Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DENND2D	0	genome.wustl.edu	37	1	111737247	111737247	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	111737247	111737247	G	A	SNP	DENND2D	ENST00000357640	human	ensembl	74_37	-1	known	silent	c.747	p.A249	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2D	HGNC	ENSG00000162777				62	0	0	44	20	31.25
HRNR	0	genome.wustl.edu	37	1	152189237	152189237	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	152189237	152189237	C	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.4868	p.S1623T	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				15	0	0	8	3	27.2727
CELA2A	0	genome.wustl.edu	37	1	15789290	15789290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	15789290	15789290	C	T	SNP	CELA2A	ENST00000359621	human	ensembl	74_37	+1	known	missense	c.290	p.S97L	0.022	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA2A	HGNC	ENSG00000142615				145	0	0	127	14	9.92908
OR10X1	0	genome.wustl.edu	37	1	158549420	158549420	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	158549420	158549420	C	T	SNP	OR10X1	ENST00000368150	human	ensembl	74_37	-1	known	silent	c.270	p.T90	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10X1	HGNC	ENSG00000186400				73	0	0	64	8	11.1111
TFB2M	0	genome.wustl.edu	37	1	246729331	246729331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	246729331	246729331	G	A	SNP	TFB2M	ENST00000366514	human	ensembl	74_37	-1	known	missense	c.110	p.P37L	0.000	pirsf_Mt_di-Me-Ado_Trfase_2_prcur	pfam_rRNA_Ade_methylase_transferase,smart_rRNA_Ade_methylase_Trfase_N,pirsf_Mt_di-Me-Ado_Trfase_2_prcur	-	no_errors	TFB2M	HGNC	ENSG00000162851				91	0	0	64	20	23.8095
OR2T4	0	genome.wustl.edu	37	1	248524923	248524923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	248524923	248524923	C	T	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.41	p.S14L	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944				99	0	0	52	11	17.4603
C1orf123	0	genome.wustl.edu	37	1	53684566	53684566	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	53684566	53684566	C	T	SNP	C1orf123	ENST00000294360	human	ensembl	74_37	-1	known	silent	c.120	p.S40	0.730	pfam_DUF866_euk	pfam_DUF866_euk	-	no_errors	C1orf123	HGNC	ENSG00000162384				98	0	0	54	14	20.5882
C8B	0	genome.wustl.edu	37	1	57399077	57399077	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	57399077	57399077	C	A	SNP	C8B	ENST00000371237	human	ensembl	74_37	-1	known	nonsense	c.1483	p.E495*	1.000	pfam_MACPF,smart_MACPF,prints_MAC_perforin	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8B	HGNC	ENSG00000021852				87	0	0	57	16	21.9178
FAM175B	0	genome.wustl.edu	37	10	126517346	126517346	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	126517346	126517346	C	T	SNP	FAM175B	ENST00000298492	human	ensembl	74_37	+1	known	silent	c.480	p.L160	0.866	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	prints_FAM175_BRISC_cplx_Abro1_su,prints_FAM175	-	no_errors	FAM175B	HGNC	ENSG00000165660				53	0	0	51	4	7.27273
NEBL	0	genome.wustl.edu	37	10	21097582	21097582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	21097582	21097582	G	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2618	p.A873V	0.999	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				119	1	0.833333	108	28	20.5882
C10orf71	0	genome.wustl.edu	37	10	50530877	50530877	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	50530877	50530877	C	T	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	missense	c.287	p.A96V	0.998	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				127	0	0	119	25	17.3611
CTNNA3	0	genome.wustl.edu	37	10	69299327	69299327	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	69299327	69299327	C	T	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	silent	c.393	p.A131	0.999	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				89	0	0	91	17	15.7407
ITIH5	0	genome.wustl.edu	37	10	7684001	7684001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	7684001	7684001	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.188	p.R63H	1.000	pfam_VIT,smart_VIT	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				109	0	0	86	22	20.3704
RGR	0	genome.wustl.edu	37	10	86008690	86008690	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	86008690	86008690	C	T	SNP	RGR	ENST00000372092	human	ensembl	74_37	+1	known	missense	c.211	p.R71W	0.985	NULL	NULL	-	no_errors	RGR	HGNC	ENSG00000148604				82	0	0	96	15	13.5135
TCTN3	0	genome.wustl.edu	37	10	97444352	97444352	+	Silent	SNP	A	A	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	10	97444352	97444352	A	T	SNP	TCTN3	ENST00000371217	human	ensembl	74_37	-1	known	silent	c.999	p.T333	0.996	pfam_DUF1619	pfam_DUF1619	-	no_errors	TCTN3	HGNC	ENSG00000119977				71	0	0	40	8	16.6667
HECTD4	0	genome.wustl.edu	37	12	112711519	112711519	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	112711519	112711519	G	C	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.1336	p.Q446E	1.000	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				135	0	0	90	26	22.4138
SRRM4	0	genome.wustl.edu	37	12	119588837	119588837	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	119588837	119588837	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	silent	c.1092	p.P364	0.072	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				47	0	0	44	6	12
ENSG00000256577	0	genome.wustl.edu	37	12	313901	313901	+	RNA	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	313901	313901	G	A	SNP	ENSG00000256577	ENST00000539568	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-283I3.2	Clone_based_vega_gene	ENSG00000256577				24	0	0	23	7	23.3333
CPNE8	0	genome.wustl.edu	37	12	39154659	39154659	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	39154659	39154659	G	A	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	nonsense	c.712	p.R238*	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				115	0	0	49	14	22.2222
FMNL3	0	genome.wustl.edu	37	12	50052242	50052242	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	50052242	50052242	C	T	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	silent	c.588	p.A196	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791				52	0	0	43	5	10.4167
ANO2	0	genome.wustl.edu	37	12	5672628	5672628	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	12	5672628	5672628	A	C	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	missense	c.2837	p.F946C	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617				49	0	0	43	9	17.3077
WASF3	0	genome.wustl.edu	37	13	27256755	27256755	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	13	27256755	27256755	C	T	SNP	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	missense	c.995	p.A332V	0.962	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				280	0	0	338	64	15.9204
DCLK1	0	genome.wustl.edu	37	13	36410272	36410272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	13	36410272	36410272	G	A	SNP	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	missense	c.1127	p.S376L	0.900	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				165	1	0.60241	135	28	17.1779
DZIP1	0	genome.wustl.edu	37	13	96237021	96237021	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	13	96237021	96237021	G	A	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	silent	c.2493	p.G831	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				124	0	0	101	28	21.7054
SIX4	0	genome.wustl.edu	37	14	61186876	61186876	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	14	61186876	61186876	C	T	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	missense	c.1151	p.G384E	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625				83	0	0	46	10	17.8571
ZNF106	0	genome.wustl.edu	37	15	42716889	42716889	+	RNA	SNP	G	G	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	15	42716889	42716889	G	C	SNP	ZNF106	ENST00000565660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026	-	-	-	no_errors	ZNF106	HGNC	ENSG00000103994				9	0	0	5	5	50
C15orf26	0	genome.wustl.edu	37	15	81428869	81428869	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	15	81428869	81428869	G	A	SNP	C15orf26	ENST00000286732	human	ensembl	74_37	+1	known	missense	c.172	p.V58I	0.000	NULL	NULL	-	no_errors	C15orf26	HGNC	ENSG00000156206				66	0	0	45	10	18.1818
SNX29	0	genome.wustl.edu	37	16	12293530	12293530	+	Silent	SNP	A	A	G			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	12293530	12293530	A	G	SNP	SNX29	ENST00000306030	human	ensembl	74_37	+1	known	silent	c.513	p.Q171	0.960	NULL	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX29	HGNC	ENSG00000048471				22	0	0	18	3	14.2857
PLK1	0	genome.wustl.edu	37	16	23698880	23698880	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	23698880	23698880	A	G	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	missense	c.1127	p.D376G	1.000	NULL	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851				153	0	0	126	9	6.66667
LUC7L	0	genome.wustl.edu	37	16	240114	240114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	240114	240114	C	T	SNP	LUC7L	ENST00000293872	human	ensembl	74_37	-1	known	missense	c.827	p.R276H	1.000	NULL	pfam_Luc7-rel	-	no_errors	LUC7L	HGNC	ENSG00000007392				31	0	0	23	7	23.3333
AXIN1	0	genome.wustl.edu	37	16	347940	347940	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	347940	347940	C	T	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	silent	c.1566	p.A522	0.000	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				44	0	0	22	7	24.1379
SALL1	0	genome.wustl.edu	37	16	51174418	51174418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	51174418	51174418	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.1715	p.T572M	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				79	0	0	48	13	21.3115
TRADD	0	genome.wustl.edu	37	16	67189149	67189149	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	67189149	67189149	G	A	SNP	TRADD	ENST00000345057	human	ensembl	74_37	-1	known	nonsense	c.478	p.R160*	0.001	pfam_TRADD_N,superfamily_TRADD_N	pfam_TRADD_N,pfam_Death_domain,superfamily_TRADD_N,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	-	no_errors	TRADD	HGNC	ENSG00000102871				20	0	0	13	7	35
PRR25	0	genome.wustl.edu	37	16	855739	855739	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	855739	855739	G	A	SNP	PRR25	ENST00000301698	human	ensembl	74_37	+1	known	silent	c.297	p.P99	0.005	NULL	NULL	-	no_errors	PRR25	HGNC	ENSG00000167945				47	0	0	40	13	24.5283
TBC1D3	0	genome.wustl.edu	37	17	36340138	36340138	+	Silent	SNP	A	A	G			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	36340138	36340138	A	G	SNP	TBC1D3	ENST00000354664	human	ensembl	74_37	-1	known	silent	c.889	p.L297	0.353	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681				12	0	0	7	5	41.6667
CDC27	0	genome.wustl.edu	37	17	45249321	45249321	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	45249321	45249321	G	T	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	nonsense	c.213	p.C71*	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				36	0	0	31	3	8.82353
KAT7	0	genome.wustl.edu	37	17	47903390	47903390	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	47903390	47903390	A	C	SNP	KAT7	ENST00000259021	human	ensembl	74_37	+1	known	missense	c.1509	p.K503N	1.000	pfam_MOZ_SAS,superfamily_Acyl_CoA_acyltransferase	pfam_MOZ_SAS,pfam_Znf_C2HC,superfamily_Acyl_CoA_acyltransferase	-	no_errors	KAT7	HGNC	ENSG00000136504				120	0	0	78	25	24.2718
TP53	0	genome.wustl.edu	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	7577022	7577022	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.916	p.R306*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				118	0	0	60	17	22.0779
SLC5A5	0	genome.wustl.edu	37	19	17994560	17994560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	17994560	17994560	C	T	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	missense	c.1313	p.P438L	0.997	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				102	0	0	66	23	25.8427
KIAA1683	0	genome.wustl.edu	37	19	18378091	18378091	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	18378091	18378091	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	missense	c.259	p.E87K	0.721	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				137	0	0	93	32	25.6
ZNF536	0	genome.wustl.edu	37	19	31040026	31040026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	31040026	31040026	C	T	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	missense	c.3500	p.S1167L	0.999	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				99	0	0	92	8	8
GGN	0	genome.wustl.edu	37	19	38876902	38876902	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	38876902	38876902	G	A	SNP	GGN	ENST00000334928	human	ensembl	74_37	-1	known	missense	c.1000	p.R334W	0.000	NULL	NULL	-	no_errors	GGN	HGNC	ENSG00000179168				36	0	0	25	6	19.3548
LILRB5	0	genome.wustl.edu	37	19	54754820	54754820	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	54754820	54754820	T	G	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.1815	p.L605F	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				59	0	0	55	5	8.33333
INSR	0	genome.wustl.edu	37	19	7132311	7132311	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	7132311	7132311	G	A	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	silent	c.2700	p.V900	0.257	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				38	0	0	39	4	9.30233
OR1M1	0	genome.wustl.edu	37	19	9204290	9204290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	9204290	9204290	G	A	SNP	OR1M1	ENST00000429566	human	ensembl	74_37	+1	known	missense	c.370	p.V124M	0.985	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929				127	0	0	112	23	17.037
SCTR	0	genome.wustl.edu	37	2	120236430	120236430	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	120236430	120236430	C	T	SNP	SCTR	ENST00000019103	human	ensembl	74_37	-1	known	silent	c.258	p.E86	0.987	pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_secretin_rcpt,prints_GPCR_2_VIP_rcpt_1	-	no_errors	SCTR	HGNC	ENSG00000080293				77	0	0	60	15	20
STAT4	0	genome.wustl.edu	37	2	191934456	191934456	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	191934456	191934456	G	A	SNP	STAT4	ENST00000358470	human	ensembl	74_37	-1	known	silent	c.507	p.D169	0.965	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378				113	0	0	62	13	17.3333
CASP10	0	genome.wustl.edu	37	2	202050848	202050848	+	Splice_Site	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	202050848	202050848	G	A	SNP	CASP10	ENST00000286186	human	ensembl	74_37	+1	known	splice_site	c.347+1	e1+1	1.000	-	-	-	no_errors	CASP10	HGNC	ENSG00000003400				37	0	0	16	9	36
SLC30A6	0	genome.wustl.edu	37	2	32422820	32422820	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	32422820	32422820	G	A	SNP	SLC30A6	ENST00000282587	human	ensembl	74_37	+1	known	missense	c.590	p.R197Q	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A6	HGNC	ENSG00000152683				124	0	0	56	11	16.4179
NLRC4	0	genome.wustl.edu	37	2	32475567	32475567	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	32475567	32475567	T	C	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.1366	p.S456G	0.996	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				105	0	0	73	22	23.1579
NRXN1	0	genome.wustl.edu	37	2	50733718	50733718	+	Silent	SNP	G	G	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	50733718	50733718	G	C	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.2388	p.L796	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				37	0	0	24	6	20
BMP10	0	genome.wustl.edu	37	2	69093087	69093087	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	2	69093087	69093087	G	A	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	silent	c.951	p.N317	0.110	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217				69	0	0	51	14	21.5385
KIF16B	0	genome.wustl.edu	37	20	16336990	16336990	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	16336990	16336990	G	A	SNP	KIF16B	ENST00000354981	human	ensembl	74_37	-1	known	silent	c.3606	p.F1202	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Kinesin_motor_dom,pfam_Phox,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,superfamily_Phox,smart_Kinesin_motor_dom,smart_Phox,pfscan_Phox,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177				66	0	0	38	4	9.52381
XKR7	0	genome.wustl.edu	37	20	30584454	30584454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	30584454	30584454	G	A	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.934	p.A312T	0.998	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903				68	0	0	75	44	36.9748
MYL9	0	genome.wustl.edu	37	20	35176528	35176528	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	35176528	35176528	A	C	SNP	MYL9	ENST00000279022	human	ensembl	74_37	+1	known	missense	c.278	p.K93T	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL9	HGNC	ENSG00000101335				52	0	0	71	5	6.57895
ZHX3	0	genome.wustl.edu	37	20	39832810	39832810	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	39832810	39832810	G	T	SNP	ZHX3	ENST00000309060	human	ensembl	74_37	-1	known	missense	c.747	p.N249K	0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	ZHX3	HGNC	ENSG00000174306				116	0	0	139	22	13.6646
NCOA3	0	genome.wustl.edu	37	20	46266482	46266482	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	46266482	46266482	C	T	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.2467	p.H823Y	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151				155	0	0	111	14	11.2
PAK7	0	genome.wustl.edu	37	20	9561532	9561532	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	20	9561532	9561532	C	T	SNP	PAK7	ENST00000353224	human	ensembl	74_37	-1	known	missense	c.250	p.G84S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK7	HGNC	ENSG00000101349				163	0	0	118	38	24.359
TMPRSS3	0	genome.wustl.edu	37	21	43805630	43805630	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	21	43805630	43805630	C	A	SNP	TMPRSS3	ENST00000380399	human	ensembl	74_37	-1	known	missense	c.712	p.D238Y	0.003	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_Peptidase_S1,pfam_SRCR,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_LDrepeatLR_classA_rpt,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS3	HGNC	ENSG00000160183				184	0	0	168	39	18.8406
PRAME	0	genome.wustl.edu	37	22	22890846	22890846	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	22	22890846	22890846	C	T	SNP	PRAME	ENST00000398741	human	ensembl	74_37	-1	known	silent	c.1173	p.T391	0.068	NULL	NULL	-	no_errors	PRAME	HGNC	ENSG00000185686				102	0	0	106	17	13.8211
PLCXD2	0	genome.wustl.edu	37	3	111432963	111432963	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	111432963	111432963	C	T	SNP	PLCXD2	ENST00000477665	human	ensembl	74_37	+1	known	missense	c.854	p.T285M	0.993	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891				54	0	0	30	17	36.1702
WNT7A	0	genome.wustl.edu	37	3	13916592	13916592	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	13916592	13916592	C	T	SNP	WNT7A	ENST00000285018	human	ensembl	74_37	-1	known	silent	c.150	p.A50	0.925	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764				63	0	0	60	22	26.8293
PLCH1	0	genome.wustl.edu	37	3	155198891	155198891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	155198891	155198891	G	A	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.4948	p.R1650W	1.000	NULL	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805				64	0	0	53	13	19.697
SLC26A6	0	genome.wustl.edu	37	3	48664446	48664446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	48664446	48664446	C	T	SNP	SLC26A6	ENST00000395550	human	ensembl	74_37	-1	known	missense	c.1936	p.G646S	0.002	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A6	HGNC	ENSG00000225697				206	0	0	139	31	18.2353
DUSP7	0	genome.wustl.edu	37	3	52090146	52090146	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	52090146	52090146	C	T	SNP	DUSP7	ENST00000296483	human	ensembl	74_37	-1	known	silent	c.84	p.P28	0.927	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_MKP,prints_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP7	HGNC	ENSG00000164086				16	0	0	18	2	10
CCDC66	0	genome.wustl.edu	37	3	56597954	56597954	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	56597954	56597954	C	T	SNP	CCDC66	ENST00000394672	human	ensembl	74_37	+1	known	silent	c.345	p.T115	0.000	NULL	NULL	-	no_errors	CCDC66	HGNC	ENSG00000180376				53	0	0	33	4	10.8108
ROBO1	0	genome.wustl.edu	37	3	78763664	78763664	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	3	78763664	78763664	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	nonsense	c.928	p.R310*	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				38	0	0	27	9	25
C4orf33	0	genome.wustl.edu	37	4	130030644	130030644	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	130030644	130030644	C	T	SNP	C4orf33	ENST00000281146	human	ensembl	74_37	+1	known	missense	c.311	p.S104L	0.793	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470				61	0	0	37	4	9.7561
GPM6A	0	genome.wustl.edu	37	4	176555966	176555966	+	RNA	SNP	T	T	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	176555966	176555966	T	A	SNP	GPM6A	ENST00000506219	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	GPM6A	HGNC	ENSG00000150625				23	0	0	18	8	30.7692
KLF3	0	genome.wustl.edu	37	4	38690545	38690545	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	38690545	38690545	C	T	SNP	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	missense	c.397	p.R133W	0.286	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				95	0	0	67	22	24.7191
TMEM150C	0	genome.wustl.edu	37	4	83406787	83406787	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	83406787	83406787	G	A	SNP	TMEM150C	ENST00000449862	human	ensembl	74_37	-1	known	silent	c.627	p.G209	1.000	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150C	HGNC	ENSG00000249242				17	0	0	12	5	29.4118
HELQ	0	genome.wustl.edu	37	4	84376457	84376457	+	RNA	SNP	A	A	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	84376457	84376457	A	C	SNP	HELQ	ENST00000440639	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	HELQ	HGNC	ENSG00000163312				49	0	0	32	9	21.9512
IRF1	0	genome.wustl.edu	37	5	131822699	131822699	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	5	131822699	131822699	G	T	SNP	IRF1	ENST00000245414	human	ensembl	74_37	-1	known	nonsense	c.311	p.S104*	0.996	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,pirsf_Interferon_reg_fac-1/2,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF1	HGNC	ENSG00000125347				427	1	0.233645	351	20	5.39084
FSTL4	0	genome.wustl.edu	37	5	132545910	132545910	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	5	132545910	132545910	G	A	SNP	FSTL4	ENST00000265342	human	ensembl	74_37	-1	known	silent	c.1689	p.D563	0.293	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Kazal_dom,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL4	HGNC	ENSG00000053108				67	0	0	40	6	13.0435
GRIA1	0	genome.wustl.edu	37	5	153085359	153085359	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	5	153085359	153085359	A	T	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	nonsense	c.1585	p.K529*	1.000	pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				148	0	0	74	24	24.4898
RFPL4B	0	genome.wustl.edu	37	6	112671190	112671190	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	112671190	112671190	C	T	SNP	RFPL4B	ENST00000441065	human	ensembl	74_37	+1	known	missense	c.280	p.R94W	0.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4B	HGNC	ENSG00000251258				66	0	0	51	13	20.3125
HEY2	0	genome.wustl.edu	37	6	126080849	126080849	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	126080849	126080849	G	A	SNP	HEY2	ENST00000368364	human	ensembl	74_37	+1	known	silent	c.915	p.P305	0.025	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom,prints_Antifreeze_1	-	no_errors	HEY2	HGNC	ENSG00000135547				170	0	0	126	46	26.7442
MOXD1	0	genome.wustl.edu	37	6	132649655	132649655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	132649655	132649655	C	T	SNP	MOXD1	ENST00000367963	human	ensembl	74_37	-1	known	missense	c.742	p.D248N	0.997	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	MOXD1	HGNC	ENSG00000079931				75	0	0	45	16	26.2295
PHACTR2	0	genome.wustl.edu	37	6	144086652	144086652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	144086652	144086652	G	A	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.949	p.E317K	0.095	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				65	0	0	62	15	19.4805
CFB	0	genome.wustl.edu	37	6	31901495	31901495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	31901495	31901495	C	T	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	missense	c.365	p.T122M	0.378	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				101	0	0	67	24	26.3736
TNXB	0	genome.wustl.edu	37	6	32017048	32017048	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	32017048	32017048	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.9750	p.T3250	0.632	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				29	0	0	20	5	20
NCR2	0	genome.wustl.edu	37	6	41309565	41309565	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	6	41309565	41309565	G	A	SNP	NCR2	ENST00000373089	human	ensembl	74_37	+1	known	missense	c.428	p.R143H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	NCR2	HGNC	ENSG00000096264				93	0	0	68	25	26.8817
CAV1	0	genome.wustl.edu	37	7	116199088	116199088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	7	116199088	116199088	C	T	SNP	CAV1	ENST00000341049	human	ensembl	74_37	+1	known	missense	c.284	p.T95M	1.000	pfam_Caveolin	pfam_Caveolin	-	no_errors	CAV1	HGNC	ENSG00000105974				48	0	0	26	23	46.9388
ENSG00000229533	0	genome.wustl.edu	37	7	19184993	19184993	+	RNA	SNP	G	G	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	7	19184993	19184993	G	T	SNP	ENSG00000229533	ENST00000452700	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC003986.5	Clone_based_vega_gene	ENSG00000229533				37	0	0	35	9	20.4545
FIGNL1	0	genome.wustl.edu	37	7	50514267	50514267	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	7	50514267	50514267	A	T	SNP	FIGNL1	ENST00000356889	human	ensembl	74_37	-1	known	missense	c.719	p.V240E	0.746	NULL	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	FIGNL1	HGNC	ENSG00000132436				131	0	0	65	43	39.8148
LMTK2	0	genome.wustl.edu	37	7	97823365	97823365	+	Silent	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	7	97823365	97823365	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	silent	c.3588	p.D1196	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				94	0	0	76	11	12.6437
CSMD3	0	genome.wustl.edu	37	8	113569062	113569062	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	8	113569062	113569062	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.4164	p.H1388	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				90	0	0	77	5	6.09756
TRPA1	0	genome.wustl.edu	37	8	72970030	72970030	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	8	72970030	72970030	C	T	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.1015	p.D339N	0.994	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				76	0	0	45	13	22.4138
RALYL	0	genome.wustl.edu	37	8	85774574	85774574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	8	85774574	85774574	G	A	SNP	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	missense	c.457	p.V153I	0.537	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672				31	0	0	29	4	12.1212
FOXE1	0	genome.wustl.edu	37	9	100616580	100616580	+	Silent	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	9	100616580	100616580	G	A	SNP	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	silent	c.384	p.A128	0.999	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919				54	0	0	46	48	51.0638
OLFM1	0	genome.wustl.edu	37	9	138011806	138011806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	9	138011806	138011806	G	A	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	missense	c.1240	p.V414I	1.000	pfam_Olfac-like,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558				115	0	0	74	51	40.8
KIAA1210	0	genome.wustl.edu	37	X	118219449	118219449	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	X	118219449	118219449	G	T	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.4745	p.A1582E	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423				58	0	0	13	15	53.5714
USP11	0	genome.wustl.edu	37	X	47107237	47107237	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	X	47107237	47107237	C	T	SNP	USP11	ENST00000218348	human	ensembl	74_37	+1	known	nonsense	c.2800	p.R934*	0.015	NULL	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19/C67	-	no_errors	USP11	HGNC	ENSG00000102226				40	0	0	36	2	5.26316
ZNF41	0	genome.wustl.edu	37	X	47308224	47308224	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	X	47308224	47308224	A	C	SNP	ZNF41	ENST00000397050	human	ensembl	74_37	-1	known	missense	c.975	p.D325E	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF41	HGNC	ENSG00000147124				88	0	0	46	5	9.80392
XIST	0	genome.wustl.edu	37	X	73069809	73069809	+	RNA	SNP	C	C	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	X	73069809	73069809	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				24	0	0	8	13	61.9048
CD34	0	genome.wustl.edu	37	1	208063101	208063101	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	1	208063101	208063101	A	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82	p.S28fs	0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				25	0	0	19	2	9.52381
MMP12	0	genome.wustl.edu	37	11	102738795	102738796	+	Splice_Site	INS	-	-	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	11	102738795	102738796	-	T	INS	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	splice_site_ins	c.NULL	NULL	0.978:0.973	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				19	0	0	5	4	44.4444
PHKB	0	genome.wustl.edu	37	16	47694577	47694578	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	16	47694577	47694578	-	T	INS	PHKB	ENST00000299167	human	ensembl	74_37	+1	known	frame_shift_ins	c.2043_2044	p.K682fs	1.000:1.000	pfam_Glyco_hydro_15	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKB	HGNC	ENSG00000102893				99	0	0	61	13	17.5676
KRTAP4-12	0	genome.wustl.edu	37	17	39280351	39280352	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	39280351	39280352	AG	-	DEL	KRTAP4-12	ENST00000394014	human	ensembl	74_37	-1	known	frame_shift_del	c.24_23	p.S8fs	0.004:0.804	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-12	HGNC	ENSG00000213416				159	0	0	180	21	10.4478
UNK	0	genome.wustl.edu	37	17	73819366	73819367	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	17	73819366	73819367	AG	-	DEL	UNK	ENST00000293218	human	ensembl	74_37	+1	known	frame_shift_del	c.2268_2269	p.E757fs	0.964:1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNK	HGNC	ENSG00000132478				71	0	0	62	11	15.0685
ZNF569	0	genome.wustl.edu	37	19	37905170	37905171	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	19	37905170	37905171	-	A	INS	ZNF569	ENST00000316950	human	ensembl	74_37	-1	known	frame_shift_ins	c.390_389	p.S132fs	0.000:0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437				107	0	0	50	11	18.0328
SEL1L3	0	genome.wustl.edu	37	4	25780725	25780725	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8682-01A-11D-2394-08	TCGA-BR-8682-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	ea2055d1-7b8b-4aaf-9a70-8802f4deef9b	e959d24d-aab8-4a7e-a29c-5e2370ddcad8	4	25780725	25780725	A	-	DEL	SEL1L3	ENST00000399878	human	ensembl	74_37	-1	known	frame_shift_del	c.2558	p.F853fs	0.998	pfam_Sel1-like,smart_Sel1-like	pfam_Sel1-like,superfamily_ConA-like_lec_gl_sf,smart_Sel1-like	-	no_errors	SEL1L3	HGNC	ENSG00000091490				130	0	0	61	20	24.6914
