Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CHIA	0	genome.wustl.edu	37	1	111862020	111862020	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	111862020	111862020	C	T	SNP	CHIA	ENST00000343320	human	ensembl	74_37	+1	known	silent	c.1107	p.G369	0.988	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro18cat,pfam_Chitin-bd_dom,superfamily_Glycoside_hydrolase_SF,superfamily_Chitin-bd_dom,smart_Chitinase_II,smart_Chitin-bd_dom,pfscan_Chitin-bd_dom	-	no_errors	CHIA	HGNC	ENSG00000134216				88	0	0	34	18	34.6154
NOTCH2	0	genome.wustl.edu	37	1	120548152	120548152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	120548152	120548152	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.215	p.R72H	0.000	pirsf_Notch,pfam_EG-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				84	0	0	37	26	41.2698
FLG2	0	genome.wustl.edu	37	1	152327441	152327441	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	152327441	152327441	T	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.2821	p.S941R	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				543	0	0	246	112	31.2849
INTS3	0	genome.wustl.edu	37	1	153723611	153723611	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	153723611	153723611	G	A	SNP	INTS3	ENST00000318967	human	ensembl	74_37	+1	known	missense	c.625	p.V209I	0.950	NULL	pfam_Int_cplx_su3	-	no_errors	INTS3	HGNC	ENSG00000143624				74	0	0	24	3	11.1111
PAPPA2	0	genome.wustl.edu	37	1	176563946	176563946	+	Silent	SNP	T	T	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	176563946	176563946	T	G	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	silent	c.1206	p.S402	0.000	superfamily_ConA-like_lec_gl_sf,smart_LamG-like	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				213	0	0	63	36	36.3636
KCNT2	0	genome.wustl.edu	37	1	196342281	196342281	+	Silent	SNP	G	G	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	196342281	196342281	G	T	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.1392	p.T464	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				70	0	0	22	11	33.3333
CFH	0	genome.wustl.edu	37	1	196695659	196695659	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	196695659	196695659	A	G	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.1933	p.T645A	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				61	0	0	34	9	20.9302
GPATCH2	0	genome.wustl.edu	37	1	217622646	217622646	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	217622646	217622646	C	T	SNP	GPATCH2	ENST00000366935	human	ensembl	74_37	-1	known	silent	c.1311	p.T437	0.864	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978				81	0	0	53	23	30.2632
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				308	1	0.323625	103	42	28.9655
OBSCN	0	genome.wustl.edu	37	1	228434298	228434298	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	228434298	228434298	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3827	p.A1276V	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				194	0	0	43	3	6.52174
CSMD2	0	genome.wustl.edu	37	1	34090854	34090854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	34090854	34090854	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.5297	p.A1766V	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				24	0	0	9	6	40
CAP1	0	genome.wustl.edu	37	1	40535490	40535490	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	40535490	40535490	C	G	SNP	CAP1	ENST00000372792	human	ensembl	74_37	+1	known	missense	c.937	p.R313G	0.996	NULL	pfam_Adenylate_cyclase-assoc_CAP_N,pfam_Adenylate_cyclase-assoc_CAP_C,superfamily_Adenylate_cyclase-assoc_CAP_N,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif	-	no_errors	CAP1	HGNC	ENSG00000131236				152	1	0.653595	50	28	35.8974
TACC2	0	genome.wustl.edu	37	10	123845412	123845412	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	123845412	123845412	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	missense	c.3397	p.G1133S	0.000	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				102	0	0	50	3	5.66038
GPR26	0	genome.wustl.edu	37	10	125426129	125426129	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	125426129	125426129	C	T	SNP	GPR26	ENST00000284674	human	ensembl	74_37	+1	known	missense	c.206	p.A69V	0.891	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478				23	0	0	4	3	42.8571
CPXM2	0	genome.wustl.edu	37	10	125557575	125557575	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	125557575	125557575	C	T	SNP	CPXM2	ENST00000241305	human	ensembl	74_37	-1	known	missense	c.806	p.R269H	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM2	HGNC	ENSG00000121898				94	0	0	31	17	35.4167
GPR123	0	genome.wustl.edu	37	10	134941940	134941940	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	134941940	134941940	G	A	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.2765	p.R922H	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				21	0	0	10	7	41.1765
DIP2C	0	genome.wustl.edu	37	10	486827	486827	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	486827	486827	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	silent	c.378	p.D126	0.962	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				103	0	0	22	19	46.3415
PCDH15	0	genome.wustl.edu	37	10	55698634	55698634	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	55698634	55698634	A	C	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.3314	p.L1105R	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				97	0	0	60	28	31.8182
CCAR1	0	genome.wustl.edu	37	10	70496773	70496773	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	70496773	70496773	C	A	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.214	p.Q72K	1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				68	0	0	40	17	29.8246
ITIH5	0	genome.wustl.edu	37	10	7621729	7621729	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	7621729	7621729	C	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	silent	c.1407	p.S469	0.000	smart_VWF_A,pfscan_VWF_A	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				201	0	0	62	13	17.3333
HELLS	0	genome.wustl.edu	37	10	96348000	96348000	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	10	96348000	96348000	C	T	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	silent	c.1479	p.F493	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				25	0	0	18	7	28
PCSK7	0	genome.wustl.edu	37	11	117100244	117100244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	11	117100244	117100244	G	A	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.317	p.P106L	0.000	superfamily_Prot_inh_propept	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				153	0	0	53	23	30.2632
PHLDB1	0	genome.wustl.edu	37	11	118502879	118502879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	11	118502879	118502879	G	A	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.2245	p.E749K	1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				121	1	0.819672	39	23	37.0968
VPS11	0	genome.wustl.edu	37	11	118938709	118938709	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	11	118938709	118938709	C	T	SNP	VPS11	ENST00000300793	human	ensembl	74_37	+1	known	silent	c.175	p.L59	0.993	pirsf_VPS11	pfam_VPS11_C,pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_RING,pirsf_VPS11,pfscan_Znf_RING	-	no_errors	VPS11	HGNC	ENSG00000160695				26	0	0	14	8	36.3636
TMEM151A	0	genome.wustl.edu	37	11	66062277	66062277	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	11	66062277	66062277	G	A	SNP	TMEM151A	ENST00000327259	human	ensembl	74_37	+1	known	missense	c.560	p.R187H	1.000	NULL	NULL	-	no_errors	TMEM151A	HGNC	ENSG00000179292				8	0	0	1	3	75
ARAP1	0	genome.wustl.edu	37	11	72421453	72421453	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	11	72421453	72421453	C	G	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	missense	c.1393	p.V465L	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				239	0	0	142	8	5.33333
CLEC1A	0	genome.wustl.edu	37	12	10233947	10233947	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	10233947	10233947	C	G	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	missense	c.280	p.G94R	0.967	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048				89	0	0	54	16	22.8571
RPH3A	0	genome.wustl.edu	37	12	113328750	113328750	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	113328750	113328750	C	T	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.1717	p.R573C	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				57	0	0	12	4	25
KRT75	0	genome.wustl.edu	37	12	52822136	52822136	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	52822136	52822136	C	G	SNP	KRT75	ENST00000252245	human	ensembl	74_37	-1	known	missense	c.1286	p.R429P	0.997	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT75	HGNC	ENSG00000170454				136	1	0.729927	30	22	42.3077
NEUROD4	0	genome.wustl.edu	37	12	55420636	55420636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	55420636	55420636	C	T	SNP	NEUROD4	ENST00000242994	human	ensembl	74_37	+1	known	missense	c.413	p.A138V	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD4	HGNC	ENSG00000123307				121	0	0	54	21	28
KCNC2	0	genome.wustl.edu	37	12	75444552	75444552	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	75444552	75444552	G	A	SNP	KCNC2	ENST00000549446	human	ensembl	74_37	-1	known	silent	c.1233	p.N411	0.996	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC2	HGNC	ENSG00000166006				98	0	0	37	20	35.0877
LIN7A	0	genome.wustl.edu	37	12	81205323	81205323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	12	81205323	81205323	C	T	SNP	LIN7A	ENST00000552864	human	ensembl	74_37	-1	known	missense	c.623	p.R208H	1.000	pirsf_Lin-7_homologue	pfam_PDZ,pfam_L27_C,superfamily_PDZ,smart_L27,smart_PDZ,pirsf_Lin-7_homologue,pfscan_L27,pfscan_PDZ	-	no_errors	LIN7A	HGNC	ENSG00000111052				47	0	0	14	9	39.1304
ARHGEF7	0	genome.wustl.edu	37	13	111767941	111767941	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	13	111767941	111767941	C	A	SNP	ARHGEF7	ENST00000375741	human	ensembl	74_37	+1	known	missense	c.68	p.T23N	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,pfam_CH-domain,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain	-	no_errors	ARHGEF7	HGNC	ENSG00000102606				55	0	0	15	14	48.2759
TUBA3C	0	genome.wustl.edu	37	13	19752452	19752452	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	13	19752452	19752452	G	A	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	silent	c.309	p.Y103	0.999	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				195	0	0	100	32	24.2424
N4BP2L2	0	genome.wustl.edu	37	13	33016958	33016958	+	Silent	SNP	T	T	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	13	33016958	33016958	T	G	SNP	N4BP2L2	ENST00000399396	human	ensembl	74_37	-1	known	silent	c.1716	p.G572	0.000	NULL	superfamily_P-loop_NTPase	-	no_errors	N4BP2L2	HGNC	ENSG00000244754				30	0	0	35	17	32.6923
RPL10L	0	genome.wustl.edu	37	14	47120473	47120473	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	14	47120473	47120473	T	C	SNP	RPL10L	ENST00000298283	human	ensembl	74_37	-1	known	missense	c.467	p.K156R	1.000	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	pfam_Ribosomal_L10e/L16,superfamily_Ribosomal_L10e/L16,pirsf_Ribosomal_L10e,tigrfam_Ribosomal_L10e	-	no_errors	RPL10L	HGNC	ENSG00000165496				150	0	0	64	29	31.1828
NGB	0	genome.wustl.edu	37	14	77732917	77732917	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	14	77732917	77732917	C	T	SNP	NGB	ENST00000298352	human	ensembl	74_37	-1	known	missense	c.418	p.V140I	0.995	superfamily_Globin-like,pfscan_Globin	pfam_Globin,superfamily_Globin-like,pfscan_Globin	-	no_errors	NGB	HGNC	ENSG00000165553				113	0	0	34	20	37.037
UNC45A	0	genome.wustl.edu	37	15	91488262	91488262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	15	91488262	91488262	A	G	SNP	UNC45A	ENST00000418476	human	ensembl	74_37	+1	known	missense	c.1168	p.N390D	1.000	pfam_UNC-45/Ring3	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45A	HGNC	ENSG00000140553				97	0	0	45	21	31.8182
CACNA1H	0	genome.wustl.edu	37	16	1248716	1248716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	1248716	1248716	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.745	p.V249I	0.996	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				76	0	0	34	16	32
GP2	0	genome.wustl.edu	37	16	20335362	20335362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	20335362	20335362	G	A	SNP	GP2	ENST00000381362	human	ensembl	74_37	-1	known	missense	c.311	p.S104L	0.971	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	GP2	HGNC	ENSG00000169347				145	1	0.684932	47	30	38.961
CCDC64B	0	genome.wustl.edu	37	16	3079379	3079379	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	3079379	3079379	G	T	SNP	CCDC64B	ENST00000389347	human	ensembl	74_37	-1	known	missense	c.1009	p.P337T	0.109	NULL	superfamily_Sig_transdc_His_kinase_dimeric	-	no_errors	CCDC64B	HGNC	ENSG00000162069				50	0	0	12	4	25
CCDC64B	0	genome.wustl.edu	37	16	3080765	3080765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	3080765	3080765	C	T	SNP	CCDC64B	ENST00000389347	human	ensembl	74_37	-1	known	missense	c.547	p.G183R	0.647	superfamily_Sig_transdc_His_kinase_dimeric	superfamily_Sig_transdc_His_kinase_dimeric	-	no_errors	CCDC64B	HGNC	ENSG00000162069				44	0	0	7	5	41.6667
SLC12A3	0	genome.wustl.edu	37	16	56904589	56904589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	56904589	56904589	G	A	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	missense	c.793	p.V265M	0.980	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915				89	0	0	29	13	30.9524
SF3B3	0	genome.wustl.edu	37	16	70563087	70563087	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	70563087	70563087	C	G	SNP	SF3B3	ENST00000302516	human	ensembl	74_37	+1	known	missense	c.382	p.R128G	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C,superfamily_WD40_repeat_dom	-	no_errors	SF3B3	HGNC	ENSG00000189091				119	1	0.833333	43	19	30.6452
TCF25	0	genome.wustl.edu	37	16	89977665	89977665	+	RNA	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	16	89977665	89977665	G	A	SNP	TCF25	ENST00000564957	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TCF25	HGNC	ENSG00000141002				87	0	0	31	10	24.3902
CORO6	0	genome.wustl.edu	37	17	27949748	27949748	+	RNA	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	27949748	27949748	C	T	SNP	CORO6	ENST00000577909	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.963	-	-	-	no_errors	CORO6	HGNC	ENSG00000167549				10	0	0	4	7	63.6364
CASC3	0	genome.wustl.edu	37	17	38318075	38318075	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	38318075	38318075	G	C	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.367	p.V123L	1.000	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				101	0	0	153	25	14.0449
SPPL2C	0	genome.wustl.edu	37	17	43924090	43924090	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	43924090	43924090	C	T	SNP	SPPL2C	ENST00000329196	human	ensembl	74_37	+1	known	silent	c.1818	p.D606	0.367	NULL	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Preselin/SPP	-	no_errors	SPPL2C	HGNC	ENSG00000185294				196	0	0	33	22	40
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				55	0	0	19	19	50
CTDNEP1	0	genome.wustl.edu	37	17	7147528	7147528	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	7147528	7147528	G	C	SNP	CTDNEP1	ENST00000318988	human	ensembl	74_37	-1	known	missense	c.711	p.N237K	1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDNEP1	HGNC	ENSG00000175826				63	0	0	12	13	52
TP53	0	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	7577082	7577082	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.856	p.E286K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				84	0	0	22	21	48.8372
ENSG00000214999	0	genome.wustl.edu	37	17	7983799	7983799	+	Silent	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	7983799	7983799	A	G	SNP	ENSG00000214999	ENST00000399413	human	ensembl	74_37	+1	putative	silent	c.480	p.R160	0.000	NULL	NULL	-	no_errors	AC129492.6	Clone_based_vega_gene	ENSG00000214999				20	0	0	5	2	28.5714
NOTUM	0	genome.wustl.edu	37	17	79910990	79910990	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	79910990	79910990	G	A	SNP	NOTUM	ENST00000409678	human	ensembl	74_37	-1	known	silent	c.1338	p.N446	1.000	NULL	pfam_NOTUM	-	no_errors	NOTUM	HGNC	ENSG00000185269				61	0	0	86	9	9.47368
SLC16A3	0	genome.wustl.edu	37	17	80195301	80195301	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	80195301	80195301	G	A	SNP	SLC16A3	ENST00000392339	human	ensembl	74_37	+1	known	missense	c.655	p.D219N	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Monocarb_transpt	-	no_errors	SLC16A3	HGNC	ENSG00000141526				18	0	0	23	3	11.5385
CTAGE1	0	genome.wustl.edu	37	18	19995683	19995683	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	19995683	19995683	C	A	SNP	CTAGE1	ENST00000391403	human	ensembl	74_37	-1	known	nonsense	c.2092	p.G698*	0.383	NULL	NULL	-	no_errors	CTAGE1	HGNC	ENSG00000212710				173	1	0.574713	64	63	49.6063
RIOK3	0	genome.wustl.edu	37	18	21053570	21053570	+	Silent	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	21053570	21053570	A	G	SNP	RIOK3	ENST00000339486	human	ensembl	74_37	+1	known	silent	c.993	p.K331	1.000	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	-	no_errors	RIOK3	HGNC	ENSG00000101782				40	0	0	25	12	32.4324
ZNF521	0	genome.wustl.edu	37	18	22804824	22804824	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	22804824	22804824	A	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.3058	p.F1020V	0.998	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				94	0	0	41	31	43.0556
DSC2	0	genome.wustl.edu	37	18	28649082	28649082	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	28649082	28649082	G	A	SNP	DSC2	ENST00000280904	human	ensembl	74_37	-1	known	silent	c.2286	p.G762	0.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC2	HGNC	ENSG00000134755				98	0	0	42	3	6.66667
EPB41L3	0	genome.wustl.edu	37	18	5397266	5397266	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	5397266	5397266	C	T	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	missense	c.2632	p.G878R	0.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				164	0	0	67	51	43.2203
ZNF516	0	genome.wustl.edu	37	18	74091693	74091693	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	18	74091693	74091693	G	C	SNP	ZNF516	ENST00000443185	human	ensembl	74_37	-1	known	missense	c.2377	p.P793A	0.009	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF516	HGNC	ENSG00000101493				76	0	0	13	12	48
C3P1	0	genome.wustl.edu	37	19	10160713	10160713	+	RNA	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	10160713	10160713	G	A	SNP	C3P1	ENST00000495140	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C3P1	HGNC	ENSG00000167798				164	0	0	57	14	19.7183
MAP1S	0	genome.wustl.edu	37	19	17836661	17836661	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	17836661	17836661	G	A	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	silent	c.468	p.T156	0.000	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479				145	0	0	49	16	24.6154
ISYNA1	0	genome.wustl.edu	37	19	18546941	18546941	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	18546941	18546941	C	T	SNP	ISYNA1	ENST00000338128	human	ensembl	74_37	-1	known	silent	c.876	p.A292	0.000	pfam_Myo-inos-1-P_Synthase,pirsf_Myo-inos-1-P_Synthase	pfam_Myo-inos-1-P_Synthase,pfam_Myo-inos-1-P_Synthase_GAPDH,pirsf_Myo-inos-1-P_Synthase	-	no_errors	ISYNA1	HGNC	ENSG00000105655				59	0	0	13	6	31.5789
ZNF729	0	genome.wustl.edu	37	19	22498532	22498532	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	22498532	22498532	A	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.2313	p.E771D	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				24	0	0	21	9	30
TMPRSS9	0	genome.wustl.edu	37	19	2422066	2422066	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	2422066	2422066	C	G	SNP	TMPRSS9	ENST00000332578	human	ensembl	74_37	+1	known	missense	c.2267	p.P756R	0.000	pirsf_Pept_S1A_polyserase-1	pirsf_Pept_S1A_polyserase-1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Trypsin-like_Pept_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS9	HGNC	ENSG00000178297				181	0	0	56	31	35.6322
GSK3A	0	genome.wustl.edu	37	19	42736836	42736836	+	Splice_Site	SNP	T	T	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	42736836	42736836	T	C	SNP	GSK3A	ENST00000222330	human	ensembl	74_37	-1	known	splice_site	c.1099-2	e9-2	0.999	-	-	-	no_errors	GSK3A	HGNC	ENSG00000105723				67	0	0	15	7	31.8182
CEACAM8	0	genome.wustl.edu	37	19	43098028	43098028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	43098028	43098028	G	A	SNP	CEACAM8	ENST00000244336	human	ensembl	74_37	-1	known	missense	c.89	p.P30L	0.034	NULL	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM8	HGNC	ENSG00000124469				218	0	0	98	36	26.8657
KLK13	0	genome.wustl.edu	37	19	51559976	51559976	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	51559976	51559976	C	T	SNP	KLK13	ENST00000595793	human	ensembl	74_37	-1	known	nonsense	c.702	p.W234*	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK13	HGNC	ENSG00000167759				178	0	0	79	28	26.1682
MLLT1	0	genome.wustl.edu	37	19	6227101	6227101	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	6227101	6227101	G	A	SNP	MLLT1	ENST00000252674	human	ensembl	74_37	-1	known	missense	c.433	p.P145S	1.000	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT1	HGNC	ENSG00000130382				116	0	0	54	3	5.26316
GLI2	0	genome.wustl.edu	37	2	121747767	121747767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	121747767	121747767	C	T	SNP	GLI2	ENST00000361492	human	ensembl	74_37	+1	known	missense	c.4277	p.S1426L	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047				128	0	0	41	15	26.7857
LRP1B	0	genome.wustl.edu	37	2	141660732	141660732	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	141660732	141660732	C	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.3523	p.E1175Q	1.000	smart_LDrepeatLR_classA_rpt,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				38	0	0	40	14	25.9259
ARHGAP15	0	genome.wustl.edu	37	2	143974011	143974011	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	143974011	143974011	T	A	SNP	ARHGAP15	ENST00000295095	human	ensembl	74_37	+1	known	missense	c.293	p.L98Q	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884				53	0	0	38	11	22.449
KIF5C	0	genome.wustl.edu	37	2	149818628	149818628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	149818628	149818628	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	missense	c.1112	p.R371K	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				25	0	0	23	9	28.125
SCN7A	0	genome.wustl.edu	37	2	167284334	167284334	+	Silent	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	167284334	167284334	A	G	SNP	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	silent	c.2817	p.F939	0.999	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				41	0	0	14	4	22.2222
TTN	0	genome.wustl.edu	37	2	179604547	179604547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	179604547	179604547	C	T	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.12900	p.M4300I	0.002	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				210	0	0	136	57	29.5337
TTN	0	genome.wustl.edu	37	2	179634421	179634421	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	179634421	179634421	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.8887	p.T2963P	1.000	superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				124	1	0.8	75	32	29.9065
SPEG	0	genome.wustl.edu	37	2	220312960	220312960	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	220312960	220312960	G	A	SNP	SPEG	ENST00000312358	human	ensembl	74_37	+1	novel	silent	c.1080	p.S360	0.148	NULL	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195				86	0	0	18	9	33.3333
PSME4	0	genome.wustl.edu	37	2	54128631	54128631	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	2	54128631	54128631	G	T	SNP	PSME4	ENST00000404125	human	ensembl	74_37	-1	known	missense	c.3141	p.D1047E	1.000	superfamily_ARM-type_fold	pfam_DUF3437,superfamily_ARM-type_fold	-	no_errors	PSME4	HGNC	ENSG00000068878				183	0	0	128	47	26.8571
CST4	0	genome.wustl.edu	37	20	23669411	23669411	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	20	23669411	23669411	G	A	SNP	CST4	ENST00000217423	human	ensembl	74_37	-1	known	missense	c.196	p.R66C	0.002	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST4	HGNC	ENSG00000101441				137	0	0	73	18	19.7802
UBOX5	0	genome.wustl.edu	37	20	3102959	3102959	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	20	3102959	3102959	A	T	SNP	UBOX5	ENST00000217173	human	ensembl	74_37	-1	known	missense	c.326	p.V109D	0.001	NULL	pfam_Ubox_domain,smart_Ubox_domain,pfscan_Znf_RING	-	no_errors	UBOX5	HGNC	ENSG00000185019				113	0	0	64	13	16.8831
PXMP4	0	genome.wustl.edu	37	20	32298497	32298497	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	20	32298497	32298497	C	T	SNP	PXMP4	ENST00000409299	human	ensembl	74_37	-1	known	missense	c.239	p.R80Q	0.995	pirsf_Pmp4	pirsf_Pmp4	-	no_errors	PXMP4	HGNC	ENSG00000101417				69	0	0	37	7	15.9091
MYH7B	0	genome.wustl.edu	37	20	33588873	33588873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	20	33588873	33588873	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	74_37	+1	novel	missense	c.5513	p.T1838M	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814				109	0	0	56	13	18.8406
PTPRT	0	genome.wustl.edu	37	20	40744684	40744684	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	20	40744684	40744684	C	T	SNP	PTPRT	ENST00000373184	human	ensembl	74_37	-1	known	missense	c.3007	p.G1003R	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				9	0	0	2	2	50
APOBEC3H	0	genome.wustl.edu	37	22	39498015	39498015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	22	39498015	39498015	C	G	SNP	APOBEC3H	ENST00000442487	human	ensembl	74_37	+1	known	missense	c.511	p.R171G	0.000	pfam_APOBEC_C	pfam_APOBEC_N,pfam_APOBEC_C,pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3H	HGNC	ENSG00000100298				100	0	0	29	16	35.5556
IGSF11	0	genome.wustl.edu	37	3	118644976	118644976	+	Silent	SNP	G	G	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	118644976	118644976	G	T	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	silent	c.552	p.T184	0.998	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847				121	0	0	61	17	21.7949
ZXDC	0	genome.wustl.edu	37	3	126194460	126194460	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	126194460	126194460	G	C	SNP	ZXDC	ENST00000389709	human	ensembl	74_37	-1	known	missense	c.249	p.H83Q	0.064	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZXDC	HGNC	ENSG00000070476				43	0	0	9	5	35.7143
DGKG	0	genome.wustl.edu	37	3	185986618	185986618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	185986618	185986618	G	A	SNP	DGKG	ENST00000265022	human	ensembl	74_37	-1	known	missense	c.1088	p.A363V	1.000	smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKG	HGNC	ENSG00000058866				79	0	0	20	9	31.0345
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				168	1	0.591716	71	32	31.068
BSN	0	genome.wustl.edu	37	3	49698362	49698362	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	49698362	49698362	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.9084	p.P3028	0.001	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				119	0	0	35	10	22.2222
FAM212A	0	genome.wustl.edu	37	3	49842272	49842272	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	49842272	49842272	G	A	SNP	FAM212A	ENST00000333323	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	1.000	NULL	NULL	-	no_errors	FAM212A	HGNC	ENSG00000185614				262	0	0	71	33	31.7308
ST3GAL6	0	genome.wustl.edu	37	3	98512522	98512522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	3	98512522	98512522	G	A	SNP	ST3GAL6	ENST00000394162	human	ensembl	74_37	+1	known	missense	c.913	p.A305T	0.381	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL6	HGNC	ENSG00000064225				94	0	0	64	23	26.4368
UVSSA	0	genome.wustl.edu	37	4	1360175	1360175	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	4	1360175	1360175	A	C	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.1244	p.E415A	1.000	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				339	0	0	104	32	23.5294
TRIML1	0	genome.wustl.edu	37	4	189063413	189063413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	4	189063413	189063413	C	T	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	missense	c.512	p.T171I	0.991	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108				60	0	0	17	8	32
CHRNA9	0	genome.wustl.edu	37	4	40351080	40351080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	4	40351080	40351080	G	A	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.547	p.V183M	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343				221	0	0	109	53	32.716
PTPN13	0	genome.wustl.edu	37	4	87724881	87724881	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	4	87724881	87724881	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	silent	c.6540	p.N2180	0.001	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				105	0	0	83	29	25.8929
FAM13A	0	genome.wustl.edu	37	4	89702371	89702371	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	4	89702371	89702371	C	T	SNP	FAM13A	ENST00000264344	human	ensembl	74_37	-1	known	missense	c.1403	p.R468H	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	FAM13A	HGNC	ENSG00000138640				106	0	0	58	17	22.6667
BRD8	0	genome.wustl.edu	37	5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	137503737	137503737	C	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.673	p.G225C	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				234	0	0	64	28	30.4348
BRD8	0	genome.wustl.edu	37	5	137503739	137503739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	137503739	137503739	G	A	SNP	BRD8	ENST00000254900	human	ensembl	74_37	-1	known	missense	c.671	p.S224F	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,superfamily_Peptidase_M20_dimer,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD8	HGNC	ENSG00000112983				231	0	0	55	43	43.8776
DNAH5	0	genome.wustl.edu	37	5	13811889	13811889	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	13811889	13811889	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.7274	p.R2425H	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				81	0	0	35	15	30
COL23A1	0	genome.wustl.edu	37	5	177666176	177666176	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	177666176	177666176	G	A	SNP	COL23A1	ENST00000390654	human	ensembl	74_37	-1	known	missense	c.1586	p.P529L	0.818	NULL	pfam_Collagen	-	no_errors	COL23A1	HGNC	ENSG00000050767				129	0	0	43	18	29.5082
RAI14	0	genome.wustl.edu	37	5	34826448	34826448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	34826448	34826448	C	T	SNP	RAI14	ENST00000515799	human	ensembl	74_37	+1	known	missense	c.2672	p.S891L	0.999	superfamily_t-SNARE	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_t-SNARE,superfamily_UBA-like,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	RAI14	HGNC	ENSG00000039560				104	1	0.952381	43	16	27.1186
CMYA5	0	genome.wustl.edu	37	5	79026748	79026748	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	79026748	79026748	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	silent	c.2160	p.P720	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				92	0	0	44	10	18.5185
CFB	0	genome.wustl.edu	37	6	31915251	31915251	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	6	31915251	31915251	C	T	SNP	CFB	ENST00000556679	human	ensembl	74_37	+1	known	missense	c.2117	p.T706M	0.001	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649				195	0	0	63	19	23.1707
TNXB	0	genome.wustl.edu	37	6	32036449	32036449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	6	32036449	32036449	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.5938	p.A1980T	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				132	0	0	31	16	34.0426
BAI3	0	genome.wustl.edu	37	6	70065746	70065746	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	6	70065746	70065746	C	T	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	nonsense	c.3589	p.R1197*	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				97	0	0	53	26	32.9114
RIMS1	0	genome.wustl.edu	37	6	72889429	72889429	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	6	72889429	72889429	A	C	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.623	p.K208T	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				230	0	0	60	18	23.0769
HTR1B	0	genome.wustl.edu	37	6	78172243	78172243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	6	78172243	78172243	C	T	SNP	HTR1B	ENST00000369947	human	ensembl	74_37	-1	known	missense	c.878	p.R293Q	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT1B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_ADR_fam	-	no_errors	HTR1B	HGNC	ENSG00000135312				364	0	0	130	53	28.9617
GPER1	0	genome.wustl.edu	37	7	1131745	1131745	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	1131745	1131745	C	T	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	silent	c.381	p.A127	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850				186	0	0	76	43	36.1345
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				141	0	0	53	22	29.3333
DGKI	0	genome.wustl.edu	37	7	137531227	137531227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	137531227	137531227	G	A	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.382	p.R128W	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				84	0	0	18	5	21.7391
HIPK2	0	genome.wustl.edu	37	7	139416436	139416436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	139416436	139416436	C	T	SNP	HIPK2	ENST00000406875	human	ensembl	74_37	-1	known	missense	c.398	p.R133H	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393				74	0	0	23	22	48.8889
POM121	0	genome.wustl.edu	37	7	72412663	72412663	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	72412663	72412663	A	G	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	missense	c.2131	p.T711A	0.008	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313				130	0	0	51	29	36.25
RP1L1	0	genome.wustl.edu	37	8	10469501	10469501	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	10469501	10469501	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	nonsense	c.2107	p.R703*	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				125	0	0	17	20	54.0541
CSMD3	0	genome.wustl.edu	37	8	113694815	113694815	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	113694815	113694815	G	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.2533	p.R845W	0.939	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				107	0	0	248	37	12.9825
CSMD3	0	genome.wustl.edu	37	8	113702269	113702269	+	Silent	SNP	T	T	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	113702269	113702269	T	C	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.1983	p.K661	0.998	superfamily_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				145	0	0	336	44	11.5789
ADCY8	0	genome.wustl.edu	37	8	132051788	132051788	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	132051788	132051788	G	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	silent	c.792	p.Y264	0.980	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				74	0	0	86	7	7.52688
TUSC3	0	genome.wustl.edu	37	8	15517052	15517052	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	15517052	15517052	C	G	SNP	TUSC3	ENST00000503731	human	ensembl	74_37	+1	known	missense	c.463	p.P155A	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TUSC3	HGNC	ENSG00000104723				87	0	0	48	3	5.88235
SNTG1	0	genome.wustl.edu	37	8	51465632	51465632	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	51465632	51465632	G	T	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	missense	c.703	p.A235S	1.000	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				75	0	0	138	19	12.1019
DNAJC5B	0	genome.wustl.edu	37	8	66989069	66989069	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	66989069	66989069	C	T	SNP	DNAJC5B	ENST00000276570	human	ensembl	74_37	+1	known	silent	c.294	p.N98	0.998	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5B	HGNC	ENSG00000147570				195	0	0	212	39	15.5378
RALYL	0	genome.wustl.edu	37	8	85441713	85441713	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	8	85441713	85441713	G	A	SNP	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	missense	c.157	p.V53I	1.000	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672				52	0	0	97	13	11.8182
TMEM246	0	genome.wustl.edu	37	9	104238826	104238826	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	9	104238826	104238826	C	T	SNP	TMEM246	ENST00000374847	human	ensembl	74_37	-1	known	silent	c.549	p.S183	0.003	NULL	NULL	-	no_errors	TMEM246	HGNC	ENSG00000165152				93	0	0	45	14	23.7288
PAPPA	0	genome.wustl.edu	37	9	119033625	119033625	+	Silent	SNP	C	C	T			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	9	119033625	119033625	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	silent	c.2883	p.D961	1.000	tigrfam_Myxo_disulph_rpt	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752				220	0	0	88	104	54.1667
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				118	0	0	64	31	32.6316
FRMD3	0	genome.wustl.edu	37	9	86153105	86153105	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	9	86153105	86153105	G	A	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	silent	c.42	p.T14	0.979	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				21	0	0	9	10	52.6316
ZNF484	0	genome.wustl.edu	37	9	95609552	95609552	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	9	95609552	95609552	G	C	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	missense	c.1523	p.T508S	0.984	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				133	0	0	118	27	18.6207
LRCH2	0	genome.wustl.edu	37	X	114468294	114468294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	114468294	114468294	G	A	SNP	LRCH2	ENST00000317135	human	ensembl	74_37	-1	known	missense	c.311	p.P104L	1.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,superfamily_NA-bd_OB-fold,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH2	HGNC	ENSG00000130224				9	0	0	6	3	33.3333
TXLNG	0	genome.wustl.edu	37	X	16847765	16847765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	16847765	16847765	A	G	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	missense	c.736	p.I246V	0.982	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				80	0	0	26	3	10.3448
DMD	0	genome.wustl.edu	37	X	31191684	31191684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	31191684	31191684	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.10300	p.H3434Y	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				74	0	0	27	3	10
FAM47C	0	genome.wustl.edu	37	X	37028307	37028307	+	Silent	SNP	G	G	A			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	37028307	37028307	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.1824	p.P608	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				89	0	0	22	38	63.3333
SYN1	0	genome.wustl.edu	37	X	47435945	47435945	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	47435945	47435945	T	C	SNP	SYN1	ENST00000295987	human	ensembl	74_37	-1	known	missense	c.932	p.K311R	1.000	pfam_Synapsin_ATP-bd_dom,pfam_ATP-grasp_RimK-type	pfam_Synapsin_ATP-bd_dom,pfam_Synapsin_pre-ATP-grasp_dom,pfam_Synapsin_P_site,pfam_ATP-grasp_RimK-type,superfamily_PreATP-grasp_dom,prints_Synapsin	-	no_errors	SYN1	HGNC	ENSG00000008056				82	0	0	13	28	68.2927
RBMY2EP	0	genome.wustl.edu	37	Y	23562837	23562837	+	RNA	SNP	T	T	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	Y	23562837	23562837	T	G	SNP	RBMY2EP	ENST00000444169	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBMY2EP	HGNC	ENSG00000223637				48	0	0	13	17	56.6667
EXOC8	0	genome.wustl.edu	37	1	231472437	231472438	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	231472437	231472438	TC	-	DEL	EXOC8	ENST00000360394	human	ensembl	74_37	-1	known	frame_shift_del	c.1055_1054	p.D352fs	1.000:1.000	superfamily_Cullin_repeat-like_dom	superfamily_Cullin_repeat-like_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	EXOC8	HGNC	ENSG00000116903				128	0	0	78	28	26.4151
ALG6	0	genome.wustl.edu	37	1	63836751	63836751	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	1	63836751	63836751	A	-	DEL	ALG6	ENST00000487136	human	ensembl	74_37	+1	known	frame_shift_del	c.103	p.T38fs	0.000	NULL	NULL	-	no_errors	ALG6	HGNC	ENSG00000088035				49	0	0	35	18	33.9623
ENSG00000258428	0	genome.wustl.edu	37	14	57099977	57099977	+	RNA	DEL	T	T	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	14	57099977	57099977	T	-	DEL	ENSG00000258428	ENST00000553800	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-1085N6.2	Clone_based_vega_gene	ENSG00000258428				22	0	0	20	3	13.0435
NF1	0	genome.wustl.edu	37	17	29508492	29508493	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	29508492	29508493	AA	-	DEL	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_del	c.639_640	p.N214fs	1.000:1.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712				69	0	0	21	15	41.6667
RNF43	0	genome.wustl.edu	37	17	56448297	56448298	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	17	56448297	56448298	-	G	INS	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_ins	c.350_349	p.R117fs	1.000:1.000	superfamily_PAS	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				141	0	0	30	12	28.5714
LONP1	0	genome.wustl.edu	37	19	5692169	5692171	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	19	5692169	5692171	CTT	-	DEL	LONP1	ENST00000360614	human	ensembl	74_37	-1	known	in_frame_del	c.2754_2752	p.K918in_frame_del	1.000:1.000:1.000	pfam_Pept_S16_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_Lon_bac/euk-typ	pfam_Pept_S16_C,pfam_Pept_S16_N,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_Prk_AAA_dom,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_P-loop_NTPase,superfamily_PUA-like_domain,smart_Pept_S16_N,smart_AAA+_ATPase,tigrfam_Lon_bac/euk-typ	-	no_errors	LONP1	HGNC	ENSG00000196365				320	0	0	110	31	21.9858
PCDHA9	0	genome.wustl.edu	37	5	140230509	140230509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	5	140230509	140230509	T	-	DEL	PCDHA9	ENST00000378122	human	ensembl	74_37	+1	known	frame_shift_del	c.2429	p.L813fs	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				151	0	0	62	25	28.7356
ZNF733P	0	genome.wustl.edu	37	7	62752415	62752416	+	RNA	INS	-	-	C			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	7	62752415	62752416	-	C	INS	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				25	0	0	7	7	50
MAP7D3	0	genome.wustl.edu	37	X	135313186	135313186	+	RNA	DEL	T	T	-			TCGA-BR-A44U-01A-11D-A24D-08	TCGA-BR-A44U-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65ea2772-2b1c-4f32-9d08-de3133164565	bbdeaf3b-83c8-4f4e-a85e-d412a39556da	X	135313186	135313186	T	-	DEL	MAP7D3	ENST00000477124	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.018	-	-	-	no_errors	MAP7D3	HGNC	ENSG00000129680				16	0	0	36	5	12.1951
