Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SHE	0	genome.wustl.edu	37	1	154474183	154474183	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	154474183	154474183	C	T	SNP	SHE	ENST00000304760	human	ensembl	74_37	-1	known	missense	c.320	p.S107N	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291				19	0	0	13	3	18.75
PTPRC	0	genome.wustl.edu	37	1	198676006	198676006	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	198676006	198676006	A	T	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	nonsense	c.829	p.K277*	0.000	pirsf_Leukocyte_common_ag,pfam_Leukocyte_common_ag	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237				67	0	0	80	9	10.1124
PRKCZ	0	genome.wustl.edu	37	1	2082347	2082347	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	2082347	2082347	T	C	SNP	PRKCZ	ENST00000378567	human	ensembl	74_37	+1	known	missense	c.806	p.V269A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_PKC_zeta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCZ	HGNC	ENSG00000067606				73	0	0	52	4	7.14286
DIEXF	0	genome.wustl.edu	37	1	210008472	210008472	+	Silent	SNP	T	T	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	210008472	210008472	T	A	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	silent	c.615	p.A205	0.001	NULL	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				53	0	0	63	4	5.97015
ARID1A	0	genome.wustl.edu	37	1	27057730	27057730	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	27057730	27057730	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.1438	p.Q480*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				285	1	0.34965	276	21	7.07071
C1orf109	0	genome.wustl.edu	37	1	38155399	38155399	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	38155399	38155399	C	T	SNP	C1orf109	ENST00000358011	human	ensembl	74_37	-1	known	missense	c.154	p.A52T	0.000	NULL	NULL	-	no_errors	C1orf109	HGNC	ENSG00000116922				96	0	0	54	4	6.89655
USP24	0	genome.wustl.edu	37	1	55619860	55619860	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	55619860	55619860	C	A	SNP	USP24	ENST00000407756	human	ensembl	74_37	-1	known	missense	c.1312	p.D438Y	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,superfamily_ARM-type_fold,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Peptidase_C19/C67	-	no_errors	USP24	HGNC	ENSG00000162402				26	0	0	32	5	13.5135
FPGT-TNNI3K	0	genome.wustl.edu	37	1	75009634	75009634	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	1	75009634	75009634	C	T	SNP	FPGT-TNNI3K	ENST00000557284	human	ensembl	74_37	+1	known	nonsense	c.2818	p.R940*	0.914	NULL	pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FPGT-TNNI3K	HGNC	ENSG00000259030				43	0	0	29	3	9.375
HPS6	0	genome.wustl.edu	37	10	103826207	103826207	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	10	103826207	103826207	T	C	SNP	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	missense	c.976	p.C326R	1.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				112	0	0	55	3	5.17241
CCDC147	0	genome.wustl.edu	37	10	106159127	106159127	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	10	106159127	106159127	C	A	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.1684	p.Q562K	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051				33	0	0	23	4	14.8148
GPR158	0	genome.wustl.edu	37	10	25886899	25886899	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	10	25886899	25886899	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	missense	c.2344	p.A782T	0.128	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025				111	0	0	106	7	6.19469
WAPAL	0	genome.wustl.edu	37	10	88213535	88213535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	10	88213535	88213535	C	T	SNP	WAPAL	ENST00000298767	human	ensembl	74_37	-1	known	missense	c.2711	p.S904N	1.000	pfam_WAPL_prot,superfamily_ARM-type_fold	pfam_WAPL_prot,superfamily_ARM-type_fold	-	no_errors	WAPAL	HGNC	ENSG00000062650				38	0	0	45	3	6.25
NAV2	0	genome.wustl.edu	37	11	20113856	20113856	+	Silent	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	11	20113856	20113856	G	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	silent	c.5934	p.P1978	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				120	0	0	126	7	5.26316
GYLTL1B	0	genome.wustl.edu	37	11	45949117	45949117	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	11	45949117	45949117	C	A	SNP	GYLTL1B	ENST00000325468	human	ensembl	74_37	+1	known	missense	c.1577	p.P526H	1.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYLTL1B	HGNC	ENSG00000165905				180	0	0	129	9	6.52174
PATL1	0	genome.wustl.edu	37	11	59420345	59420345	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	11	59420345	59420345	C	A	SNP	PATL1	ENST00000300146	human	ensembl	74_37	-1	known	missense	c.1268	p.S423I	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889				57	0	0	46	4	8
TPCN2	0	genome.wustl.edu	37	11	68822759	68822759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	11	68822759	68822759	G	A	SNP	TPCN2	ENST00000294309	human	ensembl	74_37	+1	known	missense	c.368	p.G123D	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341				113	0	0	55	3	5.17241
KRT76	0	genome.wustl.edu	37	12	53169377	53169377	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	12	53169377	53169377	G	T	SNP	KRT76	ENST00000332411	human	ensembl	74_37	-1	known	missense	c.610	p.L204M	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT76	HGNC	ENSG00000185069				117	0	0	81	7	7.95455
MIP	0	genome.wustl.edu	37	12	56847476	56847476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	12	56847476	56847476	C	T	SNP	MIP	ENST00000257979	human	ensembl	74_37	-1	known	missense	c.424	p.V142M	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	MIP	HGNC	ENSG00000135517				66	0	0	30	3	9.09091
PTPRB	0	genome.wustl.edu	37	12	70956659	70956659	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	12	70956659	70956659	T	A	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.4133	p.E1378V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				57	0	0	58	8	12.1212
PPFIA2	0	genome.wustl.edu	37	12	81741521	81741521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	12	81741521	81741521	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.2023	p.E675K	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				81	0	0	80	5	5.88235
FREM2	0	genome.wustl.edu	37	13	39263660	39263660	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	13	39263660	39263660	C	T	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.2179	p.R727C	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				64	0	0	49	3	5.76923
CYP46A1	0	genome.wustl.edu	37	14	100173033	100173033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	14	100173033	100173033	G	A	SNP	CYP46A1	ENST00000261835	human	ensembl	74_37	+1	known	missense	c.493	p.V165M	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP46A1	HGNC	ENSG00000036530				86	0	0	54	3	5.26316
C14orf1	0	genome.wustl.edu	37	14	76118161	76118161	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	14	76118161	76118161	C	T	SNP	C14orf1	ENST00000256319	human	ensembl	74_37	-1	known	missense	c.296	p.G99E	0.986	pfam_Erg28	pfam_Erg28	-	no_errors	C14orf1	HGNC	ENSG00000133935				86	0	0	71	5	6.57895
RYR3	0	genome.wustl.edu	37	15	34078174	34078174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	15	34078174	34078174	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.9580	p.R3194C	1.000	superfamily_ARM-type_fold	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				189	0	0	130	8	5.7971
HCN4	0	genome.wustl.edu	37	15	73616535	73616535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	15	73616535	73616535	G	A	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.2038	p.R680C	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				72	0	0	71	5	6.57895
PTX4	0	genome.wustl.edu	37	16	1537353	1537353	+	Silent	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	1537353	1537353	G	T	SNP	PTX4	ENST00000447419	human	ensembl	74_37	-1	known	silent	c.760	p.R254	0.005	NULL	pfam_Pentaxin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	PTX4	HGNC	ENSG00000251692				72	0	0	37	3	7.5
IRX6	0	genome.wustl.edu	37	16	55363168	55363168	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	55363168	55363168	G	A	SNP	IRX6	ENST00000290552	human	ensembl	74_37	+1	known	silent	c.1278	p.P426	0.003	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX6	HGNC	ENSG00000159387				112	0	0	68	7	9.33333
POLR2C	0	genome.wustl.edu	37	16	57496981	57496981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	57496981	57496981	C	T	SNP	POLR2C	ENST00000219252	human	ensembl	74_37	+1	known	missense	c.127	p.P43S	0.999	pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	pfam_DNA-dir_RNA_pol_insert,pfam_RBP11-like_dimer,superfamily_DNA-dir_RNA_pol_insert,superfamily_RBP11-like_dimer,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR2C	HGNC	ENSG00000102978				48	0	0	32	2	5.88235
SLC12A4	0	genome.wustl.edu	37	16	67986303	67986303	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	67986303	67986303	A	G	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	missense	c.707	p.I236T	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				85	0	0	76	5	6.17284
CDH1	0	genome.wustl.edu	37	16	68847398	68847398	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	68847398	68847398	G	T	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.1320	p.K440N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				269	1	0.37037	242	22	8.33333
FANCA	0	genome.wustl.edu	37	16	89857935	89857935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	89857935	89857935	G	A	SNP	FANCA	ENST00000389301	human	ensembl	74_37	-1	known	missense	c.1235	p.A412V	0.674	NULL	pfam_Fanconia,prints_Fanconia	-	no_errors	FANCA	HGNC	ENSG00000187741				36	0	0	18	4	18.1818
DNAH2	0	genome.wustl.edu	37	17	7646393	7646393	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	17	7646393	7646393	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.1837	p.R613W	0.972	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914				90	0	0	38	4	9.52381
ODF4	0	genome.wustl.edu	37	17	8243564	8243564	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	17	8243564	8243564	G	A	SNP	ODF4	ENST00000328248	human	ensembl	74_37	+1	known	silent	c.195	p.P65	0.000	NULL	NULL	-	no_errors	ODF4	HGNC	ENSG00000184650				41	0	0	31	5	13.8889
PIK3R6	0	genome.wustl.edu	37	17	8706636	8706636	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	17	8706636	8706636	C	T	SNP	PIK3R6	ENST00000311434	human	ensembl	74_37	-1	known	silent	c.2217	p.K739	0.344	pfam_PI3K_1B_gamma_p101_su	pfam_PI3K_1B_gamma_p101_su	-	no_errors	PIK3R6	HGNC	ENSG00000174083				79	0	0	51	4	7.27273
WDR16	0	genome.wustl.edu	37	17	9511501	9511501	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	17	9511501	9511501	G	A	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	silent	c.849	p.L283	0.999	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				49	0	0	25	2	7.40741
ALPK2	0	genome.wustl.edu	37	18	56246747	56246747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	18	56246747	56246747	C	T	SNP	ALPK2	ENST00000361673	human	ensembl	74_37	-1	known	missense	c.1261	p.G421S	0.001	NULL	pfam_MHCK_EF2_kinase,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase,pfscan_Ig-like_dom	-	no_errors	ALPK2	HGNC	ENSG00000198796				98	0	0	74	5	6.32911
CDH20	0	genome.wustl.edu	37	18	59221602	59221602	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	18	59221602	59221602	G	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.2080	p.A694S	0.897	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				73	0	0	71	4	5.33333
CTDP1	0	genome.wustl.edu	37	18	77456043	77456043	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	18	77456043	77456043	C	T	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	silent	c.465	p.S155	0.990	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				34	0	0	32	6	15.7895
ZNF44	0	genome.wustl.edu	37	19	12384413	12384413	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	12384413	12384413	G	A	SNP	ZNF44	ENST00000393337	human	ensembl	74_37	-1	known	silent	c.801	p.H267	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF44	HGNC	ENSG00000197857				102	0	0	130	8	5.7971
ZNF546	0	genome.wustl.edu	37	19	40519650	40519650	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	40519650	40519650	C	A	SNP	ZNF546	ENST00000347077	human	ensembl	74_37	+1	known	missense	c.473	p.T158K	0.080	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF546	HGNC	ENSG00000187187				22	0	0	52	3	5.45455
IRGC	0	genome.wustl.edu	37	19	44223776	44223776	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	44223776	44223776	C	T	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	missense	c.1066	p.R356W	0.913	NULL	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449				57	0	0	36	2	5.26316
ZNF550	0	genome.wustl.edu	37	19	58058384	58058384	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	58058384	58058384	G	A	SNP	ZNF550	ENST00000376230	human	ensembl	74_37	-1	known	missense	c.1228	p.R410C	0.004	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF550	HGNC	ENSG00000251369				94	0	0	57	4	6.55738
ZNF814	0	genome.wustl.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	58385546	58385546	G	T	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	missense	c.1212	p.D404E	0.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				8	0	0	13	3	18.75
ADAMTS10	0	genome.wustl.edu	37	19	8668717	8668717	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	19	8668717	8668717	C	A	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.487	p.G163C	0.234	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				58	0	0	41	3	6.81818
MYO7B	0	genome.wustl.edu	37	2	128377979	128377979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	128377979	128377979	C	T	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.3385	p.R1129W	0.986	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				71	0	0	42	6	12.5
TTN	0	genome.wustl.edu	37	2	179395780	179395780	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	179395780	179395780	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97858	p.I32620F	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				270	0	0	243	13	5.07812
UGT1A8	0	genome.wustl.edu	37	2	234669274	234669274	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	234669274	234669274	A	T	SNP	UGT1A8	ENST00000305208	human	ensembl	74_37	+1	known	missense	c.341	p.K114M	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A8	HGNC	ENSG00000242366				127	0	0	91	5	5.20833
MTERFD2	0	genome.wustl.edu	37	2	242035431	242035431	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	242035431	242035431	G	A	SNP	MTERFD2	ENST00000241527	human	ensembl	74_37	-1	known	silent	c.1128	p.D376	0.027	NULL	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERFD2	HGNC	ENSG00000122085				112	0	0	100	8	7.40741
TSSC1	0	genome.wustl.edu	37	2	3341900	3341900	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	3341900	3341900	G	A	SNP	TSSC1	ENST00000382125	human	ensembl	74_37	-1	known	silent	c.147	p.D49	0.414	NULL	pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389				37	0	0	42	3	6.66667
LRRTM1	0	genome.wustl.edu	37	2	80530382	80530382	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	2	80530382	80530382	T	C	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.563	p.K188R	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951				85	0	0	89	5	5.31915
CPXM1	0	genome.wustl.edu	37	20	2777046	2777046	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	20	2777046	2777046	C	A	SNP	CPXM1	ENST00000380605	human	ensembl	74_37	-1	known	missense	c.1089	p.E363D	1.000	pfam_Peptidase_M14,prints_Peptidase_M14	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	CPXM1	HGNC	ENSG00000088882				116	0	0	81	5	5.81395
RBM12	0	genome.wustl.edu	37	20	34243149	34243149	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	20	34243149	34243149	G	A	SNP	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	silent	c.96	p.G32	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462				49	0	0	31	3	8.82353
KRTAP12-2	0	genome.wustl.edu	37	21	46086407	46086407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	21	46086407	46086407	C	T	SNP	KRTAP12-2	ENST00000360770	human	ensembl	74_37	-1	known	missense	c.397	p.V133I	0.003	NULL	pfam_KRTAP_PMG	-	no_errors	KRTAP12-2	HGNC	ENSG00000221864				102	0	0	49	6	10.9091
COL18A1	0	genome.wustl.edu	37	21	46875460	46875460	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	21	46875460	46875460	T	C	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	missense	c.16	p.C6R	0.795	NULL	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871				85	0	0	65	4	5.7971
ARFGAP3	0	genome.wustl.edu	37	22	43195060	43195060	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	22	43195060	43195060	G	A	SNP	ARFGAP3	ENST00000263245	human	ensembl	74_37	-1	known	silent	c.1518	p.V506	0.993	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP3	HGNC	ENSG00000242247				190	0	0	208	15	6.72646
SBF1	0	genome.wustl.edu	37	22	50900900	50900900	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	22	50900900	50900900	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	silent	c.2130	p.E710	0.988	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				85	0	0	79	5	5.95238
KCNMB3	0	genome.wustl.edu	37	3	178962330	178962330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	3	178962330	178962330	T	C	SNP	KCNMB3	ENST00000314235	human	ensembl	74_37	-1	known	missense	c.412	p.K138E	0.978	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB3	HGNC	ENSG00000171121				124	0	0	70	7	9.09091
SATB1	0	genome.wustl.edu	37	3	18390940	18390940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	3	18390940	18390940	C	T	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.2110	p.E704K	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				167	1	0.595238	93	14	13.0841
APOD	0	genome.wustl.edu	37	3	195295971	195295971	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	3	195295971	195295971	C	T	SNP	APOD	ENST00000343267	human	ensembl	74_37	-1	known	missense	c.370	p.D124N	1.000	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_Invtbrt_color,prints_Lipocalin	pfam_Lipocln_cytosolic_FA-bd_dom,pfam_Triabin_pallidipin/procalin,superfamily_Calycin-like,pirsf_Lipocalin_ApoD,prints_ApolipopD,prints_Invtbrt_color,prints_Lipocalin,prints_Lipocalin_bac	-	no_errors	APOD	HGNC	ENSG00000189058				116	0	0	84	6	6.66667
WDR17	0	genome.wustl.edu	37	4	177073081	177073081	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	4	177073081	177073081	T	A	SNP	WDR17	ENST00000280190	human	ensembl	74_37	+1	known	missense	c.2495	p.I832N	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC	ENSG00000150627				45	0	0	60	4	6.25
POLN	0	genome.wustl.edu	37	4	2082754	2082754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	4	2082754	2082754	G	A	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.2318	p.A773V	0.139	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997				100	0	0	67	4	5.6338
RGS12	0	genome.wustl.edu	37	4	3319265	3319265	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	4	3319265	3319265	G	A	SNP	RGS12	ENST00000344733	human	ensembl	74_37	+1	known	silent	c.1368	p.A456	0.104	NULL	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_PDZ,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_PTB/PI_dom,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_PDZ,pfscan_PTB/PI_dom,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS12	HGNC	ENSG00000159788				81	0	0	54	3	5.26316
SOWAHB	0	genome.wustl.edu	37	4	77817362	77817362	+	Silent	SNP	T	T	C			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	4	77817362	77817362	T	C	SNP	SOWAHB	ENST00000334306	human	ensembl	74_37	-1	known	silent	c.1641	p.L547	0.011	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHB	HGNC	ENSG00000186212				65	0	0	37	4	9.7561
FGF5	0	genome.wustl.edu	37	4	81188284	81188284	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	4	81188284	81188284	G	T	SNP	FGF5	ENST00000312465	human	ensembl	74_37	+1	known	missense	c.306	p.Q102H	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF5	HGNC	ENSG00000138675				82	0	0	59	6	9.23077
SNCAIP	0	genome.wustl.edu	37	5	121759300	121759300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	5	121759300	121759300	G	A	SNP	SNCAIP	ENST00000379533	human	ensembl	74_37	+1	known	missense	c.1009	p.A337T	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SNCAIP	HGNC	ENSG00000064692				64	0	0	54	4	6.89655
PCDHA7	0	genome.wustl.edu	37	5	140215247	140215247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	5	140215247	140215247	G	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.1279	p.A427T	0.992	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963				212	0	0	128	9	6.56934
PCDHB10	0	genome.wustl.edu	37	5	140572186	140572186	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	5	140572186	140572186	T	G	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.61	p.W21G	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				153	0	0	121	14	10.3704
ADCY2	0	genome.wustl.edu	37	5	7784525	7784525	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	5	7784525	7784525	C	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.2432	p.S811Y	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				50	0	0	76	4	5
C6orf25	0	genome.wustl.edu	37	6	31691520	31691520	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	6	31691520	31691520	C	A	SNP	C6orf25	ENST00000375806	human	ensembl	74_37	+1	known	missense	c.166	p.L56M	0.715	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				84	0	0	43	4	8.51064
NOTCH4	0	genome.wustl.edu	37	6	32188872	32188872	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	6	32188872	32188872	C	T	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	missense	c.682	p.G228S	0.303	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				68	0	0	51	3	5.55556
ZBTB22	0	genome.wustl.edu	37	6	33283022	33283022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	6	33283022	33283022	G	A	SNP	ZBTB22	ENST00000418724	human	ensembl	74_37	-1	known	missense	c.1672	p.R558C	1.000	smart_Znf_C2H2-like	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB22	HGNC	ENSG00000236104				100	0	0	68	4	5.55556
KCND2	0	genome.wustl.edu	37	7	119915599	119915599	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	119915599	119915599	C	T	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.913	p.R305C	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				60	0	0	57	3	5
OR2A5	0	genome.wustl.edu	37	7	143747810	143747810	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	143747810	143747810	G	T	SNP	OR2A5	ENST00000408906	human	ensembl	74_37	+1	known	missense	c.316	p.A106S	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A5	HGNC	ENSG00000221836				206	1	0.483092	124	14	10.1449
ZNF467	0	genome.wustl.edu	37	7	149461947	149461947	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	149461947	149461947	G	A	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	silent	c.1644	p.C548	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				62	0	0	24	4	14.2857
USP42	0	genome.wustl.edu	37	7	6189448	6189448	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	6189448	6189448	C	A	SNP	USP42	ENST00000306177	human	ensembl	74_37	+1	known	missense	c.1621	p.L541I	0.002	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP42	HGNC	ENSG00000106346				55	0	0	75	4	5.06329
COL28A1	0	genome.wustl.edu	37	7	7484115	7484115	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	7484115	7484115	C	T	SNP	COL28A1	ENST00000399429	human	ensembl	74_37	-1	known	silent	c.1515	p.E505	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m	-	no_errors	COL28A1	HGNC	ENSG00000215018				77	0	0	47	6	11.3208
DLC1	0	genome.wustl.edu	37	8	12973125	12973125	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	8	12973125	12973125	C	T	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.1390	p.G464S	1.000	pfam_SAM_2	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				46	0	0	37	3	7.5
SARDH	0	genome.wustl.edu	37	9	136597555	136597555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	136597555	136597555	C	T	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	missense	c.500	p.R167K	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				140	0	0	102	6	5.55556
FUT7	0	genome.wustl.edu	37	9	139925278	139925278	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	139925278	139925278	G	T	SNP	FUT7	ENST00000314412	human	ensembl	74_37	-1	known	missense	c.913	p.L305I	0.041	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT7	HGNC	ENSG00000180549				41	0	0	29	3	9.375
TAF1L	0	genome.wustl.edu	37	9	32634837	32634837	+	Silent	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	32634837	32634837	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	silent	c.741	p.T247	0.996	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				119	0	0	85	6	6.59341
FRMPD1	0	genome.wustl.edu	37	9	37707441	37707441	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	37707441	37707441	G	A	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.130	p.A44T	0.006	superfamily_PDZ	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				93	0	0	49	4	7.54717
AUH	0	genome.wustl.edu	37	9	93983132	93983132	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	93983132	93983132	C	T	SNP	AUH	ENST00000375731	human	ensembl	74_37	-1	known	silent	c.798	p.A266	0.794	NULL	pfam_Crotonase_core_superfam	-	no_errors	AUH	HGNC	ENSG00000148090				101	0	0	75	6	7.40741
CDC14B	0	genome.wustl.edu	37	9	99266039	99266039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	9	99266039	99266039	C	T	SNP	CDC14B	ENST00000375241	human	ensembl	74_37	-1	known	missense	c.1493	p.R498H	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14B	HGNC	ENSG00000081377				47	0	0	58	5	7.93651
DCAF12L1	0	genome.wustl.edu	37	X	125686436	125686436	+	Silent	SNP	C	C	T			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	X	125686436	125686436	C	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.156	p.A52	0.200	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				65	0	0	39	3	7.14286
CNGA2	0	genome.wustl.edu	37	X	150912737	150912737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	X	150912737	150912737	G	A	SNP	CNGA2	ENST00000329903	human	ensembl	74_37	+1	known	missense	c.1762	p.E588K	0.625	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA2	HGNC	ENSG00000183862				118	0	0	87	6	6.45161
MT1JP	0	genome.wustl.edu	37	16	56670909	56670909	+	RNA	DEL	T	T	-			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	16	56670909	56670909	T	-	DEL	MT1JP	ENST00000563395	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MT1JP	HGNC	ENSG00000255986				41	0	0	25	3	10.7143
ENSG00000266775	0	genome.wustl.edu	37	17	28885453	28885454	+	RNA	INS	-	-	A			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	17	28885453	28885454	-	A	INS	ENSG00000266775	ENST00000582125	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.225:0.218	-	-	-	no_errors	RP11-218M11.6	Clone_based_vega_gene	ENSG00000266775				13	0	0	4	3	42.8571
TGFBR2	0	genome.wustl.edu	37	3	30691872	30691872	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	3	30691872	30691872	A	-	DEL	TGFBR2	ENST00000359013	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.K153fs	1.000	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,prints_TGFB_receptor	pirsf_Transform_growth_fac-b_typ-2,pfam_Transforming_GF_b_rcpt_2_ecto,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	TGFBR2	HGNC	ENSG00000163513				69	0	0	69	14	16.8675
MLXIPL	0	genome.wustl.edu	37	7	73011627	73011627	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A453-01A-11D-A24D-08	TCGA-BR-A453-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fa5128d6-fb5b-4fcc-be45-ed5e899d3dab	15c0649f-0d32-4f4f-bc84-be3217c0e789	7	73011627	73011627	G	-	DEL	MLXIPL	ENST00000313375	human	ensembl	74_37	-1	known	frame_shift_del	c.1488	p.A497fs	0.002	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLXIPL	HGNC	ENSG00000009950				8	0	0	4	2	33.3333
