Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FAM19A3	0	genome.wustl.edu	37	1	113269276	113269276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	113269276	113269276	C	T	SNP	FAM19A3	ENST00000369630	human	ensembl	74_37	+1	known	missense	c.484	p.R162W	0.000	NULL	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A3	HGNC	ENSG00000184599				73	0	0	31	18	36.7347
BCAS2	0	genome.wustl.edu	37	1	115123954	115123954	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	115123954	115123954	C	G	SNP	BCAS2	ENST00000369541	human	ensembl	74_37	-1	known	missense	c.152	p.S51T	1.000	pfam_SPF27	pfam_SPF27	-	no_errors	BCAS2	HGNC	ENSG00000116752				298	0	0	175	33	15.8654
TSPAN2	0	genome.wustl.edu	37	1	115615613	115615613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	115615613	115615613	C	T	SNP	TSPAN2	ENST00000369516	human	ensembl	74_37	-1	known	missense	c.85	p.V29I	0.995	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN2	HGNC	ENSG00000134198				67	0	0	21	17	44.7368
ENSG00000234978	0	genome.wustl.edu	37	1	142803363	142803363	+	RNA	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	142803363	142803363	T	C	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978				17	0	0	6	5	45.4545
FLG	0	genome.wustl.edu	37	1	152278792	152278792	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	152278792	152278792	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8570	p.R2857H	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				1416	0	0	1177	94	7.39575
SYT11	0	genome.wustl.edu	37	1	155850376	155850376	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	155850376	155850376	G	T	SNP	SYT11	ENST00000368324	human	ensembl	74_37	+1	known	missense	c.947	p.R316I	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT11	HGNC	ENSG00000132718				203	0	0	114	14	10.9375
KIAA0907	0	genome.wustl.edu	37	1	155896493	155896493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	155896493	155896493	T	C	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	missense	c.655	p.S219G	0.995	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680				140	1	0.70922	95	13	12.037
DEDD	0	genome.wustl.edu	37	1	161091934	161091934	+	RNA	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	161091934	161091934	A	G	SNP	DEDD	ENST00000486041	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.781	-	-	-	no_errors	DEDD	HGNC	ENSG00000158796				149	0	0	134	16	10.6667
RXRG	0	genome.wustl.edu	37	1	165389170	165389170	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	165389170	165389170	G	C	SNP	RXRG	ENST00000359842	human	ensembl	74_37	-1	known	missense	c.379	p.P127A	1.000	pfam_Nuc_recep-AF1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171				65	0	0	49	14	22.2222
RXRG	0	genome.wustl.edu	37	1	165397991	165397991	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	165397991	165397991	G	T	SNP	RXRG	ENST00000359842	human	ensembl	74_37	-1	known	missense	c.262	p.P88T	0.988	pfam_Nuc_recep-AF1	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171				68	0	0	45	26	36.6197
SHCBP1L	0	genome.wustl.edu	37	1	182873396	182873396	+	Silent	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	182873396	182873396	T	A	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	silent	c.1506	p.I502	0.011	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				182	0	0	113	15	11.7188
KCNT2	0	genome.wustl.edu	37	1	196227467	196227467	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	196227467	196227467	C	G	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.3068	p.R1023T	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				83	0	0	70	12	14.6341
CFHR3	0	genome.wustl.edu	37	1	196744033	196744033	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	196744033	196744033	A	G	SNP	CFHR3	ENST00000367425	human	ensembl	74_37	+1	known	missense	c.17	p.N6S	0.000	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR3	HGNC	ENSG00000116785				98	0	0	68	12	15
F13B	0	genome.wustl.edu	37	1	197019844	197019844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	197019844	197019844	G	A	SNP	F13B	ENST00000367412	human	ensembl	74_37	-1	known	missense	c.1721	p.T574I	0.007	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	F13B	HGNC	ENSG00000143278				63	0	0	44	10	18.5185
KIF14	0	genome.wustl.edu	37	1	200571084	200571084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	200571084	200571084	C	T	SNP	KIF14	ENST00000367350	human	ensembl	74_37	-1	known	missense	c.2092	p.A698T	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF14	HGNC	ENSG00000118193				99	0	0	88	13	12.8713
PKP1	0	genome.wustl.edu	37	1	201291173	201291173	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	201291173	201291173	G	A	SNP	PKP1	ENST00000263946	human	ensembl	74_37	+1	known	missense	c.1478	p.R493H	1.000	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277				74	0	0	56	6	9.67742
PPP1R12B	0	genome.wustl.edu	37	1	202464542	202464542	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	202464542	202464542	C	T	SNP	PPP1R12B	ENST00000336894	human	ensembl	74_37	+1	known	missense	c.2267	p.S756L	0.157	pirsf_Pase-1_reg_su_12A/B/C_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_12A/B/C_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				93	0	0	48	10	17.2414
LRRN2	0	genome.wustl.edu	37	1	204587896	204587896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	204587896	204587896	G	A	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.1225	p.R409C	0.998	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				75	0	0	59	9	13.2353
GPR137B	0	genome.wustl.edu	37	1	236306163	236306163	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	236306163	236306163	T	A	SNP	GPR137B	ENST00000366592	human	ensembl	74_37	+1	known	missense	c.241	p.F81I	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585				155	0	0	101	17	14.4068
RYR2	0	genome.wustl.edu	37	1	237838114	237838114	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	237838114	237838114	T	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.8792	p.V2931E	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				37	0	0	19	7	26.9231
CDC20	0	genome.wustl.edu	37	1	43826794	43826794	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	43826794	43826794	G	A	SNP	CDC20	ENST00000310955	human	ensembl	74_37	+1	known	missense	c.1081	p.V361I	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CDC20	HGNC	ENSG00000117399				76	0	0	56	4	6.66667
NRD1	0	genome.wustl.edu	37	1	52280263	52280263	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	52280263	52280263	G	A	SNP	NRD1	ENST00000354831	human	ensembl	74_37	-1	known	nonsense	c.1783	p.Q595*	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	NRD1	HGNC	ENSG00000078618				87	0	0	59	14	19.1781
GBF1	0	genome.wustl.edu	37	10	104136717	104136717	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	104136717	104136717	C	T	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	silent	c.4311	p.G1437	0.324	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				116	1	0.854701	81	13	13.8298
SUFU	0	genome.wustl.edu	37	10	104377323	104377323	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	104377323	104377323	G	A	SNP	SUFU	ENST00000423559	human	ensembl	74_37	+1	putative	silent	c.1434	p.G478	0.000	NULL	pfam_SUFU_C,pfam_SUFU-like_domain	-	no_errors	SUFU	HGNC	ENSG00000107882				23	0	0	13	3	18.75
VENTX	0	genome.wustl.edu	37	10	135053288	135053288	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	135053288	135053288	G	T	SNP	VENTX	ENST00000325980	human	ensembl	74_37	+1	known	missense	c.350	p.S117I	0.998	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	VENTX	HGNC	ENSG00000151650				50	0	0	27	8	22.8571
PCDH15	0	genome.wustl.edu	37	10	55826517	55826517	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	55826517	55826517	T	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2220	p.K740N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				94	0	0	66	8	10.8108
CCAR1	0	genome.wustl.edu	37	10	70509403	70509403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	70509403	70509403	C	T	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.1079	p.P360L	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				173	0	0	125	16	11.3475
MRPS16	0	genome.wustl.edu	37	10	75009431	75009431	+	RNA	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	75009431	75009431	A	G	SNP	MRPS16	ENST00000479005	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MRPS16	HGNC	ENSG00000182180				22	0	0	15	3	16.6667
ITIH2	0	genome.wustl.edu	37	10	7771981	7771981	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	10	7771981	7771981	T	A	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	missense	c.1346	p.F449Y	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655				78	0	0	49	13	20.9677
TMEM225	0	genome.wustl.edu	37	11	123753982	123753982	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	123753982	123753982	A	G	SNP	TMEM225	ENST00000375026	human	ensembl	74_37	-1	known	missense	c.541	p.C181R	0.000	NULL	NULL	-	no_errors	TMEM225	HGNC	ENSG00000204300				82	0	0	56	7	11.1111
OR10S1	0	genome.wustl.edu	37	11	123847713	123847713	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	123847713	123847713	A	C	SNP	OR10S1	ENST00000531945	human	ensembl	74_37	-1	known	missense	c.686	p.V229G	0.036	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248				88	0	0	66	10	13.1579
RAG1	0	genome.wustl.edu	37	11	36595009	36595009	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	36595009	36595009	C	A	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.155	p.S52Y	0.004	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				125	0	0	91	15	14.1509
C11orf94	0	genome.wustl.edu	37	11	45928156	45928156	+	Silent	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	45928156	45928156	G	C	SNP	C11orf94	ENST00000449465	human	ensembl	74_37	-1	known	silent	c.261	p.P87	0.099	NULL	NULL	-	no_errors	C11orf94	HGNC	ENSG00000234776				127	0	0	62	14	18.4211
MS4A8	0	genome.wustl.edu	37	11	60476241	60476241	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	60476241	60476241	A	G	SNP	MS4A8	ENST00000300226	human	ensembl	74_37	+1	known	missense	c.521	p.Y174C	0.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	MS4A8	HGNC	ENSG00000166959				91	0	0	58	12	17.1429
PHRF1	0	genome.wustl.edu	37	11	608501	608501	+	Silent	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	608501	608501	A	G	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	silent	c.3045	p.G1015	0.002	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				55	0	0	33	5	13.1579
RPLP0P2	0	genome.wustl.edu	37	11	61405082	61405082	+	RNA	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	61405082	61405082	C	T	SNP	RPLP0P2	ENST00000496593	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPLP0P2	HGNC	ENSG00000243742				75	0	0	46	10	17.8571
ARAP1	0	genome.wustl.edu	37	11	72422489	72422489	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	72422489	72422489	A	C	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	missense	c.1078	p.F360V	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				96	0	0	78	8	9.30233
OR2AT4	0	genome.wustl.edu	37	11	74800351	74800351	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	74800351	74800351	G	T	SNP	OR2AT4	ENST00000305159	human	ensembl	74_37	-1	known	missense	c.408	p.H136Q	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Olfact_rcpt	-	no_errors	OR2AT4	HGNC	ENSG00000171561				119	0	0	90	16	15.0943
ANO4	0	genome.wustl.edu	37	12	101520836	101520836	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	101520836	101520836	C	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	silent	c.2856	p.N952	0.207	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				39	0	0	24	4	14.2857
OAS2	0	genome.wustl.edu	37	12	113424902	113424902	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	113424902	113424902	C	T	SNP	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	silent	c.237	p.L79	0.407	pfscan_2-5-oligoadenylate_synth_N	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335				154	0	0	116	15	11.4504
NOS1	0	genome.wustl.edu	37	12	117658007	117658007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	117658007	117658007	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.4043	p.G1348E	1.000	pfam_OxRdtase_FAD/NAD-bd,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				263	1	0.378788	229	34	12.9278
TMEM132B	0	genome.wustl.edu	37	12	125834316	125834316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	125834316	125834316	T	C	SNP	TMEM132B	ENST00000299308	human	ensembl	74_37	+1	known	missense	c.371	p.I124T	1.000	NULL	NULL	-	no_errors	TMEM132B	HGNC	ENSG00000139364				158	0	0	135	41	23.2955
GPR133	0	genome.wustl.edu	37	12	131466566	131466566	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	131466566	131466566	C	T	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.448	p.R150W	0.990	superfamily_ConA-like_lec_gl_sf	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				96	0	0	78	11	12.3596
LRMP	0	genome.wustl.edu	37	12	25254154	25254154	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	25254154	25254154	G	A	SNP	LRMP	ENST00000354454	human	ensembl	74_37	+1	known	missense	c.784	p.V262I	1.000	pfam_MRVI1	pfam_MRVI1	-	no_errors	LRMP	HGNC	ENSG00000118308				91	0	0	59	10	14.4928
NACA	0	genome.wustl.edu	37	12	57110008	57110008	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	57110008	57110008	G	A	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	missense	c.5306	p.A1769V	0.000	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				67	0	0	50	11	18.0328
B4GALNT1	0	genome.wustl.edu	37	12	58022543	58022543	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	58022543	58022543	G	T	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	missense	c.955	p.R319S	0.851	pfam_Glyco_trans_2,pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454				85	0	0	57	8	12.3077
ENSG00000255583	0	genome.wustl.edu	37	12	64078703	64078703	+	RNA	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	64078703	64078703	C	T	SNP	ENSG00000255583	ENST00000541353	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-415I12.2	Clone_based_vega_gene	ENSG00000255583				47	0	0	16	8	33.3333
SYT1	0	genome.wustl.edu	37	12	79611374	79611374	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	79611374	79611374	C	T	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	silent	c.75	p.N25	0.997	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715				82	0	0	53	4	7.01754
OTOGL	0	genome.wustl.edu	37	12	80750659	80750659	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	80750659	80750659	G	A	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.5957	p.R1986Q	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899				34	0	0	31	4	11.4286
PLXNC1	0	genome.wustl.edu	37	12	94603463	94603463	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	12	94603463	94603463	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	nonsense	c.1537	p.R513*	0.989	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				130	0	0	72	16	18.1818
PCDH20	0	genome.wustl.edu	37	13	61987146	61987146	+	Silent	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	13	61987146	61987146	T	C	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	silent	c.1086	p.K362	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				170	0	0	93	16	14.6789
SLITRK6	0	genome.wustl.edu	37	13	86368485	86368485	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	13	86368485	86368485	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.2159	p.S720N	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				395	0	0	320	54	14.4385
NPAS3	0	genome.wustl.edu	37	14	34269261	34269261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	14	34269261	34269261	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.1748	p.S583L	1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				23	0	0	13	4	23.5294
SYNE2	0	genome.wustl.edu	37	14	64556322	64556322	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	14	64556322	64556322	T	G	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	missense	c.11701	p.S3901A	0.995	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				57	0	0	37	19	33.9286
COX16	0	genome.wustl.edu	37	14	70826374	70826374	+	RNA	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	14	70826374	70826374	C	T	SNP	COX16	ENST00000557612	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COX16	HGNC	ENSG00000133983				28	0	0	31	4	11.4286
STON2	0	genome.wustl.edu	37	14	81744110	81744110	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	14	81744110	81744110	T	G	SNP	STON2	ENST00000267540	human	ensembl	74_37	-1	known	missense	c.1545	p.K515N	1.000	pirsf_Stonin,pfscan_SHD	pfam_Stonin2_N,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pirsf_Stonin,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON2	HGNC	ENSG00000140022				170	0	0	97	38	28.1481
SERPINA1	0	genome.wustl.edu	37	14	94847443	94847443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	14	94847443	94847443	C	T	SNP	SERPINA1	ENST00000355814	human	ensembl	74_37	-1	known	missense	c.682	p.E228K	0.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA1	HGNC	ENSG00000197249				53	0	0	20	12	37.5
SNORD116-9	0	genome.wustl.edu	37	15	25318336	25318336	+	RNA	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	15	25318336	25318336	G	A	SNP	SNORD116-9	ENST00000384000	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	SNORD116-9	HGNC	ENSG00000206727				240	0	0	137	20	12.7389
DUOX1	0	genome.wustl.edu	37	15	45428813	45428813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	15	45428813	45428813	G	A	SNP	DUOX1	ENST00000321429	human	ensembl	74_37	+1	known	missense	c.1012	p.V338I	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal	-	no_errors	DUOX1	HGNC	ENSG00000137857				97	0	0	77	9	10.4651
MAP2K1	0	genome.wustl.edu	37	15	66729154	66729154	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	15	66729154	66729154	G	C	SNP	MAP2K1	ENST00000307102	human	ensembl	74_37	+1	known	missense	c.362	p.C121S	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K1	HGNC	ENSG00000169032				77	0	0	74	18	19.5652
PEX11A	0	genome.wustl.edu	37	15	90226909	90226909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	15	90226909	90226909	C	T	SNP	PEX11A	ENST00000300056	human	ensembl	74_37	-1	known	missense	c.443	p.R148Q	0.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11A	HGNC	ENSG00000166821				227	0	0	177	19	9.69388
KIAA0556	0	genome.wustl.edu	37	16	27752044	27752044	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	27752044	27752044	G	A	SNP	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	missense	c.2426	p.R809Q	0.000	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				59	0	0	61	13	17.5676
MVP	0	genome.wustl.edu	37	16	29853242	29853242	+	Silent	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	29853242	29853242	C	A	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	silent	c.1443	p.V481	1.000	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364				55	0	0	43	7	14
ENSG00000261405	0	genome.wustl.edu	37	16	33365442	33365442	+	RNA	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	33365442	33365442	G	T	SNP	ENSG00000261405	ENST00000568520	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	RP11-23E10.4	Clone_based_vega_gene	ENSG00000261405				37	0	0	16	4	20
DDX28	0	genome.wustl.edu	37	16	68055970	68055970	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	68055970	68055970	G	A	SNP	DDX28	ENST00000332395	human	ensembl	74_37	-1	known	missense	c.1136	p.A379V	0.106	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX28	HGNC	ENSG00000182810				105	0	0	80	13	13.9785
WDR90	0	genome.wustl.edu	37	16	711480	711480	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	711480	711480	G	T	SNP	WDR90	ENST00000549091	human	ensembl	74_37	+1	novel	missense	c.3652	p.D1218Y	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_DUF667,pfam_Nucleoporin_Nup160,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR90	HGNC	ENSG00000161996				111	0	0	53	10	15.873
CHST6	0	genome.wustl.edu	37	16	75512895	75512895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	75512895	75512895	G	A	SNP	CHST6	ENST00000332272	human	ensembl	74_37	-1	known	missense	c.832	p.R278W	0.993	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST6	HGNC	ENSG00000183196				95	0	0	65	8	10.9589
CCDC78	0	genome.wustl.edu	37	16	775269	775269	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	16	775269	775269	G	C	SNP	CCDC78	ENST00000293889	human	ensembl	74_37	-1	known	missense	c.460	p.P154A	0.000	NULL	NULL	-	no_errors	CCDC78	HGNC	ENSG00000162004				149	0	0	90	11	10.8911
MYH13	0	genome.wustl.edu	37	17	10216579	10216579	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	10216579	10216579	G	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	silent	c.4077	p.A1359	0.992	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				243	0	0	138	17	10.9677
COX10	0	genome.wustl.edu	37	17	13980159	13980159	+	Silent	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	13980159	13980159	A	G	SNP	COX10	ENST00000261643	human	ensembl	74_37	+1	known	silent	c.285	p.E95	0.003	pirsf_Protohaem_IX_farnesylTrfase_mt	pfam_UbiA_prenyltransferase,pirsf_Protohaem_IX_farnesylTrfase_mt,tigrfam_Protohaem_IX_farnesylTrfase	-	no_errors	COX10	HGNC	ENSG00000006695				117	0	0	63	19	23.1707
KRTAP1-5	0	genome.wustl.edu	37	17	39183049	39183049	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	39183049	39183049	C	T	SNP	KRTAP1-5	ENST00000361883	human	ensembl	74_37	-1	known	missense	c.359	p.R120H	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP1-5	HGNC	ENSG00000221852				38	0	0	43	8	15.6863
SGCA	0	genome.wustl.edu	37	17	48252711	48252711	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	48252711	48252711	C	T	SNP	SGCA	ENST00000513821	human	ensembl	74_37	+1	known	missense	c.868	p.P290S	0.998	NULL	pfam_Sarcoglycan_2,superfamily_Cadherin-like,smart_Cadg	-	no_errors	SGCA	HGNC	ENSG00000108823				40	0	0	13	10	43.4783
FBF1	0	genome.wustl.edu	37	17	73915948	73915948	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	73915948	73915948	T	A	SNP	FBF1	ENST00000389570	human	ensembl	74_37	-1	known	missense	c.1897	p.I633F	0.000	NULL	superfamily_HRDC-like	-	no_errors	FBF1	HGNC	ENSG00000188878				73	0	0	51	10	16.3934
RPTOR	0	genome.wustl.edu	37	17	78896529	78896529	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	78896529	78896529	C	T	SNP	RPTOR	ENST00000306801	human	ensembl	74_37	+1	known	silent	c.2526	p.T842	0.006	superfamily_ARM-type_fold	pfam_HEAT,pfam_WD40_repeat,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom,prints_Raptor	-	no_errors	RPTOR	HGNC	ENSG00000141564				10	0	0	5	5	50
RFNG	0	genome.wustl.edu	37	17	80006957	80006957	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	80006957	80006957	A	C	SNP	RFNG	ENST00000310496	human	ensembl	74_37	-1	known	missense	c.864	p.H288Q	0.009	pfam_Fringe-like,pirsf_Fringe	pfam_Fringe-like,pirsf_Fringe	-	no_errors	RFNG	HGNC	ENSG00000169733				70	0	0	27	3	10
PIK3R5	0	genome.wustl.edu	37	17	8792137	8792137	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	8792137	8792137	C	A	SNP	PIK3R5	ENST00000447110	human	ensembl	74_37	-1	known	nonsense	c.967	p.E323*	1.000	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R5	HGNC	ENSG00000141506				51	0	0	32	6	15.7895
DLGAP1	0	genome.wustl.edu	37	18	3742442	3742442	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	18	3742442	3742442	A	G	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.1243	p.S415P	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				56	0	0	44	8	15.3846
TNFRSF11A	0	genome.wustl.edu	37	18	60036280	60036280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	18	60036280	60036280	C	T	SNP	TNFRSF11A	ENST00000586569	human	ensembl	74_37	+1	known	missense	c.1130	p.P377L	1.000	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11A,prints_TNFR_11	-	no_errors	TNFRSF11A	HGNC	ENSG00000141655				99	0	0	40	12	23.0769
SERPINB7	0	genome.wustl.edu	37	18	61471529	61471529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	18	61471529	61471529	C	T	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	missense	c.803	p.T268I	0.005	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				53	0	0	48	5	9.43396
LRRC30	0	genome.wustl.edu	37	18	7231917	7231917	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	18	7231917	7231917	G	A	SNP	LRRC30	ENST00000383467	human	ensembl	74_37	+1	known	missense	c.781	p.A261T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC30	HGNC	ENSG00000206422				202	0	0	80	96	54.5455
CYP4F22	0	genome.wustl.edu	37	19	15636337	15636337	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	15636337	15636337	C	T	SNP	CYP4F22	ENST00000269703	human	ensembl	74_37	+1	known	missense	c.190	p.R64W	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F22	HGNC	ENSG00000171954				61	0	0	28	14	33.3333
ZNF626	0	genome.wustl.edu	37	19	20808009	20808009	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	20808009	20808009	C	A	SNP	ZNF626	ENST00000601440	human	ensembl	74_37	-1	known	missense	c.674	p.G225V	0.998	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF626	HGNC	ENSG00000188171				79	0	0	68	20	22.7273
ZNF429	0	genome.wustl.edu	37	19	21720043	21720043	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	21720043	21720043	C	T	SNP	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	silent	c.1188	p.P396	0.963	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				55	0	0	40	9	18.3673
SF3A2	0	genome.wustl.edu	37	19	2247812	2247812	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	2247812	2247812	C	G	SNP	SF3A2	ENST00000221494	human	ensembl	74_37	+1	known	missense	c.662	p.P221R	0.994	NULL	smart_Znf_U1,pfscan_Znf_C2H2_matrin	-	no_errors	SF3A2	HGNC	ENSG00000104897				124	0	0	53	8	13.1148
CACTIN	0	genome.wustl.edu	37	19	3623842	3623842	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	3623842	3623842	C	T	SNP	CACTIN	ENST00000221899	human	ensembl	74_37	-1	known	silent	c.282	p.T94	0.016	NULL	pfam_Cactin_dom,pfam_Cactin_C	-	no_errors	CACTIN	HGNC	ENSG00000105298				44	0	0	28	5	15.1515
TBCB	0	genome.wustl.edu	37	19	36611658	36611658	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	36611658	36611658	C	T	SNP	TBCB	ENST00000221855	human	ensembl	74_37	+1	known	missense	c.305	p.S102F	1.000	superfamily_CAP-Gly_domain	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	TBCB	HGNC	ENSG00000105254				78	0	0	72	9	11.1111
LRFN1	0	genome.wustl.edu	37	19	39805434	39805434	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	39805434	39805434	C	T	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	silent	c.543	p.A181	0.878	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				25	0	0	15	5	25
EGLN2	0	genome.wustl.edu	37	19	41307124	41307124	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	41307124	41307124	G	A	SNP	EGLN2	ENST00000303961	human	ensembl	74_37	+1	known	missense	c.647	p.G216D	0.957	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	EGLN2	HGNC	ENSG00000269858				150	0	0	101	14	12.1739
LILRB5	0	genome.wustl.edu	37	19	54760505	54760505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	54760505	54760505	C	T	SNP	LILRB5	ENST00000450632	human	ensembl	74_37	-1	known	missense	c.202	p.A68T	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB5	HGNC	ENSG00000105609				261	1	0.381679	196	43	17.9916
NLRP7	0	genome.wustl.edu	37	19	55447693	55447693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	55447693	55447693	G	A	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.2320	p.R774C	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				48	0	0	27	9	25
ZNF417	0	genome.wustl.edu	37	19	58420784	58420784	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	19	58420784	58420784	G	A	SNP	ZNF417	ENST00000312026	human	ensembl	74_37	-1	known	nonsense	c.862	p.R288*	0.018	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF417	HGNC	ENSG00000173480				219	0	0	175	29	14.2157
ZC3H8	0	genome.wustl.edu	37	2	112991747	112991747	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	112991747	112991747	G	A	SNP	ZC3H8	ENST00000272570	human	ensembl	74_37	-1	known	missense	c.571	p.R191C	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H8	HGNC	ENSG00000144161				20	0	0	28	3	9.67742
POLR1B	0	genome.wustl.edu	37	2	113322007	113322007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	113322007	113322007	C	T	SNP	POLR1B	ENST00000448770	human	ensembl	74_37	+1	known	missense	c.242	p.T81M	0.998	NULL	NULL	-	no_errors	POLR1B	HGNC	ENSG00000125630				137	0	0	85	16	15.8416
LRP1B	0	genome.wustl.edu	37	2	141819691	141819691	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	141819691	141819691	G	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1165	p.L389I	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				146	0	0	103	22	17.6
KCNH7	0	genome.wustl.edu	37	2	163393500	163393500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	163393500	163393500	G	A	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	missense	c.398	p.T133M	0.999	superfamily_PAS,tigrfam_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611				184	0	0	97	47	32.6389
TTN	0	genome.wustl.edu	37	2	179402500	179402500	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	179402500	179402500	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.91730	p.R30577L	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				64	0	0	48	6	11.1111
TTN	0	genome.wustl.edu	37	2	179452842	179452842	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	179452842	179452842	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.55588	p.G18530R	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				75	0	0	46	18	28.125
TTN	0	genome.wustl.edu	37	2	179483457	179483457	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	179483457	179483457	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.39116	p.P13039H	0.833	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	45	4	8.16327
CALCRL	0	genome.wustl.edu	37	2	188225342	188225342	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	188225342	188225342	T	A	SNP	CALCRL	ENST00000392370	human	ensembl	74_37	-1	known	missense	c.764	p.Y255F	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_CGRP1_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCRL	HGNC	ENSG00000064989				73	0	0	57	5	8.06452
UNC80	0	genome.wustl.edu	37	2	210642188	210642188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	210642188	210642188	G	A	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.505	p.E169K	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406				159	0	0	77	41	34.7458
CCDC108	0	genome.wustl.edu	37	2	219875581	219875581	+	Silent	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	219875581	219875581	G	T	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.4095	p.G1365	0.006	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				49	0	0	19	11	36.6667
PAX3	0	genome.wustl.edu	37	2	223086025	223086025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	223086025	223086025	C	T	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.874	p.G292R	1.000	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				232	0	0	167	73	30.4167
MFSD2B	0	genome.wustl.edu	37	2	24240392	24240392	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	24240392	24240392	C	T	SNP	MFSD2B	ENST00000338315	human	ensembl	74_37	+1	known	silent	c.615	p.G205	0.257	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD2B	HGNC	ENSG00000205639				16	0	0	10	3	23.0769
SRD5A2	0	genome.wustl.edu	37	2	31754396	31754396	+	RNA	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	31754396	31754396	G	A	SNP	SRD5A2	ENST00000233139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.622	-	-	-	no_errors	SRD5A2	HGNC	ENSG00000049319				35	0	0	31	6	16.2162
PLEKHH2	0	genome.wustl.edu	37	2	43922307	43922307	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	43922307	43922307	G	A	SNP	PLEKHH2	ENST00000282406	human	ensembl	74_37	+1	known	missense	c.446	p.R149H	1.000	NULL	pfam_Pleckstrin_homology,pfam_MyTH4_dom,pfam_FERM_central,superfamily_FERM_central,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology	-	no_errors	PLEKHH2	HGNC	ENSG00000152527				23	0	0	26	4	13.3333
FAM110C	0	genome.wustl.edu	37	2	46121	46121	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	46121	46121	C	G	SNP	FAM110C	ENST00000327669	human	ensembl	74_37	-1	known	missense	c.265	p.A89P	0.467	NULL	NULL	-	no_errors	FAM110C	HGNC	ENSG00000184731				23	0	0	19	3	13.6364
USP34	0	genome.wustl.edu	37	2	61493232	61493232	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	61493232	61493232	C	A	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.5504	p.C1835F	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				87	0	0	50	12	19.3548
EHBP1	0	genome.wustl.edu	37	2	63085542	63085542	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	63085542	63085542	A	T	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	missense	c.636	p.E212D	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504				98	0	0	67	13	16.25
SMYD5	0	genome.wustl.edu	37	2	73446046	73446046	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	2	73446046	73446046	C	T	SNP	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	missense	c.154	p.R52W	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632				80	0	0	62	5	7.46269
SGK2	0	genome.wustl.edu	37	20	42213598	42213598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	42213598	42213598	C	T	SNP	SGK2	ENST00000341458	human	ensembl	74_37	+1	known	missense	c.1226	p.S409L	1.000	pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK2	HGNC	ENSG00000101049				176	0	0	180	23	11.33
CYP24A1	0	genome.wustl.edu	37	20	52779221	52779221	+	RNA	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	52779221	52779221	T	C	SNP	CYP24A1	ENST00000487593	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	CYP24A1	HGNC	ENSG00000019186				60	0	0	64	10	13.5135
CHGB	0	genome.wustl.edu	37	20	5903632	5903632	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	5903632	5903632	C	A	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	missense	c.842	p.P281H	1.000	pfam_Granin	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				25	0	0	21	4	16
CHGB	0	genome.wustl.edu	37	20	5905657	5905657	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	5905657	5905657	C	G	SNP	CHGB	ENST00000378961	human	ensembl	74_37	+1	known	missense	c.1996	p.L666V	1.000	pfam_Granin,prints_Chromogranin_AB	pfam_Granin,prints_Chromogranin_AB	-	no_errors	CHGB	HGNC	ENSG00000089199				48	0	0	30	9	23.0769
COL20A1	0	genome.wustl.edu	37	20	61956812	61956812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	61956812	61956812	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.3410	p.G1137E	1.000	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				48	0	0	60	6	9.09091
OPRL1	0	genome.wustl.edu	37	20	62729814	62729814	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	20	62729814	62729814	C	T	SNP	OPRL1	ENST00000336866	human	ensembl	74_37	+1	known	missense	c.775	p.R259W	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Opioid_rcpt,prints_Somatstn_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_X_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRL1	HGNC	ENSG00000125510				125	0	0	124	8	6.06061
SON	0	genome.wustl.edu	37	21	34927514	34927514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	21	34927514	34927514	C	T	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	missense	c.5977	p.R1993C	0.990	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140				84	0	0	41	15	26.7857
UBASH3A	0	genome.wustl.edu	37	21	43829575	43829575	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	21	43829575	43829575	C	A	SNP	UBASH3A	ENST00000319294	human	ensembl	74_37	+1	known	missense	c.212	p.P71H	1.000	superfamily_UBA-like	pfam_His_Pase_superF_clade-1,pfam_SH3_domain,superfamily_SH3_domain,superfamily_UBA-like,smart_SH3_domain,pfscan_SH3_domain,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBASH3A	HGNC	ENSG00000160185				136	0	0	85	18	17.4757
RRP1B	0	genome.wustl.edu	37	21	45096660	45096660	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	21	45096660	45096660	G	C	SNP	RRP1B	ENST00000340648	human	ensembl	74_37	+1	known	missense	c.661	p.V221L	0.304	NULL	pfam_Nop52	-	no_errors	RRP1B	HGNC	ENSG00000160208				89	0	0	62	7	10.1449
ARVCF	0	genome.wustl.edu	37	22	19969506	19969506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	22	19969506	19969506	C	T	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.319	p.V107M	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				69	0	0	42	9	17.6471
RTDR1	0	genome.wustl.edu	37	22	23482460	23482460	+	Silent	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	22	23482460	23482460	A	G	SNP	RTDR1	ENST00000216036	human	ensembl	74_37	-1	known	silent	c.148	p.L50	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Armadillo,superfamily_ARM-type_fold	-	no_errors	RTDR1	HGNC	ENSG00000100218				45	0	0	35	4	10.2564
MMP11	0	genome.wustl.edu	37	22	24125616	24125616	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	22	24125616	24125616	G	A	SNP	MMP11	ENST00000215743	human	ensembl	74_37	+1	known	missense	c.1352	p.R451H	0.313	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP11	HGNC	ENSG00000099953				101	0	0	54	10	15.625
GAS2L1	0	genome.wustl.edu	37	22	29708172	29708172	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	22	29708172	29708172	G	T	SNP	GAS2L1	ENST00000406549	human	ensembl	74_37	+1	putative	missense	c.1051	p.G351C	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L1	HGNC	ENSG00000185340				211	0	0	99	21	17.5
DNAJC13	0	genome.wustl.edu	37	3	132244599	132244599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	132244599	132244599	C	T	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.6206	p.A2069V	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				117	0	0	77	12	13.4831
XPC	0	genome.wustl.edu	37	3	14200141	14200141	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	14200141	14200141	C	T	SNP	XPC	ENST00000285021	human	ensembl	74_37	-1	known	silent	c.1242	p.Q414	0.001	tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767				231	0	0	120	26	17.8082
CPB1	0	genome.wustl.edu	37	3	148545851	148545851	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	148545851	148545851	C	A	SNP	CPB1	ENST00000282957	human	ensembl	74_37	+1	known	missense	c.134	p.A45D	1.000	pfam_Prot_inh_M14A,superfamily_Prot_inh_propept	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPB1	HGNC	ENSG00000153002				82	0	0	55	10	15.3846
IGSF10	0	genome.wustl.edu	37	3	151155396	151155396	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	151155396	151155396	T	C	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.6953	p.E2318G	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				157	0	0	111	12	9.7561
SI	0	genome.wustl.edu	37	3	164783102	164783102	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	164783102	164783102	C	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.754	p.D252Y	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				66	0	0	47	7	12.963
GHSR	0	genome.wustl.edu	37	3	172165569	172165569	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	172165569	172165569	A	G	SNP	GHSR	ENST00000241256	human	ensembl	74_37	-1	known	missense	c.635	p.V212A	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GHS-R,prints_GPCR_Rhodpsn	-	no_errors	GHSR	HGNC	ENSG00000121853				79	0	0	48	9	15.7895
ALG3	0	genome.wustl.edu	37	3	183963008	183963008	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	183963008	183963008	C	A	SNP	ALG3	ENST00000397676	human	ensembl	74_37	-1	known	missense	c.583	p.G195C	0.991	pfam_Glycosyltransferase_ALG3	pfam_Glycosyltransferase_ALG3	-	no_errors	ALG3	HGNC	ENSG00000214160				40	0	0	48	6	11.1111
HIGD1A	0	genome.wustl.edu	37	3	42827591	42827591	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	42827591	42827591	G	T	SNP	HIGD1A	ENST00000452906	human	ensembl	74_37	-1	known	missense	c.203	p.T68N	1.000	pfam_Hypoxia_induced_domain	pfam_Hypoxia_induced_domain	-	no_errors	HIGD1A	HGNC	ENSG00000181061				97	0	0	69	12	14.8148
ENSG00000235236	0	genome.wustl.edu	37	3	49017746	49017746	+	RNA	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	49017746	49017746	T	C	SNP	ENSG00000235236	ENST00000415982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP13-131K19.1	Clone_based_vega_gene	ENSG00000235236				91	0	0	42	19	31.1475
SNTN	0	genome.wustl.edu	37	3	63645450	63645450	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	63645450	63645450	G	A	SNP	SNTN	ENST00000343837	human	ensembl	74_37	+1	known	silent	c.195	p.L65	1.000	NULL	NULL	-	no_errors	SNTN	HGNC	ENSG00000188817				209	0	0	76	48	38.7097
VGLL3	0	genome.wustl.edu	37	3	87027812	87027812	+	Silent	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	3	87027812	87027812	G	T	SNP	VGLL3	ENST00000398399	human	ensembl	74_37	-1	known	silent	c.267	p.V89	1.000	pfam_Vg_Tdu	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538				96	0	0	60	14	18.9189
PDE5A	0	genome.wustl.edu	37	4	120442088	120442088	+	Splice_Site	SNP	A	A	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	120442088	120442088	A	C	SNP	PDE5A	ENST00000354960	human	ensembl	74_37	-1	known	splice_site	c.1905+2	e13+2	1.000	-	-	-	no_errors	PDE5A	HGNC	ENSG00000138735				112	0	0	87	15	14.7059
KIAA1109	0	genome.wustl.edu	37	4	123260416	123260416	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	123260416	123260416	A	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	nonsense	c.12205	p.K4069*	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				102	0	0	59	13	18.0556
ANKRD50	0	genome.wustl.edu	37	4	125590991	125590991	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	125590991	125590991	C	G	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.3441	p.Q1147H	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				265	0	0	158	32	16.8421
PCDH18	0	genome.wustl.edu	37	4	138452108	138452108	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	138452108	138452108	C	A	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	missense	c.1135	p.V379F	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				93	0	0	49	15	23.4375
SCFD2	0	genome.wustl.edu	37	4	53752026	53752026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	53752026	53752026	C	T	SNP	SCFD2	ENST00000401642	human	ensembl	74_37	-1	known	missense	c.1850	p.R617Q	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD2	HGNC	ENSG00000184178				86	0	0	47	5	9.61538
KIT	0	genome.wustl.edu	37	4	55589833	55589833	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	4	55589833	55589833	G	C	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.1315	p.D439H	0.597	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				77	0	0	31	12	27.907
KIF20A	0	genome.wustl.edu	37	5	137521738	137521738	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	137521738	137521738	G	A	SNP	KIF20A	ENST00000394894	human	ensembl	74_37	+1	known	silent	c.2214	p.Q738	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20A	HGNC	ENSG00000112984				42	0	0	32	4	11.1111
CXXC5	0	genome.wustl.edu	37	5	139060694	139060694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	139060694	139060694	G	A	SNP	CXXC5	ENST00000302517	human	ensembl	74_37	+1	known	missense	c.586	p.V196M	0.995	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	CXXC5	HGNC	ENSG00000171604				63	0	0	36	21	36.8421
PCDHA9	0	genome.wustl.edu	37	5	140230060	140230060	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140230060	140230060	G	A	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	silent	c.1980	p.T660	0.947	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				99	0	0	98	22	18.3333
PCDHB1	0	genome.wustl.edu	37	5	140431602	140431602	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140431602	140431602	C	T	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.547	p.R183C	0.058	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				84	0	0	67	9	11.8421
PCDHB3	0	genome.wustl.edu	37	5	140481581	140481581	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140481581	140481581	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1348	p.A450T	0.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205				293	0	0	185	77	29.3893
PCDHB5	0	genome.wustl.edu	37	5	140515027	140515027	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140515027	140515027	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.11	p.A4V	0.004	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				72	0	0	67	9	11.8421
PCDHGA2	0	genome.wustl.edu	37	5	140720421	140720421	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140720421	140720421	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	missense	c.1883	p.T628M	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853				166	0	0	89	49	35.5072
PCDHGB7	0	genome.wustl.edu	37	5	140798932	140798932	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	140798932	140798932	G	A	SNP	PCDHGB7	ENST00000398594	human	ensembl	74_37	+1	known	silent	c.1506	p.S502	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122				139	0	0	100	30	23.0769
GRIA1	0	genome.wustl.edu	37	5	153175110	153175110	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	153175110	153175110	A	G	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.2375	p.Y792C	1.000	pfam_Iontro_glu_rcpt,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				50	0	0	34	4	10.5263
FAM134B	0	genome.wustl.edu	37	5	16477850	16477850	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	16477850	16477850	G	C	SNP	FAM134B	ENST00000306320	human	ensembl	74_37	-1	known	missense	c.921	p.D307E	0.153	NULL	pfam_Reticulon	-	no_errors	FAM134B	HGNC	ENSG00000154153				96	0	0	60	21	25.9259
AMACR	0	genome.wustl.edu	37	5	34008134	34008134	+	RNA	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	34008134	34008134	C	T	SNP	AMACR	ENST00000514195	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	AMACR	HGNC	ENSG00000242110				41	0	0	18	5	21.7391
HCN1	0	genome.wustl.edu	37	5	45262712	45262712	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	45262712	45262712	T	C	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.1984	p.T662A	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				93	0	0	47	13	21.6667
PAPD7	0	genome.wustl.edu	37	5	6752990	6752990	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	5	6752990	6752990	G	A	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.1274	p.R425K	1.000	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941				80	0	0	48	8	14.2857
TBC1D32	0	genome.wustl.edu	37	6	121655563	121655563	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	121655563	121655563	G	T	SNP	TBC1D32	ENST00000464622	human	ensembl	74_37	-1	known	missense	c.14	p.S5Y	0.986	NULL	NULL	-	no_errors	TBC1D32	HGNC	ENSG00000146350				39	0	0	30	5	14.2857
PTPRK	0	genome.wustl.edu	37	6	128326280	128326280	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	128326280	128326280	C	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	nonsense	c.2443	p.E815*	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894				60	0	0	41	5	10.8696
ATXN1	0	genome.wustl.edu	37	6	16326835	16326835	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	16326835	16326835	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	silent	c.1707	p.T569	0.059	superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				73	0	0	90	5	5.26316
PGBD1	0	genome.wustl.edu	37	6	28270052	28270052	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	28270052	28270052	G	A	SNP	PGBD1	ENST00000259883	human	ensembl	74_37	+1	known	silent	c.2421	p.L807	0.063	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,pfscan_SRCR,pfscan_Tscrpt_reg_SCAN	-	no_errors	PGBD1	HGNC	ENSG00000137338				59	0	0	53	11	17.1875
KIFC1	0	genome.wustl.edu	37	6	33373066	33373066	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	33373066	33373066	C	T	SNP	KIFC1	ENST00000428849	human	ensembl	74_37	+1	known	silent	c.1194	p.A398	0.994	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIFC1	HGNC	ENSG00000237649				165	0	0	117	21	15.2174
BTBD9	0	genome.wustl.edu	37	6	38561911	38561911	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	38561911	38561911	C	T	SNP	BTBD9	ENST00000403056	human	ensembl	74_37	-1	known	silent	c.378	p.E126	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826				397	0	0	329	45	12.0321
KIF6	0	genome.wustl.edu	37	6	39398879	39398879	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	39398879	39398879	G	T	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.1704	p.D568E	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627				55	0	0	32	5	13.5135
USP49	0	genome.wustl.edu	37	6	41771588	41771588	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	41771588	41771588	G	T	SNP	USP49	ENST00000373009	human	ensembl	74_37	-1	known	missense	c.1517	p.T506K	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP49	HGNC	ENSG00000164663				122	0	0	137	221	61.7318
ENSG00000271754	0	genome.wustl.edu	37	6	43487420	43487420	+	RNA	SNP	A	A	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	43487420	43487420	A	C	SNP	ENSG00000271754	ENST00000607571	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP3-337H4.9	Clone_based_vega_gene	ENSG00000271754				134	0	0	121	444	78.5841
RUNX2	0	genome.wustl.edu	37	6	45405709	45405709	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	45405709	45405709	C	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	silent	c.810	p.T270	0.923	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				190	0	0	240	20	7.69231
HUS1B	0	genome.wustl.edu	37	6	656555	656555	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	6	656555	656555	G	T	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	missense	c.390	p.H130Q	0.001	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996				56	0	0	20	3	13.0435
NRCAM	0	genome.wustl.edu	37	7	107790220	107790220	+	RNA	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	107790220	107790220	T	C	SNP	NRCAM	ENST00000522550	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.124	-	-	-	no_errors	NRCAM	HGNC	ENSG00000091129				43	0	0	32	10	23.8095
CREB3L2	0	genome.wustl.edu	37	7	137565290	137565290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	137565290	137565290	C	T	SNP	CREB3L2	ENST00000330387	human	ensembl	74_37	-1	known	missense	c.1495	p.A499T	0.774	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3L2	HGNC	ENSG00000182158				37	0	0	30	6	16.6667
DNAH11	0	genome.wustl.edu	37	7	21630827	21630827	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	21630827	21630827	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.2299	p.V767L	0.995	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				46	0	0	43	12	21.8182
GLI3	0	genome.wustl.edu	37	7	42065827	42065827	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	42065827	42065827	C	T	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.1213	p.V405I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				33	0	0	28	5	15.1515
C1GALT1	0	genome.wustl.edu	37	7	7283247	7283247	+	Silent	SNP	T	T	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	7283247	7283247	T	G	SNP	C1GALT1	ENST00000223122	human	ensembl	74_37	+1	known	silent	c.981	p.R327	1.000	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392				170	0	0	129	36	21.8182
KIAA1324L	0	genome.wustl.edu	37	7	86542517	86542517	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	86542517	86542517	T	A	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	nonsense	c.1735	p.R579*	1.000	superfamily_Growth_fac_rcpt_N_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				77	0	0	53	5	8.62069
TAF6	0	genome.wustl.edu	37	7	99711237	99711237	+	Splice_Site	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	99711237	99711237	A	G	SNP	TAF6	ENST00000344095	human	ensembl	74_37	-1	known	splice_site	c.397+2	e3+2	0.997	-	-	-	no_errors	TAF6	HGNC	ENSG00000106290				100	0	0	51	29	36.25
UBR5	0	genome.wustl.edu	37	8	103297906	103297906	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	103297906	103297906	G	A	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	silent	c.5319	p.N1773	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				96	0	0	76	10	11.6279
TNFRSF11B	0	genome.wustl.edu	37	8	119941043	119941043	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	119941043	119941043	T	A	SNP	TNFRSF11B	ENST00000297350	human	ensembl	74_37	-1	known	nonsense	c.526	p.K176*	0.979	pirsf_TNFR_11B,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_11	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761				193	0	0	137	17	11.039
NEFM	0	genome.wustl.edu	37	8	24771915	24771915	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	24771915	24771915	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.609	p.I203	1.000	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				42	0	0	29	6	17.1429
CHRNA2	0	genome.wustl.edu	37	8	27320871	27320871	+	Silent	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	27320871	27320871	G	A	SNP	CHRNA2	ENST00000407991	human	ensembl	74_37	-1	known	silent	c.1089	p.P363	0.981	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA2	HGNC	ENSG00000120903				72	0	0	39	17	30.3571
POTEA	0	genome.wustl.edu	37	8	43197365	43197365	+	RNA	SNP	T	T	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	43197365	43197365	T	C	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877				94	0	0	79	11	12.2222
CRISPLD1	0	genome.wustl.edu	37	8	75927084	75927084	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	75927084	75927084	C	T	SNP	CRISPLD1	ENST00000262207	human	ensembl	74_37	+1	known	missense	c.664	p.R222W	0.873	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD1	HGNC	ENSG00000121005				36	0	0	20	12	37.5
KCNS2	0	genome.wustl.edu	37	8	99441398	99441398	+	Silent	SNP	A	A	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	99441398	99441398	A	G	SNP	KCNS2	ENST00000287042	human	ensembl	74_37	+1	known	silent	c.1191	p.A397	0.093	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv2	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS2	HGNC	ENSG00000156486				163	0	0	113	17	13.0769
OR1L1	0	genome.wustl.edu	37	9	125424489	125424489	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	125424489	125424489	G	T	SNP	OR1L1	ENST00000373686	human	ensembl	74_37	+1	known	missense	c.645	p.Q215H	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L1	HGNC	ENSG00000173679				378	0	0	272	29	9.63455
PCSK5	0	genome.wustl.edu	37	9	78790192	78790192	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	78790192	78790192	C	G	SNP	PCSK5	ENST00000376767	human	ensembl	74_37	+1	known	missense	c.2047	p.R683G	0.006	NULL	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				13	0	0	12	3	20
AGTPBP1	0	genome.wustl.edu	37	9	88207528	88207528	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	88207528	88207528	C	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	74_37	-1	known	missense	c.2551	p.D851Y	1.000	NULL	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049				174	0	0	130	16	10.9589
ROR2	0	genome.wustl.edu	37	9	94487066	94487066	+	Silent	SNP	C	C	G			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	94487066	94487066	C	G	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	silent	c.1710	p.P570	0.013	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				62	0	0	43	8	15.6863
PTCH1	0	genome.wustl.edu	37	9	98232138	98232138	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	98232138	98232138	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	nonsense	c.1804	p.R602*	0.998	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				135	0	0	92	29	23.9669
CT47B1	0	genome.wustl.edu	37	X	120009290	120009290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	X	120009290	120009290	C	T	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	missense	c.235	p.G79R	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				30	0	0	14	14	50
USP26	0	genome.wustl.edu	37	X	132161673	132161673	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	X	132161673	132161673	C	T	SNP	USP26	ENST00000370832	human	ensembl	74_37	-1	known	silent	c.576	p.E192	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588				57	0	0	59	7	10.6061
P2RY10	0	genome.wustl.edu	37	X	78216284	78216284	+	Silent	SNP	C	C	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	X	78216284	78216284	C	T	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	silent	c.267	p.L89	0.972	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				90	0	0	77	30	28.0374
PIK3R3	0	genome.wustl.edu	37	1	46521725	46521725	+	RNA	DEL	T	T	-			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	1	46521725	46521725	T	-	DEL	PIK3R3	ENST00000488808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	PIK3R3	HGNC	ENSG00000117461				15	0	0	8	2	20
KDM2A	0	genome.wustl.edu	37	11	67018079	67018084	+	In_Frame_Del	DEL	GAGGAG	GAGGAG	-			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	GAGGAG	GAGGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	11	67018079	67018084	GAGGAG	-	DEL	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	in_frame_del	c.2578_2583	p.EE863in_frame_del	0.986:0.996:0.994:1.000:1.000:0.998	NULL	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				37	0	0	30	7	18.9189
ENSG00000259479	0	genome.wustl.edu	37	15	45123755	45123756	+	RNA	INS	-	-	C			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	15	45123755	45123756	-	C	INS	ENSG00000259479	ENST00000561384	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.632:0.983	-	-	-	no_errors	CTD-2008A1.2	Clone_based_vega_gene	ENSG00000259479				16	0	0	11	2	15.3846
ACACA	0	genome.wustl.edu	37	17	35696783	35696784	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	35696783	35696784	-	T	INS	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	frame_shift_ins	c.66_65	p.T23fs	1.000:1.000	NULL	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				120	0	0	80	17	17.5258
TP53	0	genome.wustl.edu	37	17	7577606	7577606	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	17	7577606	7577606	A	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.675	p.G226fs	0.044	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				80	0	0	34	15	30.6122
KMT2E	0	genome.wustl.edu	37	7	104715217	104715218	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	7	104715217	104715218	-	A	INS	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	frame_shift_ins	c.684_685	p.S230fs	1.000:1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483				76	0	0	72	12	14.2857
UBR5	0	genome.wustl.edu	37	8	103324612	103324614	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	8	103324612	103324614	AGA	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	in_frame_del	c.2109_2107	p.S703in_frame_del	0.961:1.000:1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				72	0	0	46	18	28.125
BICD2	0	genome.wustl.edu	37	9	95477513	95477514	+	Frame_Shift_Ins	INS	-	-	ACAG			TCGA-BR-8683-01A-11D-2394-08	TCGA-BR-8683-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c0cf96d6-0371-45d9-8e5e-fc12ba2bd5c8	aebed280-af70-496f-a1b4-f441f6e6a82e	9	95477513	95477514	-	ACAG	INS	BICD2	ENST00000356884	human	ensembl	74_37	-1	known	frame_shift_ins	c.2491_2490	p.A830fs	0.943:0.222	NULL	pfam_Bicaudal-D_microtubule-assoc	-	no_errors	BICD2	HGNC	ENSG00000185963				56	0	0	37	4	9.7561
