Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TRIM33	0	genome.wustl.edu	37	1	114968300	114968300	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	114968300	114968300	T	A	SNP	TRIM33	ENST00000358465	human	ensembl	74_37	-1	known	missense	c.1466	p.N489I	1.000	NULL	pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	TRIM33	HGNC	ENSG00000197323				131	1	0.757576	79	63	44.3662
NBPF10	0	genome.wustl.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	145367767	145367767	G	A	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	missense	c.10363	p.E3455K	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				55	0	0	42	4	8.69565
GABPB2	0	genome.wustl.edu	37	1	151090703	151090703	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	151090703	151090703	A	G	SNP	GABPB2	ENST00000368918	human	ensembl	74_37	+1	known	missense	c.1318	p.R440G	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	GABPB2	HGNC	ENSG00000143458				94	0	0	71	16	18.3908
FLG	0	genome.wustl.edu	37	1	152282658	152282658	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	152282658	152282658	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.4704	p.A1568	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				415	1	0.240385	332	147	30.6889
CHRNB2	0	genome.wustl.edu	37	1	154544415	154544415	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	154544415	154544415	C	T	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	silent	c.1116	p.G372	0.005	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				14	0	0	5	8	61.5385
FCRL1	0	genome.wustl.edu	37	1	157771760	157771760	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	157771760	157771760	C	T	SNP	FCRL1	ENST00000368176	human	ensembl	74_37	-1	known	silent	c.831	p.E277	0.745	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL1	HGNC	ENSG00000163534				129	0	0	95	29	23.3871
CD5L	0	genome.wustl.edu	37	1	157804383	157804383	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	157804383	157804383	G	A	SNP	CD5L	ENST00000368174	human	ensembl	74_37	-1	known	nonsense	c.532	p.Q178*	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD5L	HGNC	ENSG00000073754				162	0	0	115	34	22.8188
KIAA1614	0	genome.wustl.edu	37	1	180905367	180905367	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	180905367	180905367	A	T	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	missense	c.2322	p.E774D	0.002	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				138	0	0	122	15	10.9489
ZNF648	0	genome.wustl.edu	37	1	182026306	182026306	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	182026306	182026306	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	74_37	-1	novel	silent	c.840	p.A280	0.023	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930				29	0	0	12	11	47.8261
KCNT2	0	genome.wustl.edu	37	1	196205114	196205114	+	Splice_Site	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	196205114	196205114	A	G	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	splice_site	c.3296+2	e27+2	1.000	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687				140	0	0	123	15	10.8696
PPP2R5A	0	genome.wustl.edu	37	1	212534003	212534003	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	212534003	212534003	G	A	SNP	PPP2R5A	ENST00000261461	human	ensembl	74_37	+1	known	missense	c.1352	p.R451H	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5A	HGNC	ENSG00000066027				43	0	0	53	6	10.1695
FAM71A	0	genome.wustl.edu	37	1	212798999	212798999	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	212798999	212798999	C	T	SNP	FAM71A	ENST00000294829	human	ensembl	74_37	+1	known	silent	c.780	p.P260	0.000	NULL	pfam_DUF3699	-	no_errors	FAM71A	HGNC	ENSG00000162771				159	0	0	144	24	14.2857
ACTN2	0	genome.wustl.edu	37	1	236917358	236917358	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	236917358	236917358	C	G	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1951	p.P651A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				119	0	0	78	32	29.0909
TXLNA	0	genome.wustl.edu	37	1	32658837	32658837	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	32658837	32658837	A	T	SNP	TXLNA	ENST00000373609	human	ensembl	74_37	+1	known	missense	c.1187	p.E396V	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNA	HGNC	ENSG00000084652				76	0	0	80	8	9.09091
JAK1	0	genome.wustl.edu	37	1	65304184	65304184	+	Silent	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	65304184	65304184	G	C	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	silent	c.2931	p.L977	0.991	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434				38	0	0	39	13	25
ELTD1	0	genome.wustl.edu	37	1	79387436	79387436	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	79387436	79387436	C	G	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.1119	p.W373C	1.000	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618				63	0	0	56	10	15.1515
CLSTN1	0	genome.wustl.edu	37	1	9791209	9791209	+	RNA	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	1	9791209	9791209	G	A	SNP	CLSTN1	ENST00000477264	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CLSTN1	HGNC	ENSG00000171603				106	0	0	48	26	35.1351
SH3PXD2A	0	genome.wustl.edu	37	10	105526894	105526894	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	105526894	105526894	C	A	SNP	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	missense	c.187	p.G63C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				38	0	0	35	4	10.2564
HSPA12A	0	genome.wustl.edu	37	10	118458177	118458177	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	118458177	118458177	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.515	p.A172V	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				131	0	0	133	7	5
ENKUR	0	genome.wustl.edu	37	10	25279504	25279504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	25279504	25279504	C	T	SNP	ENKUR	ENST00000331161	human	ensembl	74_37	-1	known	missense	c.482	p.R161Q	1.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023				37	0	0	27	7	20.5882
FRMPD2	0	genome.wustl.edu	37	10	49393656	49393656	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	49393656	49393656	C	A	SNP	FRMPD2	ENST00000374201	human	ensembl	74_37	-1	known	missense	c.2299	p.A767S	0.000	superfamily_PDZ	pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_PDZ,superfamily_FERM_central,superfamily_Kinase-like_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,pfscan_FERM_domain,pfscan_PDZ,prints_Band_41_fam	-	no_errors	FRMPD2	HGNC	ENSG00000170324				83	0	0	78	12	13.3333
CSTF2T	0	genome.wustl.edu	37	10	53458048	53458048	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	53458048	53458048	C	A	SNP	CSTF2T	ENST00000331173	human	ensembl	74_37	-1	known	missense	c.1262	p.R421L	0.854	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2T	HGNC	ENSG00000177613				148	0	0	169	27	13.7755
TET1	0	genome.wustl.edu	37	10	70446291	70446291	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	70446291	70446291	G	C	SNP	TET1	ENST00000373644	human	ensembl	74_37	+1	known	missense	c.5231	p.R1744T	0.997	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				138	0	0	113	32	22.069
CDH23	0	genome.wustl.edu	37	10	73538045	73538045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	73538045	73538045	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.5182	p.R1728C	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				76	0	0	48	11	18.6441
OIT3	0	genome.wustl.edu	37	10	74658610	74658610	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	74658610	74658610	G	A	SNP	OIT3	ENST00000334011	human	ensembl	74_37	+1	known	missense	c.250	p.A84T	1.000	NULL	pfam_ZP_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	OIT3	HGNC	ENSG00000138315				68	0	0	71	16	18.3908
PLCE1	0	genome.wustl.edu	37	10	95931103	95931103	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	10	95931103	95931103	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.1659	p.V553	0.392	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193				191	0	0	192	21	9.85915
MUC2	0	genome.wustl.edu	37	11	1087573	1087573	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	1087573	1087573	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.3324	p.C1108	0.963	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				41	0	0	28	3	9.67742
SERGEF	0	genome.wustl.edu	37	11	18010292	18010292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	18010292	18010292	C	A	SNP	SERGEF	ENST00000265965	human	ensembl	74_37	-1	known	missense	c.696	p.E232D	0.997	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,prints_Reg_chr_condens,pfscan_Reg_chr_condens	-	no_errors	SERGEF	HGNC	ENSG00000129158				45	0	0	44	7	13.7255
AMBRA1	0	genome.wustl.edu	37	11	46430169	46430169	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	46430169	46430169	C	T	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	silent	c.3297	p.V1099	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				72	0	0	69	14	16.8675
OR1S1	0	genome.wustl.edu	37	11	57982414	57982414	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	57982414	57982414	G	A	SNP	OR1S1	ENST00000309433	human	ensembl	74_37	+1	known	silent	c.198	p.T66	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S1	HGNC	ENSG00000172774				168	0	0	148	68	31.4815
CNTF	0	genome.wustl.edu	37	11	58391931	58391931	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	58391931	58391931	C	A	SNP	CNTF	ENST00000361987	human	ensembl	74_37	+1	known	missense	c.539	p.S180Y	0.575	pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	pfam_Ciliary_neurotrophic_fac_CNTF,superfamily_4_helix_cytokine-like_core	-	no_errors	CNTF	HGNC	ENSG00000242689				81	0	0	95	18	15.9292
MYO7A	0	genome.wustl.edu	37	11	76905526	76905526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	76905526	76905526	C	T	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.4280	p.T1427M	0.989	superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				23	0	0	21	3	12.5
GRM5	0	genome.wustl.edu	37	11	88300299	88300299	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	11	88300299	88300299	T	G	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.2552	p.K851T	1.000	prints_GPCR_3_mtglu_rcpt_5	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				102	0	0	95	14	12.844
OLR1	0	genome.wustl.edu	37	12	10312524	10312524	+	Silent	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	10312524	10312524	A	G	SNP	OLR1	ENST00000309539	human	ensembl	74_37	-1	known	silent	c.777	p.A259	0.637	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,prints_AntifreezeII,pfscan_C-type_lectin	-	no_errors	OLR1	HGNC	ENSG00000173391				111	0	0	91	35	27.7778
RPH3A	0	genome.wustl.edu	37	12	113316957	113316957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	113316957	113316957	A	G	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.1205	p.Y402C	0.880	superfamily_C2_dom	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				188	0	0	162	37	18.593
ABCC9	0	genome.wustl.edu	37	12	21997801	21997801	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	21997801	21997801	G	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.3145	p.L1049I	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				60	0	0	55	15	21.4286
ANO6	0	genome.wustl.edu	37	12	45797015	45797015	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	45797015	45797015	A	C	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.1773	p.R591S	0.997	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119				62	0	0	49	8	14.0351
BIN2	0	genome.wustl.edu	37	12	51717838	51717838	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	51717838	51717838	C	T	SNP	BIN2	ENST00000267012	human	ensembl	74_37	-1	known	missense	c.49	p.V17M	1.000	smart_BAR_dom	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom,prints_Amphiphysin	-	no_errors	BIN2	HGNC	ENSG00000110934				87	0	0	72	5	6.49351
IKZF4	0	genome.wustl.edu	37	12	56420729	56420729	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	56420729	56420729	G	A	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.451	p.G151S	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				41	0	0	27	12	30.7692
B4GALNT3	0	genome.wustl.edu	37	12	666773	666773	+	Splice_Site	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	666773	666773	G	C	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	splice_site	c.2381-1	e16-1	1.000	-	-	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				65	0	0	50	24	32.4324
SLC2A3	0	genome.wustl.edu	37	12	8074062	8074062	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	12	8074062	8074062	C	T	SNP	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	missense	c.1438	p.V480I	0.000	NULL	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				466	0	0	498	51	9.28962
COL4A1	0	genome.wustl.edu	37	13	110831620	110831620	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	13	110831620	110831620	C	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2342	p.R781I	0.989	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				116	0	0	139	21	13.125
TPTE2	0	genome.wustl.edu	37	13	20041401	20041401	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	13	20041401	20041401	A	C	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	missense	c.476	p.I159S	0.000	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				40	0	0	42	5	10.6383
SLITRK6	0	genome.wustl.edu	37	13	86369127	86369127	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	13	86369127	86369127	A	C	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.1517	p.L506R	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				74	0	0	81	32	28.3186
DYNC1H1	0	genome.wustl.edu	37	14	102478443	102478443	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	14	102478443	102478443	C	A	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.6850	p.L2284M	1.000	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				124	0	0	89	6	6.31579
RNF31	0	genome.wustl.edu	37	14	24624667	24624667	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	14	24624667	24624667	G	C	SNP	RNF31	ENST00000324103	human	ensembl	74_37	+1	known	missense	c.2349	p.K783N	1.000	smart_Znf_C6HC	pfam_PUB_domain,pfam_Znf_C6HC,superfamily_UBA-like,superfamily_DEATH-like_dom,superfamily_Znf_FYVE_PHD,smart_Znf_RanBP2,smart_Znf_C6HC,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_RanBP2	-	no_errors	RNF31	HGNC	ENSG00000092098				125	0	0	70	14	16.6667
DACT1	0	genome.wustl.edu	37	14	59112668	59112668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	14	59112668	59112668	G	A	SNP	DACT1	ENST00000335867	human	ensembl	74_37	+1	known	missense	c.1327	p.A443T	0.000	NULL	NULL	-	no_errors	DACT1	HGNC	ENSG00000165617				131	0	0	94	12	11.3208
FNTB	0	genome.wustl.edu	37	14	65507581	65507581	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	14	65507581	65507581	C	T	SNP	FNTB	ENST00000447296	human	ensembl	74_37	+1	known	silent	c.868	p.L290	1.000	pfam_Prenyltrans,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Prenyltrans,pfam_Transcrpt_activator_Churchill,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	FNTB	HGNC	ENSG00000257365				118	0	0	90	17	15.8879
TRPM1	0	genome.wustl.edu	37	15	31318418	31318418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	15	31318418	31318418	C	T	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.3604	p.V1202M	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				69	0	0	46	9	16.3636
MEIS2	0	genome.wustl.edu	37	15	37390190	37390190	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	15	37390190	37390190	G	A	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	missense	c.223	p.R75W	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS2	HGNC	ENSG00000134138				102	0	0	54	10	15.625
TTBK2	0	genome.wustl.edu	37	15	43038032	43038032	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	15	43038032	43038032	G	A	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	silent	c.3696	p.P1232	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTBK2	HGNC	ENSG00000128881				177	0	0	131	62	32.1244
FBN1	0	genome.wustl.edu	37	15	48712976	48712976	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	15	48712976	48712976	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.7727	p.R2576H	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				64	0	0	73	10	12.0482
ACAN	0	genome.wustl.edu	37	15	89384998	89384998	+	Silent	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	15	89384998	89384998	C	A	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	silent	c.657	p.G219	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766				109	0	0	86	17	16.5049
CIITA	0	genome.wustl.edu	37	16	11001447	11001447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	11001447	11001447	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.2098	p.R700W	0.000	pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				172	0	0	101	18	15.1261
TNP2	0	genome.wustl.edu	37	16	11362819	11362819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	11362819	11362819	G	A	SNP	TNP2	ENST00000312693	human	ensembl	74_37	-1	known	missense	c.301	p.R101C	0.025	pfam_TP2	pfam_TP2	-	no_errors	TNP2	HGNC	ENSG00000178279				91	0	0	91	14	13.3333
BAIAP3	0	genome.wustl.edu	37	16	1392041	1392041	+	Silent	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	1392041	1392041	C	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	silent	c.936	p.V312	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				78	0	0	52	5	8.77193
DNAH3	0	genome.wustl.edu	37	16	20976432	20976432	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	20976432	20976432	T	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8774	p.K2925I	1.000	superfamily_Prefoldin	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				287	0	0	184	79	30.038
DNAH3	0	genome.wustl.edu	37	16	20976433	20976433	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	20976433	20976433	T	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.8773	p.K2925Q	0.999	superfamily_Prefoldin	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				287	0	0	180	80	30.7692
PKD1	0	genome.wustl.edu	37	16	2161261	2161261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	2161261	2161261	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.3907	p.A1303T	0.191	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710				65	0	0	38	16	29.6296
ECI1	0	genome.wustl.edu	37	16	2296861	2296861	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	2296861	2296861	G	C	SNP	ECI1	ENST00000301729	human	ensembl	74_37	-1	known	missense	c.293	p.S98W	0.973	pfam_Crotonase_core_superfam	pfam_Crotonase_core_superfam	-	no_errors	ECI1	HGNC	ENSG00000167969				179	0	0	135	10	6.89655
KIF22	0	genome.wustl.edu	37	16	29809747	29809747	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	29809747	29809747	T	C	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.319	p.S107P	0.989	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				131	0	0	111	6	5.12821
DOC2A	0	genome.wustl.edu	37	16	30018255	30018255	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	30018255	30018255	C	A	SNP	DOC2A	ENST00000350119	human	ensembl	74_37	-1	known	missense	c.729	p.E243D	0.999	pirsf_Doc2	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Doc2,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927				58	0	0	24	9	27.2727
CREBBP	0	genome.wustl.edu	37	16	3786799	3786799	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	3786799	3786799	A	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4412	p.I1471N	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				140	0	0	122	28	18.6667
THAP11	0	genome.wustl.edu	37	16	67876787	67876787	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	67876787	67876787	G	A	SNP	THAP11	ENST00000303596	human	ensembl	74_37	+1	known	silent	c.330	p.Q110	0.954	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP11	HGNC	ENSG00000168286				115	0	0	60	18	23.0769
THAP11	0	genome.wustl.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	67876796	67876796	A	G	SNP	THAP11	ENST00000303596	human	ensembl	74_37	+1	known	silent	c.339	p.Q113	0.098	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP11	HGNC	ENSG00000168286				129	1	0.769231	75	15	16.6667
CRISPLD2	0	genome.wustl.edu	37	16	84940234	84940234	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	16	84940234	84940234	G	T	SNP	CRISPLD2	ENST00000262424	human	ensembl	74_37	+1	known	missense	c.1480	p.A494S	0.807	NULL	pfam_LCCL,pfam_CAP_domain,superfamily_CAP_domain,superfamily_LCCL,smart_Allrgn_V5/Tpx1,smart_LCCL,pfscan_LCCL,prints_Allrgn_V5/Tpx1	-	no_errors	CRISPLD2	HGNC	ENSG00000103196				127	0	0	109	33	23.2394
RAB11FIP4	0	genome.wustl.edu	37	17	29848243	29848243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	29848243	29848243	C	T	SNP	RAB11FIP4	ENST00000325874	human	ensembl	74_37	+1	known	missense	c.623	p.S208L	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfscan_EF_hand_dom	-	no_errors	RAB11FIP4	HGNC	ENSG00000131242				261	0	0	252	23	8.36364
KRT24	0	genome.wustl.edu	37	17	38854498	38854498	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	38854498	38854498	T	G	SNP	KRT24	ENST00000264651	human	ensembl	74_37	-1	known	missense	c.1569	p.K523N	0.070	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916				76	0	0	79	16	16.8421
ITGA3	0	genome.wustl.edu	37	17	48156529	48156529	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	48156529	48156529	G	A	SNP	ITGA3	ENST00000320031	human	ensembl	74_37	+1	known	silent	c.2490	p.L830	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA3	HGNC	ENSG00000005884				125	0	0	123	17	12.1429
TP53	0	genome.wustl.edu	37	17	7578500	7578500	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	7578500	7578500	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.430	p.Q144*	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				77	0	0	37	28	43.0769
TSPAN10	0	genome.wustl.edu	37	17	79612272	79612272	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	79612272	79612272	C	T	SNP	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	silent	c.291	p.I97	0.000	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				127	0	0	94	36	27.6923
TBCD	0	genome.wustl.edu	37	17	80726295	80726295	+	Splice_Site	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	80726295	80726295	G	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	splice_site	c.436-1	e5-1	1.000	-	-	-	no_errors	TBCD	HGNC	ENSG00000141556				301	0	0	268	41	13.2686
DSG3	0	genome.wustl.edu	37	18	29044178	29044178	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	18	29044178	29044178	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	silent	c.1104	p.T368	0.010	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				52	0	0	47	5	9.61538
PQLC1	0	genome.wustl.edu	37	18	77679319	77679319	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	18	77679319	77679319	C	A	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	missense	c.473	p.G158V	1.000	NULL	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				82	0	0	43	18	29.5082
KANK2	0	genome.wustl.edu	37	19	11289026	11289026	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	11289026	11289026	G	A	SNP	KANK2	ENST00000432929	human	ensembl	74_37	-1	known	silent	c.1539	p.N513	0.983	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK2	HGNC	ENSG00000197256				44	0	0	36	4	10
ZNF433	0	genome.wustl.edu	37	19	12128997	12128997	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	12128997	12128997	C	G	SNP	ZNF433	ENST00000344980	human	ensembl	74_37	-1	known	missense	c.123	p.R41S	0.046	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF433	HGNC	ENSG00000197647				92	0	0	61	4	6.15385
ACTN4	0	genome.wustl.edu	37	19	39218653	39218653	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	39218653	39218653	A	C	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.2405	p.E802A	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				41	0	0	28	4	12.5
SPIB	0	genome.wustl.edu	37	19	50926202	50926202	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	50926202	50926202	T	A	SNP	SPIB	ENST00000595883	human	ensembl	74_37	+1	known	missense	c.247	p.Y83N	0.998	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIB	HGNC	ENSG00000269404				200	1	0.497512	158	25	13.6612
MBOAT7	0	genome.wustl.edu	37	19	54678121	54678121	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	54678121	54678121	C	T	SNP	MBOAT7	ENST00000245615	human	ensembl	74_37	-1	known	missense	c.1036	p.A346T	1.000	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT7	HGNC	ENSG00000125505				64	0	0	56	14	20
NLRP11	0	genome.wustl.edu	37	19	56329269	56329269	+	Splice_Site	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	56329269	56329269	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	splice_site	c.271+1	e1+1	0.359	-	-	-	no_errors	NLRP11	HGNC	ENSG00000179873				91	0	0	135	16	10.596
ZNF835	0	genome.wustl.edu	37	19	57175530	57175530	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	19	57175530	57175530	A	G	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	missense	c.1037	p.V346A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903				49	0	0	29	15	34.0909
SPOPL	0	genome.wustl.edu	37	2	139326567	139326567	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	139326567	139326567	T	A	SNP	SPOPL	ENST00000280098	human	ensembl	74_37	+1	known	missense	c.1096	p.L366I	1.000	NULL	pfam_BTB_POZ,pfam_MATH,superfamily_TRAF-like,superfamily_BTB/POZ_fold,smart_MATH,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_MATH	-	no_errors	SPOPL	HGNC	ENSG00000144228				328	0	0	341	32	8.57909
SLC4A10	0	genome.wustl.edu	37	2	162821608	162821608	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	162821608	162821608	G	A	SNP	SLC4A10	ENST00000446997	human	ensembl	74_37	+1	known	silent	c.3084	p.T1028	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290				30	0	0	24	5	17.2414
TTN	0	genome.wustl.edu	37	2	179584365	179584365	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	179584365	179584365	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.20122	p.E6708K	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				149	0	0	126	15	10.6383
FSIP2	0	genome.wustl.edu	37	2	186678329	186678329	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	186678329	186678329	C	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.20152	p.L6718I	1.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				30	0	0	22	4	15.3846
HSPD1	0	genome.wustl.edu	37	2	198362005	198362005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	198362005	198362005	T	C	SNP	HSPD1	ENST00000345042	human	ensembl	74_37	-1	known	missense	c.286	p.K96E	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chaprnin_Cpn60	pfam_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,superfamily_Cpn60/TCP-1,prints_Chaprnin_Cpn60,prints_Chaperone_TCP-1,tigrfam_Chaprnin_Cpn60	-	no_errors	HSPD1	HGNC	ENSG00000144381				99	0	0	86	13	13.1313
ERBB4	0	genome.wustl.edu	37	2	212286786	212286786	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	212286786	212286786	C	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	silent	c.2910	p.L970	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				86	0	0	42	11	20.7547
SPEG	0	genome.wustl.edu	37	2	220355285	220355285	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	220355285	220355285	C	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	missense	c.9076	p.H3026N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				94	0	0	78	14	15.2174
HJURP	0	genome.wustl.edu	37	2	234749815	234749815	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	234749815	234749815	C	A	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	missense	c.1611	p.Q537H	0.000	NULL	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				122	0	0	120	15	11.1111
ACTG2	0	genome.wustl.edu	37	2	74129543	74129543	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	74129543	74129543	C	A	SNP	ACTG2	ENST00000345517	human	ensembl	74_37	+1	known	missense	c.183	p.S61R	1.000	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTG2	HGNC	ENSG00000163017				66	0	0	69	9	11.5385
CTNNA2	0	genome.wustl.edu	37	2	80808879	80808879	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	80808879	80808879	G	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.2044	p.D682Y	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				60	0	0	70	5	6.66667
ADAM17	0	genome.wustl.edu	37	2	9630307	9630307	+	Nonstop_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	9630307	9630307	T	A	SNP	ADAM17	ENST00000310823	human	ensembl	74_37	-1	known	nonstop	c.2474	p.*825L	0.844	NULL	pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B	-	no_errors	ADAM17	HGNC	ENSG00000151694				55	0	0	57	8	12.3077
ADAM33	0	genome.wustl.edu	37	20	3654882	3654882	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	3654882	3654882	A	G	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.650	p.V217A	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451				136	0	0	110	13	10.5691
RALGAPB	0	genome.wustl.edu	37	20	37137784	37137784	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	37137784	37137784	C	G	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.805	p.L269V	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				115	0	0	138	13	8.60927
PTPRT	0	genome.wustl.edu	37	20	40714431	40714431	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	40714431	40714431	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.3966	p.F1322	0.214	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				114	0	0	158	24	13.1868
SLC2A10	0	genome.wustl.edu	37	20	45354654	45354654	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	45354654	45354654	C	T	SNP	SLC2A10	ENST00000359271	human	ensembl	74_37	+1	known	missense	c.979	p.P327S	0.049	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496				120	0	0	140	12	7.89474
ZGPAT	0	genome.wustl.edu	37	20	62339972	62339972	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	62339972	62339972	C	G	SNP	ZGPAT	ENST00000328969	human	ensembl	74_37	+1	known	missense	c.40	p.R14G	0.055	NULL	pfam_G_patch_dom,smart_Znf_CCCH,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	ZGPAT	HGNC	ENSG00000197114				87	0	0	111	10	8.26446
UCKL1	0	genome.wustl.edu	37	20	62577873	62577873	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	20	62577873	62577873	G	C	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	missense	c.237	p.I79M	1.000	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				77	0	0	76	6	7.31707
DSCAM	0	genome.wustl.edu	37	21	41496224	41496224	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	21	41496224	41496224	C	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	silent	c.3594	p.A1198	0.215	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587				172	0	0	91	39	30
KRTAP10-5	0	genome.wustl.edu	37	21	46000423	46000423	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	21	46000423	46000423	G	A	SNP	KRTAP10-5	ENST00000400372	human	ensembl	74_37	-1	known	silent	c.33	p.S11	0.022	NULL	NULL	-	no_errors	KRTAP10-5	HGNC	ENSG00000241123				185	0	0	113	14	11.0236
PTTG1IP	0	genome.wustl.edu	37	21	46271452	46271452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	21	46271452	46271452	C	T	SNP	PTTG1IP	ENST00000445724	human	ensembl	74_37	-1	known	missense	c.259	p.A87T	0.000	NULL	NULL	-	no_errors	PTTG1IP	HGNC	ENSG00000183255				125	0	0	96	6	5.88235
DEPDC5	0	genome.wustl.edu	37	22	32275619	32275619	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	22	32275619	32275619	A	G	SNP	DEPDC5	ENST00000266091	human	ensembl	74_37	+1	known	missense	c.3848	p.H1283R	1.000	NULL	pfam_IML1,pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	-	no_errors	DEPDC5	HGNC	ENSG00000100150				133	0	0	89	28	23.9316
ARHGAP31	0	genome.wustl.edu	37	3	119133443	119133443	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	119133443	119133443	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.2667	p.D889	0.891	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				140	0	0	149	23	13.3721
ARHGAP31	0	genome.wustl.edu	37	3	119133998	119133998	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	119133998	119133998	C	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	silent	c.3222	p.S1074	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				290	0	0	210	65	23.6364
NEK11	0	genome.wustl.edu	37	3	130887684	130887684	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	130887684	130887684	A	G	SNP	NEK11	ENST00000383366	human	ensembl	74_37	+1	known	missense	c.1187	p.H396R	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK11	HGNC	ENSG00000114670				31	0	0	17	9	34.6154
XRN1	0	genome.wustl.edu	37	3	142048403	142048403	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	142048403	142048403	A	G	SNP	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	missense	c.4274	p.M1425T	0.967	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127				44	0	0	45	12	21.0526
HPS3	0	genome.wustl.edu	37	3	148881673	148881673	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	148881673	148881673	C	T	SNP	HPS3	ENST00000296051	human	ensembl	74_37	+1	known	silent	c.2526	p.H842	0.021	pirsf_HPS3	pirsf_HPS3	-	no_errors	HPS3	HGNC	ENSG00000163755				37	0	0	31	4	11.4286
SI	0	genome.wustl.edu	37	3	164712098	164712098	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	164712098	164712098	T	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.4788	p.Q1596H	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				43	0	0	47	5	9.61538
EPHA3	0	genome.wustl.edu	37	3	89456511	89456511	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	3	89456511	89456511	T	G	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.1687	p.L563V	0.988	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				38	0	0	45	4	8.16327
SLC9B1	0	genome.wustl.edu	37	4	103912856	103912856	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	103912856	103912856	C	A	SNP	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	nonsense	c.13	p.E5*	0.017	NULL	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				12	0	0	3	2	40
KIAA1109	0	genome.wustl.edu	37	4	123271022	123271022	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	123271022	123271022	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.13642	p.V4548F	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				133	1	0.746269	149	11	6.875
FAT4	0	genome.wustl.edu	37	4	126370306	126370306	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	126370306	126370306	T	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8135	p.M2712K	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				97	0	0	86	25	22.5225
TKTL2	0	genome.wustl.edu	37	4	164393459	164393459	+	Silent	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	164393459	164393459	G	T	SNP	TKTL2	ENST00000280605	human	ensembl	74_37	-1	known	silent	c.1428	p.T476	0.999	pfam_Transketolase-like_Pyr-bd,smart_Transketolase-like_Pyr-bd	pfam_Transketolase_N,pfam_Transketolase-like_Pyr-bd,pfam_Transketolase_C,pfam_DH_E1,superfamily_Transketo_C/Pyr-ferredox_oxred,smart_Transketolase-like_Pyr-bd	-	no_errors	TKTL2	HGNC	ENSG00000151005				137	0	0	116	36	23.6842
TLL1	0	genome.wustl.edu	37	4	166795130	166795130	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	166795130	166795130	T	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	missense	c.74	p.L25Q	0.124	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				259	0	0	283	37	11.5625
AADAT	0	genome.wustl.edu	37	4	170985953	170985953	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	170985953	170985953	C	G	SNP	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	missense	c.1063	p.A355P	0.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576				53	0	0	47	10	17.5439
SLIT2	0	genome.wustl.edu	37	4	20618788	20618788	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	20618788	20618788	A	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.4103	p.D1368V	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				87	0	0	92	11	10.6796
GABRG1	0	genome.wustl.edu	37	4	46067511	46067511	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	46067511	46067511	T	C	SNP	GABRG1	ENST00000295452	human	ensembl	74_37	-1	known	missense	c.412	p.N138D	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285				37	0	0	21	7	25
GABRB1	0	genome.wustl.edu	37	4	47033961	47033961	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	47033961	47033961	G	A	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	silent	c.111	p.V37	1.000	superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				208	0	0	147	46	23.8342
JAKMIP1	0	genome.wustl.edu	37	4	6107560	6107560	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	6107560	6107560	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	silent	c.264	p.R88	0.988	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				54	0	0	34	16	32
UGT2A2	0	genome.wustl.edu	37	4	70505297	70505297	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	70505297	70505297	A	T	SNP	UGT2A2	ENST00000457664	human	ensembl	74_37	-1	known	nonsense	c.62	p.L21*	0.389	NULL	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2A2	HGNC	ENSG00000271271				48	0	0	44	6	12
RUFY3	0	genome.wustl.edu	37	4	71654634	71654634	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	71654634	71654634	C	T	SNP	RUFY3	ENST00000417478	human	ensembl	74_37	+1	known	missense	c.1363	p.R455W	1.000	NULL	pfam_Run,superfamily_Prefoldin,smart_Run,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189				92	0	0	50	35	41.1765
PPEF2	0	genome.wustl.edu	37	4	76794425	76794425	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	76794425	76794425	C	A	SNP	PPEF2	ENST00000286719	human	ensembl	74_37	-1	known	missense	c.1361	p.G454V	1.000	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pirsf_Ser/Thr-Pase_EF-hand_contain,pfam_PEstase_dom,pfam_PPP_dom,smart_Ser/Thr-sp_prot-phosphatase,smart_EF_hand_dom,prints_Ser/Thr-sp_prot-phosphatase,pfscan_EF_hand_dom	-	no_errors	PPEF2	HGNC	ENSG00000156194				81	0	0	59	20	25.3165
ARHGAP24	0	genome.wustl.edu	37	4	86863309	86863309	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	86863309	86863309	A	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.482	p.D161V	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				56	0	0	46	11	19.2982
ARHGAP24	0	genome.wustl.edu	37	4	86863412	86863412	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	86863412	86863412	G	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.585	p.K195N	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				64	0	0	51	15	22.7273
ARHGAP24	0	genome.wustl.edu	37	4	86921732	86921732	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	86921732	86921732	C	T	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	nonsense	c.2104	p.R702*	1.000	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				51	0	0	44	12	21.4286
SLCO6A1	0	genome.wustl.edu	37	5	101709135	101709135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	5	101709135	101709135	C	T	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.2081	p.R694H	0.000	superfamily_MFS_dom_general_subst_transpt	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359				68	0	0	32	16	33.3333
SPARC	0	genome.wustl.edu	37	5	151051184	151051184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	5	151051184	151051184	C	T	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	missense	c.280	p.V94M	1.000	smart_Fol_N,smart_Kazal_dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				234	0	0	142	99	41.0788
DOCK2	0	genome.wustl.edu	37	5	169188588	169188588	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	5	169188588	169188588	C	A	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.2513	p.S838Y	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				157	0	0	144	27	15.7895
HTR1A	0	genome.wustl.edu	37	5	63256773	63256773	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	5	63256773	63256773	C	T	SNP	HTR1A	ENST00000323865	human	ensembl	74_37	-1	known	silent	c.774	p.S258	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt	-	no_errors	HTR1A	HGNC	ENSG00000178394				161	0	0	115	7	5.7377
CCNC	0	genome.wustl.edu	37	6	100009499	100009499	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	100009499	100009499	C	T	SNP	CCNC	ENST00000520429	human	ensembl	74_37	-1	known	silent	c.198	p.T66	0.973	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_CyclinC	-	no_errors	CCNC	HGNC	ENSG00000112237				60	0	0	48	7	12.7273
TPD52L1	0	genome.wustl.edu	37	6	125584070	125584070	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	125584070	125584070	G	C	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	missense	c.577	p.G193R	0.002	NULL	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907				48	0	0	40	16	28.5714
DHX16	0	genome.wustl.edu	37	6	30638885	30638885	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	30638885	30638885	C	T	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	missense	c.374	p.R125Q	1.000	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560				243	0	0	226	47	17.2161
COL11A2	0	genome.wustl.edu	37	6	33141499	33141499	+	Silent	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	33141499	33141499	G	T	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	silent	c.2607	p.P869	0.643	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248				48	0	0	41	9	18
CUTA	0	genome.wustl.edu	37	6	33385863	33385863	+	Splice_Site	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	33385863	33385863	C	G	SNP	CUTA	ENST00000374500	human	ensembl	74_37	-1	known	splice_site	c.99+1	e1+1	1.000	-	-	-	no_errors	CUTA	HGNC	ENSG00000112514				99	0	0	64	18	21.9512
FRS3	0	genome.wustl.edu	37	6	41738614	41738614	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	41738614	41738614	C	A	SNP	FRS3	ENST00000259748	human	ensembl	74_37	-1	known	missense	c.1222	p.G408W	0.998	NULL	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	FRS3	HGNC	ENSG00000137218				84	0	0	50	21	29.5775
AARS2	0	genome.wustl.edu	37	6	44270564	44270564	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	44270564	44270564	G	A	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	missense	c.2339	p.A780V	0.999	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				41	0	0	36	3	7.69231
SUPT3H	0	genome.wustl.edu	37	6	45332990	45332990	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	45332990	45332990	C	T	SNP	SUPT3H	ENST00000306867	human	ensembl	74_37	-1	known	missense	c.49	p.G17R	1.000	NULL	pfam_TFIID-18,superfamily_Histone-fold	-	no_errors	SUPT3H	HGNC	ENSG00000196284				71	0	0	44	7	13.7255
BMP5	0	genome.wustl.edu	37	6	55639028	55639028	+	Silent	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	55639028	55639028	G	A	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	silent	c.846	p.N282	0.988	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				92	0	0	106	17	13.8211
KCNQ5	0	genome.wustl.edu	37	6	73900347	73900347	+	Silent	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	73900347	73900347	A	T	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	silent	c.1659	p.P553	0.074	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				39	0	0	24	10	29.4118
CUX1	0	genome.wustl.edu	37	7	101821910	101821910	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	101821910	101821910	G	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	missense	c.1023	p.Q341H	1.000	superfamily_LemA-like_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				28	0	0	16	11	40.7407
AASS	0	genome.wustl.edu	37	7	121773576	121773576	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	121773576	121773576	C	G	SNP	AASS	ENST00000393376	human	ensembl	74_37	-1	known	missense	c.205	p.D69H	1.000	pfam_AlaDH/PNT_N	pfam_Saccharopine_DH/HSpermid_syn,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N	-	no_errors	AASS	HGNC	ENSG00000008311				49	0	0	65	4	5.7971
ABCB8	0	genome.wustl.edu	37	7	150733041	150733041	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	150733041	150733041	C	T	SNP	ABCB8	ENST00000297504	human	ensembl	74_37	+1	known	nonsense	c.1051	p.Q351*	0.878	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB8	HGNC	ENSG00000197150				63	0	0	47	9	16.0714
ABCA13	0	genome.wustl.edu	37	7	48450173	48450173	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	48450173	48450173	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.12127	p.R4043C	0.788	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				178	0	0	164	55	25.1142
PCLO	0	genome.wustl.edu	37	7	82579130	82579130	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	82579130	82579130	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.10774	p.R3592C	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				60	0	0	80	27	25.2336
ABCB1	0	genome.wustl.edu	37	7	87179782	87179782	+	Splice_Site	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	87179782	87179782	A	G	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	splice_site	c.1224+2	e10+2	1.000	-	-	-	no_errors	ABCB1	HGNC	ENSG00000085563				48	0	0	40	8	16.6667
CCDC132	0	genome.wustl.edu	37	7	92887535	92887535	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	92887535	92887535	A	G	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.487	p.K163E	1.000	pfam_Vacuolar_sorting-assoc_54	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766				43	0	0	26	9	25.7143
OR2AE1	0	genome.wustl.edu	37	7	99473925	99473925	+	Silent	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	7	99473925	99473925	G	T	SNP	OR2AE1	ENST00000316368	human	ensembl	74_37	-1	known	silent	c.732	p.L244	0.596	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AE1	HGNC	ENSG00000244623				92	0	0	93	41	30.597
UBR5	0	genome.wustl.edu	37	8	103297970	103297970	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	103297970	103297970	A	C	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	nonsense	c.5255	p.L1752*	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				70	0	0	85	54	38.8489
CSMD3	0	genome.wustl.edu	37	8	113933973	113933973	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	113933973	113933973	A	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1516	p.S506A	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				53	0	0	99	12	10.8108
TRPS1	0	genome.wustl.edu	37	8	116427158	116427158	+	Nonsense_Mutation	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	116427158	116427158	A	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	nonsense	c.2978	p.L993*	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				155	0	0	316	29	8.4058
HAS2	0	genome.wustl.edu	37	8	122626532	122626532	+	Silent	SNP	C	C	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	122626532	122626532	C	G	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	silent	c.1476	p.V492	0.995	NULL	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				131	0	0	190	26	12.037
FAM86B2	0	genome.wustl.edu	37	8	12286292	12286292	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	12286292	12286292	G	A	SNP	FAM86B2	ENST00000262365	human	ensembl	74_37	-1	known	nonsense	c.592	p.R198*	0.898	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B2	HGNC	ENSG00000145002				69	0	0	39	7	15.2174
LRRC6	0	genome.wustl.edu	37	8	133584696	133584696	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	133584696	133584696	G	T	SNP	LRRC6	ENST00000250173	human	ensembl	74_37	-1	known	missense	c.1259	p.P420H	0.961	NULL	superfamily_HSP20-like_chaperone,smart_U2A'_phosphoprotein32A_C,pfscan_CS_dom	-	no_errors	LRRC6	HGNC	ENSG00000129295				111	0	0	199	13	6.13208
RNF122	0	genome.wustl.edu	37	8	33416224	33416224	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	33416224	33416224	G	A	SNP	RNF122	ENST00000256257	human	ensembl	74_37	-1	known	nonsense	c.91	p.Q31*	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF122	HGNC	ENSG00000133874				95	0	0	70	10	12.5
SOX17	0	genome.wustl.edu	37	8	55371955	55371955	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	55371955	55371955	C	T	SNP	SOX17	ENST00000297316	human	ensembl	74_37	+1	known	silent	c.645	p.D215	1.000	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX17	HGNC	ENSG00000164736				17	0	0	17	5	22.7273
TRPA1	0	genome.wustl.edu	37	8	72951146	72951146	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	8	72951146	72951146	C	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.2249	p.G750V	0.995	NULL	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				57	0	0	57	7	10.9375
TDRD7	0	genome.wustl.edu	37	9	100257957	100257957	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	100257957	100257957	A	G	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.3089	p.N1030S	0.001	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116				161	0	0	138	15	9.80392
SVEP1	0	genome.wustl.edu	37	9	113265372	113265372	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	113265372	113265372	T	C	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.1429	p.K477E	0.971	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				78	0	0	73	25	25.5102
TLR4	0	genome.wustl.edu	37	9	120475724	120475724	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	120475724	120475724	T	G	SNP	TLR4	ENST00000355622	human	ensembl	74_37	+1	known	missense	c.1318	p.F440V	0.392	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR4	HGNC	ENSG00000136869				96	0	0	78	15	16.129
C5	0	genome.wustl.edu	37	9	123785724	123785724	+	Silent	SNP	A	A	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	123785724	123785724	A	C	SNP	C5	ENST00000223642	human	ensembl	74_37	-1	known	silent	c.1074	p.A358	0.996	NULL	pfam_A2M_comp,pfam_Macroglobln_a2,pfam_A2M_N_2,pfam_A-macroglobulin_rcpt-bd,pfam_Netrin_module_non-TIMP,pfam_A2M_N,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn_comp_syst_dom	-	no_errors	C5	HGNC	ENSG00000106804				147	0	0	120	35	22.5806
CA9	0	genome.wustl.edu	37	9	35680798	35680798	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	35680798	35680798	T	C	SNP	CA9	ENST00000378357	human	ensembl	74_37	+1	known	missense	c.1286	p.V429A	0.014	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA9	HGNC	ENSG00000107159				92	0	0	89	5	5.31915
ZNF484	0	genome.wustl.edu	37	9	95609461	95609461	+	Silent	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	95609461	95609461	C	T	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	silent	c.1614	p.K538	0.009	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				165	0	0	160	19	10.6145
PTCH1	0	genome.wustl.edu	37	9	98240429	98240429	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	9	98240429	98240429	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.1255	p.V419M	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				84	0	0	90	16	15.0943
GUCY2F	0	genome.wustl.edu	37	X	108635293	108635293	+	Silent	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	108635293	108635293	T	C	SNP	GUCY2F	ENST00000218006	human	ensembl	74_37	-1	known	silent	c.2628	p.E876	0.997	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase	-	no_errors	GUCY2F	HGNC	ENSG00000101890				92	0	0	79	17	17.7083
UTP14A	0	genome.wustl.edu	37	X	129060230	129060230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	129060230	129060230	C	T	SNP	UTP14A	ENST00000394422	human	ensembl	74_37	+1	known	missense	c.1958	p.A653V	1.000	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697				91	0	0	75	7	8.53659
MAGEC3	0	genome.wustl.edu	37	X	140953351	140953351	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	140953351	140953351	A	T	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	missense	c.218	p.Q73L	0.001	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509				132	0	0	95	41	30.1471
MIR506	0	genome.wustl.edu	37	X	146312299	146312299	+	RNA	SNP	T	T	C			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	146312299	146312299	T	C	SNP	MIR506	ENST00000384998	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR506	HGNC	ENSG00000207731				103	0	0	112	13	10.4
GABRA3	0	genome.wustl.edu	37	X	151358276	151358276	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	151358276	151358276	C	A	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.1069	p.A357S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				104	0	0	77	36	31.8584
F8	0	genome.wustl.edu	37	X	154225313	154225313	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	154225313	154225313	T	G	SNP	F8	ENST00000360256	human	ensembl	74_37	-1	known	missense	c.323	p.K108T	1.000	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010				203	0	0	165	23	12.234
ASMTL	0	genome.wustl.edu	37	X	1557992	1557992	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	1557992	1557992	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	74_37	-1	known	missense	c.271	p.V91M	1.000	pfam_Maf,tigrfam_Maf	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093				151	0	0	94	14	12.963
DMD	0	genome.wustl.edu	37	X	32366552	32366552	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	32366552	32366552	G	T	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.5419	p.L1807M	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				43	0	0	34	5	12.8205
DMD	0	genome.wustl.edu	37	X	32583888	32583888	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	32583888	32583888	T	G	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.1923	p.E641D	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				120	0	0	85	31	26.7241
DGKK	0	genome.wustl.edu	37	X	50111946	50111946	+	RNA	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	50111946	50111946	T	G	SNP	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				41	0	0	25	5	16.6667
MTMR8	0	genome.wustl.edu	37	X	63444310	63444310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	63444310	63444310	C	T	SNP	MTMR8	ENST00000453546	human	ensembl	74_37	-1	known	missense	c.1987	p.V663I	0.946	pfam_SOCS_C,smart_SOCS_C	pfam_Myotubularin-like_Pase_dom,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043				51	0	0	50	16	24.2424
AR	0	genome.wustl.edu	37	X	66765645	66765645	+	Silent	SNP	T	T	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	66765645	66765645	T	G	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.657	p.T219	0.095	pfam_Andrgn_rcpt,prints_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				66	0	0	53	11	17.1875
AR	0	genome.wustl.edu	37	X	66766242	66766242	+	Silent	SNP	T	T	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	66766242	66766242	T	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	silent	c.1254	p.G418	0.100	pfam_Andrgn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				14	0	0	14	4	22.2222
MED12	0	genome.wustl.edu	37	X	70361778	70361778	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	70361778	70361778	G	A	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.6463	p.A2155T	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634				61	0	0	40	8	16.6667
LPAR4	0	genome.wustl.edu	37	X	78011061	78011061	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	78011061	78011061	G	A	SNP	LPAR4	ENST00000435339	human	ensembl	74_37	+1	known	missense	c.695	p.R232H	0.994	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR4	HGNC	ENSG00000147145				50	0	0	55	7	11.2903
PCDH11X	0	genome.wustl.edu	37	X	91133203	91133203	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	X	91133203	91133203	C	T	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.1964	p.S655L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				72	0	0	90	19	17.4312
NEK8	0	genome.wustl.edu	37	17	27068495	27068496	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	17	27068495	27068496	-	G	INS	NEK8	ENST00000268766	human	ensembl	74_37	+1	known	frame_shift_ins	c.1956_1957	p.L653fs	0.041:0.996	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Prot_kinase_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_RCC1/BLIP-II,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602				108	0	0	68	19	21.8391
PARD3B	0	genome.wustl.edu	37	2	206165333	206165334	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	2	206165333	206165334	-	GA	INS	PARD3B	ENST00000406610	human	ensembl	74_37	+1	known	frame_shift_ins	c.2265_2266	p.V756fs	0.001:1.000	NULL	pfam_DUF3534,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PARD3B	HGNC	ENSG00000116117				169	0	0	153	32	17.2973
UGT2B28	0	genome.wustl.edu	37	4	70146541	70146542	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	4	70146541	70146542	-	G	INS	UGT2B28	ENST00000335568	human	ensembl	74_37	+1	known	frame_shift_ins	c.323_324	p.Y108fs	0.000:0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B28	HGNC	ENSG00000135226				58	0	0	54	16	22.8571
FILIP1	0	genome.wustl.edu	37	6	76022220	76022222	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-8690-01A-11D-2394-08	TCGA-BR-8690-10A-01D-2394-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	edc8839f-fa6b-41e0-ad49-f688073730bd	3e7926eb-67ff-43c6-a3be-7a3cc78d03c2	6	76022220	76022222	GAA	-	DEL	FILIP1	ENST00000237172	human	ensembl	74_37	-1	known	in_frame_del	c.3328_3326	p.L1109in_frame_del	1.000:0.993:1.000	NULL	pfam_Cortactin-binding_p2_N,prints_Tropomyosin	-	no_errors	FILIP1	HGNC	ENSG00000118407				181	0	0	145	25	14.7059
