Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADORA3	0	genome.wustl.edu	37	1	112045632	112045632	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	112045632	112045632	G	A	SNP	ADORA3	ENST00000369716	human	ensembl	74_37	-1	known	silent	c.345	p.T115	0.027	pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	-	no_errors	ADORA3	HGNC	ENSG00000121933				48	0	0	70	24	25.5319
ST7L	0	genome.wustl.edu	37	1	113126609	113126609	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	113126609	113126609	G	A	SNP	ST7L	ENST00000358039	human	ensembl	74_37	-1	known	missense	c.841	p.H281Y	1.000	pfam_ST7	pfam_ST7	-	no_errors	ST7L	HGNC	ENSG00000007341				122	0	0	87	56	39.1608
NBPF10	0	genome.wustl.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	145367767	145367767	G	A	SNP	NBPF10	ENST00000342960	human	ensembl	74_37	+1	known	missense	c.10363	p.E3455K	0.000	NULL	pfam_NBPF_dom	-	no_errors	NBPF10	HGNC	ENSG00000163386				61	0	0	79	5	5.95238
ANKRD34A	0	genome.wustl.edu	37	1	145474797	145474797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	145474797	145474797	G	A	SNP	ANKRD34A	ENST00000323397	human	ensembl	74_37	+1	known	missense	c.1469	p.G490E	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD34A	HGNC	ENSG00000181039				23	0	0	33	2	5.71429
HAPLN2	0	genome.wustl.edu	37	1	156594403	156594403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	156594403	156594403	G	T	SNP	HAPLN2	ENST00000255039	human	ensembl	74_37	+1	known	missense	c.567	p.E189D	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link,prints_Link	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN2	HGNC	ENSG00000132702				17	0	0	47	4	7.84314
OR2T8	0	genome.wustl.edu	37	1	248084854	248084854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	248084854	248084854	A	G	SNP	OR2T8	ENST00000319968	human	ensembl	74_37	+1	known	missense	c.535	p.T179A	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462				20	0	0	27	11	28.9474
SRRM1	0	genome.wustl.edu	37	1	24993374	24993374	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	24993374	24993374	C	A	SNP	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	missense	c.1733	p.P578H	1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				44	0	0	102	7	6.42202
PEF1	0	genome.wustl.edu	37	1	32098238	32098238	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	32098238	32098238	G	A	SNP	PEF1	ENST00000373703	human	ensembl	74_37	-1	known	silent	c.483	p.N161	1.000	smart_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	PEF1	HGNC	ENSG00000162517				45	0	0	42	6	12.5
PRDM16	0	genome.wustl.edu	37	1	3334448	3334448	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	3334448	3334448	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.2748	p.A916	0.240	NULL	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				249	0	0	200	141	41.349
FAM183A	0	genome.wustl.edu	37	1	43621984	43621984	+	Nonstop_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	43621984	43621984	G	T	SNP	FAM183A	ENST00000410048	human	ensembl	74_37	+1	putative	nonstop	c.321	p.*107Y	0.124	NULL	NULL	-	no_errors	FAM183A	HGNC	ENSG00000186973				131	0	0	105	78	42.623
PIK3CD	0	genome.wustl.edu	37	1	9784136	9784136	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	9784136	9784136	C	T	SNP	PIK3CD	ENST00000536656	human	ensembl	74_37	+1	known	nonsense	c.2776	p.R926*	1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CD	HGNC	ENSG00000171608				189	0	0	142	102	41.8033
PHYH	0	genome.wustl.edu	37	10	13340203	13340203	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	10	13340203	13340203	G	A	SNP	PHYH	ENST00000263038	human	ensembl	74_37	-1	known	missense	c.118	p.H40Y	0.000	NULL	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537				55	0	0	31	2	6.06061
ANKRD22	0	genome.wustl.edu	37	10	90591731	90591731	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	10	90591731	90591731	A	C	SNP	ANKRD22	ENST00000371930	human	ensembl	74_37	-1	known	missense	c.74	p.V25G	0.023	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD22	HGNC	ENSG00000152766				407	1	0.245098	184	90	32.8467
CXCR5	0	genome.wustl.edu	37	11	118765361	118765361	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	118765361	118765361	A	T	SNP	CXCR5	ENST00000292174	human	ensembl	74_37	+1	known	missense	c.1108	p.T370S	0.996	prints_Chemokine_CXCR5	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CXCR5,prints_GPCR_Rhodpsn,prints_Chemokine_CXCR4,prints_ATII_rcpt	-	no_errors	CXCR5	HGNC	ENSG00000160683				48	0	0	58	18	23.6842
MRGPRX2	0	genome.wustl.edu	37	11	19077306	19077306	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	19077306	19077306	C	A	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.644	p.G215V	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				54	0	0	62	19	23.4568
DAGLA	0	genome.wustl.edu	37	11	61504739	61504739	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	61504739	61504739	G	A	SNP	DAGLA	ENST00000257215	human	ensembl	74_37	+1	known	missense	c.1457	p.R486H	1.000	pfam_Lipase_3	pfam_Lipase_3	-	no_errors	DAGLA	HGNC	ENSG00000134780				294	0	0	252	119	32.0755
MALAT1	0	genome.wustl.edu	37	11	65268685	65268685	+	RNA	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	65268685	65268685	A	G	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				45	0	0	22	19	46.3415
SIPA1	0	genome.wustl.edu	37	11	65413832	65413832	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	65413832	65413832	G	A	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	silent	c.1404	p.T468	0.093	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445				73	0	0	42	48	53.3333
GAB2	0	genome.wustl.edu	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	11	77937657	77937657	C	G	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	missense	c.1061	p.R354P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				100	0	0	66	47	41.5929
ULK1	0	genome.wustl.edu	37	12	132403762	132403762	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	12	132403762	132403762	G	C	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	missense	c.2517	p.E839D	1.000	pfam_Ser/Thr_kinase_C,pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169				25	0	0	43	15	25.8621
CD163	0	genome.wustl.edu	37	12	7635248	7635248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	12	7635248	7635248	G	A	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.3238	p.R1080W	0.036	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575				203	2	0.97561	158	185	53.9359
ZNF705A	0	genome.wustl.edu	37	12	8329955	8329955	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	12	8329955	8329955	C	G	SNP	ZNF705A	ENST00000359286	human	ensembl	74_37	+1	known	missense	c.679	p.P227A	0.951	pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705A	HGNC	ENSG00000196946				70	0	0	87	22	20.1835
CCER1	0	genome.wustl.edu	37	12	91347821	91347821	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	12	91347821	91347821	G	A	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	silent	c.699	p.N233	0.000	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				338	0	0	183	222	54.8148
KLRG1	0	genome.wustl.edu	37	12	9162024	9162024	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	12	9162024	9162024	T	A	SNP	KLRG1	ENST00000266551	human	ensembl	74_37	+1	known	missense	c.461	p.I154N	0.951	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG1	HGNC	ENSG00000139187				48	0	0	64	26	28.8889
RB1	0	genome.wustl.edu	37	13	48941648	48941648	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	13	48941648	48941648	C	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	nonsense	c.958	p.R320*	1.000	NULL	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687				52	0	0	5	82	94.2529
LOC101930578	0	genome.wustl.edu	37	13	52864001	52864001	+	RNA	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	13	52864001	52864001	A	G	SNP	LOC101930578	ENST00000451298	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	RP11-248G5.8	Clone_based_vega_gene	ENSG00000217576				17	0	0	45	5	10
AHNAK2	0	genome.wustl.edu	37	14	105412294	105412294	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	14	105412294	105412294	A	G	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.9494	p.L3165S	0.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567				270	2	0.735294	51	7	12.069
OR4K2	0	genome.wustl.edu	37	14	20344654	20344654	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	14	20344654	20344654	C	A	SNP	OR4K2	ENST00000298642	human	ensembl	74_37	+1	known	missense	c.228	p.F76L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K2	HGNC	ENSG00000165762				218	0	0	179	43	19.3694
OR4K1	0	genome.wustl.edu	37	14	20404344	20404344	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	14	20404344	20404344	G	A	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.519	p.E173	0.889	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				110	0	0	113	16	12.4031
PSMA3	0	genome.wustl.edu	37	14	58724709	58724709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	14	58724709	58724709	G	A	SNP	PSMA3	ENST00000216455	human	ensembl	74_37	+1	known	missense	c.397	p.G133S	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA3	HGNC	ENSG00000100567				64	0	0	42	20	32.2581
CYP11A1	0	genome.wustl.edu	37	15	74637521	74637521	+	Silent	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	15	74637521	74637521	G	T	SNP	CYP11A1	ENST00000268053	human	ensembl	74_37	-1	known	silent	c.489	p.A163	0.026	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_mitochondrial,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP11A1	HGNC	ENSG00000140459				104	0	0	18	84	82.3529
DNAH9	0	genome.wustl.edu	37	17	11648301	11648301	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	11648301	11648301	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.6299	p.A2100V	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				64	0	0	33	37	52.8571
RNF112	0	genome.wustl.edu	37	17	19314763	19314763	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	19314763	19314763	G	A	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	silent	c.42	p.R14	1.000	NULL	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				19	0	0	38	5	11.6279
UBBP4	0	genome.wustl.edu	37	17	21730916	21730916	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	21730916	21730916	G	T	SNP	UBBP4	ENST00000578713	human	ensembl	74_37	+1	putative	missense	c.218	p.R73L	1.000	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBBP4	HGNC	ENSG00000263563				58	0	0	98	6	5.76923
CLUH	0	genome.wustl.edu	37	17	2597254	2597254	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	2597254	2597254	C	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.3054	p.E1018D	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361				52	0	0	48	7	12.7273
SLC6A4	0	genome.wustl.edu	37	17	28538390	28538390	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	28538390	28538390	C	T	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	silent	c.1257	p.A419	0.531	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				48	0	0	51	15	22.7273
MYO1D	0	genome.wustl.edu	37	17	30986445	30986445	+	RNA	SNP	A	A	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	30986445	30986445	A	C	SNP	MYO1D	ENST00000581059	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MYO1D	HGNC	ENSG00000176658				28	0	0	24	10	29.4118
SLFN12L	0	genome.wustl.edu	37	17	33806364	33806364	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	33806364	33806364	G	A	SNP	SLFN12L	ENST00000449046	human	ensembl	74_37	-1	known	silent	c.958	p.L320	0.004	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4	-	no_errors	SLFN12L	HGNC	ENSG00000205045				9	0	0	7	6	46.1538
CDC27	0	genome.wustl.edu	37	17	45234725	45234725	+	Silent	SNP	T	T	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	45234725	45234725	T	C	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	silent	c.501	p.T167	0.999	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				72	0	0	63	10	13.6986
TP53	0	genome.wustl.edu	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	17	7577082	7577082	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.856	p.E286K	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				67	0	0	7	49	87.5
SETBP1	0	genome.wustl.edu	37	18	42532899	42532899	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	18	42532899	42532899	G	A	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.3594	p.P1198	0.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				114	0	0	83	42	33.6
RAB27B	0	genome.wustl.edu	37	18	52555243	52555243	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	18	52555243	52555243	G	T	SNP	RAB27B	ENST00000262094	human	ensembl	74_37	+1	known	missense	c.361	p.A121S	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Ras,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB27B	HGNC	ENSG00000041353				127	0	0	115	45	28.125
LAMA1	0	genome.wustl.edu	37	18	7026103	7026103	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	18	7026103	7026103	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.2277	p.A759	0.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				16	0	0	3	25	89.2857
ZNF253	0	genome.wustl.edu	37	19	20003002	20003002	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	20003002	20003002	G	T	SNP	ZNF253	ENST00000589717	human	ensembl	74_37	+1	known	nonsense	c.946	p.E316*	0.552	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF253	HGNC	ENSG00000256771				43	0	0	57	14	19.7183
ZNF98	0	genome.wustl.edu	37	19	22574985	22574985	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	22574985	22574985	T	A	SNP	ZNF98	ENST00000357774	human	ensembl	74_37	-1	known	missense	c.1052	p.K351I	0.253	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360				35	0	0	4	28	87.5
ZNF726	0	genome.wustl.edu	37	19	24115353	24115353	+	Silent	SNP	T	T	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	24115353	24115353	T	C	SNP	ZNF726	ENST00000322487	human	ensembl	74_37	+1	known	silent	c.435	p.S145	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF726	HGNC	ENSG00000213967				34	0	0	44	16	26.6667
SLC7A10	0	genome.wustl.edu	37	19	33706780	33706780	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	33706780	33706780	C	G	SNP	SLC7A10	ENST00000253188	human	ensembl	74_37	-1	known	missense	c.251	p.G84A	1.000	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A10	HGNC	ENSG00000130876				18	0	0	36	12	25
KLK1	0	genome.wustl.edu	37	19	51322541	51322541	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	51322541	51322541	A	T	SNP	KLK1	ENST00000301420	human	ensembl	74_37	-1	known	missense	c.698	p.V233D	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	KLK1	HGNC	ENSG00000167748				62	0	0	139	22	13.6646
MZF1	0	genome.wustl.edu	37	19	59080638	59080638	+	Nonstop_Mutation	SNP	A	A	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	59080638	59080638	A	C	SNP	MZF1	ENST00000594108	human	ensembl	74_37	-1	putative	nonstop	c.778	p.*260G	0.192	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	-	no_errors	MZF1	HGNC	ENSG00000099326				77	0	0	119	53	30.814
VAV1	0	genome.wustl.edu	37	19	6828175	6828175	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	6828175	6828175	T	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	missense	c.1016	p.L339H	0.989	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968				53	0	0	50	38	43.1818
PNPLA6	0	genome.wustl.edu	37	19	7623881	7623881	+	Silent	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	7623881	7623881	A	G	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	silent	c.3573	p.V1191	0.995	superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444				47	0	0	64	44	40.7407
AFF3	0	genome.wustl.edu	37	2	100623465	100623465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	2	100623465	100623465	G	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.577	p.L193F	0.997	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				46	0	0	36	41	53.2468
CNTNAP5	0	genome.wustl.edu	37	2	125671839	125671839	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	2	125671839	125671839	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.3895	p.E1299K	1.000	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				56	0	0	35	12	25.5319
CACNB4	0	genome.wustl.edu	37	2	152737347	152737347	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	2	152737347	152737347	G	A	SNP	CACNB4	ENST00000539935	human	ensembl	74_37	-1	known	silent	c.357	p.S119	1.000	superfamily_SH3_domain,pfscan_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu	-	no_errors	CACNB4	HGNC	ENSG00000182389				28	0	0	19	7	26.9231
KANSL1L	0	genome.wustl.edu	37	2	211018370	211018370	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	2	211018370	211018370	A	T	SNP	KANSL1L	ENST00000281772	human	ensembl	74_37	-1	known	missense	c.937	p.F313I	1.000	NULL	NULL	-	no_errors	KANSL1L	HGNC	ENSG00000144445				120	0	0	85	38	30.8943
DYNLRB1	0	genome.wustl.edu	37	20	33104255	33104255	+	RNA	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	20	33104255	33104255	C	A	SNP	DYNLRB1	ENST00000480759	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	DYNLRB1	HGNC	ENSG00000125971				230	0	0	194	116	37.4194
CDC25B	0	genome.wustl.edu	37	20	3777323	3777323	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	20	3777323	3777323	T	G	SNP	CDC25B	ENST00000245960	human	ensembl	74_37	+1	known	missense	c.145	p.S49A	0.998	NULL	pfam_MPI_Phosphatase,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom,prints_MPI_Phosphatase	-	no_errors	CDC25B	HGNC	ENSG00000101224				10	0	0	30	3	9.09091
RIMS4	0	genome.wustl.edu	37	20	43386771	43386771	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	20	43386771	43386771	C	T	SNP	RIMS4	ENST00000541604	human	ensembl	74_37	-1	known	silent	c.294	p.L98	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RIMS4	HGNC	ENSG00000101098				53	0	0	46	33	41.7722
SLC17A9	0	genome.wustl.edu	37	20	61594078	61594078	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	20	61594078	61594078	C	T	SNP	SLC17A9	ENST00000370351	human	ensembl	74_37	+1	known	silent	c.600	p.Y200	0.993	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A9	HGNC	ENSG00000101194				200	0	0	244	69	22.0447
MICAL3	0	genome.wustl.edu	37	22	18389499	18389499	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	22	18389499	18389499	C	T	SNP	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	missense	c.80	p.G27E	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156				166	0	0	83	90	52.0231
POM121L9P	0	genome.wustl.edu	37	22	24659809	24659809	+	RNA	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	22	24659809	24659809	G	A	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				8	0	0	9	3	25
TPST2	0	genome.wustl.edu	37	22	26932452	26932452	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	22	26932452	26932452	C	T	SNP	TPST2	ENST00000338754	human	ensembl	74_37	-1	known	silent	c.843	p.K281	1.000	superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	TPST2	HGNC	ENSG00000128294				23	0	0	23	16	41.0256
SPSB4	0	genome.wustl.edu	37	3	140785640	140785640	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	3	140785640	140785640	C	A	SNP	SPSB4	ENST00000310546	human	ensembl	74_37	+1	known	missense	c.694	p.P232T	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SOCS_C,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB4	HGNC	ENSG00000175093				31	0	0	7	33	82.5
SCN10A	0	genome.wustl.edu	37	3	38768533	38768533	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	3	38768533	38768533	A	C	SNP	SCN10A	ENST00000449082	human	ensembl	74_37	-1	known	missense	c.2651	p.L884R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313				97	0	0	98	39	28.4672
IL17RB	0	genome.wustl.edu	37	3	53880617	53880617	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	3	53880617	53880617	T	C	SNP	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	0.367	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736				11	0	0	16	9	36
ANKRD50	0	genome.wustl.edu	37	4	125593582	125593582	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	4	125593582	125593582	G	T	SNP	ANKRD50	ENST00000504087	human	ensembl	74_37	-1	known	missense	c.850	p.L284I	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD50	HGNC	ENSG00000151458				32	0	0	3	12	80
LARS	0	genome.wustl.edu	37	5	145543919	145543919	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	145543919	145543919	T	A	SNP	LARS	ENST00000394434	human	ensembl	74_37	-1	known	missense	c.548	p.Y183F	1.000	tigrfam_Leu-tRNA-synth_Ia_arc/euk	pfam_aa-tRNA-synth_Ia,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,tigrfam_Leu-tRNA-synth_Ia_arc/euk	-	no_errors	LARS	HGNC	ENSG00000133706				217	0	0	38	49	56.3218
TLX3	0	genome.wustl.edu	37	5	170736747	170736747	+	Silent	SNP	C	C	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	170736747	170736747	C	A	SNP	TLX3	ENST00000296921	human	ensembl	74_37	+1	known	silent	c.378	p.P126	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	TLX3	HGNC	ENSG00000164438				26	0	0	47	4	7.84314
TBC1D9B	0	genome.wustl.edu	37	5	179292392	179292392	+	RNA	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	179292392	179292392	G	A	SNP	TBC1D9B	ENST00000518085	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TBC1D9B	HGNC	ENSG00000197226				62	0	0	29	13	30.9524
RNF130	0	genome.wustl.edu	37	5	179382632	179382632	+	RNA	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	179382632	179382632	C	T	SNP	RNF130	ENST00000520564	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	RNF130	HGNC	ENSG00000113269				56	0	0	7	16	69.5652
CDH12	0	genome.wustl.edu	37	5	21755828	21755828	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	21755828	21755828	G	A	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.1757	p.T586I	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				88	0	0	147	34	18.7845
NPR3	0	genome.wustl.edu	37	5	32712408	32712408	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	32712408	32712408	C	T	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.526	p.R176C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				113	0	0	345	74	17.6611
DAB2	0	genome.wustl.edu	37	5	39377141	39377141	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	39377141	39377141	G	A	SNP	DAB2	ENST00000320816	human	ensembl	74_37	-1	known	missense	c.1748	p.A583V	0.002	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB2	HGNC	ENSG00000153071				105	0	0	375	93	19.8718
HCN1	0	genome.wustl.edu	37	5	45695964	45695964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	45695964	45695964	C	T	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.232	p.A78T	0.995	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588				15	0	0	19	80	80.8081
MAP1B	0	genome.wustl.edu	37	5	71489953	71489953	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	5	71489953	71489953	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	silent	c.771	p.L257	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				121	0	0	55	20	26.6667
HIST1H4F	0	genome.wustl.edu	37	6	26240797	26240797	+	Silent	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	26240797	26240797	G	T	SNP	HIST1H4F	ENST00000377745	human	ensembl	74_37	+1	known	silent	c.144	p.S48	0.668	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4F	HGNC	ENSG00000198327				51	0	0	73	25	25.5102
SCAND3	0	genome.wustl.edu	37	6	28539899	28539899	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	28539899	28539899	T	C	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.3767	p.D1256G	0.973	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040				63	0	0	49	34	40.9639
SKIV2L	0	genome.wustl.edu	37	6	31933769	31933769	+	Silent	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	31933769	31933769	A	G	SNP	SKIV2L	ENST00000375394	human	ensembl	74_37	+1	known	silent	c.2181	p.A727	0.587	superfamily_P-loop_NTPase,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351				24	0	0	21	10	32.2581
FAM50B	0	genome.wustl.edu	37	6	3850236	3850236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	3850236	3850236	C	T	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.191	p.T64M	0.991	NULL	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				28	0	0	36	31	46.2687
HMGCLL1	0	genome.wustl.edu	37	6	55381357	55381357	+	Silent	SNP	T	T	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	55381357	55381357	T	C	SNP	HMGCLL1	ENST00000398661	human	ensembl	74_37	-1	known	silent	c.432	p.P144	0.987	pfam_PYR_CT,pfscan_PYR_CT	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151				84	0	0	76	12	13.6364
RIMS1	0	genome.wustl.edu	37	6	72984124	72984124	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	72984124	72984124	G	A	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	silent	c.3471	p.P1157	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				34	0	0	39	22	36.0656
GJA10	0	genome.wustl.edu	37	6	90604457	90604457	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	90604457	90604457	G	T	SNP	GJA10	ENST00000369352	human	ensembl	74_37	+1	known	missense	c.270	p.L90F	0.999	pfam_Connexin_N,prints_Connexin	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA10	HGNC	ENSG00000135355				75	0	0	62	15	19.4805
GRM8	0	genome.wustl.edu	37	7	126173853	126173853	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	7	126173853	126173853	G	A	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	missense	c.1583	p.T528M	0.864	pfam_GPCR_3_9-Cys_dom	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				78	0	0	91	34	27.2
SLC13A4	0	genome.wustl.edu	37	7	135366192	135366192	+	RNA	SNP	C	C	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	7	135366192	135366192	C	G	SNP	SLC13A4	ENST00000491630	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC13A4	HGNC	ENSG00000164707				23	0	0	13	5	27.7778
ATG9B	0	genome.wustl.edu	37	7	150714339	150714339	+	Silent	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	7	150714339	150714339	A	G	SNP	ATG9B	ENST00000377974	human	ensembl	74_37	-1	known	silent	c.2073	p.T691	0.587	NULL	pfam_Autophagy-rel_prot_9	-	no_errors	ATG9B	HGNC	ENSG00000181652				54	0	0	38	19	33.3333
DPP6	0	genome.wustl.edu	37	7	154237681	154237681	+	Silent	SNP	T	T	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	7	154237681	154237681	T	A	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	silent	c.522	p.T174	0.055	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				19	0	0	12	8	40
IKZF1	0	genome.wustl.edu	37	7	50450356	50450356	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	7	50450356	50450356	C	T	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	silent	c.540	p.Y180	0.967	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				29	0	0	20	20	50
PRKDC	0	genome.wustl.edu	37	8	48772214	48772214	+	Silent	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	8	48772214	48772214	G	A	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.6162	p.S2054	0.997	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				141	0	0	26	89	77.3913
TNC	0	genome.wustl.edu	37	9	117845084	117845084	+	Silent	SNP	A	A	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	9	117845084	117845084	A	G	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	silent	c.2134	p.L712	0.940	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				42	0	0	41	9	18
FAM73B	0	genome.wustl.edu	37	9	131830597	131830597	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	9	131830597	131830597	A	T	SNP	FAM73B	ENST00000358369	human	ensembl	74_37	+1	known	missense	c.1390	p.S464C	1.000	pfam_DUF2217	pfam_DUF2217	-	no_errors	FAM73B	HGNC	ENSG00000148343				47	0	0	53	5	8.62069
LAMC3	0	genome.wustl.edu	37	9	133914363	133914363	+	Silent	SNP	C	C	T			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	9	133914363	133914363	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.1089	p.H363	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				76	0	0	85	34	28.5714
PRRC2B	0	genome.wustl.edu	37	9	134322501	134322501	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	9	134322501	134322501	G	C	SNP	PRRC2B	ENST00000357304	human	ensembl	74_37	+1	known	missense	c.885	p.Q295H	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2B	HGNC	ENSG00000130723				61	0	0	40	15	27.2727
IRS4	0	genome.wustl.edu	37	X	107979402	107979402	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	X	107979402	107979402	G	A	SNP	IRS4	ENST00000372129	human	ensembl	74_37	-1	known	missense	c.173	p.T58M	0.043	NULL	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1,prints_Insln_rcpt_S1	-	no_errors	IRS4	HGNC	ENSG00000133124				89	0	0	58	45	43.6893
CPXCR1	0	genome.wustl.edu	37	X	88009104	88009104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	X	88009104	88009104	G	A	SNP	CPXCR1	ENST00000276127	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	0.000	NULL	pfscan_Znf_C2H2	-	no_errors	CPXCR1	HGNC	ENSG00000147183				39	0	0	4	24	85.7143
KCND3	0	genome.wustl.edu	37	1	112524444	112524445	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	1	112524444	112524445	-	G	INS	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	frame_shift_ins	c.905_904	p.R302fs	1.000:1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				92	0	0	141	12	7.84314
MYO16	0	genome.wustl.edu	37	13	109518544	109518544	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	13	109518544	109518544	T	-	DEL	MYO16	ENST00000356711	human	ensembl	74_37	+1	known	frame_shift_del	c.1313	p.L439fs	0.833	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC	ENSG00000041515				77	0	0	149	33	18.1319
PRKD1	0	genome.wustl.edu	37	14	30103740	30103740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	14	30103740	30103740	T	-	DEL	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	frame_shift_del	c.1198	p.T400fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				220	0	0	115	73	38.8298
SLC7A10	0	genome.wustl.edu	37	19	33706778	33706778	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	33706778	33706778	C	-	DEL	SLC7A10	ENST00000253188	human	ensembl	74_37	-1	known	frame_shift_del	c.253	p.V85fs	0.924	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A10	HGNC	ENSG00000130876				18	0	0	39	12	23.5294
PTH2	0	genome.wustl.edu	37	19	49926531	49926533	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	19	49926531	49926533	CAG	-	DEL	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	in_frame_del	c.66_64	p.L22in_frame_del	0.016:0.132:0.132	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538				25	0	0	88	5	5.37634
KCNQ2	0	genome.wustl.edu	37	20	62046425	62046441	+	Frame_Shift_Del	DEL	GGCAGCCACGCCTCGGG	GGCAGCCACGCCTCGGG	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	GGCAGCCACGCCTCGGG	GGCAGCCACGCCTCGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	20	62046425	62046441	GGCAGCCACGCCTCGGG	-	DEL	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	frame_shift_del	c.1272_1256	p.P419fs	1.000:1.000:0.893:0.635:0.694:0.716:0.707:0.730:0.728:0.667:0.995:0.998:0.949:1.000:1.000:1.000:1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				60	0	0	47	9	16.0714
CCDC170	0	genome.wustl.edu	37	6	151936585	151936585	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4CR-01A-11D-A24D-08	TCGA-BR-A4CR-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c2e6ade-14ed-45e9-bc73-dde1f69349ee	9ee683c7-c2ae-4b00-a340-e6d0daf7384e	6	151936585	151936585	C	-	DEL	CCDC170	ENST00000367290	human	ensembl	74_37	+1	known	frame_shift_del	c.1739	p.T580fs	1.000	superfamily_Prefoldin	superfamily_Prefoldin,superfamily_Smac_DIABLO-like	-	no_errors	CCDC170	HGNC	ENSG00000120262				191	0	0	134	83	38.2488
