Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ITGA10	0	genome.wustl.edu	37	1	145537786	145537786	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	145537786	145537786	G	A	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	missense	c.2624	p.R875Q	0.983	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127				110	0	0	42	22	34.375
LCE1A	0	genome.wustl.edu	37	1	152800031	152800031	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	152800031	152800031	A	C	SNP	LCE1A	ENST00000335123	human	ensembl	74_37	+1	known	missense	c.83	p.K28T	0.171	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844				113	0	0	104	31	22.963
UBE2Q1	0	genome.wustl.edu	37	1	154524996	154524996	+	RNA	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	154524996	154524996	C	G	SNP	UBE2Q1	ENST00000483639	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	UBE2Q1	HGNC	ENSG00000160714				34	0	0	39	10	20.4082
SPTA1	0	genome.wustl.edu	37	1	158654936	158654936	+	Silent	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	158654936	158654936	A	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	silent	c.226	p.L76	0.008	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				50	0	0	44	11	20
PAPPA2	0	genome.wustl.edu	37	1	176668606	176668606	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	176668606	176668606	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	silent	c.3117	p.Q1039	0.126	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				113	0	0	130	30	18.75
ASTN1	0	genome.wustl.edu	37	1	176992545	176992545	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	176992545	176992545	T	C	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.1433	p.E478G	1.000	smart_EG-like_dom	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				26	0	0	6	8	57.1429
KCNT2	0	genome.wustl.edu	37	1	196309524	196309524	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	196309524	196309524	G	A	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.1730	p.S577L	0.738	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				71	0	0	40	34	45.9459
MAPKAPK2	0	genome.wustl.edu	37	1	206905271	206905271	+	RNA	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	206905271	206905271	G	A	SNP	MAPKAPK2	ENST00000479009	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.751	-	-	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				125	0	0	123	27	18
OBSCN	0	genome.wustl.edu	37	1	228432100	228432100	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	228432100	228432100	G	A	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.3309	p.T1103	0.030	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				119	0	0	106	35	24.8227
CHML	0	genome.wustl.edu	37	1	241797705	241797705	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	241797705	241797705	G	C	SNP	CHML	ENST00000366553	human	ensembl	74_37	-1	known	missense	c.1364	p.S455C	0.997	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHML	HGNC	ENSG00000203668				99	0	0	90	22	19.6429
OR2T6	0	genome.wustl.edu	37	1	248551519	248551519	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	248551519	248551519	G	A	SNP	OR2T6	ENST00000355728	human	ensembl	74_37	+1	known	missense	c.610	p.V204I	0.000	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T6	HGNC	ENSG00000198104				56	0	0	31	31	50
RHCE	0	genome.wustl.edu	37	1	25712312	25712312	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	25712312	25712312	C	T	SNP	RHCE	ENST00000294413	human	ensembl	74_37	-1	known	silent	c.963	p.G321	0.000	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHCE	HGNC	ENSG00000188672				153	0	0	89	33	27.0492
LRRC7	0	genome.wustl.edu	37	1	70503883	70503883	+	Silent	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	70503883	70503883	T	C	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	silent	c.2262	p.R754	0.874	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				199	0	0	116	21	15.3285
SLC44A5	0	genome.wustl.edu	37	1	75680342	75680342	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	75680342	75680342	A	C	SNP	SLC44A5	ENST00000370855	human	ensembl	74_37	-1	known	missense	c.1750	p.F584V	1.000	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A5	HGNC	ENSG00000137968				34	0	0	16	5	23.8095
COL24A1	0	genome.wustl.edu	37	1	86241374	86241374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	86241374	86241374	C	T	SNP	COL24A1	ENST00000370571	human	ensembl	74_37	-1	known	missense	c.4357	p.G1453S	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL24A1	HGNC	ENSG00000171502				39	0	0	13	5	27.7778
PNLIPRP3	0	genome.wustl.edu	37	10	118236283	118236283	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	10	118236283	118236283	A	C	SNP	PNLIPRP3	ENST00000369230	human	ensembl	74_37	+1	known	missense	c.1292	p.K431T	0.620	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase,prints_Lipase_panc	-	no_errors	PNLIPRP3	HGNC	ENSG00000203837				44	0	0	39	16	29.0909
ZWINT	0	genome.wustl.edu	37	10	58120973	58120973	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	10	58120973	58120973	C	A	SNP	ZWINT	ENST00000373944	human	ensembl	74_37	-1	known	nonsense	c.25	p.E9*	0.003	NULL	NULL	-	no_errors	ZWINT	HGNC	ENSG00000122952				33	0	0	23	7	23.3333
NELL1	0	genome.wustl.edu	37	11	20907013	20907013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	20907013	20907013	C	T	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	missense	c.530	p.P177L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973				52	0	0	25	8	24.2424
BDNF	0	genome.wustl.edu	37	11	27680025	27680025	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	27680025	27680025	T	G	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	missense	c.333	p.Q111H	1.000	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				135	0	0	75	53	41.4062
ELP4	0	genome.wustl.edu	37	11	31625310	31625310	+	Splice_Site	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	31625310	31625310	A	G	SNP	ELP4	ENST00000379163	human	ensembl	74_37	+1	novel	splice_site	c.514-2	e5-2	0.008	-	-	-	no_errors	ELP4	HGNC	ENSG00000109911				48	0	0	48	11	18.6441
OR51A7	0	genome.wustl.edu	37	11	4928970	4928970	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	4928970	4928970	T	G	SNP	OR51A7	ENST00000359350	human	ensembl	74_37	+1	known	missense	c.371	p.L124R	0.990	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR51A7	HGNC	ENSG00000176895				76	0	0	43	19	30.6452
OR5M3	0	genome.wustl.edu	37	11	56237885	56237885	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	56237885	56237885	A	G	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	missense	c.89	p.L30P	0.858	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				83	0	0	59	26	30.5882
TNKS1BP1	0	genome.wustl.edu	37	11	57068505	57068505	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	57068505	57068505	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	missense	c.4982	p.R1661H	0.987	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				42	0	0	23	3	11.5385
OR52L1	0	genome.wustl.edu	37	11	6007679	6007679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	6007679	6007679	C	T	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	missense	c.482	p.C161Y	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313				81	0	0	41	19	31.6667
PELI3	0	genome.wustl.edu	37	11	66236332	66236332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	66236332	66236332	G	A	SNP	PELI3	ENST00000320740	human	ensembl	74_37	+1	known	missense	c.181	p.E61K	0.999	NULL	pfam_Pellino_fam	-	no_errors	PELI3	HGNC	ENSG00000174516				29	0	0	5	9	64.2857
ZNF214	0	genome.wustl.edu	37	11	7022511	7022511	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	7022511	7022511	T	G	SNP	ZNF214	ENST00000278314	human	ensembl	74_37	-1	known	missense	c.403	p.N135H	0.560	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF214	HGNC	ENSG00000149050				117	0	0	62	36	36.7347
ANAPC15	0	genome.wustl.edu	37	11	71820914	71820914	+	RNA	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	71820914	71820914	C	T	SNP	ANAPC15	ENST00000543015	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.021	-	-	-	no_errors	ANAPC15	HGNC	ENSG00000110200				54	0	0	40	7	14.8936
ANAPC15	0	genome.wustl.edu	37	11	71820961	71820961	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	71820961	71820961	C	T	SNP	ANAPC15	ENST00000227618	human	ensembl	74_37	-1	known	missense	c.332	p.G111D	1.000	NULL	NULL	-	no_errors	ANAPC15	HGNC	ENSG00000110200				53	0	0	45	7	13.4615
C2CD3	0	genome.wustl.edu	37	11	73829385	73829385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	73829385	73829385	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	missense	c.1408	p.D470N	0.938	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				85	0	0	51	7	12.069
TALDO1	0	genome.wustl.edu	37	11	764872	764872	+	RNA	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	764872	764872	C	G	SNP	TALDO1	ENST00000532202	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	TALDO1	HGNC	ENSG00000177156				98	0	0	122	17	12.2302
FAT3	0	genome.wustl.edu	37	11	92086977	92086977	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	11	92086977	92086977	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	nonsense	c.1699	p.R567*	0.109	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				54	0	0	38	16	29.6296
SBNO1	0	genome.wustl.edu	37	12	123810084	123810084	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	123810084	123810084	G	A	SNP	SBNO1	ENST00000420886	human	ensembl	74_37	-1	known	silent	c.1938	p.G646	0.153	NULL	pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Prismane-like	-	no_errors	SBNO1	HGNC	ENSG00000139697				159	0	0	58	95	62.0915
DHX37	0	genome.wustl.edu	37	12	125473527	125473527	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	125473527	125473527	C	G	SNP	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	missense	c.42	p.Q14H	0.999	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				27	0	0	10	14	58.3333
SLC2A13	0	genome.wustl.edu	37	12	40223997	40223997	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	40223997	40223997	G	A	SNP	SLC2A13	ENST00000280871	human	ensembl	74_37	-1	known	silent	c.1353	p.C451	0.723	superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229				38	0	0	30	11	26.8293
SCNN1A	0	genome.wustl.edu	37	12	6464509	6464509	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	6464509	6464509	C	A	SNP	SCNN1A	ENST00000358945	human	ensembl	74_37	-1	known	nonsense	c.1072	p.E358*	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1A	HGNC	ENSG00000111319				39	0	0	27	2	6.89655
GNB3	0	genome.wustl.edu	37	12	6953130	6953130	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	6953130	6953130	C	G	SNP	GNB3	ENST00000229264	human	ensembl	74_37	+1	known	missense	c.687	p.I229M	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664				66	0	0	57	13	18.5714
PZP	0	genome.wustl.edu	37	12	9315222	9315222	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	12	9315222	9315222	T	G	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.2759	p.K920T	0.010	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				62	0	0	33	11	25
ACIN1	0	genome.wustl.edu	37	14	23532171	23532171	+	Silent	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	14	23532171	23532171	G	T	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	silent	c.3024	p.G1008	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813				103	0	0	90	29	24.3697
MIA2	0	genome.wustl.edu	37	14	39716682	39716682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	14	39716682	39716682	C	T	SNP	MIA2	ENST00000556784	human	ensembl	74_37	+1	putative	missense	c.901	p.P301S	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA2	HGNC	ENSG00000150526				91	0	0	63	15	19.2308
DNM1P46	0	genome.wustl.edu	37	15	100340186	100340186	+	RNA	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	15	100340186	100340186	C	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397				29	0	0	32	4	11.1111
CASC5	0	genome.wustl.edu	37	15	40914809	40914809	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	15	40914809	40914809	G	C	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.2425	p.G809R	0.000	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812				55	0	0	31	4	11.4286
C15orf27	0	genome.wustl.edu	37	15	76467994	76467994	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	15	76467994	76467994	G	A	SNP	C15orf27	ENST00000388942	human	ensembl	74_37	+1	known	silent	c.747	p.T249	0.988	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758				55	0	0	35	11	23.913
WDR93	0	genome.wustl.edu	37	15	90258251	90258251	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	15	90258251	90258251	G	A	SNP	WDR93	ENST00000268130	human	ensembl	74_37	+1	known	silent	c.681	p.K227	1.000	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	WDR93	HGNC	ENSG00000140527				32	0	0	16	12	42.8571
LOC101930008	0	genome.wustl.edu	37	16	16415088	16415088	+	RNA	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	16415088	16415088	C	T	SNP	LOC101930008	ENST00000536260	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.357	-	-	-	no_errors	AC138969.4	Clone_based_vega_gene	ENSG00000183889				21	0	0	14	8	36.3636
LUC7L	0	genome.wustl.edu	37	16	239282	239282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	239282	239282	C	T	SNP	LUC7L	ENST00000293872	human	ensembl	74_37	-1	known	missense	c.1031	p.R344Q	0.901	NULL	pfam_Luc7-rel	-	no_errors	LUC7L	HGNC	ENSG00000007392				97	0	0	29	29	50
NPIPB11	0	genome.wustl.edu	37	16	29394364	29394364	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	29394364	29394364	C	T	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.1889	p.G630E	0.134	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206				80	0	0	98	12	10.9091
RNF40	0	genome.wustl.edu	37	16	30779227	30779227	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	30779227	30779227	G	A	SNP	RNF40	ENST00000324685	human	ensembl	74_37	+1	known	missense	c.1442	p.R481H	1.000	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF40	HGNC	ENSG00000103549				117	0	0	87	31	26.2712
GPR56	0	genome.wustl.edu	37	16	57685210	57685210	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	57685210	57685210	C	T	SNP	GPR56	ENST00000379696	human	ensembl	74_37	+1	known	missense	c.163	p.R55C	0.060	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,prints_GPCR_2_orphan_rcpt_GPR56,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR56	HGNC	ENSG00000205336				221	0	0	134	58	30.2083
CDRT15	0	genome.wustl.edu	37	17	14140016	14140016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	17	14140016	14140016	G	A	SNP	CDRT15	ENST00000431716	human	ensembl	74_37	-1	novel	missense	c.61	p.P21S	0.001	NULL	NULL	-	no_errors	CDRT15	HGNC	ENSG00000223510				26	0	0	25	4	13.7931
GAS2L2	0	genome.wustl.edu	37	17	34072128	34072128	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	17	34072128	34072128	G	A	SNP	GAS2L2	ENST00000254466	human	ensembl	74_37	-1	known	silent	c.2388	p.P796	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L2	HGNC	ENSG00000132139				181	0	0	125	8	6.01504
KRTAP9-8	0	genome.wustl.edu	37	17	39394378	39394378	+	Silent	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	17	39394378	39394378	C	G	SNP	KRTAP9-8	ENST00000254072	human	ensembl	74_37	+1	known	silent	c.75	p.T25	0.935	NULL	NULL	-	no_errors	KRTAP9-8	HGNC	ENSG00000187272				170	0	0	83	63	43.1507
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				73	0	0	29	35	54.6875
POTEC	0	genome.wustl.edu	37	18	14542958	14542958	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	18	14542958	14542958	T	A	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	missense	c.188	p.K63M	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206				425	0	0	306	63	17.0732
GTPBP3	0	genome.wustl.edu	37	19	17450362	17450362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	17450362	17450362	G	A	SNP	GTPBP3	ENST00000358792	human	ensembl	74_37	+1	known	missense	c.1024	p.G342S	0.896	pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	pfam_GTP-bd_TrmE_N,pfam_GTP_binding_domain,superfamily_P-loop_NTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	GTPBP3	HGNC	ENSG00000130299				61	0	0	35	11	23.913
ZNF429	0	genome.wustl.edu	37	19	21719186	21719186	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	21719186	21719186	T	G	SNP	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	missense	c.331	p.L111V	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				62	0	0	33	19	36.5385
ZNF429	0	genome.wustl.edu	37	19	21719297	21719297	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	21719297	21719297	G	T	SNP	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	missense	c.442	p.D148Y	0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				55	0	0	37	13	26
STAP2	0	genome.wustl.edu	37	19	4325405	4325405	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	4325405	4325405	C	A	SNP	STAP2	ENST00000600324	human	ensembl	74_37	-1	known	nonsense	c.967	p.E323*	0.029	NULL	pfscan_SH2	-	no_errors	STAP2	HGNC	ENSG00000178078				138	0	0	81	44	35.2
SYNGR4	0	genome.wustl.edu	37	19	48878949	48878949	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	48878949	48878949	C	T	SNP	SYNGR4	ENST00000344846	human	ensembl	74_37	+1	known	silent	c.411	p.L137	0.979	pfam_Marvel,pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467				128	0	0	80	24	23.0769
SYNGR4	0	genome.wustl.edu	37	19	48879318	48879318	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	48879318	48879318	C	T	SNP	SYNGR4	ENST00000601610	human	ensembl	74_37	+1	putative	missense	c.377	p.S126L	0.016	NULL	pfam_Marvel	-	no_errors	SYNGR4	HGNC	ENSG00000105467				60	0	0	44	6	12
SYNGR4	0	genome.wustl.edu	37	19	48879451	48879451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	48879451	48879451	C	T	SNP	SYNGR4	ENST00000344846	human	ensembl	74_37	+1	known	missense	c.581	p.S194F	0.011	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467				132	0	0	100	27	21.2598
UHRF1	0	genome.wustl.edu	37	19	4947120	4947120	+	RNA	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	4947120	4947120	C	G	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063				100	0	0	77	13	14.4444
ENSG00000269349	0	genome.wustl.edu	37	19	53015497	53015497	+	RNA	SNP	A	A	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	53015497	53015497	A	T	SNP	ENSG00000269349	ENST00000599143	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-3099C6.5	Clone_based_vega_gene	ENSG00000269349				58	0	0	43	16	27.1186
LOC100131691	0	genome.wustl.edu	37	19	59081920	59081920	+	RNA	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	59081920	59081920	A	C	SNP	LOC100131691	ENST00000593642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AC016629.8	Clone_based_vega_gene	ENSG00000267858				28	0	0	17	8	32
ZNF358	0	genome.wustl.edu	37	19	7585158	7585158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	7585158	7585158	G	A	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	missense	c.1030	p.E344K	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				157	0	0	120	56	31.8182
PXDN	0	genome.wustl.edu	37	2	1648500	1648500	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	1648500	1648500	G	A	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	silent	c.3633	p.I1211	0.926	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				37	0	0	14	10	41.6667
TTN	0	genome.wustl.edu	37	2	179449931	179449931	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	179449931	179449931	C	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56836	p.A18946P	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				215	0	0	151	43	22.1649
TTN	0	genome.wustl.edu	37	2	179485111	179485111	+	Silent	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	179485111	179485111	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.38433	p.K12811	1.000	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				101	0	0	51	28	35.443
TTN	0	genome.wustl.edu	37	2	179595319	179595319	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	179595319	179595319	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.14209	p.L4737M	0.966	pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				113	1	0.877193	50	26	34.2105
TTN	0	genome.wustl.edu	37	2	179632580	179632580	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	179632580	179632580	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.9377	p.K3126T	0.972	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				73	0	0	45	19	29.6875
APOB	0	genome.wustl.edu	37	2	21226009	21226009	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	21226009	21226009	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.12285	p.L4095	0.054	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				167	0	0	83	26	23.8532
USP37	0	genome.wustl.edu	37	2	219339499	219339499	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	219339499	219339499	C	G	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.2153	p.R718T	1.000	pfam_Peptidase_C19/C67,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				47	0	0	25	7	21.875
PAX3	0	genome.wustl.edu	37	2	223161818	223161818	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	223161818	223161818	A	G	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.200	p.I67T	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,pfscan_Paired_dom,prints_Paired_dom	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				35	0	0	20	11	35.4839
ACKR3	0	genome.wustl.edu	37	2	237489897	237489897	+	Silent	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	237489897	237489897	C	G	SNP	ACKR3	ENST00000272928	human	ensembl	74_37	+1	known	silent	c.789	p.V263	0.811	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Formyl_pep_rcpt	-	no_errors	ACKR3	HGNC	ENSG00000144476				155	0	0	101	42	29.3706
PER2	0	genome.wustl.edu	37	2	239161846	239161846	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	239161846	239161846	C	G	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.2818	p.E940Q	0.003	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				97	0	0	52	26	33.3333
C2orf44	0	genome.wustl.edu	37	2	24253804	24253804	+	Nonstop_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	24253804	24253804	C	G	SNP	C2orf44	ENST00000295148	human	ensembl	74_37	-1	known	nonstop	c.2165	p.*722S	0.001	NULL	NULL	-	no_errors	C2orf44	HGNC	ENSG00000163026				59	0	0	15	8	34.7826
ANKRD20A8P	0	genome.wustl.edu	37	2	95522772	95522772	+	RNA	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	95522772	95522772	T	C	SNP	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				94	0	0	57	4	6.55738
FRG1B	0	genome.wustl.edu	37	20	29625941	29625941	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	20	29625941	29625941	A	T	SNP	FRG1B	ENST00000278882	human	ensembl	74_37	+1	known	missense	c.185	p.D62V	1.000	pfam_FRG1,superfamily_Actin_cross-linking	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531				106	0	0	82	6	6.81818
SGK2	0	genome.wustl.edu	37	20	42199271	42199271	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	20	42199271	42199271	G	A	SNP	SGK2	ENST00000341458	human	ensembl	74_37	+1	known	silent	c.555	p.L185	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK2	HGNC	ENSG00000101049				90	0	0	90	19	17.4312
CSE1L	0	genome.wustl.edu	37	20	47712900	47712900	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	20	47712900	47712900	G	A	SNP	CSE1L	ENST00000262982	human	ensembl	74_37	+1	known	silent	c.2841	p.V947	1.000	pfam_CAS_CSE1_C,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Cse1,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207				66	0	0	61	26	29.8851
NCAM2	0	genome.wustl.edu	37	21	22696742	22696742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	21	22696742	22696742	C	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.659	p.A220V	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				76	0	0	35	26	42.623
TIAM1	0	genome.wustl.edu	37	21	32624209	32624209	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	21	32624209	32624209	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.1260	p.P420	0.896	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				140	0	0	32	54	62.7907
CCT8L2	0	genome.wustl.edu	37	22	17072615	17072615	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	22	17072615	17072615	G	T	SNP	CCT8L2	ENST00000359963	human	ensembl	74_37	-1	known	missense	c.826	p.Q276K	0.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1	-	no_errors	CCT8L2	HGNC	ENSG00000198445				166	0	0	125	39	23.7805
ENSG00000161103	0	genome.wustl.edu	37	22	18846113	18846113	+	RNA	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	22	18846113	18846113	C	T	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				26	0	0	26	3	10.3448
SEPT5	0	genome.wustl.edu	37	22	19709185	19709185	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	22	19709185	19709185	T	C	SNP	SEPT5	ENST00000383045	human	ensembl	74_37	+1	known	missense	c.767	p.I256T	0.949	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT5	HGNC	ENSG00000184702				78	0	0	74	35	32.1101
BMS1P20	0	genome.wustl.edu	37	22	22661478	22661478	+	RNA	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	22	22661478	22661478	T	G	SNP	BMS1P20	ENST00000426066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	BMS1P20	HGNC	ENSG00000236850				71	0	0	65	7	9.72222
POM121L9P	0	genome.wustl.edu	37	22	24659741	24659741	+	RNA	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	22	24659741	24659741	G	A	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				20	0	0	29	5	14.7059
TF	0	genome.wustl.edu	37	3	133494371	133494371	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	133494371	133494371	G	A	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	silent	c.1782	p.A594	0.000	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513				198	0	0	125	47	27.3256
CEP63	0	genome.wustl.edu	37	3	134226057	134226057	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	134226057	134226057	G	A	SNP	CEP63	ENST00000337090	human	ensembl	74_37	+1	known	missense	c.151	p.E51K	0.987	NULL	NULL	-	no_errors	CEP63	HGNC	ENSG00000182923				71	0	0	58	19	24.6753
ARHGEF26	0	genome.wustl.edu	37	3	153847444	153847444	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	153847444	153847444	A	C	SNP	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	missense	c.1205	p.K402T	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				21	0	0	9	7	43.75
PLD1	0	genome.wustl.edu	37	3	171455827	171455827	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	171455827	171455827	G	A	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	silent	c.15	p.N5	0.097	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				47	0	0	29	17	36.9565
ZCWPW2	0	genome.wustl.edu	37	3	28562499	28562499	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	28562499	28562499	A	C	SNP	ZCWPW2	ENST00000383768	human	ensembl	74_37	+1	known	missense	c.801	p.E267D	0.897	NULL	pfam_Znf_CW,pfam_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_CW	-	no_errors	ZCWPW2	HGNC	ENSG00000206559				40	0	0	23	10	30.303
POMGNT2	0	genome.wustl.edu	37	3	43121515	43121515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	43121515	43121515	C	T	SNP	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	missense	c.1409	p.G470E	0.122	NULL	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647				67	0	0	45	23	33.8235
PARP3	0	genome.wustl.edu	37	3	51981840	51981840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	51981840	51981840	C	T	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	missense	c.1382	p.T461M	0.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880				281	0	0	172	25	12.6904
VGLL3	0	genome.wustl.edu	37	3	86996204	86996204	+	Silent	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	86996204	86996204	T	C	SNP	VGLL3	ENST00000398399	human	ensembl	74_37	-1	known	silent	c.951	p.Q317	1.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538				68	0	0	39	15	27.7778
COL8A1	0	genome.wustl.edu	37	3	99514979	99514979	+	Silent	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	3	99514979	99514979	A	G	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	silent	c.2234	p.*745	0.570	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				30	0	0	14	8	36.3636
PCDH10	0	genome.wustl.edu	37	4	134071772	134071772	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	4	134071772	134071772	C	T	SNP	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	silent	c.477	p.Y159	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650				122	0	0	39	32	45.0704
USP38	0	genome.wustl.edu	37	4	144106705	144106705	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	4	144106705	144106705	C	G	SNP	USP38	ENST00000307017	human	ensembl	74_37	+1	known	missense	c.102	p.D34E	0.967	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP38	HGNC	ENSG00000170185				78	0	0	25	20	44.4444
WDFY3	0	genome.wustl.edu	37	4	85661406	85661406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	4	85661406	85661406	G	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	missense	c.6398	p.P2133L	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				97	0	0	31	23	42.5926
APC	0	genome.wustl.edu	37	5	112111436	112111436	+	Splice_Site	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	112111436	112111436	T	G	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	splice_site	c.531+2	e4+2	1.000	-	-	-	no_errors	APC	HGNC	ENSG00000134982				47	0	0	19	18	48.6486
PCDHA12	0	genome.wustl.edu	37	5	140257073	140257073	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	140257073	140257073	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.2016	p.N672	0.001	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				109	0	0	44	34	43.5897
CAMK2A	0	genome.wustl.edu	37	5	149636154	149636154	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	149636154	149636154	C	T	SNP	CAMK2A	ENST00000398376	human	ensembl	74_37	-1	known	silent	c.393	p.V131	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ca/CaM-dep_prot_kinase-assoc,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK2A	HGNC	ENSG00000070808				48	0	0	25	2	7.40741
G3BP1	0	genome.wustl.edu	37	5	151179475	151179475	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	151179475	151179475	C	G	SNP	G3BP1	ENST00000356245	human	ensembl	74_37	+1	known	missense	c.869	p.S290C	1.000	NULL	pfam_NTF2,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	G3BP1	HGNC	ENSG00000145907				76	0	0	19	7	26.9231
GZMK	0	genome.wustl.edu	37	5	54327247	54327247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	54327247	54327247	A	C	SNP	GZMK	ENST00000231009	human	ensembl	74_37	+1	known	missense	c.419	p.K140T	0.007	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	GZMK	HGNC	ENSG00000113088				73	0	0	42	31	42.4658
LAMA4	0	genome.wustl.edu	37	6	112454672	112454672	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	112454672	112454672	A	C	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.3575	p.L1192R	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				109	0	0	59	11	15.7143
TMEM200A	0	genome.wustl.edu	37	6	130762633	130762633	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	130762633	130762633	T	A	SNP	TMEM200A	ENST00000296978	human	ensembl	74_37	+1	known	missense	c.1066	p.S356T	0.000	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200A	HGNC	ENSG00000164484				84	0	0	27	14	34.1463
SYNE1	0	genome.wustl.edu	37	6	152804233	152804233	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	152804233	152804233	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.1337	p.L446R	0.996	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				283	0	0	151	77	33.7719
THBS2	0	genome.wustl.edu	37	6	169623561	169623561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	169623561	169623561	C	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.2783	p.R928Q	1.000	pfam_Thrombospondin_3-like_rpt	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				67	0	0	33	22	40
HIST1H4E	0	genome.wustl.edu	37	6	26204976	26204976	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	26204976	26204976	T	C	SNP	HIST1H4E	ENST00000360441	human	ensembl	74_37	+1	known	missense	c.104	p.I35T	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4E	HGNC	ENSG00000198518				141	0	0	102	6	5.55556
FAM50B	0	genome.wustl.edu	37	6	3850759	3850759	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	3850759	3850759	C	T	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	silent	c.714	p.I238	0.999	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				99	0	0	46	26	36.1111
IMPG1	0	genome.wustl.edu	37	6	76751661	76751661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	76751661	76751661	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.250	p.E84K	1.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				54	0	0	36	17	32.0755
UFL1	0	genome.wustl.edu	37	6	96969689	96969689	+	RNA	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	6	96969689	96969689	C	T	SNP	UFL1	ENST00000461673	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.055	-	-	-	no_errors	UFL1	HGNC	ENSG00000014123				9	0	0	5	4	44.4444
LAMB4	0	genome.wustl.edu	37	7	107704215	107704215	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	107704215	107704215	T	C	SNP	LAMB4	ENST00000205386	human	ensembl	74_37	-1	known	missense	c.3052	p.T1018A	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB4	HGNC	ENSG00000091128				156	0	0	76	33	30.2752
PDIA4	0	genome.wustl.edu	37	7	148702994	148702994	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	148702994	148702994	C	G	SNP	PDIA4	ENST00000286091	human	ensembl	74_37	-1	known	missense	c.1283	p.R428T	0.984	pirsf_Protein_diS-isomerase_A4,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660				72	0	0	40	19	32.2034
POM121L12	0	genome.wustl.edu	37	7	53104250	53104250	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	53104250	53104250	T	C	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.886	p.S296P	0.002	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				69	0	0	48	31	39.2405
ZNF727	0	genome.wustl.edu	37	7	63529967	63529967	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	63529967	63529967	A	C	SNP	ZNF727	ENST00000550760	human	ensembl	74_37	+1	known	missense	c.206	p.K69T	0.085	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF727	HGNC	ENSG00000257482				11	0	0	11	3	21.4286
MDH2	0	genome.wustl.edu	37	7	75687381	75687381	+	Silent	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	75687381	75687381	C	T	SNP	MDH2	ENST00000315758	human	ensembl	74_37	+1	known	silent	c.414	p.C138	0.998	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_type1	pfam_Lactate/malate_DH_C,pfam_Lactate/malate_DH_N,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,tigrfam_Malate_DH_type1	-	no_errors	MDH2	HGNC	ENSG00000146701				62	0	0	25	17	40.4762
PCLO	0	genome.wustl.edu	37	7	82544694	82544694	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	82544694	82544694	A	C	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12608	p.F4203C	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				38	0	0	28	9	24.3243
COL1A2	0	genome.wustl.edu	37	7	94055358	94055358	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	7	94055358	94055358	C	G	SNP	COL1A2	ENST00000297268	human	ensembl	74_37	+1	known	missense	c.2992	p.P998A	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fib_collagen_C	-	no_errors	COL1A2	HGNC	ENSG00000164692				65	0	0	75	5	6.25
SPAG1	0	genome.wustl.edu	37	8	101252666	101252666	+	Silent	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	101252666	101252666	A	C	SNP	SPAG1	ENST00000251809	human	ensembl	74_37	+1	known	silent	c.2316	p.A772	0.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SPAG1	HGNC	ENSG00000104450				94	0	0	36	26	41.9355
RP1L1	0	genome.wustl.edu	37	8	10465067	10465067	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	10465067	10465067	C	G	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.6541	p.E2181Q	0.001	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				433	0	0	161	123	43.3099
DCSTAMP	0	genome.wustl.edu	37	8	105361304	105361304	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	105361304	105361304	T	C	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.524	p.L175P	0.970	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				123	0	0	88	48	35.2941
CSMD3	0	genome.wustl.edu	37	8	114111124	114111124	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	114111124	114111124	C	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.778	p.E260Q	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				27	0	0	37	17	31.4815
EPPK1	0	genome.wustl.edu	37	8	144941839	144941839	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	144941839	144941839	G	A	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.5583	p.N1861	0.985	NULL	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				124	0	0	135	13	8.78378
TONSL	0	genome.wustl.edu	37	8	145666384	145666384	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	145666384	145666384	C	G	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	missense	c.976	p.D326H	0.487	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949				106	0	0	110	27	19.708
C8orf34	0	genome.wustl.edu	37	8	69552690	69552690	+	Silent	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	69552690	69552690	T	G	SNP	C8orf34	ENST00000518698	human	ensembl	74_37	+1	known	silent	c.1185	p.T395	0.973	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C8orf34	HGNC	ENSG00000165084				60	0	0	41	11	21.1538
CNGB3	0	genome.wustl.edu	37	8	87588309	87588309	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	8	87588309	87588309	T	C	SNP	CNGB3	ENST00000320005	human	ensembl	74_37	-1	known	missense	c.2153	p.D718G	0.192	NULL	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB3	HGNC	ENSG00000170289				25	0	0	17	13	43.3333
FKTN	0	genome.wustl.edu	37	9	108358939	108358939	+	Splice_Site	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	108358939	108358939	G	A	SNP	FKTN	ENST00000223528	human	ensembl	74_37	+1	known	splice_site	c.165+1	e2+1	1.000	-	-	-	no_errors	FKTN	HGNC	ENSG00000106692				51	0	0	24	9	27.2727
TMEM245	0	genome.wustl.edu	37	9	111870817	111870817	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	111870817	111870817	C	A	SNP	TMEM245	ENST00000374586	human	ensembl	74_37	-1	known	missense	c.613	p.V205F	1.000	NULL	pfam_UPF0118	-	no_errors	TMEM245	HGNC	ENSG00000106771				53	0	0	38	16	29.6296
ODF2	0	genome.wustl.edu	37	9	131262403	131262403	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	131262403	131262403	G	A	SNP	ODF2	ENST00000434106	human	ensembl	74_37	+1	known	missense	c.2359	p.E787K	1.000	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811				153	0	0	94	29	23.5772
ADAMTSL2	0	genome.wustl.edu	37	9	136405731	136405731	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	136405731	136405731	C	T	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.751	p.H251Y	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				31	0	0	39	11	22
LOC100996870	0	genome.wustl.edu	37	9	66458030	66458030	+	RNA	SNP	G	G	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	66458030	66458030	G	C	SNP	LOC100996870	ENST00000452184	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.031	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				21	0	0	39	4	9.30233
LOC100996870	0	genome.wustl.edu	37	9	66459862	66459862	+	RNA	SNP	T	T	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	66459862	66459862	T	C	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.133	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				19	0	0	16	4	20
LOC100996870	0	genome.wustl.edu	37	9	66459863	66459863	+	RNA	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	66459863	66459863	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.135	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				18	0	0	16	3	15.7895
TRPM6	0	genome.wustl.edu	37	9	77339623	77339623	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	77339623	77339623	G	T	SNP	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	missense	c.5987	p.S1996Y	0.880	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				70	0	0	64	5	7.24638
SPATA31D1	0	genome.wustl.edu	37	9	84609013	84609013	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	84609013	84609013	T	G	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.3628	p.L1210V	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				135	0	0	80	39	32.7731
CT47B1	0	genome.wustl.edu	37	X	120009063	120009063	+	Silent	SNP	C	C	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	X	120009063	120009063	C	A	SNP	CT47B1	ENST00000371311	human	ensembl	74_37	-1	known	silent	c.462	p.G154	0.000	NULL	NULL	-	no_errors	CT47B1	HGNC	ENSG00000236446				94	0	0	66	10	13.1579
FIGF	0	genome.wustl.edu	37	X	15365304	15365304	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	X	15365304	15365304	A	G	SNP	FIGF	ENST00000297904	human	ensembl	74_37	-1	known	missense	c.920	p.F307S	0.997	NULL	pfam_PDGF/VEGF_dom,smart_PDGF/VEGF_dom,pfscan_PDGF/VEGF_dom	-	no_errors	FIGF	HGNC	ENSG00000165197				89	0	0	56	36	39.1304
GPR64	0	genome.wustl.edu	37	X	19024132	19024132	+	Silent	SNP	G	G	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	X	19024132	19024132	G	A	SNP	GPR64	ENST00000379869	human	ensembl	74_37	-1	known	silent	c.1827	p.F609	0.996	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698				35	0	0	12	21	63.6364
DMD	0	genome.wustl.edu	37	X	31496452	31496452	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	X	31496452	31496452	A	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.8708	p.L2903R	0.981	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				62	0	0	14	19	57.5758
NLGN4X	0	genome.wustl.edu	37	X	5821801	5821801	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	X	5821801	5821801	G	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	nonsense	c.978	p.C326*	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				58	0	0	82	21	20.3883
OBSCN	0	genome.wustl.edu	37	1	228526004	228526004	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	1	228526004	228526004	G	-	DEL	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	frame_shift_del	c.17015	p.A5674fs	1.000	superfamily_DH-domain	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				13	0	0	9	11	55
RB1	0	genome.wustl.edu	37	13	48937043	48937046	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	13	48937043	48937046	ACAA	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.811_814	p.T271fs	1.000:1.000:1.000:1.000	NULL	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				82	0	0	47	21	30.8824
DNAH3	0	genome.wustl.edu	37	16	20998758	20998759	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	16	20998758	20998759	-	T	INS	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	frame_shift_ins	c.6895_6894	p.C2298fs	0.544:0.534	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				76	0	0	47	28	37.3333
ZNF429	0	genome.wustl.edu	37	19	21719296	21719297	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	21719296	21719297	-	TA	INS	ZNF429	ENST00000358491	human	ensembl	74_37	+1	novel	frame_shift_ins	c.441_442	p.D147fs	0.005:0.002	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF429	HGNC	ENSG00000197013				58	0	0	46	7	13.2075
SNRNP70	0	genome.wustl.edu	37	19	49589818	49589818	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	19	49589818	49589818	G	-	DEL	SNRNP70	ENST00000598441	human	ensembl	74_37	+1	known	frame_shift_del	c.147	p.D50fs	1.000	pfam_U1snRNP70_N	pfam_U1snRNP70_N,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SNRNP70	HGNC	ENSG00000104852				295	0	0	186	75	28.7356
ENSG00000238295	0	genome.wustl.edu	37	2	178210682	178210682	+	RNA	DEL	A	A	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	178210682	178210682	A	-	DEL	ENSG00000238295	ENST00000459157	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.012	-	-	-	no_errors	snoU13	RFAM	ENSG00000238295				21	0	0	9	6	40
RBM45	0	genome.wustl.edu	37	2	178980994	178980994	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	2	178980994	178980994	C	-	DEL	RBM45	ENST00000286070	human	ensembl	74_37	+1	known	frame_shift_del	c.306	p.F102fs	0.997	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM45	HGNC	ENSG00000155636				113	0	0	58	12	17.1429
BRWD1	0	genome.wustl.edu	37	21	40649222	40649223	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	21	40649222	40649223	-	A	INS	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	frame_shift_ins	c.1059_1058	p.L353fs	1.000:1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				28	0	0	23	17	42.5
NME5	0	genome.wustl.edu	37	5	137451361	137451362	+	RNA	INS	-	-	T			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	137451361	137451362	-	T	INS	NME5	ENST00000514481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	NME5	HGNC	ENSG00000112981				44	0	0	19	2	9.52381
TBC1D9B	0	genome.wustl.edu	37	5	179290809	179290809	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	5	179290809	179290809	C	-	DEL	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	frame_shift_del	c.3392	p.G1131fs	0.033	NULL	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				179	0	0	91	7	7.14286
ENSG00000225411	0	genome.wustl.edu	37	9	68398095	68398095	+	RNA	DEL	C	C	-			TCGA-BR-A452-01A-91D-A25D-08	TCGA-BR-A452-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31fb05d-9916-4ea7-a472-6a3e6d4eb206	d5a5bd89-908e-4538-8854-df337cd9a8d0	9	68398095	68398095	C	-	DEL	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411				12	0	0	15	3	16.6667
