	0	20	16	44.4444
GPR82	0	genome.wustl.edu	37	X	41587118	41587118	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	41587118	41587118	A	C	SNP	GPR82	ENST00000302548	human	ensembl	74_37	+1	known	missense	c.839	p.N280T	0.314	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR82	HGNC	ENSG00000171657				34	0	0	72	6	7.69231
MIR221	0	genome.wustl.edu	37	X	45605641	45605641	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	45605641	45605641	G	A	SNP	MIR221	ENST00000385135	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	MIR221	HGNC	ENSG00000207870				31	0	0	28	12	30
RBM10	0	genome.wustl.edu	37	X	47041358	47041358	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47041358	47041358	G	A	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.1702	p.D568N	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				43	0	0	31	20	39.2157
RBM10	0	genome.wustl.edu	37	X	47044457	47044457	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47044457	47044457	G	A	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.1954	p.A652T	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872				19	0	0	7	6	46.1538
UBA1	0	genome.wustl.edu	37	X	47065665	47065665	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47065665	47065665	G	A	SNP	UBA1	ENST00000335972	human	ensembl	74_37	+1	known	missense	c.1760	p.R587H	1.000	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_Ub-activating_enz_e1_C,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA1	HGNC	ENSG00000130985				21	0	0	12	20	62.5
ZNF157	0	genome.wustl.edu	37	X	47272103	47272103	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47272103	47272103	A	G	SNP	ZNF157	ENST00000377073	human	ensembl	74_37	+1	known	missense	c.631	p.T211A	0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF157	HGNC	ENSG00000147117				58	0	0	19	59	75.641
ZNF41	0	genome.wustl.edu	37	X	47308810	47308810	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47308810	47308810	C	A	SNP	ZNF41	ENST00000397050	human	ensembl	74_37	-1	known	missense	c.389	p.R130I	0.998	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124				28	0	0	19	14	42.4242
SYN1	0	genome.wustl.edu	37	X	47464761	47464761	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47464761	47464761	A	C	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	missense	c.545	p.F182C	1.000	pfam_Synapsin_pre-ATP-grasp_dom,superfamily_PreATP-grasp_dom,prints_Synapsin	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				26	0	0	30	4	11.7647
ELK1	0	genome.wustl.edu	37	X	47500810	47500810	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47500810	47500810	G	A	SNP	ELK1	ENST00000247161	human	ensembl	74_37	-1	known	silent	c.31	p.L11	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK1	HGNC	ENSG00000126767				28	0	0	8	32	80
ZNF630	0	genome.wustl.edu	37	X	47919043	47919043	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	47919043	47919043	T	G	SNP	ZNF630	ENST00000409324	human	ensembl	74_37	-1	known	missense	c.788	p.N263T	0.750	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF630	HGNC	ENSG00000221994				84	0	0	103	24	18.8976
GLOD5	0	genome.wustl.edu	37	X	48632033	48632033	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48632033	48632033	T	C	SNP	GLOD5	ENST00000470676	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GLOD5	HGNC	ENSG00000171433				8	0	0	5	6	54.5455
PQBP1	0	genome.wustl.edu	37	X	48760018	48760018	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48760018	48760018	G	A	SNP	PQBP1	ENST00000218224	human	ensembl	74_37	+1	known	missense	c.587	p.R196Q	1.000	NULL	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PQBP1	HGNC	ENSG00000102103				14	0	0	9	13	59.0909
PIM2	0	genome.wustl.edu	37	X	48772563	48772563	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48772563	48772563	T	G	SNP	PIM2	ENST00000376509	human	ensembl	74_37	-1	known	missense	c.329	p.E110A	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PIM2	HGNC	ENSG00000102096				25	0	0	8	12	60
OTUD5	0	genome.wustl.edu	37	X	48791968	48791968	+	Splice_Site	SNP	C	C	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48791968	48791968	C	G	SNP	OTUD5	ENST00000156084	human	ensembl	74_37	-1	known	splice_site	c.925+1	e4+1	0.595	-	-	-	no_errors	OTUD5	HGNC	ENSG00000068308				111	0	0	69	42	37.8378
OTUD5	0	genome.wustl.edu	37	X	48792100	48792100	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48792100	48792100	T	C	SNP	OTUD5	ENST00000156084	human	ensembl	74_37	-1	known	missense	c.794	p.D265G	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	OTUD5	HGNC	ENSG00000068308				215	0	0	154	88	36.3636
KCND1	0	genome.wustl.edu	37	X	48825826	48825826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	48825826	48825826	C	T	SNP	KCND1	ENST00000218176	human	ensembl	74_37	-1	known	missense	c.853	p.D285N	1.000	pfam_Ion_trans_dom	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND1	HGNC	ENSG00000102057				22	0	0	5	13	72.2222
CACNA1F	0	genome.wustl.edu	37	X	49081339	49081339	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	49081339	49081339	G	T	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	nonsense	c.1794	p.C598*	0.999	pfam_Ion_trans_dom,prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				24	0	0	5	10	66.6667
CCNB3	0	genome.wustl.edu	37	X	50028141	50028141	+	RNA	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	50028141	50028141	A	C	SNP	CCNB3	ENST00000491907	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.236	-	-	-	no_errors	CCNB3	HGNC	ENSG00000147082				43	0	0	16	18	52.9412
CCNB3	0	genome.wustl.edu	37	X	50052637	50052637	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	50052637	50052637	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.1468	p.I490L	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				31	0	0	11	29	72.5
CCNB3	0	genome.wustl.edu	37	X	50055601	50055601	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	50055601	50055601	A	C	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.3392	p.K1131T	1.000	superfamily_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				87	0	0	19	52	73.2394
SHROOM4	0	genome.wustl.edu	37	X	50377847	50377847	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	50377847	50377847	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.1226	p.R409H	1.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				23	0	0	9	13	59.0909
MAGED1	0	genome.wustl.edu	37	X	51638836	51638836	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	51638836	51638836	C	T	SNP	MAGED1	ENST00000375695	human	ensembl	74_37	+1	known	missense	c.901	p.R301W	1.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGED1	HGNC	ENSG00000179222				11	0	0	2	5	71.4286
MAGED1	0	genome.wustl.edu	37	X	51640603	51640603	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	51640603	51640603	C	T	SNP	MAGED1	ENST00000494718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAGED1	HGNC	ENSG00000179222				43	0	0	12	11	47.8261
SSX7	0	genome.wustl.edu	37	X	52674499	52674499	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	52674499	52674499	G	A	SNP	SSX7	ENST00000298181	human	ensembl	74_37	-1	known	silent	c.561	p.D187	0.195	pfam_SSXRD_motif	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754				55	0	0	19	30	61.2245
HUWE1	0	genome.wustl.edu	37	X	53574690	53574690	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	53574690	53574690	A	G	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.10580	p.V3527A	0.956	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				24	0	0	3	7	70
HUWE1	0	genome.wustl.edu	37	X	53613488	53613488	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	53613488	53613488	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.4786	p.T1596A	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				16	0	0	3	12	80
FAM120C	0	genome.wustl.edu	37	X	54114280	54114280	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	54114280	54114280	G	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.2545	p.P849T	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				52	0	0	9	24	72.7273
FAM120C	0	genome.wustl.edu	37	X	54159186	54159186	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	54159186	54159186	A	C	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.2001	p.S667R	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				17	0	0	5	10	66.6667
FGD1	0	genome.wustl.edu	37	X	54496803	54496803	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	54496803	54496803	C	T	SNP	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	silent	c.747	p.S249	0.058	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				23	0	0	2	13	86.6667
TRO	0	genome.wustl.edu	37	X	54955213	54955213	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	54955213	54955213	G	A	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.2056	p.D686N	0.243	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				22	0	0	6	14	70
MAGEH1	0	genome.wustl.edu	37	X	55479459	55479459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	55479459	55479459	G	A	SNP	MAGEH1	ENST00000342972	human	ensembl	74_37	+1	known	missense	c.652	p.A218T	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEH1	HGNC	ENSG00000187601				57	0	0	11	24	68.5714
SPIN3	0	genome.wustl.edu	37	X	57021144	57021144	+	Silent	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	57021144	57021144	A	G	SNP	SPIN3	ENST00000374919	human	ensembl	74_37	-1	known	silent	c.237	p.N79	1.000	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN3	HGNC	ENSG00000204271				171	0	0	51	88	63.3094
ZXDB	0	genome.wustl.edu	37	X	57619029	57619029	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	57619029	57619029	G	A	SNP	ZXDB	ENST00000374888	human	ensembl	74_37	+1	known	missense	c.548	p.G183D	0.986	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDB	HGNC	ENSG00000198455				8	0	0	8	9	52.9412
ZXDA	0	genome.wustl.edu	37	X	57935217	57935217	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	57935217	57935217	C	T	SNP	ZXDA	ENST00000358697	human	ensembl	74_37	-1	known	silent	c.1638	p.P546	0.141	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDA	HGNC	ENSG00000198205				60	0	0	14	34	70.8333
NLGN4X	0	genome.wustl.edu	37	X	5821576	5821576	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	5821576	5821576	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	silent	c.1203	p.D401	0.993	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				31	0	0	9	22	70.9677
SHOX	0	genome.wustl.edu	37	X	591664	591664	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	591664	591664	C	A	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	missense	c.32	p.S11Y	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960				350	0	0	173	68	28.2158
SHOX	0	genome.wustl.edu	37	X	601807	601807	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	601807	601807	G	A	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	silent	c.618	p.R206	0.993	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960				131	0	0	50	23	31.5068
NLGN4X	0	genome.wustl.edu	37	X	6069042	6069042	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	6069042	6069042	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	missense	c.466	p.E156K	0.999	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				55	0	0	17	46	73.0159
AMER1	0	genome.wustl.edu	37	X	63412011	63412011	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	63412011	63412011	C	A	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	nonsense	c.1156	p.E386*	0.737	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675				78	0	0	28	38	57.5758
MSN	0	genome.wustl.edu	37	X	64936689	64936689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	64936689	64936689	C	T	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	missense	c.22	p.R8C	0.996	pirsf_ERM,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				58	0	0	9	28	75.6757
STARD8	0	genome.wustl.edu	37	X	67935147	67935147	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	67935147	67935147	C	T	SNP	STARD8	ENST00000374599	human	ensembl	74_37	+1	known	missense	c.163	p.P55S	0.993	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD8	HGNC	ENSG00000130052				18	0	0	1	8	88.8889
DLG3	0	genome.wustl.edu	37	X	69669649	69669649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	69669649	69669649	C	T	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	missense	c.697	p.R233W	1.000	superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				11	0	0	4	5	55.5556
IL2RG	0	genome.wustl.edu	37	X	70331290	70331290	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	70331290	70331290	C	A	SNP	IL2RG	ENST00000374202	human	ensembl	74_37	-1	known	nonsense	c.100	p.E34*	1.000	NULL	pfam_IL-6_rcpt_alpha-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL2RG	HGNC	ENSG00000147168				48	0	0	7	21	75
TAF1	0	genome.wustl.edu	37	X	70597031	70597031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	70597031	70597031	G	A	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.701	p.R234Q	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				57	0	0	9	33	78.5714
TAF1	0	genome.wustl.edu	37	X	70601751	70601751	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	70601751	70601751	G	A	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.1516	p.D506N	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				66	0	0	20	34	62.963
TAF1	0	genome.wustl.edu	37	X	70608626	70608626	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	70608626	70608626	C	T	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.2605	p.R869C	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				97	0	0	16	66	80.4878
RGAG4	0	genome.wustl.edu	37	X	71349753	71349753	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	71349753	71349753	G	A	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	silent	c.1638	p.R546	0.032	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				42	0	0	36	4	10
RPS4X	0	genome.wustl.edu	37	X	71493691	71493691	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	71493691	71493691	C	T	SNP	RPS4X	ENST00000316084	human	ensembl	74_37	-1	known	silent	c.492	p.L164	1.000	pfam_Ribosomal_S4e_central_region,pirsf_Ribosomal_S4e	pfam_Ribosomal_S4e_central_region,pfam_Ribosomal_S4e_N,pfam_S4_RNA-bd,pfam_KOW,smart_S4_RNA-bd,pirsf_Ribosomal_S4e,pfscan_S4_RNA-bd	-	no_errors	RPS4X	HGNC	ENSG00000198034				37	0	0	32	3	8.57143
NAP1L2	0	genome.wustl.edu	37	X	72433253	72433253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	72433253	72433253	C	T	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	missense	c.1076	p.R359Q	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				66	0	0	20	44	68.75
NAP1L2	0	genome.wustl.edu	37	X	72433985	72433985	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	72433985	72433985	A	C	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	missense	c.344	p.L115R	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				71	0	0	27	42	60.8696
MAP2K4P1	0	genome.wustl.edu	37	X	72744984	72744984	+	RNA	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	72744984	72744984	G	T	SNP	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				18	0	0	2	19	90.4762
XIST	0	genome.wustl.edu	37	X	73041814	73041814	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73041814	73041814	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				16	0	0	5	8	61.5385
XIST	0	genome.wustl.edu	37	X	73045047	73045047	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73045047	73045047	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				22	0	0	12	21	63.6364
XIST	0	genome.wustl.edu	37	X	73048994	73048994	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73048994	73048994	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				34	0	0	9	15	62.5
XIST	0	genome.wustl.edu	37	X	73064507	73064507	+	RNA	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73064507	73064507	T	C	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				61	0	0	14	35	71.4286
XIST	0	genome.wustl.edu	37	X	73064940	73064940	+	RNA	SNP	A	A	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73064940	73064940	A	G	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				92	0	0	23	66	74.1573
XIST	0	genome.wustl.edu	37	X	73067487	73067487	+	RNA	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73067487	73067487	C	A	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				10	0	0	1	5	83.3333
RLIM	0	genome.wustl.edu	37	X	73811613	73811613	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73811613	73811613	G	A	SNP	RLIM	ENST00000332687	human	ensembl	74_37	-1	known	nonsense	c.1537	p.R513*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RLIM	HGNC	ENSG00000131263				34	0	0	12	27	69.2308
KIAA2022	0	genome.wustl.edu	37	X	73965454	73965454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	73965454	73965454	G	A	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.32	p.A11V	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				33	0	0	8	15	65.2174
ATRX	0	genome.wustl.edu	37	X	76938401	76938401	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	76938401	76938401	T	G	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.2347	p.S783R	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224				143	0	0	52	104	66.6667
MAGT1	0	genome.wustl.edu	37	X	77096753	77096753	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	77096753	77096753	T	C	SNP	MAGT1	ENST00000358075	human	ensembl	74_37	-1	known	silent	c.987	p.G329	1.000	pfam_OligosaccharylTrfase_OST3/OST6	pfam_OligosaccharylTrfase_OST3/OST6,superfamily_Thioredoxin-like_fold	-	no_errors	MAGT1	HGNC	ENSG00000102158				66	0	0	13	49	79.0323
DACH2	0	genome.wustl.edu	37	X	85404080	85404080	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	85404080	85404080	C	T	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	silent	c.456	p.F152	0.998	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				37	0	0	10	20	66.6667
KLHL4	0	genome.wustl.edu	37	X	86888822	86888822	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	86888822	86888822	A	C	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1623	p.E541D	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				45	0	0	20	27	57.4468
CPXCR1	0	genome.wustl.edu	37	X	88008703	88008703	+	Silent	SNP	T	T	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	88008703	88008703	T	C	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	silent	c.288	p.I96	0.691	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				28	0	0	5	22	81.4815
TBL1X	0	genome.wustl.edu	37	X	9679717	9679717	+	Silent	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	9679717	9679717	G	A	SNP	TBL1X	ENST00000217964	human	ensembl	74_37	+1	known	silent	c.1506	p.T502	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1X	HGNC	ENSG00000101849				44	0	0	9	25	73.5294
SHROOM2	0	genome.wustl.edu	37	X	9863383	9863383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	9863383	9863383	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.1435	p.P479S	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				25	0	0	5	19	79.1667
PCDH19	0	genome.wustl.edu	37	X	99662442	99662442	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	99662442	99662442	T	G	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.1154	p.Q385P	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				102	0	0	77	16	17.2043
SRPX2	0	genome.wustl.edu	37	X	99920638	99920638	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	99920638	99920638	C	A	SNP	SRPX2	ENST00000373004	human	ensembl	74_37	+1	known	missense	c.765	p.F255L	1.000	pfam_Hyalin,pfscan_Hyalin	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Thioredoxin-like_fold,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX2	HGNC	ENSG00000102359				125	0	0	34	140	80.4598
USP9Y	0	genome.wustl.edu	37	Y	14898521	14898521	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	14898521	14898521	C	A	SNP	USP9Y	ENST00000338981	human	ensembl	74_37	+1	known	missense	c.3349	p.H1117N	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,superfamily_Glycoside_hydrolase_SF,pfscan_Peptidase_C19/C67	-	no_errors	USP9Y	HGNC	ENSG00000114374				37	0	0	13	41	75.9259
DDX3Y	0	genome.wustl.edu	37	Y	15026499	15026499	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	15026499	15026499	C	A	SNP	DDX3Y	ENST00000336079	human	ensembl	74_37	+1	known	missense	c.697	p.L233I	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX3Y	HGNC	ENSG00000067048				53	0	0	24	35	59.322
NLGN4Y	0	genome.wustl.edu	37	Y	16941710	16941710	+	Silent	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	16941710	16941710	C	T	SNP	NLGN4Y	ENST00000382868	human	ensembl	74_37	+1	known	silent	c.1083	p.V361	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,prints_Neuroligin	-	no_errors	NLGN4Y	HGNC	ENSG00000165246				48	0	0	9	33	78.5714
RBMY2FP	0	genome.wustl.edu	37	Y	24457560	24457560	+	RNA	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	24457560	24457560	G	A	SNP	RBMY2FP	ENST00000303922	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBMY2FP	HGNC	ENSG00000243040				25	0	0	8	23	74.1935
ZFY	0	genome.wustl.edu	37	Y	2848017	2848017	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	2848017	2848017	G	T	SNP	ZFY	ENST00000155093	human	ensembl	74_37	+1	known	nonsense	c.2389	p.E797*	1.000	pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFY	HGNC	ENSG00000067646				71	0	0	49	5	9.25926
TGIF2LY	0	genome.wustl.edu	37	Y	3447605	3447605	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	3447605	3447605	G	A	SNP	TGIF2LY	ENST00000321217	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	0.952	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LY	HGNC	ENSG00000176679				139	0	0	31	75	70.7547
PRKY	0	genome.wustl.edu	37	Y	7239831	7239831	+	RNA	SNP	C	C	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	Y	7239831	7239831	C	T	SNP	PRKY	ENST00000528056	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRKY	HGNC	ENSG00000099725				13	0	0	4	10	71.4286
SMYD2	0	genome.wustl.edu	37	1	214491450	214491451	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	214491450	214491451	-	C	INS	SMYD2	ENST00000366957	human	ensembl	74_37	+1	known	frame_shift_ins	c.377_378	p.E126fs	1.000:0.999	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD2	HGNC	ENSG00000143499				165	0	0	105	78	42.623
OR2T4	0	genome.wustl.edu	37	1	248525681	248525681	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	248525681	248525681	A	-	DEL	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	frame_shift_del	c.799	p.K268fs	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				265	1	0.37594	175	67	27.686
ENSG00000237568	0	genome.wustl.edu	37	1	89735376	89735377	+	RNA	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	1	89735376	89735377	-	A	INS	ENSG00000237568	ENST00000437128	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008:0.008	-	-	-	no_errors	RP4-620F22.2	Clone_based_vega_gene	ENSG00000237568				21	0	0	14	5	26.3158
OR4P4	0	genome.wustl.edu	37	11	55406575	55406575	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55406575	55406575	T	-	DEL	OR4P4	ENST00000314612	human	ensembl	74_37	+1	known	frame_shift_del	c.742	p.F249fs	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4P4	HGNC	ENSG00000181927				139	0	0	109	41	27.3333
OR8I2	0	genome.wustl.edu	37	11	55861308	55861308	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	11	55861308	55861308	T	-	DEL	OR8I2	ENST00000302124	human	ensembl	74_37	+1	known	frame_shift_del	c.525	p.C178fs	0.881	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8I2	HGNC	ENSG00000172154				221	1	0.45045	135	40	22.8571
ST8SIA1	0	genome.wustl.edu	37	12	22354446	22354447	+	RNA	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	22354446	22354447	-	A	INS	ST8SIA1	ENST00000545494	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998:1.000	-	-	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				135	0	0	79	34	30.0885
GLS2	0	genome.wustl.edu	37	12	56872893	56872895	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	56872893	56872895	CTC	-	DEL	GLS2	ENST00000311966	human	ensembl	74_37	-1	known	in_frame_del	c.477_475	p.E159in_frame_del	1.000:1.000:1.000	superfamily_Beta-lactam/transpept-like	pfam_Glutaminase,pfam_Ankyrin_rpt,superfamily_Beta-lactam/transpept-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_Glutaminase	-	no_errors	GLS2	HGNC	ENSG00000135423				145	0	0	89	21	19.0909
LRRIQ1	0	genome.wustl.edu	37	12	85450183	85450184	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	12	85450183	85450184	-	A	INS	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	frame_shift_ins	c.1612_1613	p.I540fs	0.133:0.101	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640				62	0	0	82	25	23.3645
FAM155A	0	genome.wustl.edu	37	13	108518338	108518338	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	108518338	108518338	C	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	frame_shift_del	c.607	p.D203fs	0.252	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				216	0	0	120	35	22.5806
SLITRK1	0	genome.wustl.edu	37	13	84455509	84455509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	13	84455509	84455509	T	-	DEL	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	frame_shift_del	c.134	p.K45fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				145	0	0	98	39	28.4672
GJD2	0	genome.wustl.edu	37	15	35045244	35045244	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	35045244	35045244	C	-	DEL	GJD2	ENST00000290374	human	ensembl	74_37	-1	known	frame_shift_del	c.401	p.G134fs	1.000	prints_Connexin36	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin36	-	no_errors	GJD2	HGNC	ENSG00000159248				262	1	0.380228	139	65	31.8627
DUOX2	0	genome.wustl.edu	37	15	45404761	45404761	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	15	45404761	45404761	C	-	DEL	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	frame_shift_del	c.316	p.V106fs	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				78	0	0	53	14	20.8955
PRRT2	0	genome.wustl.edu	37	16	29825012	29825012	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	16	29825012	29825012	G	-	DEL	PRRT2	ENST00000567659	human	ensembl	74_37	+1	known	frame_shift_del	c.637	p.A214fs	1.000	NULL	pfam_CD225/Dispanin_fam	-	no_errors	PRRT2	HGNC	ENSG00000167371				46	0	0	17	5	22.7273
KAT7	0	genome.wustl.edu	37	17	47869397	47869398	+	Splice_Site	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	17	47869397	47869398	-	A	INS	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	splice_site_ins	c.163+2_163+1	e2+2	1.000:0.994	-	-	-	no_errors	KAT7	HGNC	ENSG00000136504				84	0	0	31	11	26.1905
CXADRP3	0	genome.wustl.edu	37	18	14478662	14478662	+	RNA	DEL	T	T	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	18	14478662	14478662	T	-	DEL	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.487	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				57	0	0	39	19	32.7586
ROCK2	0	genome.wustl.edu	37	2	11347936	11347937	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	11347936	11347937	-	T	INS	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	frame_shift_ins	c.2465_2464	p.M822fs	1.000:0.994	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				101	0	0	72	32	30.7692
TTN-AS1	0	genome.wustl.edu	37	2	179449717	179449717	+	RNA	DEL	A	A	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179449717	179449717	A	-	DEL	TTN-AS1	ENST00000419746	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				160	0	0	100	51	33.7748
TTN	0	genome.wustl.edu	37	2	179537380	179537381	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	179537380	179537381	-	T	INS	TTN	ENST00000342992	human	ensembl	74_37	-1	known	frame_shift_ins	c.30934_30933	p.E10311fs	1.000:0.999	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				31	0	0	23	11	32.3529
ANKRD36	0	genome.wustl.edu	37	2	97784210	97784211	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	97784210	97784211	-	A	INS	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	frame_shift_ins	c.442_443	p.L150fs	0.007:0.005	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				96	0	0	79	11	12.2222
LYG2	0	genome.wustl.edu	37	2	99860495	99860496	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	2	99860495	99860496	-	T	INS	LYG2	ENST00000333017	human	ensembl	74_37	-1	known	frame_shift_ins	c.487_486	p.F162fs	1.000:0.992	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674				111	0	0	71	21	22.8261
SDCBP2	0	genome.wustl.edu	37	20	1291527	1291528	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	20	1291527	1291528	-	T	INS	SDCBP2	ENST00000339987	human	ensembl	74_37	-1	known	frame_shift_ins	c.741_740	p.I248fs	0.607:0.840	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP2	HGNC	ENSG00000125775				57	0	0	32	9	21.9512
SYNPO2	0	genome.wustl.edu	37	4	119951703	119951704	+	Frame_Shift_Ins	INS	-	-	TTCCCAG			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	119951703	119951704	-	TTCCCAG	INS	SYNPO2	ENST00000307142	human	ensembl	74_37	+1	known	frame_shift_ins	c.1773_1774	p.G593fs	0.990:1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2	HGNC	ENSG00000172403				211	0	0	146	9	5.80645
ZNF718	0	genome.wustl.edu	37	4	154892	154893	+	RNA	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	154892	154893	-	A	INS	ZNF718	ENST00000400172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	ZNF718	HGNC	ENSG00000250312				11	0	0	18	7	28
KLF3	0	genome.wustl.edu	37	4	38696436	38696437	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	38696436	38696437	-	AA	INS	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_ins	c.765_766	p.R256fs	1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				159	0	0	90	42	31.8182
SHROOM3	0	genome.wustl.edu	37	4	77660178	77660179	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	4	77660178	77660179	-	T	INS	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	frame_shift_ins	c.852_853	p.S284fs	0.885:0.983	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				86	0	0	42	16	27.5862
ZNF608	0	genome.wustl.edu	37	5	124080775	124080776	+	RNA	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	124080775	124080776	-	A	INS	ZNF608	ENST00000512940	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.885:0.996	-	-	-	no_errors	ZNF608	HGNC	ENSG00000168916				23	0	0	8	5	38.4615
SLC38A9	0	genome.wustl.edu	37	5	54922327	54922328	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	5	54922327	54922328	-	A	INS	SLC38A9	ENST00000318672	human	ensembl	74_37	-1	known	frame_shift_ins	c.1681_1680	p.M560fs	1.000:0.998	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A9	HGNC	ENSG00000177058				152	0	0	101	44	30.3448
C6orf62	0	genome.wustl.edu	37	6	24714604	24714605	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	24714604	24714605	-	T	INS	C6orf62	ENST00000378119	human	ensembl	74_37	-1	known	frame_shift_ins	c.371_370	p.I124fs	1.000:1.000	NULL	NULL	-	no_errors	C6orf62	HGNC	ENSG00000112308				110	0	0	91	28	23.5294
TDRD6	0	genome.wustl.edu	37	6	46660415	46660416	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	6	46660415	46660416	-	C	INS	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_ins	c.4550_4551	p.E1517fs	0.009:0.002	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				79	0	0	70	33	32.0388
ZFHX4	0	genome.wustl.edu	37	8	77617928	77617929	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	77617928	77617929	-	A	INS	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_ins	c.1605_1606	p.Q537fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				64	0	0	44	15	25.4237
SNORA72	0	genome.wustl.edu	37	8	99054840	99054841	+	RNA	INS	-	-	AC			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	8	99054840	99054841	-	AC	INS	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033:0.030	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970				64	0	0	67	20	22.9885
ZMAT1	0	genome.wustl.edu	37	X	101138438	101138439	+	RNA	INS	-	-	T			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	101138438	101138439	-	T	INS	ZMAT1	ENST00000494068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432				15	0	0	33	8	19.5122
MIR513A1	0	genome.wustl.edu	37	X	146295032	146295032	+	RNA	DEL	A	A	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	146295032	146295032	A	-	DEL	MIR513A1	ENST00000385138	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR513A1	HGNC	ENSG00000207873				60	0	0	73	43	37.069
AFF2	0	genome.wustl.edu	37	X	148059926	148059926	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-8680-01A-11D-2394-08	TCGA-BR-8680-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	97474881-be38-42b2-882b-84bbe90efc52	603fc7a3-b983-4a39-8646-d52f55141734	X	148059926	148059926	T	-	DEL	AFF2	ENST00000370460	human	ensembl	74_37	+1	known	frame_shift_del	c.3511	p.F1171fs	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966				100	0	0	63	99	61.1111
