Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC6A17	0	genome.wustl.edu	37	1	110716597	110716597	+	Silent	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	110716597	110716597	C	A	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	silent	c.447	p.V149	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106				64	0	0	53	5	8.62069
SLC16A4	0	genome.wustl.edu	37	1	110925481	110925481	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	110925481	110925481	G	A	SNP	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	silent	c.195	p.I65	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679				34	0	0	40	8	16.6667
HIPK1	0	genome.wustl.edu	37	1	114484035	114484035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	114484035	114484035	G	A	SNP	HIPK1	ENST00000369558	human	ensembl	74_37	+1	known	missense	c.1030	p.V344I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK1	HGNC	ENSG00000163349				88	0	0	59	12	16.9014
HAO2	0	genome.wustl.edu	37	1	119927488	119927488	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	119927488	119927488	C	T	SNP	HAO2	ENST00000361035	human	ensembl	74_37	+1	known	nonsense	c.412	p.R138*	0.235	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882				58	0	0	31	6	16.2162
S100A13	0	genome.wustl.edu	37	1	153598898	153598898	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	153598898	153598898	G	A	SNP	S100A13	ENST00000339556	human	ensembl	74_37	-1	known	silent	c.51	p.V17	0.978	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub	-	no_errors	S100A13	HGNC	ENSG00000189171				96	0	0	64	4	5.88235
OR6Y1	0	genome.wustl.edu	37	1	158516944	158516944	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	158516944	158516944	G	T	SNP	OR6Y1	ENST00000302617	human	ensembl	74_37	-1	known	missense	c.952	p.Q318K	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6Y1	HGNC	ENSG00000197532				32	0	0	22	5	18.5185
PVRL4	0	genome.wustl.edu	37	1	161044471	161044471	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	161044471	161044471	G	A	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	silent	c.930	p.S310	0.932	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				34	0	0	20	3	13.0435
FCGR2A	0	genome.wustl.edu	37	1	161487964	161487964	+	RNA	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	161487964	161487964	T	C	SNP	FCGR2A	ENST00000461298	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	FCGR2A	HGNC	ENSG00000143226				23	0	0	18	4	18.1818
TOR1AIP2	0	genome.wustl.edu	37	1	179815828	179815828	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	179815828	179815828	T	A	SNP	TOR1AIP2	ENST00000367612	human	ensembl	74_37	-1	known	missense	c.791	p.D264V	1.000	pfam_Lamina-ass_polypeptide_CLAP1C	pfam_Lamina-ass_polypeptide_CLAP1C	-	no_errors	TOR1AIP2	HGNC	ENSG00000169905				49	0	0	30	4	11.7647
KCNH1	0	genome.wustl.edu	37	1	210857160	210857160	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	210857160	210857160	G	A	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	silent	c.2433	p.H811	0.323	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473				68	0	0	63	6	8.69565
PROX1	0	genome.wustl.edu	37	1	214170542	214170542	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	214170542	214170542	C	T	SNP	PROX1	ENST00000261454	human	ensembl	74_37	+1	known	nonsense	c.664	p.Q222*	1.000	pfam_Homeo_prospero_dom	pfam_Homeo_prospero_dom,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707				31	0	0	22	3	12
TRIM67	0	genome.wustl.edu	37	1	231335945	231335945	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	231335945	231335945	G	A	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	missense	c.1315	p.G439R	1.000	smart_Bbox_C	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				70	0	0	60	4	6.25
OR2C3	0	genome.wustl.edu	37	1	247695143	247695143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	247695143	247695143	C	T	SNP	OR2C3	ENST00000366487	human	ensembl	74_37	-1	known	missense	c.671	p.R224Q	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2C3	HGNC	ENSG00000196242				52	0	0	38	3	7.31707
OR2L8	0	genome.wustl.edu	37	1	248112179	248112179	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	248112179	248112179	C	A	SNP	OR2L8	ENST00000357191	human	ensembl	74_37	+1	known	missense	c.20	p.T7K	0.055	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2L8	HGNC	ENSG00000196936				51	0	0	33	3	8.33333
OR2M5	0	genome.wustl.edu	37	1	248308649	248308649	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	248308649	248308649	T	C	SNP	OR2M5	ENST00000366476	human	ensembl	74_37	+1	known	missense	c.200	p.F67S	0.167	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M5	HGNC	ENSG00000162727				180	0	0	174	10	5.43478
SNHG12	0	genome.wustl.edu	37	1	28905175	28905175	+	RNA	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	28905175	28905175	C	T	SNP	SNHG12	ENST00000475441	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNHG12	HGNC	ENSG00000197989				37	0	0	23	8	25.8065
MROH7-TTC4	0	genome.wustl.edu	37	1	55119744	55119744	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	55119744	55119744	G	C	SNP	MROH7-TTC4	ENST00000414150	human	ensembl	74_37	+1	known	missense	c.1145	p.S382T	0.000	NULL	superfamily_ARM-type_fold	-	no_errors	MROH7-TTC4	HGNC	ENSG00000271723				19	0	0	17	3	15
DNAJC6	0	genome.wustl.edu	37	1	65855119	65855119	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	65855119	65855119	G	A	SNP	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	silent	c.1374	p.T458	0.770	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				23	0	0	29	4	12.1212
SH3GLB1	0	genome.wustl.edu	37	1	87188235	87188235	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	87188235	87188235	T	G	SNP	SH3GLB1	ENST00000482504	human	ensembl	74_37	+1	known	missense	c.356	p.I119S	1.000	pfam_BAR_dom,pfam_BAR_dom-cont,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB1	HGNC	ENSG00000097033				55	0	0	48	15	23.8095
ABCA4	0	genome.wustl.edu	37	1	94568687	94568687	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	94568687	94568687	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	nonsense	c.454	p.R152*	0.996	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				65	0	0	47	4	7.84314
KNDC1	0	genome.wustl.edu	37	10	135013926	135013926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	135013926	135013926	G	A	SNP	KNDC1	ENST00000368572	human	ensembl	74_37	+1	known	missense	c.2957	p.R986H	0.025	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_Kinase-like_dom,smart_KIND,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	KNDC1	HGNC	ENSG00000171798				13	0	0	6	3	33.3333
ANKRD30A	0	genome.wustl.edu	37	10	37490214	37490214	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	37490214	37490214	C	A	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.2662	p.H888N	0.001	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513				34	0	0	22	3	12
ZNF33A	0	genome.wustl.edu	37	10	38344006	38344006	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	38344006	38344006	C	G	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	missense	c.972	p.H324Q	0.014	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				52	0	0	38	9	19.1489
ZNF33A	0	genome.wustl.edu	37	10	38344156	38344156	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	38344156	38344156	T	G	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	missense	c.1122	p.D374E	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				39	0	0	24	5	17.2414
ZNF33A	0	genome.wustl.edu	37	10	38344180	38344180	+	Silent	SNP	A	A	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	38344180	38344180	A	G	SNP	ZNF33A	ENST00000432900	human	ensembl	74_37	+1	known	silent	c.1146	p.Q382	0.987	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF33A	HGNC	ENSG00000189180				41	0	0	19	4	17.3913
BMS1	0	genome.wustl.edu	37	10	43287996	43287996	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	43287996	43287996	A	C	SNP	BMS1	ENST00000374518	human	ensembl	74_37	+1	known	missense	c.835	p.K279Q	1.000	pfam_AARP2CN,superfamily_P-loop_NTPase,smart_AARP2CN	pfam_BMS1_TSR1_C,pfam_AARP2CN,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_AARP2CN	-	no_errors	BMS1	HGNC	ENSG00000165733				63	0	0	41	4	8.88889
PCDH15	0	genome.wustl.edu	37	10	55698629	55698629	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	55698629	55698629	C	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.3319	p.V1107F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				29	0	0	33	7	17.5
ASB13	0	genome.wustl.edu	37	10	5693205	5693205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	5693205	5693205	G	A	SNP	ASB13	ENST00000357700	human	ensembl	74_37	-1	known	missense	c.353	p.A118V	0.986	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB13	HGNC	ENSG00000196372				66	0	0	41	7	14.5833
FBXO18	0	genome.wustl.edu	37	10	5956183	5956183	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	10	5956183	5956183	G	A	SNP	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	silent	c.1500	p.L500	1.000	superfamily_P-loop_NTPase	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452				67	0	0	46	8	14.8148
ATF4P4	0	genome.wustl.edu	37	11	113660985	113660985	+	RNA	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	113660985	113660985	G	A	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167				19	0	0	14	3	17.6471
NFRKB	0	genome.wustl.edu	37	11	129758493	129758493	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	129758493	129758493	G	T	SNP	NFRKB	ENST00000524794	human	ensembl	74_37	-1	known	missense	c.372	p.F124L	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322				46	0	0	38	5	11.6279
KRTAP5-2	0	genome.wustl.edu	37	11	1619193	1619193	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	1619193	1619193	C	T	SNP	KRTAP5-2	ENST00000412090	human	ensembl	74_37	-1	known	silent	c.288	p.G96	0.002	NULL	NULL	-	no_errors	KRTAP5-2	HGNC	ENSG00000205867				182	1	0.546448	131	12	8.39161
PTPN5	0	genome.wustl.edu	37	11	18754846	18754846	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	18754846	18754846	C	T	SNP	PTPN5	ENST00000358540	human	ensembl	74_37	-1	known	missense	c.1154	p.R385H	1.000	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pirsf_Tyr_Pase_rcpt_R/non-rcpt_5,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN5	HGNC	ENSG00000110786				96	0	0	57	6	9.52381
CKAP5	0	genome.wustl.edu	37	11	46774874	46774874	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	46774874	46774874	C	G	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	missense	c.5043	p.Q1681H	1.000	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				36	0	0	28	9	24.3243
OR51A4	0	genome.wustl.edu	37	11	4967678	4967678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	4967678	4967678	G	A	SNP	OR51A4	ENST00000380373	human	ensembl	74_37	-1	known	missense	c.653	p.S218F	0.553	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497				25	0	0	21	6	22.2222
OR51B5	0	genome.wustl.edu	37	11	5364235	5364235	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	5364235	5364235	G	T	SNP	OR51B5	ENST00000300773	human	ensembl	74_37	-1	known	missense	c.520	p.H174N	0.866	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180				54	0	0	49	9	15.5172
OR4A16	0	genome.wustl.edu	37	11	55111534	55111534	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	55111534	55111534	G	A	SNP	OR4A16	ENST00000314721	human	ensembl	74_37	+1	known	silent	c.858	p.S286	0.103	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A16	HGNC	ENSG00000181961				21	0	0	9	3	25
OR4C11	0	genome.wustl.edu	37	11	55371590	55371590	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	55371590	55371590	T	C	SNP	OR4C11	ENST00000302231	human	ensembl	74_37	-1	known	missense	c.260	p.K87R	0.057	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C11	HGNC	ENSG00000172188				43	0	0	48	12	20
OR5R1	0	genome.wustl.edu	37	11	56185309	56185309	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	56185309	56185309	T	G	SNP	OR5R1	ENST00000312253	human	ensembl	74_37	-1	known	missense	c.400	p.T134P	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5R1	HGNC	ENSG00000174942				42	0	0	54	10	15.625
OR9G4	0	genome.wustl.edu	37	11	56510658	56510658	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	56510658	56510658	G	A	SNP	OR9G4	ENST00000302957	human	ensembl	74_37	-1	known	silent	c.630	p.Y210	0.104	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9G4	HGNC	ENSG00000172457				23	0	0	12	10	45.4545
ANKRD42	0	genome.wustl.edu	37	11	82935914	82935914	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	82935914	82935914	G	T	SNP	ANKRD42	ENST00000393392	human	ensembl	74_37	+1	known	nonsense	c.520	p.E174*	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD42	HGNC	ENSG00000137494				41	0	0	24	4	14.2857
DLG2	0	genome.wustl.edu	37	11	83810063	83810063	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	83810063	83810063	C	A	SNP	DLG2	ENST00000376104	human	ensembl	74_37	-1	known	missense	c.652	p.A218S	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,pfam_L27_1,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG2	HGNC	ENSG00000150672				25	0	0	25	2	7.40741
GPR83	0	genome.wustl.edu	37	11	94134339	94134339	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	94134339	94134339	G	A	SNP	GPR83	ENST00000243673	human	ensembl	74_37	-1	known	silent	c.75	p.D25	0.001	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GPR83	HGNC	ENSG00000123901				50	0	0	36	9	20
SBF2	0	genome.wustl.edu	37	11	9801995	9801995	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	11	9801995	9801995	G	T	SNP	SBF2	ENST00000256190	human	ensembl	74_37	-1	known	missense	c.5520	p.D1840E	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_Pleckstrin_homology,pfam_GRAM,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF2	HGNC	ENSG00000133812				27	0	0	23	3	11.5385
ANO4	0	genome.wustl.edu	37	12	101336287	101336287	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	12	101336287	101336287	G	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.430	p.A144S	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572				69	0	0	65	6	8.4507
CIT	0	genome.wustl.edu	37	12	120150501	120150501	+	Splice_Site	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	12	120150501	120150501	C	T	SNP	CIT	ENST00000261833	human	ensembl	74_37	-1	known	splice_site	c.4454-1	e34-1	1.000	-	-	-	no_errors	CIT	HGNC	ENSG00000122966				25	0	0	19	6	24
TMEM132D	0	genome.wustl.edu	37	12	129822189	129822189	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	12	129822189	129822189	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1289	p.P430L	0.856	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				126	0	0	88	6	6.38298
WNT10B	0	genome.wustl.edu	37	12	49364277	49364277	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	12	49364277	49364277	C	T	SNP	WNT10B	ENST00000301061	human	ensembl	74_37	-1	known	silent	c.36	p.S12	0.998	NULL	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt10	-	no_errors	WNT10B	HGNC	ENSG00000169884				19	0	0	11	3	21.4286
TPH2	0	genome.wustl.edu	37	12	72366481	72366481	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	12	72366481	72366481	C	T	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.791	p.S264F	0.997	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				137	0	0	156	11	6.58683
FREM2	0	genome.wustl.edu	37	13	39262163	39262163	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	13	39262163	39262163	C	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.682	p.P228T	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				22	0	0	20	4	16.6667
RALGAPA1	0	genome.wustl.edu	37	14	36096891	36096891	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	36096891	36096891	C	G	SNP	RALGAPA1	ENST00000258840	human	ensembl	74_37	-1	known	missense	c.4885	p.G1629R	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA1	HGNC	ENSG00000174373				12	0	0	8	5	38.4615
LRR1	0	genome.wustl.edu	37	14	50065787	50065787	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	50065787	50065787	T	G	SNP	LRR1	ENST00000298288	human	ensembl	74_37	+1	known	missense	c.49	p.L17V	0.034	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRR1	HGNC	ENSG00000165501				9	0	0	10	3	23.0769
DCAF4	0	genome.wustl.edu	37	14	73425480	73425480	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	73425480	73425480	C	T	SNP	DCAF4	ENST00000358377	human	ensembl	74_37	+1	known	silent	c.1455	p.V485	0.871	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4	HGNC	ENSG00000119599				62	0	0	54	9	14.2857
ABCD4	0	genome.wustl.edu	37	14	74757026	74757026	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	74757026	74757026	C	T	SNP	ABCD4	ENST00000356924	human	ensembl	74_37	-1	known	missense	c.1295	p.R432Q	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD4	HGNC	ENSG00000119688				83	0	0	64	10	13.5135
NEK9	0	genome.wustl.edu	37	14	75573236	75573236	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	75573236	75573236	C	T	SNP	NEK9	ENST00000238616	human	ensembl	74_37	-1	known	silent	c.1497	p.K499	0.991	superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_RCC1/BLIP-II,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK9	HGNC	ENSG00000119638				67	0	0	63	4	5.97015
UNC79	0	genome.wustl.edu	37	14	94088869	94088869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	14	94088869	94088869	C	T	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.5356	p.H1786Y	0.111	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				55	0	0	57	4	6.55738
TJP1	0	genome.wustl.edu	37	15	30011254	30011254	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	15	30011254	30011254	G	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.3092	p.P1031Q	0.992	NULL	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067				91	0	0	61	24	28.2353
ARHGAP11B	0	genome.wustl.edu	37	15	30938483	30938483	+	RNA	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	15	30938483	30938483	T	C	SNP	ARHGAP11B	ENST00000566548	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.713	-	-	-	no_errors	ARHGAP11B	HGNC	ENSG00000187951				12	0	0	8	3	27.2727
DUOX1	0	genome.wustl.edu	37	15	45433197	45433197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	15	45433197	45433197	C	T	SNP	DUOX1	ENST00000561220	human	ensembl	74_37	+1	known	missense	c.1321	p.H441Y	0.095	pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	DUOX1	HGNC	ENSG00000137857				85	0	0	58	5	7.93651
ZNF768	0	genome.wustl.edu	37	16	30536468	30536468	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	16	30536468	30536468	G	A	SNP	ZNF768	ENST00000380412	human	ensembl	74_37	-1	known	silent	c.993	p.Y331	0.995	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_RNA_pol_II_repeat_euk,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF768	HGNC	ENSG00000169957				48	0	0	37	3	7.5
SALL1	0	genome.wustl.edu	37	16	51173642	51173642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	16	51173642	51173642	C	T	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.2491	p.D831N	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				76	0	0	79	9	10.2273
POLR2C	0	genome.wustl.edu	37	16	57503205	57503205	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	16	57503205	57503205	G	A	SNP	POLR2C	ENST00000219252	human	ensembl	74_37	+1	known	silent	c.387	p.P129	1.000	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978				27	0	0	18	6	25
PDP2	0	genome.wustl.edu	37	16	66919712	66919712	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	16	66919712	66919712	G	A	SNP	PDP2	ENST00000311765	human	ensembl	74_37	+1	known	missense	c.1525	p.D509N	1.000	superfamily_PP2C-like_dom,smart_PP2C-like_dom	pfam_PP2C-like_dom,superfamily_PP2C-like_dom,smart_PP2C-like_dom	-	no_errors	PDP2	HGNC	ENSG00000172840				33	0	0	25	3	10.7143
CDH1	0	genome.wustl.edu	37	16	68862157	68862157	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	16	68862157	68862157	C	T	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.2245	p.R749W	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				53	0	0	49	11	18.3333
MYH8	0	genome.wustl.edu	37	17	10300223	10300223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	10300223	10300223	G	A	SNP	MYH8	ENST00000403437	human	ensembl	74_37	-1	known	missense	c.4259	p.T1420M	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020				22	0	0	28	9	24.3243
MYH2	0	genome.wustl.edu	37	17	10427134	10427134	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	10427134	10427134	T	C	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	missense	c.5243	p.E1748G	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414				50	0	0	41	10	19.6078
MYOCD	0	genome.wustl.edu	37	17	12656558	12656558	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	12656558	12656558	G	T	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.1953	p.L651F	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				61	0	0	40	8	16.6667
EPN2	0	genome.wustl.edu	37	17	19235245	19235245	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	19235245	19235245	C	T	SNP	EPN2	ENST00000314728	human	ensembl	74_37	+1	known	silent	c.1491	p.V497	0.000	NULL	pfam_Epsin_dom_N,pfam_ANTH_dom,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_Ubiquitin-int_motif,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN2	HGNC	ENSG00000072134				101	0	0	78	9	10.3448
ACACA	0	genome.wustl.edu	37	17	35545362	35545362	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	35545362	35545362	C	T	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.4631	p.R1544H	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				36	0	0	26	4	13.3333
ZNF594	0	genome.wustl.edu	37	17	5085395	5085395	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	5085395	5085395	C	T	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	nonsense	c.2157	p.W719*	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626				68	0	0	73	8	9.87654
SLC39A11	0	genome.wustl.edu	37	17	70943979	70943979	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	70943979	70943979	C	T	SNP	SLC39A11	ENST00000542342	human	ensembl	74_37	-1	known	silent	c.342	p.L114	0.950	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A11	HGNC	ENSG00000133195				55	0	0	57	7	10.9375
USH1G	0	genome.wustl.edu	37	17	72916569	72916569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	72916569	72916569	G	A	SNP	USH1G	ENST00000319642	human	ensembl	74_37	-1	known	missense	c.362	p.A121V	1.000	smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	USH1G	HGNC	ENSG00000182040				52	0	0	39	5	11.3636
EXOC7	0	genome.wustl.edu	37	17	74087260	74087260	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	74087260	74087260	C	T	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	missense	c.865	p.G289R	1.000	superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473				111	0	0	95	6	5.94059
ENPP7	0	genome.wustl.edu	37	17	77709072	77709072	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	17	77709072	77709072	G	A	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	silent	c.630	p.P210	0.000	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				47	0	0	26	4	13.3333
DNM2	0	genome.wustl.edu	37	19	10906869	10906869	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	10906869	10906869	C	T	SNP	DNM2	ENST00000355667	human	ensembl	74_37	+1	known	silent	c.1329	p.T443	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM2	HGNC	ENSG00000079805				83	0	0	55	4	6.77966
KIRREL2	0	genome.wustl.edu	37	19	36351817	36351817	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	36351817	36351817	C	T	SNP	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	missense	c.935	p.P312L	0.995	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				34	0	0	21	3	12.5
ZNF420	0	genome.wustl.edu	37	19	37619007	37619007	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	37619007	37619007	T	C	SNP	ZNF420	ENST00000337995	human	ensembl	74_37	+1	known	missense	c.1114	p.F372L	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF420	HGNC	ENSG00000197050				49	0	0	40	6	13.0435
IFNL3	0	genome.wustl.edu	37	19	39734787	39734787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	39734787	39734787	C	T	SNP	IFNL3	ENST00000413851	human	ensembl	74_37	-1	known	missense	c.269	p.R90H	0.669	NULL	NULL	-	no_errors	IFNL3	HGNC	ENSG00000197110				42	0	0	32	4	11.1111
ZNF780A	0	genome.wustl.edu	37	19	40589025	40589025	+	Silent	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	40589025	40589025	G	T	SNP	ZNF780A	ENST00000455521	human	ensembl	74_37	-1	known	silent	c.129	p.I43	0.081	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780A	HGNC	ENSG00000197782				60	0	0	62	6	8.82353
ARHGEF1	0	genome.wustl.edu	37	19	42396407	42396407	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	42396407	42396407	C	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	silent	c.375	p.L125	0.742	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				108	0	0	82	8	8.88889
PNMAL1	0	genome.wustl.edu	37	19	46973369	46973369	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	46973369	46973369	C	T	SNP	PNMAL1	ENST00000313683	human	ensembl	74_37	-1	known	silent	c.924	p.A308	0.000	NULL	NULL	-	no_errors	PNMAL1	HGNC	ENSG00000182013				113	0	0	86	9	9.47368
PIH1D1	0	genome.wustl.edu	37	19	49954783	49954783	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	49954783	49954783	T	C	SNP	PIH1D1	ENST00000262265	human	ensembl	74_37	-1	known	missense	c.49	p.I17V	0.036	NULL	pfam_PIH	-	no_errors	PIH1D1	HGNC	ENSG00000104872				113	0	0	66	11	14.2857
PTOV1	0	genome.wustl.edu	37	19	50358107	50358107	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	50358107	50358107	C	T	SNP	PTOV1	ENST00000391842	human	ensembl	74_37	+1	known	nonsense	c.412	p.Q138*	0.996	pfam_Mediator_Med25	pfam_Mediator_Med25	-	no_errors	PTOV1	HGNC	ENSG00000104960				27	0	0	34	3	8.10811
KIR2DL4	0	genome.wustl.edu	37	19	55325193	55325193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	55325193	55325193	G	T	SNP	KIR2DL4	ENST00000396284	human	ensembl	74_37	+1	known	missense	c.920	p.R307M	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013				59	0	0	48	5	9.43396
HSPBP1	0	genome.wustl.edu	37	19	55790947	55790947	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	55790947	55790947	G	A	SNP	HSPBP1	ENST00000255631	human	ensembl	74_37	-1	known	silent	c.30	p.R10	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265				8	0	0	2	3	60
ZNF549	0	genome.wustl.edu	37	19	58049391	58049391	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	58049391	58049391	C	T	SNP	ZNF549	ENST00000376233	human	ensembl	74_37	+1	known	missense	c.1019	p.S340L	0.010	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF549	HGNC	ENSG00000121406				47	0	0	36	7	16.2791
EVI5L	0	genome.wustl.edu	37	19	7911558	7911558	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	7911558	7911558	C	A	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	+1	known	missense	c.130	p.Q44K	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459				30	0	0	10	3	23.0769
PRAM1	0	genome.wustl.edu	37	19	8555622	8555622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	19	8555622	8555622	C	T	SNP	PRAM1	ENST00000423345	human	ensembl	74_37	-1	known	missense	c.1762	p.V588I	0.999	superfamily_SH3_domain	superfamily_SH3_domain	-	no_errors	PRAM1	HGNC	ENSG00000133246				23	0	0	16	3	15.7895
NPAS2	0	genome.wustl.edu	37	2	101606898	101606898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	101606898	101606898	C	T	SNP	NPAS2	ENST00000542504	human	ensembl	74_37	+1	known	missense	c.2203	p.R735W	0.903	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	NPAS2	HGNC	ENSG00000170485				39	0	0	36	4	10
GALNT13	0	genome.wustl.edu	37	2	155099285	155099285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	155099285	155099285	C	T	SNP	GALNT13	ENST00000409237	human	ensembl	74_37	+1	known	missense	c.553	p.R185C	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT13	HGNC	ENSG00000144278				17	0	0	12	3	20
TTN	0	genome.wustl.edu	37	2	179585229	179585229	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	179585229	179585229	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.19528	p.H6510N	0.999	pfam_Ig_I-set,pfam_Ig_V-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				17	0	0	19	5	20.8333
PIKFYVE	0	genome.wustl.edu	37	2	209190439	209190439	+	Silent	SNP	T	T	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	209190439	209190439	T	A	SNP	PIKFYVE	ENST00000264380	human	ensembl	74_37	+1	known	silent	c.2904	p.P968	0.203	NULL	pfam_PInositol-4-P-5-kinase_core,pfam_Cpn60/TCP-1,pfam_DEP_dom,pfam_Znf_FYVE,superfamily_GroEL-like_apical_dom,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,smart_DEP_dom,smart_PInositol-4P-5-kinase_core_sub,pfscan_DEP_dom,pfscan_Znf_FYVE-rel	-	no_errors	PIKFYVE	HGNC	ENSG00000115020				50	0	0	30	4	11.7647
UGT1A1	0	genome.wustl.edu	37	2	234526744	234526744	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	234526744	234526744	C	T	SNP	UGT1A1	ENST00000373450	human	ensembl	74_37	+1	known	nonsense	c.391	p.R131*	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A1	HGNC	ENSG00000241635				72	0	0	46	3	6.12245
TTC31	0	genome.wustl.edu	37	2	74719180	74719180	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	74719180	74719180	C	A	SNP	TTC31	ENST00000233623	human	ensembl	74_37	+1	novel	missense	c.926	p.A309E	1.000	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC31	HGNC	ENSG00000115282				34	0	0	19	4	17.3913
ATOH8	0	genome.wustl.edu	37	2	85981537	85981537	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	85981537	85981537	G	A	SNP	ATOH8	ENST00000306279	human	ensembl	74_37	+1	known	silent	c.225	p.P75	0.779	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH8	HGNC	ENSG00000168874				25	0	0	11	4	26.6667
LYG2	0	genome.wustl.edu	37	2	99861777	99861777	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	99861777	99861777	G	T	SNP	LYG2	ENST00000333017	human	ensembl	74_37	-1	known	missense	c.329	p.S110Y	0.001	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	pfam_TGlycosylase-like_SLT,superfamily_Lysozyme-like_dom,pirsf_Glyco_hydro_23,prints_Glyco_hydro_23	-	no_errors	LYG2	HGNC	ENSG00000185674				40	0	0	37	5	11.9048
VPS16	0	genome.wustl.edu	37	20	2843363	2843363	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	20	2843363	2843363	C	G	SNP	VPS16	ENST00000380443	human	ensembl	74_37	+1	known	missense	c.172	p.L58V	1.000	NULL	pfam_Vps16_C,pfam_Vps16_N	-	no_errors	VPS16	HGNC	ENSG00000215305				27	0	0	25	3	10.7143
NCOA6	0	genome.wustl.edu	37	20	33329879	33329879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	20	33329879	33329879	C	T	SNP	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	missense	c.4181	p.S1394N	0.139	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646				49	0	0	37	10	21.2766
SLC52A3	0	genome.wustl.edu	37	20	741724	741724	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	20	741724	741724	G	A	SNP	SLC52A3	ENST00000217254	human	ensembl	74_37	-1	known	silent	c.1356	p.N452	1.000	NULL	pfam_Endogenous_retrovirus_rcpt	-	no_errors	SLC52A3	HGNC	ENSG00000101276				12	0	0	11	5	31.25
GRIK1	0	genome.wustl.edu	37	21	31062113	31062113	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	21	31062113	31062113	G	T	SNP	GRIK1	ENST00000535441	human	ensembl	74_37	-1	known	missense	c.479	p.A160E	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK1	HGNC	ENSG00000171189				97	0	0	74	8	9.7561
KRTAP19-1	0	genome.wustl.edu	37	21	31852625	31852625	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	21	31852625	31852625	G	A	SNP	KRTAP19-1	ENST00000390689	human	ensembl	74_37	-1	known	silent	c.12	p.Y4	0.397	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-1	HGNC	ENSG00000184351				113	0	0	69	16	18.8235
OR11H1	0	genome.wustl.edu	37	22	16449536	16449536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	22	16449536	16449536	G	A	SNP	OR11H1	ENST00000252835	human	ensembl	74_37	-1	known	missense	c.269	p.S90F	0.146	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H1	HGNC	ENSG00000130538				25	0	0	17	4	19.0476
YPEL1	0	genome.wustl.edu	37	22	22057675	22057675	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	22	22057675	22057675	G	A	SNP	YPEL1	ENST00000339468	human	ensembl	74_37	-1	known	missense	c.254	p.T85M	1.000	pfam_Yippee/Mis18	pfam_Yippee/Mis18	-	no_errors	YPEL1	HGNC	ENSG00000100027				56	0	0	46	11	19.2982
EP300	0	genome.wustl.edu	37	22	41572973	41572973	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	22	41572973	41572973	G	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.5258	p.C1753F	1.000	pfam_Znf_TAZ,superfamily_Znf_TAZ,smart_Znf_TAZ,pfscan_Znf_TAZ	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				33	0	0	29	3	9.375
CERK	0	genome.wustl.edu	37	22	47091193	47091193	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	22	47091193	47091193	G	A	SNP	CERK	ENST00000216264	human	ensembl	74_37	-1	known	silent	c.963	p.S321	0.136	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422				33	0	0	22	3	12
TYMP	0	genome.wustl.edu	37	22	50967595	50967595	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	22	50967595	50967595	G	A	SNP	TYMP	ENST00000252029	human	ensembl	74_37	-1	known	silent	c.387	p.L129	0.998	pfam_Glycosyl_Trfase_fam3,superfamily_Glycosyl_Trfase_fam3,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	pfam_Glycosyl_Trfase_fam3,pfam_Glycosyl_Trfase_fam3_N_dom,pfam_PYNP_C,superfamily_Glycosyl_Trfase_fam3,superfamily_PYNP_C,superfamily_Glycosyl_Trfase_fam3_N_dom,smart_PYNP_C,pirsf_Pyrmidine_PPase,tigrfam_Pyrmidine_PPas_bac/euk	-	no_errors	TYMP	HGNC	ENSG00000025708				60	0	0	31	5	13.8889
ACAD9	0	genome.wustl.edu	37	3	128598625	128598625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	128598625	128598625	C	T	SNP	ACAD9	ENST00000308982	human	ensembl	74_37	+1	known	missense	c.91	p.R31C	0.956	NULL	pfam_AcylCo_DH/oxidase_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_AcylCo_DH/oxidase_C	-	no_errors	ACAD9	HGNC	ENSG00000177646				49	0	0	38	15	28.3019
PCCB	0	genome.wustl.edu	37	3	136035904	136035904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	136035904	136035904	C	T	SNP	PCCB	ENST00000251654	human	ensembl	74_37	+1	known	missense	c.1088	p.S363L	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054				51	0	0	57	4	6.55738
WNT7A	0	genome.wustl.edu	37	3	13860757	13860757	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	13860757	13860757	C	T	SNP	WNT7A	ENST00000285018	human	ensembl	74_37	-1	known	missense	c.734	p.R245H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764				68	0	0	47	4	7.84314
ATR	0	genome.wustl.edu	37	3	142275392	142275392	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	142275392	142275392	C	T	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	silent	c.1911	p.V637	0.997	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				37	0	0	25	11	30.5556
PIK3CA	0	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	178916876	178916876	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.263	p.R88Q	1.000	pfam_PI3K_adapt-bd_dom,smart_PI3K_adapt-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				51	0	0	31	18	36.7347
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				22	0	0	17	2	10.5263
KCNH8	0	genome.wustl.edu	37	3	19295169	19295169	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	19295169	19295169	G	T	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.100	p.A34S	1.000	superfamily_PAS	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				81	0	0	48	5	9.43396
KCNH8	0	genome.wustl.edu	37	3	19498312	19498312	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	19498312	19498312	G	A	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	silent	c.1878	p.K626	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960				37	0	0	28	2	6.66667
EBLN2	0	genome.wustl.edu	37	3	73111500	73111500	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	3	73111500	73111500	G	T	SNP	EBLN2	ENST00000533473	human	ensembl	74_37	+1	known	missense	c.268	p.A90S	0.002	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	pfam_P40_nucleoprot_BD-vir,superfamily_P40_nucleoprot_BD-vir	-	no_errors	EBLN2	HGNC	ENSG00000255423				8	0	0	4	4	50
FAT4	0	genome.wustl.edu	37	4	126411905	126411905	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	4	126411905	126411905	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.13928	p.R4643H	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				29	0	0	24	3	11.1111
POU4F2	0	genome.wustl.edu	37	4	147561227	147561227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	4	147561227	147561227	C	T	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.497	p.A166V	0.997	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				20	0	0	15	4	21.0526
PCDH7	0	genome.wustl.edu	37	4	30724035	30724035	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	4	30724035	30724035	C	T	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.991	p.R331C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851				35	0	0	25	3	10.7143
RGS12	0	genome.wustl.edu	37	4	3430429	3430429	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	4	3430429	3430429	G	T	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	nonsense	c.3556	p.E1186*	1.000	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				19	0	0	21	2	8.69565
CTNND2	0	genome.wustl.edu	37	5	11111072	11111072	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	5	11111072	11111072	C	T	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	silent	c.2361	p.T787	0.032	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				92	0	0	76	10	11.6279
DMXL1	0	genome.wustl.edu	37	5	118470009	118470009	+	Silent	SNP	A	A	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	5	118470009	118470009	A	G	SNP	DMXL1	ENST00000539542	human	ensembl	74_37	+1	known	silent	c.2301	p.G767	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC	ENSG00000172869				57	0	0	40	6	13.0435
HIVEP2	0	genome.wustl.edu	37	6	143074616	143074616	+	Silent	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	143074616	143074616	C	T	SNP	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	silent	c.6969	p.E2323	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				35	0	0	25	5	16.6667
PLEKHG1	0	genome.wustl.edu	37	6	151130381	151130381	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	151130381	151130381	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	silent	c.1053	p.T351	0.002	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				65	0	0	51	8	13.5593
HLA-J	0	genome.wustl.edu	37	6	29976041	29976041	+	RNA	SNP	T	T	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	29976041	29976041	T	C	SNP	HLA-J	ENST00000462773	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HLA-J	HGNC	ENSG00000204622				49	0	0	42	3	6.66667
CLIC1	0	genome.wustl.edu	37	6	31698669	31698669	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	31698669	31698669	C	T	SNP	CLIC1	ENST00000375779	human	ensembl	74_37	-1	known	missense	c.676	p.D226N	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC1	HGNC	ENSG00000213719				32	0	0	28	2	6.66667
NOTCH4	0	genome.wustl.edu	37	6	32163554	32163554	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	32163554	32163554	C	G	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.5672	p.G1891A	0.034	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				12	0	0	14	6	30
TULP1	0	genome.wustl.edu	37	6	35477060	35477060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	35477060	35477060	C	T	SNP	TULP1	ENST00000229771	human	ensembl	74_37	-1	known	missense	c.748	p.E250K	0.986	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C	-	no_errors	TULP1	HGNC	ENSG00000112041				154	0	0	145	8	5.22876
GPR63	0	genome.wustl.edu	37	6	97246870	97246870	+	Silent	SNP	A	A	G			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	6	97246870	97246870	A	G	SNP	GPR63	ENST00000229955	human	ensembl	74_37	-1	known	silent	c.738	p.I246	0.971	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR63	HGNC	ENSG00000112218				49	0	0	56	4	6.66667
AGFG2	0	genome.wustl.edu	37	7	100159886	100159886	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	100159886	100159886	C	A	SNP	AGFG2	ENST00000300176	human	ensembl	74_37	+1	known	missense	c.882	p.S294R	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG2	HGNC	ENSG00000106351				58	0	0	46	12	20.6897
CBLL1	0	genome.wustl.edu	37	7	107399357	107399357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	107399357	107399357	C	T	SNP	CBLL1	ENST00000440859	human	ensembl	74_37	+1	known	missense	c.1210	p.P404S	1.000	NULL	pfscan_Znf_RING	-	no_errors	CBLL1	HGNC	ENSG00000105879				120	0	0	98	6	5.76923
LRRN3	0	genome.wustl.edu	37	7	110763825	110763825	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	110763825	110763825	C	A	SNP	LRRN3	ENST00000308478	human	ensembl	74_37	+1	known	missense	c.997	p.L333I	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRRN3	HGNC	ENSG00000173114				28	0	0	37	4	9.7561
PPP1R3A	0	genome.wustl.edu	37	7	113519400	113519400	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	113519400	113519400	G	A	SNP	PPP1R3A	ENST00000284601	human	ensembl	74_37	-1	known	missense	c.1747	p.H583Y	0.001	NULL	pfam_CBM_21,pfscan_CBM_21	-	no_errors	PPP1R3A	HGNC	ENSG00000154415				40	0	0	43	6	12.2449
FOXP2	0	genome.wustl.edu	37	7	114299684	114299684	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	114299684	114299684	A	C	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.1678	p.T560P	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				46	0	0	36	3	7.69231
OR2A14	0	genome.wustl.edu	37	7	143826573	143826573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	143826573	143826573	C	T	SNP	OR2A14	ENST00000408899	human	ensembl	74_37	+1	known	missense	c.368	p.A123V	0.983	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A14	HGNC	ENSG00000221938				77	0	0	67	7	9.45946
OR2A1	0	genome.wustl.edu	37	7	144015510	144015510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	144015510	144015510	C	T	SNP	OR2A1	ENST00000408951	human	ensembl	74_37	+1	known	missense	c.293	p.T98M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A1	HGNC	ENSG00000221970				189	0	0	186	16	7.92079
INTS4L1	0	genome.wustl.edu	37	7	64639752	64639752	+	RNA	SNP	A	A	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	64639752	64639752	A	T	SNP	INTS4L1	ENST00000587624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	INTS4L1	HGNC	ENSG00000164669				15	0	0	9	4	30.7692
INTS4L1	0	genome.wustl.edu	37	7	64661070	64661070	+	RNA	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	64661070	64661070	G	A	SNP	INTS4L1	ENST00000587624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	INTS4L1	HGNC	ENSG00000164669				8	0	0	12	4	25
GNG11	0	genome.wustl.edu	37	7	93555472	93555472	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	93555472	93555472	G	T	SNP	GNG11	ENST00000248564	human	ensembl	74_37	+1	known	nonsense	c.166	p.G56*	1.000	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG11	HGNC	ENSG00000127920				43	0	0	26	12	31.5789
FAM135B	0	genome.wustl.edu	37	8	139164616	139164616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	8	139164616	139164616	C	T	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.2102	p.R701Q	0.863	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				30	0	0	30	5	14.2857
TSNARE1	0	genome.wustl.edu	37	8	143425589	143425589	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	8	143425589	143425589	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	silent	c.483	p.Y161	0.176	NULL	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045				50	0	0	38	5	11.6279
BRINP1	0	genome.wustl.edu	37	9	122011382	122011382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	9	122011382	122011382	C	T	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.265	p.D89N	1.000	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				29	0	0	24	3	11.1111
SMARCA2	0	genome.wustl.edu	37	9	2039788	2039788	+	Silent	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	9	2039788	2039788	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.678	p.Q226	0.993	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				9	0	0	10	4	28.5714
H2BFWT	0	genome.wustl.edu	37	X	103267818	103267818	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	103267818	103267818	G	A	SNP	H2BFWT	ENST00000217926	human	ensembl	74_37	-1	known	missense	c.415	p.R139W	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	H2BFWT	HGNC	ENSG00000123569				21	0	0	12	7	36.8421
IL1RAPL2	0	genome.wustl.edu	37	X	105011214	105011214	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	105011214	105011214	A	T	SNP	IL1RAPL2	ENST00000344799	human	ensembl	74_37	+1	known	missense	c.1621	p.S541C	1.000	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,superfamily_TIR_dom,smart_Ig_sub,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ	-	no_errors	IL1RAPL2	HGNC	ENSG00000189108				37	0	0	33	17	34
COL4A5	0	genome.wustl.edu	37	X	107829938	107829938	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	107829938	107829938	C	A	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.1126	p.P376T	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				19	0	0	26	6	18.75
DCAF12L2	0	genome.wustl.edu	37	X	125298874	125298874	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	125298874	125298874	C	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	missense	c.1034	p.C345F	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				33	0	0	37	6	13.9535
MAGEC3	0	genome.wustl.edu	37	X	140984423	140984423	+	RNA	SNP	C	C	T			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	140984423	140984423	C	T	SNP	MAGEC3	ENST00000483584	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAGEC3	HGNC	ENSG00000165509				46	0	0	31	9	22.5
MAGEA12	0	genome.wustl.edu	37	X	151900231	151900231	+	Silent	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	151900231	151900231	C	A	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.570	p.L190	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				63	0	0	43	9	17.3077
FIGF	0	genome.wustl.edu	37	X	15381403	15381403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	X	15381403	15381403	C	A	SNP	FIGF	ENST00000297904	human	ensembl	74_37	-1	known	missense	c.129	p.Q43H	1.000	NULL	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	FIGF	HGNC	ENSG00000165197				24	0	0	27	3	10
SRRM1	0	genome.wustl.edu	37	1	24981344	24981346	+	Splice_Site	DEL	AGA	AGA	-			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	24981344	24981346	AGA	-	DEL	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	splice_site_del	c.1041-2_1041-1	e9-1	1.000:1.000:1.000	-	-	-	no_errors	SRRM1	HGNC	ENSG00000133226				63	0	0	59	10	14.4928
ARID1A	0	genome.wustl.edu	37	1	27089494	27089494	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	1	27089494	27089494	C	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.2450	p.L818fs	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				49	0	0	17	7	29.1667
C2orf48	0	genome.wustl.edu	37	2	10350536	10350537	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	2	10350536	10350537	AG	-	DEL	C2orf48	ENST00000381786	human	ensembl	74_37	+1	known	frame_shift_del	c.293_294	p.P100fs	0.001:0.001	NULL	NULL	-	no_errors	C2orf48	HGNC	ENSG00000163009				33	0	0	32	3	8.57143
AMPH	0	genome.wustl.edu	37	7	38433753	38433754	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	7	38433753	38433754	-	C	INS	AMPH	ENST00000356264	human	ensembl	74_37	-1	known	frame_shift_ins	c.1460_1459	p.A487fs	0.002:0.000	NULL	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053				98	0	0	64	5	7.24638
CPQ	0	genome.wustl.edu	37	8	97797118	97797118	+	RNA	DEL	A	A	-			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	8	97797118	97797118	A	-	DEL	CPQ	ENST00000525310	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CPQ	HGNC	ENSG00000104324				28	0	0	27	3	10
POLE3	0	genome.wustl.edu	37	9	116172488	116172489	+	RNA	INS	-	-	C			TCGA-BR-8686-01A-11D-2394-08	TCGA-BR-8686-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9e2f3833-01ad-4c0e-bbbd-4453b29317dc	14ec5473-f321-4a3a-a230-0293047438b0	9	116172488	116172489	-	C	INS	POLE3	ENST00000475080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996:0.127	-	-	-	no_errors	POLE3	HGNC	ENSG00000148229				12	0	0	15	2	11.7647
