Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADCY10	0	genome.wustl.edu	37	1	167839531	167839531	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	1	167839531	167839531	A	G	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	missense	c.1580	p.M527T	0.003	superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				28	0	0	50	5	9.09091
AGO1	0	genome.wustl.edu	37	1	36359356	36359356	+	Silent	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	1	36359356	36359356	C	T	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	silent	c.594	p.F198	1.000	pfam_DUF1785,superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				55	0	0	79	5	5.95238
DNMBP	0	genome.wustl.edu	37	10	101716054	101716054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	10	101716054	101716054	C	T	SNP	DNMBP	ENST00000342239	human	ensembl	74_37	-1	known	missense	c.1177	p.E393K	0.003	NULL	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_BAR_dom,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	DNMBP	HGNC	ENSG00000107554				67	0	0	125	10	7.40741
CCDC3	0	genome.wustl.edu	37	10	12940586	12940586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	10	12940586	12940586	G	A	SNP	CCDC3	ENST00000378825	human	ensembl	74_37	-1	known	missense	c.643	p.R215W	0.856	NULL	NULL	-	no_errors	CCDC3	HGNC	ENSG00000151468				86	0	0	158	13	7.60234
LYZL1	0	genome.wustl.edu	37	10	29581519	29581519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	10	29581519	29581519	G	A	SNP	LYZL1	ENST00000375500	human	ensembl	74_37	+1	known	missense	c.349	p.D117N	0.938	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22	pfam_Glyco_hydro_22,superfamily_Lysozyme-like_dom,smart_Glyco_hydro_22,prints_Glyco_hydro_22,prints_Glyco_hydro_22_lys	-	no_errors	LYZL1	HGNC	ENSG00000120563				48	0	0	82	7	7.86517
TPTE2P6	0	genome.wustl.edu	37	13	25161397	25161397	+	RNA	SNP	C	C	G			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	13	25161397	25161397	C	G	SNP	TPTE2P6	ENST00000440905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	TPTE2P6	HGNC	ENSG00000205822				19	0	0	50	3	5.66038
ZFYVE26	0	genome.wustl.edu	37	14	68222803	68222803	+	Silent	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	14	68222803	68222803	C	T	SNP	ZFYVE26	ENST00000347230	human	ensembl	74_37	-1	known	silent	c.6648	p.K2216	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE26	HGNC	ENSG00000072121				225	0	0	502	28	5.28302
UNC79	0	genome.wustl.edu	37	14	94008977	94008977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	14	94008977	94008977	G	A	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.1690	p.V564I	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				90	0	0	150	12	7.40741
HERC2P4	0	genome.wustl.edu	37	16	32190787	32190787	+	RNA	SNP	T	T	C			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	16	32190787	32190787	T	C	SNP	HERC2P4	ENST00000566591	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.879	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267				11	0	0	21	7	25
CDH1	0	genome.wustl.edu	37	16	68844154	68844154	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	16	68844154	68844154	A	T	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.742	p.I248F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				77	0	0	175	13	6.91489
KRTAP4-11	0	genome.wustl.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	17	39274087	39274087	G	C	SNP	KRTAP4-11	ENST00000391413	human	ensembl	74_37	-1	known	missense	c.481	p.L161V	0.005	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-11	HGNC	ENSG00000212721				16	0	0	24	3	11.1111
DGKE	0	genome.wustl.edu	37	17	54933909	54933909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	17	54933909	54933909	G	A	SNP	DGKE	ENST00000284061	human	ensembl	74_37	+1	known	missense	c.1135	p.D379N	1.000	pfam_Diacylglycerol_kin_accessory,smart_Diacylglycerol_kin_accessory	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKE	HGNC	ENSG00000153933				15	0	0	29	2	6.45161
ICAM5	0	genome.wustl.edu	37	19	10403881	10403881	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	19	10403881	10403881	A	T	SNP	ICAM5	ENST00000221980	human	ensembl	74_37	+1	known	missense	c.1424	p.D475V	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376				82	0	0	109	7	6.03448
ZNF536	0	genome.wustl.edu	37	19	31039733	31039733	+	Silent	SNP	C	C	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	19	31039733	31039733	C	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.3207	p.I1069	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				65	0	0	84	6	6.66667
FCGBP	0	genome.wustl.edu	37	19	40370213	40370213	+	Silent	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	19	40370213	40370213	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.12453	p.D4151	0.059	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				19	0	0	26	18	40.9091
LRRC8E	0	genome.wustl.edu	37	19	7965138	7965138	+	Silent	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	19	7965138	7965138	C	T	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	silent	c.1731	p.S577	1.000	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				48	0	0	81	5	5.81395
SCN7A	0	genome.wustl.edu	37	2	167330357	167330357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	2	167330357	167330357	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	missense	c.395	p.C132Y	0.074	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				19	0	0	24	2	7.69231
DYSF	0	genome.wustl.edu	37	2	71797446	71797446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	2	71797446	71797446	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3106	p.R1036W	0.997	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				41	0	0	65	6	8.4507
RMND5A	0	genome.wustl.edu	37	2	86998770	86998770	+	Silent	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	2	86998770	86998770	C	T	SNP	RMND5A	ENST00000283632	human	ensembl	74_37	+1	known	silent	c.1047	p.P349	1.000	NULL	smart_LisH_dimerisation,smart_CTLH_C,smart_CRA_dom,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RMND5A	HGNC	ENSG00000153561				52	0	0	74	7	8.64198
FRG1	0	genome.wustl.edu	37	4	190874255	190874255	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	4	190874255	190874255	A	T	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.292	p.T98S	1.000	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				13	0	0	21	6	22.2222
GABRB1	0	genome.wustl.edu	37	4	47427792	47427792	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	4	47427792	47427792	G	A	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	missense	c.1182	p.M394I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288				78	0	0	131	7	5.07246
FAT2	0	genome.wustl.edu	37	5	150901071	150901071	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	5	150901071	150901071	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.11083	p.E3695K	0.026	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				46	0	0	86	9	9.47368
RFX6	0	genome.wustl.edu	37	6	117246619	117246619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	6	117246619	117246619	C	T	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.1682	p.A561V	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002				69	0	0	139	8	5.44218
TBP	0	genome.wustl.edu	37	6	170873698	170873698	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	6	170873698	170873698	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	missense	c.563	p.R188Q	1.000	pfam_TBP	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				31	0	0	46	4	8
IRF4	0	genome.wustl.edu	37	6	398916	398916	+	Silent	SNP	C	C	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	6	398916	398916	C	T	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	silent	c.726	p.A242	0.912	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				19	0	0	37	3	7.5
TMEM168	0	genome.wustl.edu	37	7	112424364	112424364	+	Silent	SNP	A	A	G			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	7	112424364	112424364	A	G	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	silent	c.517	p.L173	1.000	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				32	0	0	45	5	10
DEFB107A	0	genome.wustl.edu	37	8	7673126	7673126	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	8	7673126	7673126	C	A	SNP	DEFB107A	ENST00000335021	human	ensembl	74_37	-1	known	missense	c.25	p.V9F	0.013	NULL	NULL	-	no_errors	DEFB107A	HGNC	ENSG00000186572				8	0	0	7	5	41.6667
PIGR	0	genome.wustl.edu	37	1	207109129	207109130	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	1	207109129	207109130	-	T	INS	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	frame_shift_ins	c.1080_1079	p.V362fs	0.998:1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				23	0	0	74	9	10.8434
IRF9	0	genome.wustl.edu	37	14	24633132	24633134	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	14	24633132	24633134	AGC	-	DEL	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	in_frame_del	c.541_543	p.S184in_frame_del	0.064:0.076:0.081	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928				73	0	0	119	8	6.29921
PLG	0	genome.wustl.edu	37	6	161134305	161134306	+	RNA	INS	-	-	T			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	6	161134305	161134306	-	T	INS	PLG	ENST00000462918	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	PLG	HGNC	ENSG00000122194				8	0	0	7	4	36.3636
PRRC2A	0	genome.wustl.edu	37	6	31597456	31597457	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A44T-01A-32D-A24D-08	TCGA-BR-A44T-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	37ce42ea-840a-4163-b78f-c911a0d95839	e741ed6d-93bc-4a36-b2b4-6e9368ef4455	6	31597456	31597457	-	C	INS	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	frame_shift_ins	c.2088_2089	p.P698fs	0.011:0.420	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				30	0	0	83	8	8.79121
