Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FNDC7	0	genome.wustl.edu	37	1	109265047	109265047	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	109265047	109265047	A	T	SNP	FNDC7	ENST00000271311	human	ensembl	74_37	+1	known	missense	c.692	p.N231I	0.970	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC7	HGNC	ENSG00000143107				53	0	0	36	10	21.7391
VPS13D	0	genome.wustl.edu	37	1	12337907	12337907	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	12337907	12337907	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.4262	p.R1421H	0.978	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				89	0	0	69	56	44.8
DHRS3	0	genome.wustl.edu	37	1	12677213	12677213	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	12677213	12677213	C	T	SNP	DHRS3	ENST00000376223	human	ensembl	74_37	-1	known	silent	c.141	p.G47	0.969	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS3	HGNC	ENSG00000162496				136	0	0	80	75	48.3871
PRDM2	0	genome.wustl.edu	37	1	14108601	14108601	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	14108601	14108601	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.4311	p.N1437	0.995	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				238	0	0	205	147	41.7614
SPRR1B	0	genome.wustl.edu	37	1	153005026	153005026	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	153005026	153005026	G	T	SNP	SPRR1B	ENST00000307098	human	ensembl	74_37	+1	known	missense	c.205	p.V69L	0.983	pfam_Cornifin	pfam_Cornifin	-	no_errors	SPRR1B	HGNC	ENSG00000169469				249	0	0	205	75	26.7857
IQGAP3	0	genome.wustl.edu	37	1	156524160	156524160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	156524160	156524160	C	T	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.1315	p.V439M	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				71	0	0	64	14	17.9487
SPTA1	0	genome.wustl.edu	37	1	158627279	158627279	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	158627279	158627279	T	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.2793	p.E931D	0.999	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				97	0	0	33	128	79.5031
DCAF6	0	genome.wustl.edu	37	1	167944108	167944108	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	167944108	167944108	T	C	SNP	DCAF6	ENST00000367840	human	ensembl	74_37	+1	known	missense	c.293	p.F98S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom	-	no_errors	DCAF6	HGNC	ENSG00000143164				74	0	0	100	6	5.66038
RGS18	0	genome.wustl.edu	37	1	192153619	192153619	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	192153619	192153619	C	T	SNP	RGS18	ENST00000367460	human	ensembl	74_37	+1	known	nonsense	c.643	p.R215*	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS18	HGNC	ENSG00000150681				57	0	0	68	21	23.5955
KCNT2	0	genome.wustl.edu	37	1	196250003	196250003	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	196250003	196250003	A	T	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	missense	c.2897	p.L966H	0.977	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				42	0	0	45	16	26.2295
CFH	0	genome.wustl.edu	37	1	196684775	196684775	+	Silent	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	196684775	196684775	A	G	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	silent	c.1572	p.T524	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				111	0	0	40	98	71.0145
CFHR5	0	genome.wustl.edu	37	1	196971772	196971772	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	196971772	196971772	G	A	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	nonsense	c.1380	p.W460*	0.676	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				22	0	0	39	5	11.3636
PPP1R12B	0	genome.wustl.edu	37	1	202544208	202544208	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	202544208	202544208	C	T	SNP	PPP1R12B	ENST00000367270	human	ensembl	74_37	+1	known	nonsense	c.619	p.R207*	1.000	NULL	NULL	-	no_errors	PPP1R12B	HGNC	ENSG00000077157				109	0	0	98	47	32.4138
PIK3C2B	0	genome.wustl.edu	37	1	204413547	204413547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	204413547	204413547	G	A	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.2684	p.P895L	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				37	0	0	47	4	7.84314
DIEXF	0	genome.wustl.edu	37	1	210012275	210012275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	210012275	210012275	C	T	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	missense	c.1084	p.R362W	1.000	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597				221	1	0.45045	214	58	21.3235
USH2A	0	genome.wustl.edu	37	1	216462716	216462716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	216462716	216462716	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.1877	p.R626Q	0.997	pfam_EGF_laminin,smart_EGF_laminin	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				71	0	0	88	26	22.807
NUP133	0	genome.wustl.edu	37	1	229619858	229619858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	229619858	229619858	G	A	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.1535	p.T512I	0.004	NULL	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				32	0	0	41	14	25.4545
LUZP1	0	genome.wustl.edu	37	1	23415425	23415425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	23415425	23415425	C	T	SNP	LUZP1	ENST00000302291	human	ensembl	74_37	-1	known	missense	c.3194	p.R1065Q	0.386	NULL	NULL	-	no_errors	LUZP1	HGNC	ENSG00000169641				97	0	0	91	82	47.3988
RYR2	0	genome.wustl.edu	37	1	237619942	237619942	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	237619942	237619942	G	T	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.1513	p.V505F	0.717	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626				105	0	0	84	24	22.2222
RPS6KA1	0	genome.wustl.edu	37	1	26888072	26888072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	26888072	26888072	G	A	SNP	RPS6KA1	ENST00000531382	human	ensembl	74_37	+1	known	missense	c.1535	p.R512Q	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RPS6KA1	HGNC	ENSG00000117676				156	0	0	123	13	9.55882
BMP8B	0	genome.wustl.edu	37	1	40253912	40253912	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	40253912	40253912	G	A	SNP	BMP8B	ENST00000372827	human	ensembl	74_37	-1	known	silent	c.246	p.H82	1.000	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP8B	HGNC	ENSG00000116985				24	0	0	22	8	26.6667
MUTYH	0	genome.wustl.edu	37	1	45799143	45799143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	1	45799143	45799143	C	T	SNP	MUTYH	ENST00000450313	human	ensembl	74_37	-1	known	missense	c.290	p.R97Q	0.986	superfamily_DNA_glycosylase	pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,superfamily_NUDIX_hydrolase_dom-like,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	MUTYH	HGNC	ENSG00000132781				103	0	0	63	35	35.7143
HPSE2	0	genome.wustl.edu	37	10	100481490	100481490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	100481490	100481490	G	A	SNP	HPSE2	ENST00000370552	human	ensembl	74_37	-1	known	missense	c.880	p.R294W	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987				41	0	0	29	13	30.9524
PKD2L1	0	genome.wustl.edu	37	10	102051174	102051174	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	102051174	102051174	C	T	SNP	PKD2L1	ENST00000318222	human	ensembl	74_37	-1	known	missense	c.1891	p.A631T	0.000	NULL	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2,prints_PKD_1	-	no_errors	PKD2L1	HGNC	ENSG00000107593				53	0	0	39	7	15.2174
PDCD11	0	genome.wustl.edu	37	10	105200216	105200216	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	105200216	105200216	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.4318	p.E1440K	0.868	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				42	0	0	25	16	39.0244
ZDHHC6	0	genome.wustl.edu	37	10	114194103	114194103	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	114194103	114194103	A	T	SNP	ZDHHC6	ENST00000369405	human	ensembl	74_37	-1	known	missense	c.855	p.D285E	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfam_SH3_2,superfamily_SH3_domain,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC6	HGNC	ENSG00000023041				57	0	0	46	12	20.6897
ACBD7	0	genome.wustl.edu	37	10	15120493	15120493	+	RNA	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	15120493	15120493	A	C	SNP	ACBD7	ENST00000496890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	ACBD7	HGNC	ENSG00000176244				68	0	0	54	17	23.9437
KIAA1217	0	genome.wustl.edu	37	10	24820922	24820922	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	24820922	24820922	G	T	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.3246	p.K1082N	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549				46	0	0	51	21	29.1667
TMEM72	0	genome.wustl.edu	37	10	45430339	45430339	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	10	45430339	45430339	G	T	SNP	TMEM72	ENST00000544540	human	ensembl	74_37	+1	known	missense	c.231	p.K77N	0.022	NULL	NULL	-	no_errors	TMEM72	HGNC	ENSG00000187783				326	0	0	288	19	6.18893
ATM	0	genome.wustl.edu	37	11	108199886	108199886	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	108199886	108199886	T	C	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.7228	p.F2410L	1.000	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				32	0	0	16	29	64.4444
C11orf65	0	genome.wustl.edu	37	11	108256664	108256664	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	108256664	108256664	G	T	SNP	C11orf65	ENST00000393084	human	ensembl	74_37	-1	known	missense	c.770	p.S257Y	1.000	NULL	NULL	-	no_errors	C11orf65	HGNC	ENSG00000166323				131	0	0	116	8	6.45161
POU2F3	0	genome.wustl.edu	37	11	120180168	120180168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	120180168	120180168	T	C	SNP	POU2F3	ENST00000260264	human	ensembl	74_37	+1	known	missense	c.947	p.I316T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F3	HGNC	ENSG00000137709				68	0	0	18	42	70
PARVA	0	genome.wustl.edu	37	11	12525930	12525930	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	12525930	12525930	C	G	SNP	PARVA	ENST00000334956	human	ensembl	74_37	+1	known	missense	c.731	p.P244R	1.000	superfamily_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVA	HGNC	ENSG00000197702				37	0	0	54	6	10
PAX6	0	genome.wustl.edu	37	11	31824271	31824271	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	31824271	31824271	T	A	SNP	PAX6	ENST00000379107	human	ensembl	74_37	-1	known	missense	c.122	p.D41V	1.000	pfam_Paired_dom,superfamily_Homeodomain-like,smart_Paired_dom,prints_Paired_dom,pfscan_Paired_dom	pfam_Paired_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX6	HGNC	ENSG00000007372				32	0	0	53	5	8.62069
MMP26	0	genome.wustl.edu	37	11	5010915	5010915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	5010915	5010915	C	T	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	missense	c.137	p.S46L	0.000	superfamily_Peptidoglycan-bd-like	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP26	HGNC	ENSG00000167346				45	0	0	43	15	25.8621
OR4D6	0	genome.wustl.edu	37	11	59224503	59224503	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	59224503	59224503	G	C	SNP	OR4D6	ENST00000300127	human	ensembl	74_37	+1	known	missense	c.70	p.E24Q	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884				124	0	0	127	16	11.1888
NRXN2	0	genome.wustl.edu	37	11	64416246	64416246	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	64416246	64416246	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	silent	c.3243	p.D1081	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				136	0	0	188	29	13.3641
SLC25A45	0	genome.wustl.edu	37	11	65144451	65144451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	65144451	65144451	C	T	SNP	SLC25A45	ENST00000398802	human	ensembl	74_37	-1	known	missense	c.436	p.G146R	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A45	HGNC	ENSG00000162241				90	0	0	113	13	10.3175
RBM14	0	genome.wustl.edu	37	11	66392900	66392900	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	66392900	66392900	C	G	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.1553	p.T518S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				110	0	0	240	13	5.13834
CABP4	0	genome.wustl.edu	37	11	67223873	67223873	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	67223873	67223873	G	C	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	missense	c.501	p.E167D	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544				88	0	0	54	4	6.89655
PHOX2A	0	genome.wustl.edu	37	11	71954983	71954983	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	71954983	71954983	G	A	SNP	PHOX2A	ENST00000298231	human	ensembl	74_37	-1	known	silent	c.66	p.G22	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PHOX2A	HGNC	ENSG00000165462				16	0	0	20	5	20
UBC	0	genome.wustl.edu	37	12	125396700	125396700	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	125396700	125396700	G	C	SNP	UBC	ENST00000339647	human	ensembl	74_37	-1	known	missense	c.1618	p.L540V	0.981	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				28	0	0	11	6	35.2941
UBC	0	genome.wustl.edu	37	12	125396928	125396928	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	125396928	125396928	G	C	SNP	UBC	ENST00000339647	human	ensembl	74_37	-1	known	missense	c.1390	p.L464V	0.997	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				24	0	0	23	7	23.3333
EP400	0	genome.wustl.edu	37	12	132479416	132479416	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	132479416	132479416	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.2850	p.D950	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				108	0	0	86	5	5.49451
KRAS	0	genome.wustl.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	25398285	25398285	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.34	p.G12S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				22	0	0	15	20	57.1429
KRT7	0	genome.wustl.edu	37	12	52627391	52627391	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	52627391	52627391	C	G	SNP	KRT7	ENST00000331817	human	ensembl	74_37	+1	known	missense	c.311	p.S104C	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II,prints_Keratin_II	-	no_errors	KRT7	HGNC	ENSG00000135480				157	0	0	128	27	17.4194
KRT8	0	genome.wustl.edu	37	12	53298786	53298786	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	53298786	53298786	C	A	SNP	KRT8	ENST00000552150	human	ensembl	74_37	-1	putative	missense	c.64	p.A22S	0.031	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				39	0	0	26	2	7.14286
ARHGAP9	0	genome.wustl.edu	37	12	57870956	57870956	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	57870956	57870956	C	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	missense	c.853	p.E285K	0.025	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329				84	0	0	32	40	55.5556
XPOT	0	genome.wustl.edu	37	12	64816815	64816815	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	64816815	64816815	A	G	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.1111	p.N371D	1.000	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575				33	0	0	45	14	23.7288
CHD4	0	genome.wustl.edu	37	12	6687229	6687229	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	6687229	6687229	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.5278	p.R1760W	0.999	pfam_CHD_C2	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				123	0	0	70	36	33.9623
ZFC3H1	0	genome.wustl.edu	37	12	72038089	72038089	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	72038089	72038089	G	T	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.1289	p.A430E	0.981	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				15	0	0	21	2	8.69565
TPH2	0	genome.wustl.edu	37	12	72372834	72372834	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	12	72372834	72372834	G	A	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.908	p.R303Q	0.998	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				208	0	0	185	62	25.1012
TPP2	0	genome.wustl.edu	37	13	103295691	103295691	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	103295691	103295691	G	T	SNP	TPP2	ENST00000376065	human	ensembl	74_37	+1	known	nonsense	c.2140	p.E714*	1.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Peptidase_S8A_TPPII,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	TPP2	HGNC	ENSG00000134900				22	0	0	20	2	9.09091
RNF17	0	genome.wustl.edu	37	13	25440297	25440297	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	25440297	25440297	C	T	SNP	RNF17	ENST00000255324	human	ensembl	74_37	+1	known	missense	c.4117	p.H1373Y	0.081	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor,pfscan_Znf_RING	-	no_errors	RNF17	HGNC	ENSG00000132972				58	0	0	61	21	25.6098
ATP8A2	0	genome.wustl.edu	37	13	26343356	26343356	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	26343356	26343356	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.2557	p.A853T	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				103	0	0	54	56	50.9091
WASF3	0	genome.wustl.edu	37	13	27216523	27216523	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	27216523	27216523	G	T	SNP	WASF3	ENST00000335327	human	ensembl	74_37	+1	known	missense	c.116	p.R39L	1.000	NULL	pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	WASF3	HGNC	ENSG00000132970				133	0	0	160	18	10.1124
LCP1	0	genome.wustl.edu	37	13	46718575	46718575	+	Splice_Site	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	46718575	46718575	A	T	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	splice_site	c.1253+2	e10+2	1.000	-	-	-	no_errors	LCP1	HGNC	ENSG00000136167				38	0	0	16	51	76.1194
PCDH8	0	genome.wustl.edu	37	13	53421450	53421450	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	53421450	53421450	G	A	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	0.078	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				18	0	0	12	4	25
CDH24	0	genome.wustl.edu	37	14	23518308	23518308	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	23518308	23518308	C	T	SNP	CDH24	ENST00000267383	human	ensembl	74_37	-1	known	missense	c.1888	p.A630T	1.000	pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH24	HGNC	ENSG00000139880				36	0	0	29	4	12.1212
NPAS3	0	genome.wustl.edu	37	14	34270262	34270262	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	34270262	34270262	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.2749	p.V917I	0.981	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				17	0	0	12	7	36.8421
EML5	0	genome.wustl.edu	37	14	89130844	89130844	+	Silent	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	89130844	89130844	A	G	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.3402	p.D1134	0.047	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521				27	0	0	38	4	9.52381
SMEK1	0	genome.wustl.edu	37	14	91937312	91937312	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	91937312	91937312	G	A	SNP	SMEK1	ENST00000554943	human	ensembl	74_37	-1	known	missense	c.1529	p.A510V	1.000	superfamily_ARM-type_fold	pfam_DUF625,superfamily_ARM-type_fold	-	no_errors	SMEK1	HGNC	ENSG00000100796				56	0	0	44	37	45.679
CATSPERB	0	genome.wustl.edu	37	14	92170986	92170986	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	92170986	92170986	A	G	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.526	p.Y176H	0.213	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				87	0	0	113	6	5.04202
UNC79	0	genome.wustl.edu	37	14	94063796	94063796	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	14	94063796	94063796	C	T	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	silent	c.3282	p.C1094	1.000	superfamily_ARM-type_fold	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958				95	0	0	84	28	25
RYR3	0	genome.wustl.edu	37	15	33936587	33936587	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	15	33936587	33936587	A	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.3632	p.K1211R	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				29	0	0	14	12	46.1538
SNX1	0	genome.wustl.edu	37	15	64422454	64422454	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	15	64422454	64422454	G	C	SNP	SNX1	ENST00000559844	human	ensembl	74_37	+1	known	missense	c.949	p.E317Q	1.000	pfam_Vps5_C	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX1	HGNC	ENSG00000028528				45	0	0	44	11	20
RASGRF1	0	genome.wustl.edu	37	15	79339211	79339211	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	15	79339211	79339211	T	G	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.755	p.E252A	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335				126	0	0	130	30	18.75
CPEB1	0	genome.wustl.edu	37	15	83218272	83218272	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	15	83218272	83218272	T	G	SNP	CPEB1	ENST00000562019	human	ensembl	74_37	-1	known	missense	c.1352	p.N451T	0.998	pfscan_RRM_dom	pfscan_RRM_dom	-	no_errors	CPEB1	HGNC	ENSG00000214575				93	0	0	144	16	10
MAN2A2	0	genome.wustl.edu	37	15	91459446	91459446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	15	91459446	91459446	G	A	SNP	MAN2A2	ENST00000360468	human	ensembl	74_37	+1	known	missense	c.2954	p.R985H	0.946	pfam_Glyco_hydro_38_C,superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2A2	HGNC	ENSG00000196547				155	0	0	276	51	15.5963
ROGDI	0	genome.wustl.edu	37	16	4849721	4849721	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	4849721	4849721	C	A	SNP	ROGDI	ENST00000322048	human	ensembl	74_37	-1	known	missense	c.398	p.S133I	0.998	pfam_RAVE2/Rogdi	pfam_RAVE2/Rogdi	-	no_errors	ROGDI	HGNC	ENSG00000067836				44	0	0	29	2	6.45161
ZNF423	0	genome.wustl.edu	37	16	49671081	49671081	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	49671081	49671081	T	G	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	missense	c.1982	p.K661T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				94	0	0	56	16	22.2222
SNX20	0	genome.wustl.edu	37	16	50709712	50709712	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	50709712	50709712	C	G	SNP	SNX20	ENST00000330943	human	ensembl	74_37	-1	known	missense	c.251	p.R84P	1.000	superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208				107	0	0	81	13	13.8298
MMP2	0	genome.wustl.edu	37	16	55519277	55519277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	55519277	55519277	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	missense	c.596	p.T199I	0.990	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				139	0	0	153	27	15
CDH3	0	genome.wustl.edu	37	16	68718510	68718510	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	68718510	68718510	C	T	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	nonsense	c.1207	p.Q403*	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				383	0	0	324	96	22.8571
RBFOX1	0	genome.wustl.edu	37	16	7568167	7568167	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	7568167	7568167	G	A	SNP	RBFOX1	ENST00000547372	human	ensembl	74_37	+1	known	missense	c.175	p.A59T	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328				328	0	0	267	16	5.65371
BCMO1	0	genome.wustl.edu	37	16	81298282	81298282	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	81298282	81298282	C	T	SNP	BCMO1	ENST00000258168	human	ensembl	74_37	+1	known	missense	c.509	p.T170M	1.000	pfam_Carotenoid_Oase	pfam_Carotenoid_Oase	-	no_errors	BCMO1	HGNC	ENSG00000135697				91	0	0	82	23	21.9048
MSLN	0	genome.wustl.edu	37	16	817420	817420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	16	817420	817420	G	A	SNP	MSLN	ENST00000382862	human	ensembl	74_37	+1	known	missense	c.1570	p.V524M	0.015	pfam_Mesothelin	pfam_Mesothelin	-	no_errors	MSLN	HGNC	ENSG00000102854				219	0	0	123	21	14.5833
EVI2B	0	genome.wustl.edu	37	17	29631447	29631447	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	29631447	29631447	G	T	SNP	EVI2B	ENST00000544462	human	ensembl	74_37	-1	known	nonsense	c.1226	p.S409*	0.146	NULL	NULL	-	no_errors	EVI2B	HGNC	ENSG00000185862				72	0	0	108	28	20.5882
C17orf98	0	genome.wustl.edu	37	17	36991500	36991500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	36991500	36991500	G	A	SNP	C17orf98	ENST00000398575	human	ensembl	74_37	-1	known	missense	c.407	p.P136L	1.000	NULL	NULL	-	no_errors	C17orf98	HGNC	ENSG00000214556				105	0	0	108	34	23.9437
RUNDC1	0	genome.wustl.edu	37	17	41143004	41143004	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	41143004	41143004	G	A	SNP	RUNDC1	ENST00000361677	human	ensembl	74_37	+1	known	silent	c.1113	p.R371	0.703	NULL	pfam_Run,smart_Run,pfscan_Run	-	no_errors	RUNDC1	HGNC	ENSG00000198863				53	0	0	45	33	42.3077
FZD2	0	genome.wustl.edu	37	17	42636499	42636499	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	42636499	42636499	C	T	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	silent	c.1443	p.F481	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				74	0	0	103	31	23.1343
NFE2L1	0	genome.wustl.edu	37	17	46128574	46128574	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	46128574	46128574	C	T	SNP	NFE2L1	ENST00000362042	human	ensembl	74_37	+1	known	silent	c.94	p.L32	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L1	HGNC	ENSG00000082641				119	0	0	154	20	11.4943
BZRAP1	0	genome.wustl.edu	37	17	56386420	56386420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	56386420	56386420	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.4213	p.R1405W	0.972	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				201	0	0	191	54	22.0408
BZRAP1	0	genome.wustl.edu	37	17	56396519	56396519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	56396519	56396519	A	G	SNP	BZRAP1	ENST00000355701	human	ensembl	74_37	-1	known	missense	c.1631	p.L544P	0.014	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379				8	0	0	9	3	25
RGS9	0	genome.wustl.edu	37	17	63200369	63200369	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	63200369	63200369	C	T	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	missense	c.1153	p.R385C	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				77	0	0	69	47	40.5172
AXIN2	0	genome.wustl.edu	37	17	63532604	63532604	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	63532604	63532604	G	A	SNP	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	missense	c.1975	p.R659W	0.995	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				94	0	0	105	15	12.5
GPRC5C	0	genome.wustl.edu	37	17	72428204	72428204	+	Silent	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	72428204	72428204	A	G	SNP	GPRC5C	ENST00000392627	human	ensembl	74_37	+1	known	silent	c.27	p.Q9	0.768	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412				68	0	0	55	24	30.3797
TP53	0	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	17	7578403	7578403	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.527	p.C176F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				88	0	0	24	49	67.1233
SLC14A2	0	genome.wustl.edu	37	18	43262407	43262407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	18	43262407	43262407	C	T	SNP	SLC14A2	ENST00000255226	human	ensembl	74_37	+1	known	missense	c.2686	p.R896C	1.000	NULL	pfam_Urea_transporter	-	no_errors	SLC14A2	HGNC	ENSG00000132874				194	0	0	157	11	6.54762
DCC	0	genome.wustl.edu	37	18	50994343	50994343	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	18	50994343	50994343	G	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.3699	p.K1233N	0.998	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				85	0	0	74	22	22.9167
TRMT1	0	genome.wustl.edu	37	19	13226181	13226181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	13226181	13226181	C	T	SNP	TRMT1	ENST00000357720	human	ensembl	74_37	-1	known	missense	c.553	p.A185T	1.000	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,tigrfam_TRM1	pfam_TRM1,pfam_Znf_CCCH,pfam_tRNA_Trfase_Trm5/Tyw2,smart_Znf_CCCH,tigrfam_TRM1	-	no_errors	TRMT1	HGNC	ENSG00000104907				87	0	0	75	12	13.7931
ZNF430	0	genome.wustl.edu	37	19	21240536	21240536	+	Silent	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	21240536	21240536	A	T	SNP	ZNF430	ENST00000261560	human	ensembl	74_37	+1	known	silent	c.1422	p.A474	0.295	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF430	HGNC	ENSG00000118620				58	0	0	49	6	10.9091
ANKRD27	0	genome.wustl.edu	37	19	33106644	33106644	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	33106644	33106644	C	A	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	missense	c.2095	p.A699S	0.002	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186				107	0	0	56	50	47.1698
CEBPG	0	genome.wustl.edu	37	19	33870289	33870289	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	33870289	33870289	C	T	SNP	CEBPG	ENST00000284000	human	ensembl	74_37	+1	known	silent	c.144	p.P48	0.017	NULL	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	CEBPG	HGNC	ENSG00000153879				79	0	0	55	17	23.6111
ZNF566	0	genome.wustl.edu	37	19	36940522	36940522	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	36940522	36940522	C	A	SNP	ZNF566	ENST00000392170	human	ensembl	74_37	-1	known	missense	c.617	p.G206V	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF566	HGNC	ENSG00000186017				70	0	0	35	35	50
B9D2	0	genome.wustl.edu	37	19	41863923	41863923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	41863923	41863923	C	T	SNP	B9D2	ENST00000594416	human	ensembl	74_37	-1	known	missense	c.188	p.R63Q	0.615	NULL	pfam_B9_dom	-	no_errors	B9D2	HGNC	ENSG00000123810				72	0	0	42	41	49.3976
C5AR2	0	genome.wustl.edu	37	19	47844598	47844598	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	47844598	47844598	C	T	SNP	C5AR2	ENST00000257267	human	ensembl	74_37	+1	known	missense	c.542	p.P181L	0.021	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C5AR2	HGNC	ENSG00000134830				112	0	0	75	34	31.1927
KPTN	0	genome.wustl.edu	37	19	47981013	47981013	+	Silent	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	47981013	47981013	A	G	SNP	KPTN	ENST00000338134	human	ensembl	74_37	-1	known	silent	c.813	p.D271	0.114	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162				61	0	0	52	9	14.7541
SCAF1	0	genome.wustl.edu	37	19	50161535	50161535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	50161535	50161535	G	A	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.3818	p.R1273H	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				50	0	0	25	36	59.0164
ZNF320	0	genome.wustl.edu	37	19	53367302	53367302	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	53367302	53367302	C	A	SNP	ZNF320	ENST00000597909	human	ensembl	74_37	-1	putative	nonsense	c.334	p.E112*	0.068	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF320	HGNC	ENSG00000182986				68	0	0	43	42	49.4118
NLRP2	0	genome.wustl.edu	37	19	55494466	55494466	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	55494466	55494466	G	A	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	missense	c.1400	p.R467Q	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556				117	0	0	79	65	45.1389
NLRP13	0	genome.wustl.edu	37	19	56419255	56419255	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	56419255	56419255	G	C	SNP	NLRP13	ENST00000342929	human	ensembl	74_37	-1	known	missense	c.2350	p.L784V	0.675	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP13	HGNC	ENSG00000173572				174	0	0	98	109	52.657
MUC16	0	genome.wustl.edu	37	19	9010994	9010994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	9010994	9010994	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38924	p.R12975Q	0.001	smart_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				185	0	0	131	36	21.5569
MUC16	0	genome.wustl.edu	37	19	9073053	9073053	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	9073053	9073053	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.14393	p.T4798I	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				46	0	0	27	11	28.9474
MUC16	0	genome.wustl.edu	37	19	9076960	9076960	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	19	9076960	9076960	C	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.10486	p.E3496Q	0.041	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				99	0	0	60	27	31.0345
MAP4K4	0	genome.wustl.edu	37	2	102460759	102460759	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	102460759	102460759	C	T	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	nonsense	c.1219	p.R407*	0.998	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054				14	0	0	15	4	21.0526
RGPD4	0	genome.wustl.edu	37	2	108477264	108477264	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	108477264	108477264	G	A	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.1801	p.G601R	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				115	1	0.862069	142	18	11.25
ZC3H6	0	genome.wustl.edu	37	2	113088794	113088794	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	113088794	113088794	G	T	SNP	ZC3H6	ENST00000343936	human	ensembl	74_37	+1	known	missense	c.2299	p.D767Y	0.883	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H6	HGNC	ENSG00000188177				54	0	0	43	19	30.6452
CCDC74B	0	genome.wustl.edu	37	2	130897230	130897230	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	130897230	130897230	G	A	SNP	CCDC74B	ENST00000392984	human	ensembl	74_37	-1	known	silent	c.1347	p.A449	0.616	NULL	NULL	-	no_errors	CCDC74B	HGNC	ENSG00000152076				47	0	0	21	35	62.5
NCKAP5	0	genome.wustl.edu	37	2	133540023	133540023	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	133540023	133540023	G	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.4361	p.A1454D	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				51	0	0	56	18	24.3243
LCT	0	genome.wustl.edu	37	2	136566344	136566344	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	136566344	136566344	C	A	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	missense	c.3573	p.E1191D	0.996	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				159	0	0	108	98	47.5728
NBAS	0	genome.wustl.edu	37	2	15614226	15614226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	15614226	15614226	G	A	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.1564	p.R522C	1.000	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				97	0	0	74	22	22.9167
TANC1	0	genome.wustl.edu	37	2	160086925	160086925	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	160086925	160086925	C	T	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.4988	p.S1663L	0.742	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				110	0	0	63	78	55.3191
FAP	0	genome.wustl.edu	37	2	163029701	163029701	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	163029701	163029701	A	T	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	missense	c.2065	p.F689I	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098				64	0	0	50	15	23.0769
TTN	0	genome.wustl.edu	37	2	179432952	179432952	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	179432952	179432952	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.70203	p.N23401K	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				130	1	0.763359	146	36	19.7802
TTN	0	genome.wustl.edu	37	2	179452058	179452058	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	179452058	179452058	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56176	p.G18726S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				31	0	0	22	28	56
TTN	0	genome.wustl.edu	37	2	179584366	179584366	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	179584366	179584366	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.20121	p.A6707	0.990	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				114	0	0	80	110	57.8947
DNAH7	0	genome.wustl.edu	37	2	196729451	196729451	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	196729451	196729451	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.6928	p.P2310T	0.056	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				121	0	0	133	59	30.7292
SLC4A3	0	genome.wustl.edu	37	2	220504270	220504270	+	Silent	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	220504270	220504270	C	A	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	silent	c.3171	p.L1057	0.803	pfam_HCO3_transpt_C,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				120	0	0	70	19	21.3483
ACKR3	0	genome.wustl.edu	37	2	237489880	237489880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	237489880	237489880	G	A	SNP	ACKR3	ENST00000272928	human	ensembl	74_37	+1	known	missense	c.772	p.V258M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR7,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Formyl_pep_rcpt	-	no_errors	ACKR3	HGNC	ENSG00000144476				155	0	0	69	75	52.0833
RBM44	0	genome.wustl.edu	37	2	238726967	238726967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	238726967	238726967	G	A	SNP	RBM44	ENST00000316997	human	ensembl	74_37	+1	known	missense	c.1408	p.D470N	0.994	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM44	HGNC	ENSG00000177483				77	0	0	69	18	20.6897
PER2	0	genome.wustl.edu	37	2	239161666	239161666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	239161666	239161666	G	A	SNP	PER2	ENST00000254657	human	ensembl	74_37	-1	known	missense	c.2998	p.P1000S	0.914	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER2	HGNC	ENSG00000132326				125	0	0	101	27	21.0938
ALK	0	genome.wustl.edu	37	2	29462633	29462633	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	29462633	29462633	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	silent	c.2268	p.G756	0.987	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				86	0	0	36	15	29.4118
PRKCE	0	genome.wustl.edu	37	2	46411945	46411945	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	46411945	46411945	C	T	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	silent	c.2139	p.D713	0.935	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				78	0	0	62	37	37.3737
SOCS5	0	genome.wustl.edu	37	2	46987047	46987047	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	46987047	46987047	A	G	SNP	SOCS5	ENST00000306503	human	ensembl	74_37	+1	known	missense	c.1378	p.K460E	1.000	smart_SH2,pfscan_SH2	pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2	-	no_errors	SOCS5	HGNC	ENSG00000171150				101	0	0	69	38	35.514
ENSG00000273064	0	genome.wustl.edu	37	2	68480207	68480207	+	RNA	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	68480207	68480207	C	T	SNP	ENSG00000273064	ENST00000608069	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-474G23.3	Clone_based_vega_gene	ENSG00000273064				52	0	0	46	24	34.2857
CTNNA2	0	genome.wustl.edu	37	2	80773040	80773040	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	80773040	80773040	T	A	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.1494	p.N498K	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				44	0	0	46	8	14.8148
ADRA2B	0	genome.wustl.edu	37	2	96780826	96780826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	96780826	96780826	G	A	SNP	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				43	0	0	26	4	13.3333
CST2	0	genome.wustl.edu	37	20	23805914	23805914	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	23805914	23805914	G	T	SNP	CST2	ENST00000304725	human	ensembl	74_37	-1	known	missense	c.275	p.T92N	0.925	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST2	HGNC	ENSG00000170369				217	0	0	224	95	29.7806
SLC4A11	0	genome.wustl.edu	37	20	3218214	3218214	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	3218214	3218214	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	nonsense	c.193	p.Q65*	0.694	NULL	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				143	0	0	144	42	22.5806
SMOX	0	genome.wustl.edu	37	20	4163097	4163097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	4163097	4163097	C	T	SNP	SMOX	ENST00000305958	human	ensembl	74_37	+1	known	missense	c.971	p.P324L	0.979	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom	-	no_errors	SMOX	HGNC	ENSG00000088826				131	0	0	68	63	48.0916
TSHZ2	0	genome.wustl.edu	37	20	51871962	51871962	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	51871962	51871962	G	T	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.1965	p.E655D	0.992	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				95	0	0	214	12	5.30973
CDH26	0	genome.wustl.edu	37	20	58570907	58570907	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	58570907	58570907	A	C	SNP	CDH26	ENST00000244047	human	ensembl	74_37	+1	known	missense	c.1686	p.L562F	0.000	superfamily_Cadherin-like	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215				44	0	0	96	14	12.7273
FAM110A	0	genome.wustl.edu	37	20	825521	825521	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	20	825521	825521	C	T	SNP	FAM110A	ENST00000246100	human	ensembl	74_37	+1	known	missense	c.74	p.P25L	1.000	NULL	NULL	-	no_errors	FAM110A	HGNC	ENSG00000125898				16	0	0	3	6	66.6667
BCR	0	genome.wustl.edu	37	22	23656786	23656786	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	22	23656786	23656786	C	G	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	missense	c.3611	p.A1204G	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				64	0	0	47	7	12.963
BCR	0	genome.wustl.edu	37	22	23656790	23656790	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	22	23656790	23656790	G	A	SNP	BCR	ENST00000305877	human	ensembl	74_37	+1	known	silent	c.3615	p.T1205	0.194	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Bcr-Abl_oncoprot_oligo,pfam_DH-domain,pfam_C2_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_Bcr-Abl_oncoprot_oligo,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	BCR	HGNC	ENSG00000186716				63	0	0	48	7	12.7273
TBC1D10A	0	genome.wustl.edu	37	22	30689913	30689913	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	22	30689913	30689913	C	A	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	nonsense	c.892	p.E298*	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992				89	0	0	76	18	19.1489
PANX2	0	genome.wustl.edu	37	22	50615660	50615660	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	22	50615660	50615660	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	silent	c.519	p.A173	0.004	pfam_Innexin,pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				42	0	0	32	14	30.4348
NXPE3	0	genome.wustl.edu	37	3	101540691	101540691	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	101540691	101540691	G	A	SNP	NXPE3	ENST00000273347	human	ensembl	74_37	+1	known	missense	c.1573	p.E525K	1.000	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE3	HGNC	ENSG00000144815				111	0	0	40	80	66.6667
BBX	0	genome.wustl.edu	37	3	107435518	107435518	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	107435518	107435518	C	T	SNP	BBX	ENST00000325805	human	ensembl	74_37	+1	known	missense	c.227	p.P76L	1.000	superfamily_HMG_box_dom	pfam_TF_HMG_box_BBX_DUF2028,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	BBX	HGNC	ENSG00000114439				101	0	0	63	39	38.2353
GP9	0	genome.wustl.edu	37	3	128780765	128780765	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	128780765	128780765	C	G	SNP	GP9	ENST00000307395	human	ensembl	74_37	+1	known	missense	c.183	p.N61K	1.000	NULL	pfam_LRR-contain_N,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C	-	no_errors	GP9	HGNC	ENSG00000169704				55	0	0	71	7	8.97436
PRR23B	0	genome.wustl.edu	37	3	138739150	138739150	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	138739150	138739150	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	74_37	-1	known	silent	c.354	p.S118	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814				101	0	0	19	55	74.3243
MME	0	genome.wustl.edu	37	3	154886304	154886304	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	154886304	154886304	G	C	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.1804	p.D602H	0.999	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549				41	0	0	54	13	19.403
FNDC3B	0	genome.wustl.edu	37	3	171965381	171965381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	171965381	171965381	G	A	SNP	FNDC3B	ENST00000336824	human	ensembl	74_37	+1	known	missense	c.323	p.C108Y	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3B	HGNC	ENSG00000075420				145	0	0	150	125	45.4545
SATB1	0	genome.wustl.edu	37	3	18435984	18435984	+	Silent	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	18435984	18435984	T	C	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	silent	c.1176	p.V392	0.934	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				145	0	0	75	54	41.8605
EIF4A2	0	genome.wustl.edu	37	3	186503790	186503790	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	186503790	186503790	T	A	SNP	EIF4A2	ENST00000440191	human	ensembl	74_37	+1	known	missense	c.470	p.V157D	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976				50	0	0	71	37	34.2593
CLEC3B	0	genome.wustl.edu	37	3	45077363	45077363	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	45077363	45077363	G	A	SNP	CLEC3B	ENST00000296130	human	ensembl	74_37	+1	known	missense	c.556	p.D186N	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC3B	HGNC	ENSG00000163815				81	0	0	52	33	38.8235
LAMB2	0	genome.wustl.edu	37	3	49166009	49166009	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	49166009	49166009	G	T	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	missense	c.1900	p.Q634K	0.448	pfscan_Laminin_IV	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				99	0	0	44	32	42.1053
UBA7	0	genome.wustl.edu	37	3	49847040	49847040	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	49847040	49847040	C	G	SNP	UBA7	ENST00000333486	human	ensembl	74_37	-1	known	missense	c.2023	p.G675R	0.992	superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ub-activating_enz_e1_C,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like,tigrfam_UBQ-activ_enz_E1	-	no_errors	UBA7	HGNC	ENSG00000182179				293	0	0	158	54	25.4717
GRM2	0	genome.wustl.edu	37	3	51749696	51749696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	51749696	51749696	G	A	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.1907	p.R636H	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				104	0	0	42	32	43.2432
FRMD4B	0	genome.wustl.edu	37	3	69231783	69231783	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	69231783	69231783	G	C	SNP	FRMD4B	ENST00000398540	human	ensembl	74_37	-1	known	missense	c.2005	p.L669V	0.984	NULL	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4B	HGNC	ENSG00000114541				234	0	0	166	68	29.0598
ARL13B	0	genome.wustl.edu	37	3	93699275	93699275	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	93699275	93699275	G	C	SNP	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	missense	c.8	p.S3T	1.000	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				94	0	0	55	4	6.77966
PRDM5	0	genome.wustl.edu	37	4	121739673	121739673	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	4	121739673	121739673	C	G	SNP	PRDM5	ENST00000264808	human	ensembl	74_37	-1	known	missense	c.485	p.G162A	0.856	pirsf_Znf_PRDM5	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_SET_dom,smart_Znf_C2H2-like,pirsf_Znf_PRDM5,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM5	HGNC	ENSG00000138738				53	0	0	35	17	32.6923
FAT4	0	genome.wustl.edu	37	4	126242374	126242374	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	4	126242374	126242374	C	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.4808	p.A1603E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				149	0	0	90	33	26.8293
TLL1	0	genome.wustl.edu	37	4	166915615	166915615	+	Silent	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	4	166915615	166915615	C	A	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	silent	c.444	p.A148	0.976	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				53	0	0	27	8	22.8571
CTNND2	0	genome.wustl.edu	37	5	11384956	11384956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	11384956	11384956	G	A	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.998	p.S333L	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				46	0	0	25	11	30.5556
SRFBP1	0	genome.wustl.edu	37	5	121311043	121311043	+	Silent	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	121311043	121311043	A	G	SNP	SRFBP1	ENST00000339397	human	ensembl	74_37	+1	known	silent	c.159	p.R53	0.998	NULL	pfam_Bud-site_select_BUD22	-	no_errors	SRFBP1	HGNC	ENSG00000151304				99	0	0	80	32	28.5714
PCDHA9	0	genome.wustl.edu	37	5	140229774	140229774	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	140229774	140229774	T	C	SNP	PCDHA9	ENST00000532602	human	ensembl	74_37	+1	known	missense	c.1694	p.L565P	0.980	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA9	HGNC	ENSG00000204961				227	0	0	113	64	36.1582
PCDHB13	0	genome.wustl.edu	37	5	140595824	140595824	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	140595824	140595824	C	A	SNP	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	missense	c.2129	p.A710E	0.002	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372				316	0	0	307	22	6.68693
SCGB3A2	0	genome.wustl.edu	37	5	147261702	147261702	+	RNA	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	147261702	147261702	A	C	SNP	SCGB3A2	ENST00000507160	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	SCGB3A2	HGNC	ENSG00000164265				18	0	0	10	7	41.1765
PRDM9	0	genome.wustl.edu	37	5	23526712	23526712	+	Silent	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	23526712	23526712	T	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.1515	p.N505	0.002	NULL	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				87	0	0	14	38	73.0769
PRDM9	0	genome.wustl.edu	37	5	23526955	23526955	+	Silent	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	23526955	23526955	G	C	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	silent	c.1758	p.G586	0.990	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				155	0	0	44	37	45.679
SEMA5A	0	genome.wustl.edu	37	5	9227000	9227000	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	9227000	9227000	G	C	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.413	p.P138R	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902				73	0	0	51	24	32
FAM184A	0	genome.wustl.edu	37	6	119338083	119338083	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	119338083	119338083	C	A	SNP	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	missense	c.1359	p.Q453H	0.996	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				43	0	0	39	11	22
MAN1A1	0	genome.wustl.edu	37	6	119670147	119670147	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	119670147	119670147	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	silent	c.84	p.R28	1.000	NULL	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885				31	0	0	34	7	17.0732
HEY2	0	genome.wustl.edu	37	6	126080780	126080780	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	126080780	126080780	C	T	SNP	HEY2	ENST00000368364	human	ensembl	74_37	+1	known	silent	c.846	p.F282	0.030	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom,prints_Antifreeze_1	-	no_errors	HEY2	HGNC	ENSG00000135547				418	0	0	212	277	56.6462
MCUR1	0	genome.wustl.edu	37	6	13792193	13792193	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	13792193	13792193	G	T	SNP	MCUR1	ENST00000379170	human	ensembl	74_37	-1	known	missense	c.941	p.T314K	1.000	pfam_DUF1640	pfam_DUF1640	-	no_errors	MCUR1	HGNC	ENSG00000050393				55	0	0	48	13	21.3115
SYNE1	0	genome.wustl.edu	37	6	152690232	152690232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	152690232	152690232	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.9682	p.P3228S	1.000	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				35	0	0	61	10	14.0845
SYNE1	0	genome.wustl.edu	37	6	152718079	152718079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	152718079	152718079	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.7387	p.L2463I	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				82	0	0	116	8	6.45161
ATXN1	0	genome.wustl.edu	37	6	16328351	16328351	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	16328351	16328351	C	T	SNP	ATXN1	ENST00000244769	human	ensembl	74_37	-1	known	missense	c.191	p.G64E	0.883	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788				230	0	0	132	62	31.9588
C6orf118	0	genome.wustl.edu	37	6	165715680	165715680	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	165715680	165715680	A	C	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.131	p.L44R	0.046	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				102	0	0	113	71	38.587
SNORD117	0	genome.wustl.edu	37	6	31504182	31504182	+	RNA	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	31504182	31504182	G	A	SNP	SNORD117	ENST00000364915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	SNORD117	HGNC	ENSG00000201785				82	0	0	89	51	36.4286
IRF4	0	genome.wustl.edu	37	6	394831	394831	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	394831	394831	T	C	SNP	IRF4	ENST00000380956	human	ensembl	74_37	+1	known	missense	c.227	p.L76P	0.984	pfam_Interferon_reg_fact_DNA-bd_dom,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF4	HGNC	ENSG00000137265				218	0	0	164	15	8.37989
TFEB	0	genome.wustl.edu	37	6	41652678	41652678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	41652678	41652678	C	T	SNP	TFEB	ENST00000230323	human	ensembl	74_37	-1	known	missense	c.1090	p.A364T	0.020	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFEB	HGNC	ENSG00000112561				23	0	0	40	15	27.2727
KLC4	0	genome.wustl.edu	37	6	43029068	43029068	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	43029068	43029068	G	A	SNP	KLC4	ENST00000259708	human	ensembl	74_37	+1	known	missense	c.49	p.A17T	0.106	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC	ENSG00000137171				105	0	0	225	71	23.9865
FAM83B	0	genome.wustl.edu	37	6	54806610	54806610	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	54806610	54806610	T	G	SNP	FAM83B	ENST00000306858	human	ensembl	74_37	+1	known	missense	c.2841	p.I947M	0.470	NULL	pfam_DUF1669	-	no_errors	FAM83B	HGNC	ENSG00000168143				74	0	0	123	16	11.5108
DST	0	genome.wustl.edu	37	6	56819242	56819242	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	56819242	56819242	C	T	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	silent	c.144	p.P48	0.985	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				31	0	0	69	21	23.3333
COL9A1	0	genome.wustl.edu	37	6	71004163	71004163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	71004163	71004163	C	T	SNP	COL9A1	ENST00000357250	human	ensembl	74_37	-1	known	missense	c.403	p.D135N	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL9A1	HGNC	ENSG00000112280				146	0	0	88	54	38.0282
KCNQ5	0	genome.wustl.edu	37	6	73332128	73332128	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	73332128	73332128	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.211	p.G71S	0.999	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760				13	0	0	6	12	66.6667
IBTK	0	genome.wustl.edu	37	6	82936897	82936897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	82936897	82936897	C	T	SNP	IBTK	ENST00000503400	human	ensembl	74_37	-1	known	missense	c.666	p.M222I	0.001	NULL	pfam_Ankyrin_rpt,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700				74	0	0	22	45	67.1642
MDN1	0	genome.wustl.edu	37	6	90417179	90417179	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	6	90417179	90417179	C	G	SNP	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	missense	c.7915	p.D2639H	1.000	pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				34	0	0	37	12	24.4898
LMOD2	0	genome.wustl.edu	37	7	123302309	123302309	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	123302309	123302309	C	T	SNP	LMOD2	ENST00000458573	human	ensembl	74_37	+1	known	silent	c.669	p.N223	1.000	NULL	pfam_Tropomodulin,pfscan_WH2_dom	-	no_errors	LMOD2	HGNC	ENSG00000170807				48	0	0	18	43	70.4918
ADCK2	0	genome.wustl.edu	37	7	140373462	140373462	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	140373462	140373462	T	C	SNP	ADCK2	ENST00000072869	human	ensembl	74_37	+1	known	missense	c.332	p.F111S	0.654	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK2	HGNC	ENSG00000133597				216	0	0	204	12	5.55556
CASP2	0	genome.wustl.edu	37	7	142989724	142989724	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	142989724	142989724	C	T	SNP	CASP2	ENST00000310447	human	ensembl	74_37	+1	known	silent	c.408	p.Y136	0.902	pirsf_Caspase_IL-1_beta	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP2	HGNC	ENSG00000106144				54	0	0	11	36	76.5957
OR2A2	0	genome.wustl.edu	37	7	143807364	143807364	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	143807364	143807364	A	C	SNP	OR2A2	ENST00000408979	human	ensembl	74_37	+1	known	missense	c.689	p.K230T	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A2	HGNC	ENSG00000221989				137	0	0	49	122	71.345
AGMO	0	genome.wustl.edu	37	7	15405215	15405215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	15405215	15405215	C	T	SNP	AGMO	ENST00000342526	human	ensembl	74_37	-1	known	missense	c.1187	p.R396H	0.928	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	AGMO	HGNC	ENSG00000187546				38	0	0	38	50	56.8182
PAXIP1-AS2	0	genome.wustl.edu	37	7	154738068	154738068	+	Splice_Site	SNP	A	A	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	154738068	154738068	A	C	SNP	PAXIP1-AS2	ENST00000411526	human	ensembl	74_37	+1	known	splice_site	c.318-2	e4-2	1.000	-	-	-	no_errors	PAXIP1-AS2	HGNC	ENSG00000214106				122	0	0	111	37	25
PTPRN2	0	genome.wustl.edu	37	7	157931128	157931128	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	157931128	157931128	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.1059	p.D353	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				134	0	0	139	27	16.2651
NFE2L3	0	genome.wustl.edu	37	7	26224557	26224557	+	Silent	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	26224557	26224557	T	C	SNP	NFE2L3	ENST00000056233	human	ensembl	74_37	+1	known	silent	c.1239	p.D413	1.000	NULL	pfam_bZIP,pfam_bZIP_Maf,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	NFE2L3	HGNC	ENSG00000050344				89	0	0	72	73	50.3448
EPDR1	0	genome.wustl.edu	37	7	37989872	37989872	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	37989872	37989872	C	A	SNP	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	nonsense	c.909	p.Y303*	1.000	pfam_Ependymin,smart_Ependymin	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289				22	0	0	36	11	23.4043
ZNF479	0	genome.wustl.edu	37	7	57188696	57188696	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	57188696	57188696	A	T	SNP	ZNF479	ENST00000331162	human	ensembl	74_37	-1	known	nonsense	c.426	p.Y142*	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177				96	0	0	112	34	23.2877
DNAJC30	0	genome.wustl.edu	37	7	73097334	73097334	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	73097334	73097334	G	A	SNP	DNAJC30	ENST00000395176	human	ensembl	74_37	-1	known	silent	c.420	p.T140	0.086	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC30	HGNC	ENSG00000176410				37	0	0	17	15	46.875
EXT1	0	genome.wustl.edu	37	8	118834812	118834812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	118834812	118834812	G	A	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1309	p.H437Y	1.000	NULL	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				46	0	0	59	4	6.34921
TG	0	genome.wustl.edu	37	8	134030213	134030213	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	134030213	134030213	G	T	SNP	TG	ENST00000220616	human	ensembl	74_37	+1	known	missense	c.6753	p.W2251C	1.000	pfam_CarbesteraseB,pirsf_Thyroglobulin	pfam_Thyroglobulin_1,pfam_CarbesteraseB,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Thyroglobulin_1,smart_Thyroglobulin_1,pirsf_Thyroglobulin,pfscan_Thyroglobulin_1	-	no_errors	TG	HGNC	ENSG00000042832				55	0	0	43	18	29.5082
AGO2	0	genome.wustl.edu	37	8	141545600	141545600	+	Silent	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	141545600	141545600	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.2238	p.F746	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				117	0	0	131	32	19.6319
DLGAP2	0	genome.wustl.edu	37	8	1497185	1497185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	1497185	1497185	C	T	SNP	DLGAP2	ENST00000421627	human	ensembl	74_37	+1	known	missense	c.326	p.P109L	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP2	HGNC	ENSG00000198010				29	0	0	43	5	10.4167
TEX15	0	genome.wustl.edu	37	8	30701748	30701748	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	30701748	30701748	A	G	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.4786	p.S1596P	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				99	0	0	115	31	21.2329
TEX15	0	genome.wustl.edu	37	8	30701929	30701929	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	30701929	30701929	C	T	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	silent	c.4605	p.P1535	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				165	1	0.60241	161	56	25.8065
TEX15	0	genome.wustl.edu	37	8	30704291	30704291	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	30704291	30704291	T	G	SNP	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	missense	c.2243	p.K748T	0.015	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				47	0	0	59	18	23.3766
CPQ	0	genome.wustl.edu	37	8	98078419	98078419	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	8	98078419	98078419	G	A	SNP	CPQ	ENST00000220763	human	ensembl	74_37	+1	known	nonsense	c.1236	p.W412*	1.000	pfam_Peptidase_M28,pfam_Peptidase_M20	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	CPQ	HGNC	ENSG00000104324				73	0	0	80	17	17.5258
FAM78A	0	genome.wustl.edu	37	9	134136311	134136311	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	134136311	134136311	C	T	SNP	FAM78A	ENST00000372271	human	ensembl	74_37	-1	known	silent	c.750	p.P250	0.536	NULL	NULL	-	no_errors	FAM78A	HGNC	ENSG00000126882				184	0	0	105	80	43.2432
ADAMTS13	0	genome.wustl.edu	37	9	136279592	136279592	+	RNA	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	136279592	136279592	G	A	SNP	ADAMTS13	ENST00000485925	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAMTS13	HGNC	ENSG00000160323				12	0	0	5	4	44.4444
ADAMTSL2	0	genome.wustl.edu	37	9	136405800	136405800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	136405800	136405800	G	A	SNP	ADAMTSL2	ENST00000393061	human	ensembl	74_37	+1	known	missense	c.820	p.A274T	1.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL2	HGNC	ENSG00000197859				92	0	0	89	11	11
RNA5SP284	0	genome.wustl.edu	37	9	68408948	68408948	+	RNA	SNP	C	C	G			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	68408948	68408948	C	G	SNP	RNA5SP284	ENST00000384547	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.037	-	-	-	no_errors	RNA5SP284	HGNC	ENSG00000207277				13	0	0	4	4	50
PTCH1	0	genome.wustl.edu	37	9	98241322	98241322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	98241322	98241322	G	A	SNP	PTCH1	ENST00000331920	human	ensembl	74_37	-1	known	missense	c.1175	p.A392V	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920				49	0	0	69	18	20.6897
MT-RNR1	0	genome.wustl.edu	37	MT	1362	1362	+	RNA	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	MT	1362	1362	G	A	SNP	MT-RNR1	ENST00000389680	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR1	HGNC	ENSG00000211459				218	0	0	89	15	14.4231
MT-CO2	0	genome.wustl.edu	37	MT	8186	8186	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	MT	8186	8186	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	nonsense	c.601	p.G201*	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712				210	0	0	31	68	68.6869
IGSF1	0	genome.wustl.edu	37	X	130412569	130412569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	X	130412569	130412569	G	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	missense	c.1922	p.P641L	0.813	NULL	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255				62	0	0	105	6	5.40541
KDM5C	0	genome.wustl.edu	37	X	53243871	53243871	+	Silent	SNP	C	C	T			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	X	53243871	53243871	C	T	SNP	KDM5C	ENST00000375401	human	ensembl	74_37	-1	known	silent	c.1122	p.A374	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012				12	0	0	7	5	41.6667
SH3BGRL	0	genome.wustl.edu	37	X	80552778	80552778	+	RNA	SNP	T	T	C			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	X	80552778	80552778	T	C	SNP	SH3BGRL	ENST00000463546	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.974	-	-	-	no_errors	SH3BGRL	HGNC	ENSG00000131171				8	0	0	3	6	66.6667
COPB1	0	genome.wustl.edu	37	11	14520474	14520475	+	Frame_Shift_Ins	INS	-	-	GGTTTCTG			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	11	14520474	14520475	-	GGTTTCTG	INS	COPB1	ENST00000249923	human	ensembl	74_37	-1	known	frame_shift_ins	c.1_2	p.M0fs	1.000:1.000	NULL	pfam_Coatomer_bsu_C,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_COPB1	-	no_errors	COPB1	HGNC	ENSG00000129083				35	0	0	32	4	11.1111
GAS6	0	genome.wustl.edu	37	13	114542799	114542799	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	13	114542799	114542799	T	-	DEL	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_del	c.368	p.N123fs	0.196	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				249	0	0	65	79	54.8611
TTN-AS1	0	genome.wustl.edu	37	2	179479100	179479100	+	RNA	DEL	A	A	-			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	2	179479100	179479100	A	-	DEL	TTN-AS1	ENST00000456053	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				60	0	0	66	16	19.5122
SGOL1	0	genome.wustl.edu	37	3	20216050	20216050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	3	20216050	20216050	T	-	DEL	SGOL1	ENST00000263753	human	ensembl	74_37	-1	known	frame_shift_del	c.973	p.M325fs	0.000	NULL	pfam_Shugoshin_N,pfam_Shugoshin_C	-	no_errors	SGOL1	HGNC	ENSG00000129810				23	0	0	23	3	11.5385
METTL14	0	genome.wustl.edu	37	4	119631250	119631261	+	In_Frame_Del	DEL	TACAGAAGAAAT	TACAGAAGAAAT	-			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	TACAGAAGAAAT	TACAGAAGAAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	4	119631250	119631261	TACAGAAGAAAT	-	DEL	METTL14	ENST00000388822	human	ensembl	74_37	+1	known	in_frame_del	c.1164_1175	p.TEEI389in_frame_del	0.999:1.000:1.000:0.513:1.000:1.000:0.998:1.000:1.000:0.998:1.000:0.999	NULL	pfam_MT-A70-like,pfscan_MT-A70-like	-	no_errors	METTL14	HGNC	ENSG00000145388				98	0	0	66	14	17.5
LPCAT1	0	genome.wustl.edu	37	5	1471036	1471052	+	Frame_Shift_Del	DEL	CGCTCTGTGGGGAGAGA	CGCTCTGTGGGGAGAGA	-			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	CGCTCTGTGGGGAGAGA	CGCTCTGTGGGGAGAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	5	1471036	1471052	CGCTCTGTGGGGAGAGA	-	DEL	LPCAT1	ENST00000283415	human	ensembl	74_37	-1	known	frame_shift_del	c.1183_1180	p.S394fs	0.434:0.005:0.013:0.016	smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	LPCAT1	HGNC	ENSG00000153395				93	0	0	52	17	24.6377
DLX6	0	genome.wustl.edu	37	7	96635420	96635421	+	In_Frame_Ins	INS	-	-	GCC			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	7	96635420	96635421	-	GCC	INS	DLX6	ENST00000518156	human	ensembl	74_37	+1	known	in_frame_ins	c.131_132	p.48in_frame_insP	0.990:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX6	HGNC	ENSG00000006377				14	0	0	11	6	35.2941
SETX	0	genome.wustl.edu	37	9	135158547	135158548	+	RNA	INS	-	-	A			TCGA-BR-A4CQ-01A-12D-A25D-08	TCGA-BR-A4CQ-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	890f6174-6b66-43a0-a669-1e45b3b86963	51dbd017-e043-4ae0-86d5-a4a2dd76bf2c	9	135158547	135158548	-	A	INS	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028:0.010	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				14	0	0	15	4	21.0526
