Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
GJA8	0	genome.wustl.edu	37	1	147380425	147380425	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	147380425	147380425	G	A	SNP	GJA8	ENST00000240986	human	ensembl	74_37	+1	known	missense	c.343	p.G115S	0.952	NULL	pfam_Connexin_N,pfam_Connexin50,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin50	-	no_errors	GJA8	HGNC	ENSG00000121634				132	0	0	95	24	20.1681
KIRREL	0	genome.wustl.edu	37	1	158063171	158063171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	158063171	158063171	C	T	SNP	KIRREL	ENST00000368173	human	ensembl	74_37	+1	known	missense	c.1562	p.A521V	0.599	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL	HGNC	ENSG00000183853				192	0	0	172	21	10.8808
PBX1	0	genome.wustl.edu	37	1	164761730	164761730	+	Splice_Site	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	164761730	164761730	G	C	SNP	PBX1	ENST00000420696	human	ensembl	74_37	+1	known	splice_site	c.266-1	e3-1	1.000	-	-	-	no_errors	PBX1	HGNC	ENSG00000185630				49	0	0	43	7	14
PAPPA2	0	genome.wustl.edu	37	1	176668245	176668245	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	176668245	176668245	A	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.2756	p.D919A	0.998	superfamily_Fibronectin_type3	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				150	0	0	147	8	5.16129
CFH	0	genome.wustl.edu	37	1	196695654	196695654	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	196695654	196695654	A	G	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	missense	c.1928	p.E643G	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971				31	0	0	76	20	20.8333
PLXNA2	0	genome.wustl.edu	37	1	208201480	208201480	+	Silent	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	208201480	208201480	G	C	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.5463	p.L1821	0.999	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				183	0	0	199	27	11.9469
IARS2	0	genome.wustl.edu	37	1	220298662	220298662	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	220298662	220298662	C	G	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.1724	p.P575R	0.997	pfam_aa-tRNA-synth_Ia,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				28	0	0	55	12	17.9104
OR14K1	0	genome.wustl.edu	37	1	247902190	247902190	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	247902190	247902190	T	G	SNP	OR14K1	ENST00000283225	human	ensembl	74_37	+1	known	missense	c.274	p.F92V	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR14K1	HGNC	ENSG00000153230				79	0	0	109	19	14.8438
PTPRU	0	genome.wustl.edu	37	1	29638252	29638252	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	29638252	29638252	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.3083	p.R1028H	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				284	0	0	252	54	17.6471
CYP4B1	0	genome.wustl.edu	37	1	47280902	47280902	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	47280902	47280902	C	T	SNP	CYP4B1	ENST00000371923	human	ensembl	74_37	+1	known	missense	c.1039	p.R347C	0.033	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4B1	HGNC	ENSG00000142973				51	0	0	69	8	10.3896
CYP4Z2P	0	genome.wustl.edu	37	1	47366097	47366097	+	RNA	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	47366097	47366097	A	G	SNP	CYP4Z2P	ENST00000505841	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	CYP4Z2P	HGNC	ENSG00000154198				14	0	0	24	3	11.1111
LRRC7	0	genome.wustl.edu	37	1	70505052	70505052	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	70505052	70505052	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3431	p.G1144D	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				168	0	0	149	23	13.3721
LRRIQ3	0	genome.wustl.edu	37	1	74507414	74507414	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	74507414	74507414	C	G	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.1201	p.E401Q	0.000	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				53	0	0	106	21	16.5354
PYROXD2	0	genome.wustl.edu	37	10	100150734	100150734	+	RNA	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	10	100150734	100150734	G	C	SNP	PYROXD2	ENST00000483923	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	PYROXD2	HGNC	ENSG00000119943				187	0	0	212	44	17.1875
MKI67	0	genome.wustl.edu	37	10	129921418	129921418	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	10	129921418	129921418	G	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.108	p.D36E	0.986	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				45	0	0	71	16	18.3908
ENKUR	0	genome.wustl.edu	37	10	25273693	25273693	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	10	25273693	25273693	T	A	SNP	ENKUR	ENST00000331161	human	ensembl	74_37	-1	known	nonsense	c.736	p.K246*	1.000	NULL	NULL	-	no_errors	ENKUR	HGNC	ENSG00000151023				35	0	0	64	11	14.6667
PFKFB3	0	genome.wustl.edu	37	10	6255678	6255678	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	10	6255678	6255678	C	T	SNP	PFKFB3	ENST00000540253	human	ensembl	74_37	+1	known	missense	c.211	p.R71C	1.000	pfam_6Phosfructo_kin,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525				235	0	0	199	46	18.7755
HKDC1	0	genome.wustl.edu	37	10	71003047	71003047	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	10	71003047	71003047	C	T	SNP	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	silent	c.801	p.D267	0.242	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				148	0	0	144	39	21.3115
KMT2A	0	genome.wustl.edu	37	11	118375821	118375821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	118375821	118375821	C	T	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.9205	p.P3069S	1.000	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				130	0	0	171	42	19.7183
MUC5B	0	genome.wustl.edu	37	11	1274131	1274131	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	1274131	1274131	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.15147	p.N5049	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				58	0	0	28	17	37.7778
PDE3B	0	genome.wustl.edu	37	11	14889193	14889193	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	14889193	14889193	C	A	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.3028	p.P1010T	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270				63	0	0	70	18	20.4545
INSC	0	genome.wustl.edu	37	11	15267667	15267667	+	RNA	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	15267667	15267667	C	T	SNP	INSC	ENST00000526102	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INSC	HGNC	ENSG00000188487				36	0	0	27	5	15.625
UBXN1	0	genome.wustl.edu	37	11	62445472	62445472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	62445472	62445472	G	A	SNP	UBXN1	ENST00000294119	human	ensembl	74_37	-1	known	missense	c.409	p.R137W	1.000	NULL	pfam_UBX,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_UBX,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBX	-	no_errors	UBXN1	HGNC	ENSG00000162191				106	0	0	69	15	17.8571
PRKCDBP	0	genome.wustl.edu	37	11	6341682	6341682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	6341682	6341682	C	T	SNP	PRKCDBP	ENST00000303927	human	ensembl	74_37	-1	known	missense	c.25	p.G9R	0.844	NULL	NULL	-	no_errors	PRKCDBP	HGNC	ENSG00000170955				36	0	0	28	125	81.6993
FERMT3	0	genome.wustl.edu	37	11	63978840	63978840	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	63978840	63978840	C	T	SNP	FERMT3	ENST00000279227	human	ensembl	74_37	+1	known	missense	c.608	p.P203L	0.978	smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781				31	0	0	24	7	22.5806
CDC42BPG	0	genome.wustl.edu	37	11	64597428	64597428	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	64597428	64597428	G	T	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	missense	c.3482	p.A1161E	0.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				121	0	0	65	16	19.7531
GAB2	0	genome.wustl.edu	37	11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	77937657	77937657	C	G	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	missense	c.1061	p.R354P	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				132	0	0	60	25	29.4118
GAB2	0	genome.wustl.edu	37	11	77937662	77937662	+	Silent	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	77937662	77937662	T	G	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	silent	c.1056	p.P352	0.999	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327				126	1	0.787402	59	21	26.25
PANX1	0	genome.wustl.edu	37	11	93913992	93913992	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	93913992	93913992	G	C	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	missense	c.1238	p.G413A	0.273	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				45	0	0	89	35	28.2258
PANX1	0	genome.wustl.edu	37	11	93913996	93913996	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	93913996	93913996	G	A	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	silent	c.1242	p.E414	0.062	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				43	0	0	88	34	27.8689
PANX1	0	genome.wustl.edu	37	11	93914021	93914021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	93914021	93914021	G	A	SNP	PANX1	ENST00000227638	human	ensembl	74_37	+1	known	missense	c.1267	p.D423N	1.000	NULL	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX1	HGNC	ENSG00000110218				40	0	0	85	31	26.7241
FAM71C	0	genome.wustl.edu	37	12	100043097	100043097	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	100043097	100043097	A	C	SNP	FAM71C	ENST00000324341	human	ensembl	74_37	+1	known	missense	c.647	p.E216A	0.001	NULL	pfam_DUF3699	-	no_errors	FAM71C	HGNC	ENSG00000180219				96	0	0	190	35	15.5556
CLEC12A	0	genome.wustl.edu	37	12	10134661	10134661	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	10134661	10134661	G	C	SNP	CLEC12A	ENST00000355690	human	ensembl	74_37	+1	known	missense	c.604	p.G202R	0.942	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC12A	HGNC	ENSG00000172322				17	0	0	36	5	12.1951
MYO1H	0	genome.wustl.edu	37	12	109877497	109877497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	109877497	109877497	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	missense	c.2338	p.V780M	0.022	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				21	0	0	20	14	41.1765
MED13L	0	genome.wustl.edu	37	12	116453041	116453041	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	116453041	116453041	C	T	SNP	MED13L	ENST00000281928	human	ensembl	74_37	-1	known	missense	c.1048	p.V350I	0.244	pfam_Mediator_Med13_N_met/fun	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13L	HGNC	ENSG00000123066				78	0	0	168	22	11.5789
DNAH10	0	genome.wustl.edu	37	12	124343737	124343737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	124343737	124343737	G	A	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	missense	c.6317	p.R2106H	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				41	0	0	31	6	16.2162
GLT1D1	0	genome.wustl.edu	37	12	129442113	129442113	+	Silent	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	129442113	129442113	A	G	SNP	GLT1D1	ENST00000442111	human	ensembl	74_37	+1	known	silent	c.804	p.V268	0.724	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	GLT1D1	HGNC	ENSG00000151948				34	0	0	82	9	9.89011
GSG1	0	genome.wustl.edu	37	12	13241739	13241739	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	13241739	13241739	G	A	SNP	GSG1	ENST00000351606	human	ensembl	74_37	-1	known	nonsense	c.538	p.R180*	1.000	NULL	pfam_GSG-1	-	no_errors	GSG1	HGNC	ENSG00000111305				47	0	0	62	13	17.3333
SLCO1B1	0	genome.wustl.edu	37	12	21355482	21355482	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	21355482	21355482	A	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.1193	p.K398T	0.991	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538				23	0	0	75	13	14.7727
RECQL	0	genome.wustl.edu	37	12	21623974	21623974	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	21623974	21623974	C	T	SNP	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	missense	c.1726	p.A576T	1.000	pfam_RQC_domain	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				24	0	0	60	18	23.0769
ABCD2	0	genome.wustl.edu	37	12	39994380	39994380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	39994380	39994380	G	A	SNP	ABCD2	ENST00000308666	human	ensembl	74_37	-1	known	missense	c.1639	p.P547S	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCD2	HGNC	ENSG00000173208				89	0	0	192	33	14.6667
KCNA5	0	genome.wustl.edu	37	12	5153796	5153796	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	5153796	5153796	C	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	silent	c.483	p.N161	0.997	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				118	0	0	120	15	11.1111
SLC39A5	0	genome.wustl.edu	37	12	56630725	56630725	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	12	56630725	56630725	C	T	SNP	SLC39A5	ENST00000266980	human	ensembl	74_37	+1	known	silent	c.1218	p.F406	1.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A5	HGNC	ENSG00000139540				517	0	0	497	77	13.4146
NBEA	0	genome.wustl.edu	37	13	36006473	36006473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	13	36006473	36006473	C	T	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.6247	p.R2083C	1.000	pfam_DUF1088	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				16	0	0	17	4	19.0476
FREM2	0	genome.wustl.edu	37	13	39262682	39262682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	13	39262682	39262682	G	A	SNP	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	missense	c.1201	p.D401N	1.000	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893				83	0	0	75	25	25
SALL2	0	genome.wustl.edu	37	14	21992064	21992064	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	14	21992064	21992064	C	A	SNP	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	missense	c.1798	p.D600Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				81	0	0	87	23	20.9091
FAM179B	0	genome.wustl.edu	37	14	45497516	45497516	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	14	45497516	45497516	G	T	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.3642	p.E1214D	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				75	0	0	192	56	22.5806
ENSG00000259093	0	genome.wustl.edu	37	14	63589798	63589798	+	RNA	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	14	63589798	63589798	C	T	SNP	ENSG00000259093	ENST00000554921	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-1112J20.2	Clone_based_vega_gene	ENSG00000259093				27	0	0	32	9	21.9512
PLEKHG3	0	genome.wustl.edu	37	14	65208577	65208577	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	14	65208577	65208577	C	T	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.2342	p.P781L	0.918	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				197	0	0	107	26	19.5489
SERPINA9	0	genome.wustl.edu	37	14	94931130	94931130	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	14	94931130	94931130	G	T	SNP	SERPINA9	ENST00000337425	human	ensembl	74_37	-1	known	missense	c.1018	p.L340I	0.990	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA9	HGNC	ENSG00000170054				52	0	0	93	25	21.1864
PCSK6	0	genome.wustl.edu	37	15	101938652	101938652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	101938652	101938652	G	A	SNP	PCSK6	ENST00000348070	human	ensembl	74_37	-1	known	missense	c.950	p.P317L	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,pfam_PLAC,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,pfscan_PLAC,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK6	HGNC	ENSG00000140479				268	0	0	204	47	18.7251
SERINC4	0	genome.wustl.edu	37	15	44089096	44089096	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	44089096	44089096	C	T	SNP	SERINC4	ENST00000249714	human	ensembl	74_37	-1	known	missense	c.155	p.C52Y	1.000	pfam_TMS_TDE	pfam_TMS_TDE	-	no_errors	SERINC4	HGNC	ENSG00000184716				162	0	0	247	44	15.1203
CYP19A1	0	genome.wustl.edu	37	15	51503185	51503185	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	51503185	51503185	C	T	SNP	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	missense	c.1332	p.M444I	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869				74	0	0	71	11	13.4146
LARP6	0	genome.wustl.edu	37	15	71128781	71128781	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	71128781	71128781	C	T	SNP	LARP6	ENST00000299213	human	ensembl	74_37	-1	known	silent	c.264	p.P88	0.458	pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd,prints_Lupus_La	-	no_errors	LARP6	HGNC	ENSG00000166173				146	0	0	172	52	23.2143
PARP6	0	genome.wustl.edu	37	15	72551962	72551962	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	72551962	72551962	C	G	SNP	PARP6	ENST00000287196	human	ensembl	74_37	-1	known	missense	c.797	p.G266A	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817				256	0	0	489	64	11.5732
PML	0	genome.wustl.edu	37	15	74317252	74317252	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	74317252	74317252	C	T	SNP	PML	ENST00000268058	human	ensembl	74_37	+1	known	missense	c.1238	p.P413L	0.005	pfam_DUF3583	pfam_DUF3583,pfam_Znf_B-box,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	PML	HGNC	ENSG00000140464				73	0	0	70	20	22.2222
CSPG4	0	genome.wustl.edu	37	15	75981657	75981657	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	75981657	75981657	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	silent	c.1749	p.P583	0.001	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				83	0	0	41	19	31.6667
SULT1A1	0	genome.wustl.edu	37	16	28619682	28619682	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	28619682	28619682	G	C	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.302	p.A101G	0.603	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502				111	0	0	178	33	15.6398
NPIPB11	0	genome.wustl.edu	37	16	29415043	29415043	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	29415043	29415043	G	A	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	silent	c.81	p.H27	0.821	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206				17	0	0	33	4	10.8108
CLUAP1	0	genome.wustl.edu	37	16	3586166	3586166	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	3586166	3586166	C	T	SNP	CLUAP1	ENST00000576634	human	ensembl	74_37	+1	known	silent	c.1137	p.D379	0.734	NULL	pfam_Clusterin-associated_protein-1,superfamily_CH-domain	-	no_errors	CLUAP1	HGNC	ENSG00000103351				47	0	0	79	24	23.301
HNRNPA1P48	0	genome.wustl.edu	37	16	51679844	51679844	+	RNA	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	51679844	51679844	C	T	SNP	HNRNPA1P48	ENST00000562726	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HNRNPA1P48	HGNC	ENSG00000224578				55	0	0	66	37	35.9223
SLC6A2	0	genome.wustl.edu	37	16	55729245	55729245	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	55729245	55729245	G	A	SNP	SLC6A2	ENST00000219833	human	ensembl	74_37	+1	known	missense	c.1078	p.A360T	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_noradrenaline	-	no_errors	SLC6A2	HGNC	ENSG00000103546				112	0	0	223	29	11.5079
TAF1C	0	genome.wustl.edu	37	16	84218553	84218553	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	84218553	84218553	G	A	SNP	TAF1C	ENST00000378541	human	ensembl	74_37	-1	known	silent	c.42	p.T14	0.012	NULL	superfamily_WD40_repeat_dom	-	no_errors	TAF1C	HGNC	ENSG00000103168				46	0	0	38	32	45.7143
MTHFSD	0	genome.wustl.edu	37	16	86565700	86565700	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	86565700	86565700	G	T	SNP	MTHFSD	ENST00000360900	human	ensembl	74_37	-1	known	missense	c.1069	p.Q357K	0.557	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_FTHF_cligase,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MTHFSD	HGNC	ENSG00000103248				29	0	0	30	4	11.7647
KCNJ12	0	genome.wustl.edu	37	17	21318690	21318690	+	Silent	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	21318690	21318690	C	A	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	silent	c.36	p.I12	0.606	pfam_K_chnl_inward-rec_Kir_N	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				93	0	0	69	5	6.75676
ATAD5	0	genome.wustl.edu	37	17	29196362	29196362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	29196362	29196362	G	A	SNP	ATAD5	ENST00000321990	human	ensembl	74_37	+1	known	missense	c.3410	p.G1137E	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208				70	0	0	160	23	12.5683
CCT6B	0	genome.wustl.edu	37	17	33286636	33286636	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	33286636	33286636	G	A	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	silent	c.171	p.T57	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				45	0	0	91	15	14.1509
KRTAP4-1	0	genome.wustl.edu	37	17	39341075	39341075	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	39341075	39341075	G	T	SNP	KRTAP4-1	ENST00000398472	human	ensembl	74_37	-1	known	missense	c.32	p.S11Y	1.000	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-1	HGNC	ENSG00000198443				42	0	0	74	11	12.9412
MRPL45P2	0	genome.wustl.edu	37	17	45568405	45568405	+	RNA	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	45568405	45568405	G	A	SNP	MRPL45P2	ENST00000425159	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.848	-	-	-	no_errors	MRPL45P2	HGNC	ENSG00000228782				37	0	0	55	10	15.3846
HOXB5	0	genome.wustl.edu	37	17	46670652	46670652	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	46670652	46670652	G	A	SNP	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	silent	c.393	p.T131	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075				103	0	0	76	19	20
CLTC	0	genome.wustl.edu	37	17	57737878	57737878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	57737878	57737878	C	T	SNP	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	missense	c.1096	p.R366W	1.000	superfamily_ARM-type_fold,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				194	0	0	379	61	13.8636
TP53	0	genome.wustl.edu	37	17	7577556	7577556	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	7577556	7577556	C	G	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.725	p.C242S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				77	0	0	66	36	35.2941
EFNB3	0	genome.wustl.edu	37	17	7611542	7611542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	7611542	7611542	G	A	SNP	EFNB3	ENST00000226091	human	ensembl	74_37	+1	known	missense	c.389	p.R130H	0.981	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947				121	0	0	100	25	20
CCDC40	0	genome.wustl.edu	37	17	78039385	78039385	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	17	78039385	78039385	G	T	SNP	CCDC40	ENST00000397545	human	ensembl	74_37	+1	known	missense	c.1542	p.R514S	0.000	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519				130	0	0	105	23	17.9688
ANKRD30B	0	genome.wustl.edu	37	18	14843045	14843045	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	18	14843045	14843045	C	G	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	missense	c.2774	p.S925C	0.022	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				18	0	0	22	3	12
ZNF521	0	genome.wustl.edu	37	18	22807024	22807024	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	18	22807024	22807024	G	A	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	silent	c.858	p.C286	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				91	0	0	97	16	14.1593
DSG3	0	genome.wustl.edu	37	18	29039945	29039945	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	18	29039945	29039945	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.655	p.R219C	0.951	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				42	0	0	146	34	18.8889
TMEM200C	0	genome.wustl.edu	37	18	5890542	5890542	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	18	5890542	5890542	C	T	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	silent	c.1521	p.S507	0.003	NULL	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				17	0	0	10	3	23.0769
SERPINB7	0	genome.wustl.edu	37	18	61468239	61468239	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	18	61468239	61468239	T	C	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	missense	c.737	p.L246P	0.005	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				71	0	0	119	38	24.2038
ZNF729	0	genome.wustl.edu	37	19	22469330	22469330	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	19	22469330	22469330	G	T	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.3	p.M1I	0.033	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				73	0	0	72	23	24.2105
TMEM91	0	genome.wustl.edu	37	19	41889658	41889658	+	Silent	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	19	41889658	41889658	A	G	SNP	TMEM91	ENST00000392002	human	ensembl	74_37	+1	known	silent	c.399	p.A133	0.994	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	TMEM91	HGNC	ENSG00000142046				114	1	0.869565	56	13	18.8406
ARHGEF1	0	genome.wustl.edu	37	19	42396731	42396731	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	19	42396731	42396731	T	G	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.470	p.V157G	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				90	0	0	38	23	37.7049
PSG8	0	genome.wustl.edu	37	19	43262172	43262172	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	19	43262172	43262172	A	C	SNP	PSG8	ENST00000306511	human	ensembl	74_37	-1	known	missense	c.691	p.F231V	0.530	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PSG8	HGNC	ENSG00000124467				346	0	0	421	64	13.1959
FBN3	0	genome.wustl.edu	37	19	8155087	8155087	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	19	8155087	8155087	G	T	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	nonsense	c.6080	p.S2027*	0.976	pfam_TB_dom,superfamily_TB_dom,pirsf_FBN	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449				73	0	0	56	15	21.1268
DPP10	0	genome.wustl.edu	37	2	116101431	116101431	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	116101431	116101431	G	C	SNP	DPP10	ENST00000393147	human	ensembl	74_37	+1	known	missense	c.226	p.E76Q	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC	ENSG00000175497				42	0	0	75	29	27.8846
EN1	0	genome.wustl.edu	37	2	119604516	119604516	+	Silent	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	119604516	119604516	T	G	SNP	EN1	ENST00000295206	human	ensembl	74_37	-1	known	silent	c.228	p.P76	0.323	NULL	pfam_Homeobox_dom,pfam_Homeobox-engrailed_C-terminal,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeodomain_engrailed,prints_Homeobox_metazoa,prints_Antifreeze_1,prints_K_chnl_volt-dep_Kv1.4	-	no_errors	EN1	HGNC	ENSG00000163064				12	0	0	14	4	22.2222
BIN1	0	genome.wustl.edu	37	2	127864487	127864487	+	Silent	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	127864487	127864487	C	G	SNP	BIN1	ENST00000316724	human	ensembl	74_37	-1	known	silent	c.33	p.A11	0.994	prints_Amphiphysin_2	pfam_BAR_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_2,prints_SH3_domain	-	no_errors	BIN1	HGNC	ENSG00000136717				58	0	0	34	9	20.9302
GPR17	0	genome.wustl.edu	37	2	128408831	128408831	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	128408831	128408831	G	T	SNP	GPR17	ENST00000272644	human	ensembl	74_37	+1	known	missense	c.606	p.Q202H	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230				236	0	0	143	73	33.7963
NCKAP5	0	genome.wustl.edu	37	2	133540880	133540880	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	133540880	133540880	C	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.3504	p.G1168	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				76	0	0	67	38	36.1905
NCKAP5	0	genome.wustl.edu	37	2	133547605	133547605	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	133547605	133547605	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	silent	c.1083	p.L361	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				29	0	0	31	12	27.907
TTN	0	genome.wustl.edu	37	2	179600641	179600641	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	179600641	179600641	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.10800	p.S3600	0.067	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				61	0	0	80	41	33.8843
MARS2	0	genome.wustl.edu	37	2	198570228	198570228	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	198570228	198570228	C	T	SNP	MARS2	ENST00000282276	human	ensembl	74_37	+1	known	silent	c.99	p.S33	0.000	NULL	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626				89	0	0	98	7	6.66667
SPAST	0	genome.wustl.edu	37	2	32289152	32289152	+	Silent	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	32289152	32289152	C	G	SNP	SPAST	ENST00000315285	human	ensembl	74_37	+1	known	silent	c.252	p.R84	1.000	pirsf_Spastin	pfam_ATPase_AAA_core,pfam_MIT,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase,pirsf_Spastin	-	no_errors	SPAST	HGNC	ENSG00000021574				31	0	0	24	23	48.9362
SPAST	0	genome.wustl.edu	37	2	32362007	32362007	+	Silent	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	32362007	32362007	A	G	SNP	SPAST	ENST00000315285	human	ensembl	74_37	+1	known	silent	c.1383	p.L461	0.996	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_Spastin	pfam_ATPase_AAA_core,pfam_MIT,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_MIT,smart_AAA+_ATPase,pirsf_Spastin	-	no_errors	SPAST	HGNC	ENSG00000021574				17	0	0	49	24	32.8767
ANKRD36	0	genome.wustl.edu	37	2	97877478	97877478	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	2	97877478	97877478	G	A	SNP	ANKRD36	ENST00000420699	human	ensembl	74_37	+1	known	missense	c.3469	p.V1157M	0.198	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD36	HGNC	ENSG00000135976				8	0	0	8	8	50
SYNDIG1	0	genome.wustl.edu	37	20	24565546	24565546	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	24565546	24565546	C	T	SNP	SYNDIG1	ENST00000376862	human	ensembl	74_37	+1	known	missense	c.535	p.R179W	0.119	pfam_CD225/Dispanin_fam	pfam_CD225/Dispanin_fam	-	no_errors	SYNDIG1	HGNC	ENSG00000101463				161	1	0.617284	320	34	9.60452
DUSP15	0	genome.wustl.edu	37	20	30449248	30449248	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	30449248	30449248	G	A	SNP	DUSP15	ENST00000339738	human	ensembl	74_37	-1	known	silent	c.666	p.F222	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP	-	no_errors	DUSP15	HGNC	ENSG00000149599				12	0	0	10	4	28.5714
TTLL9	0	genome.wustl.edu	37	20	30486296	30486296	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	30486296	30486296	G	A	SNP	TTLL9	ENST00000375938	human	ensembl	74_37	+1	known	missense	c.134	p.R45Q	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL9	HGNC	ENSG00000131044				69	0	0	143	14	8.9172
LZTS3	0	genome.wustl.edu	37	20	3147537	3147537	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	3147537	3147537	C	G	SNP	LZTS3	ENST00000329152	human	ensembl	74_37	-1	known	missense	c.273	p.K91N	0.999	NULL	NULL	-	no_errors	LZTS3	Uniprot_gn	ENSG00000088899				48	0	0	70	10	12.5
TTI1	0	genome.wustl.edu	37	20	36641604	36641604	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	36641604	36641604	C	A	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.615	p.L205F	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				55	0	0	170	14	7.6087
RBCK1	0	genome.wustl.edu	37	20	407987	407987	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	407987	407987	C	A	SNP	RBCK1	ENST00000356286	human	ensembl	74_37	+1	known	missense	c.1060	p.L354I	1.000	NULL	pfam_Znf_C6HC,pfam_Znf_RanBP2,smart_Znf_RanBP2,smart_Znf_RING,pfscan_Znf_RanBP2,pfscan_Znf_RING,pfscan_Ubiquitin_supergroup	-	no_errors	RBCK1	HGNC	ENSG00000125826				51	0	0	103	16	13.4454
WISP2	0	genome.wustl.edu	37	20	43344038	43344038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	43344038	43344038	G	A	SNP	WISP2	ENST00000190983	human	ensembl	74_37	+1	known	missense	c.7	p.G3S	0.395	NULL	pfam_IGFBP-like,pfam_VWF_C,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_IGFBP-like,smart_VWF_C,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	WISP2	HGNC	ENSG00000064205				17	0	0	26	4	13.3333
KCNS1	0	genome.wustl.edu	37	20	43726377	43726377	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	43726377	43726377	G	C	SNP	KCNS1	ENST00000306117	human	ensembl	74_37	-1	known	missense	c.1036	p.L346V	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6	-	no_errors	KCNS1	HGNC	ENSG00000124134				49	0	0	69	10	12.6582
BCAS4	0	genome.wustl.edu	37	20	49458427	49458427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	49458427	49458427	C	T	SNP	BCAS4	ENST00000358791	human	ensembl	74_37	+1	known	missense	c.479	p.S160F	0.051	NULL	NULL	-	no_errors	BCAS4	HGNC	ENSG00000124243				50	0	0	44	7	13.7255
TSHZ2	0	genome.wustl.edu	37	20	51871044	51871044	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	51871044	51871044	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.1047	p.N349	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				96	0	0	191	59	23.6
RAB22A	0	genome.wustl.edu	37	20	56928380	56928380	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	56928380	56928380	G	A	SNP	RAB22A	ENST00000244040	human	ensembl	74_37	+1	known	missense	c.250	p.V84I	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB22A	HGNC	ENSG00000124209				109	0	0	216	13	5.67686
NCAM2	0	genome.wustl.edu	37	21	22656600	22656600	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	21	22656600	22656600	G	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.217	p.G73C	0.992	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654				43	0	0	57	22	27.8481
KRTAP19-6	0	genome.wustl.edu	37	21	31914074	31914074	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	21	31914074	31914074	A	C	SNP	KRTAP19-6	ENST00000334046	human	ensembl	74_37	-1	known	missense	c.79	p.C27G	0.003	pfam_KRTAP_type6/8/16/19/20	pfam_KRTAP_type6/8/16/19/20	-	no_errors	KRTAP19-6	HGNC	ENSG00000186925				214	0	0	182	53	22.5532
SYNJ1	0	genome.wustl.edu	37	21	34056362	34056362	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	21	34056362	34056362	A	C	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.1303	p.F435V	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				30	0	0	60	31	34.0659
PCBP3	0	genome.wustl.edu	37	21	47361643	47361643	+	RNA	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	21	47361643	47361643	G	A	SNP	PCBP3	ENST00000475402	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PCBP3	HGNC	ENSG00000183570				86	0	0	34	12	26.087
POM121L9P	0	genome.wustl.edu	37	22	24659741	24659741	+	RNA	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	24659741	24659741	G	A	SNP	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262				38	0	0	29	3	9.375
RRP7B	0	genome.wustl.edu	37	22	42969930	42969930	+	RNA	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	42969930	42969930	T	C	SNP	RRP7B	ENST00000458605	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841				383	0	0	257	76	22.8228
CELSR1	0	genome.wustl.edu	37	22	46760030	46760030	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	46760030	46760030	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.8898	p.T2966	0.003	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				143	0	0	90	14	13.4615
BRD1	0	genome.wustl.edu	37	22	50216701	50216701	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	50216701	50216701	G	T	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.1265	p.S422Y	0.977	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				260	0	0	256	48	15.7895
SBF1	0	genome.wustl.edu	37	22	50903026	50903026	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	50903026	50903026	G	A	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	nonsense	c.1573	p.Q525*	1.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241				127	0	0	86	23	21.1009
ADCY5	0	genome.wustl.edu	37	3	123038602	123038602	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	123038602	123038602	G	A	SNP	ADCY5	ENST00000462833	human	ensembl	74_37	-1	known	silent	c.2175	p.D725	0.996	pfam_Adenylate_cyclase-like	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY5	HGNC	ENSG00000173175				60	0	0	54	9	14.2857
ITGB5	0	genome.wustl.edu	37	3	124492671	124492671	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	124492671	124492671	G	C	SNP	ITGB5	ENST00000296181	human	ensembl	74_37	-1	known	missense	c.1782	p.C594W	1.000	pirsf_Integrin_bsu,pfam_EGF_extracell	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_VWF_A,prints_Integrin_bsu	-	no_errors	ITGB5	HGNC	ENSG00000082781				93	0	0	97	18	15.6522
CPNE4	0	genome.wustl.edu	37	3	131404727	131404727	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	131404727	131404727	G	A	SNP	CPNE4	ENST00000502818	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE4	HGNC	ENSG00000196353				35	0	0	60	10	14.2857
DNAJC13	0	genome.wustl.edu	37	3	132166238	132166238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	132166238	132166238	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.218	p.R73H	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				50	0	0	102	18	15
STAG1	0	genome.wustl.edu	37	3	136117672	136117672	+	Splice_Site	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	136117672	136117672	C	G	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	splice_site	c.2197-1	e21-1	1.000	-	-	-	no_errors	STAG1	HGNC	ENSG00000118007				13	0	0	57	6	9.52381
SLC9A9	0	genome.wustl.edu	37	3	143185988	143185988	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	143185988	143185988	C	T	SNP	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	missense	c.1360	p.E454K	0.955	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804				32	0	0	56	14	20
XCR1	0	genome.wustl.edu	37	3	46062775	46062775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	46062775	46062775	C	T	SNP	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	missense	c.665	p.R222H	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578				91	0	0	67	19	22.093
GRM2	0	genome.wustl.edu	37	3	51749182	51749182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	51749182	51749182	C	T	SNP	GRM2	ENST00000395052	human	ensembl	74_37	+1	known	missense	c.1393	p.R465C	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM2	HGNC	ENSG00000164082				66	0	0	52	15	22.3881
FLNB	0	genome.wustl.edu	37	3	58134046	58134046	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	58134046	58134046	C	T	SNP	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	nonsense	c.5842	p.R1948*	1.000	superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				55	0	0	27	5	15.625
TMF1	0	genome.wustl.edu	37	3	69101186	69101186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	69101186	69101186	A	G	SNP	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	missense	c.52	p.S18P	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747				130	0	0	96	24	20
VGLL3	0	genome.wustl.edu	37	3	87018199	87018199	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	87018199	87018199	C	A	SNP	VGLL3	ENST00000398399	human	ensembl	74_37	-1	known	missense	c.478	p.A160S	0.998	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538				162	0	0	238	35	12.8205
COL8A1	0	genome.wustl.edu	37	3	99513916	99513916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	3	99513916	99513916	G	A	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	missense	c.1171	p.E391K	0.987	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				32	0	0	30	12	28.5714
HHIP	0	genome.wustl.edu	37	4	145568092	145568092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	145568092	145568092	C	T	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.265	p.R89C	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161				66	0	0	49	16	24.6154
NR3C2	0	genome.wustl.edu	37	4	149075976	149075976	+	Silent	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	149075976	149075976	T	G	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	silent	c.2103	p.P701	0.111	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623				31	0	0	20	12	37.5
NAF1	0	genome.wustl.edu	37	4	164050124	164050124	+	Silent	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	164050124	164050124	T	G	SNP	NAF1	ENST00000274054	human	ensembl	74_37	-1	known	silent	c.1410	p.P470	0.726	NULL	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_B-barrel	-	no_errors	NAF1	HGNC	ENSG00000145414				8	0	0	8	9	52.9412
TENM3	0	genome.wustl.edu	37	4	183600907	183600907	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	183600907	183600907	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.1415	p.A472V	0.997	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				85	0	0	54	14	20.5882
TENM3	0	genome.wustl.edu	37	4	183721189	183721189	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	183721189	183721189	C	T	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	silent	c.7785	p.D2595	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				18	0	0	14	4	22.2222
ACSL1	0	genome.wustl.edu	37	4	185724503	185724503	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	185724503	185724503	C	A	SNP	ACSL1	ENST00000281455	human	ensembl	74_37	-1	known	missense	c.166	p.D56Y	1.000	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL1	HGNC	ENSG00000151726				31	0	0	25	3	10.7143
TRIML1	0	genome.wustl.edu	37	4	189068199	189068199	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	189068199	189068199	C	G	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	missense	c.1080	p.D360E	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108				104	0	0	103	20	16.2602
KIT	0	genome.wustl.edu	37	4	55594074	55594074	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	55594074	55594074	C	T	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	silent	c.1860	p.V620	0.023	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				54	0	0	55	14	20.2899
GPRIN3	0	genome.wustl.edu	37	4	90170778	90170778	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	90170778	90170778	A	G	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.484	p.S162P	0.000	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477				135	0	0	116	33	22.1477
UNC5C	0	genome.wustl.edu	37	4	96137357	96137357	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	4	96137357	96137357	T	C	SNP	UNC5C	ENST00000453304	human	ensembl	74_37	-1	known	missense	c.1651	p.S551G	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_ZU5,pfam_Death_domain,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5C	HGNC	ENSG00000182168				30	0	0	42	10	19.2308
SLCO4C1	0	genome.wustl.edu	37	5	101585438	101585438	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	101585438	101585438	C	T	SNP	SLCO4C1	ENST00000310954	human	ensembl	74_37	-1	known	silent	c.1524	p.S508	0.006	pfam_OA_transporter,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO4C1	HGNC	ENSG00000173930				42	0	0	75	12	13.7931
GFRA3	0	genome.wustl.edu	37	5	137588726	137588726	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	137588726	137588726	C	G	SNP	GFRA3	ENST00000274721	human	ensembl	74_37	-1	known	missense	c.1134	p.R378S	0.024	NULL	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013				38	0	0	40	10	20
PCDHGB1	0	genome.wustl.edu	37	5	140730590	140730590	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	140730590	140730590	G	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	nonsense	c.763	p.G255*	0.689	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221				146	0	0	111	33	22.9167
ATP10B	0	genome.wustl.edu	37	5	160047768	160047768	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	160047768	160047768	C	A	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.2002	p.V668L	0.000	superfamily_HAD-like_dom	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				161	0	0	83	21	20.1923
CDH12	0	genome.wustl.edu	37	5	21751951	21751951	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	21751951	21751951	T	G	SNP	CDH12	ENST00000382254	human	ensembl	74_37	-1	known	missense	c.2280	p.E760D	0.265	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH12	HGNC	ENSG00000154162				109	0	0	107	42	28.1879
CDH10	0	genome.wustl.edu	37	5	24488107	24488107	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	24488107	24488107	G	T	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.2032	p.P678T	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				69	0	0	115	31	21.2329
CDH9	0	genome.wustl.edu	37	5	26886139	26886139	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	26886139	26886139	T	G	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1566	p.K522N	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				94	0	0	165	53	24.3119
CD180	0	genome.wustl.edu	37	5	66480391	66480391	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	66480391	66480391	C	A	SNP	CD180	ENST00000256447	human	ensembl	74_37	-1	known	nonsense	c.280	p.E94*	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	CD180	HGNC	ENSG00000134061				61	0	0	95	28	22.7642
DMGDH	0	genome.wustl.edu	37	5	78416115	78416115	+	RNA	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	78416115	78416115	T	G	SNP	DMGDH	ENST00000518707	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	DMGDH	HGNC	ENSG00000132837				8	0	0	12	10	45.4545
CMYA5	0	genome.wustl.edu	37	5	79027991	79027991	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	79027991	79027991	G	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.3403	p.V1135M	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				52	0	0	91	23	20.1754
MTX3	0	genome.wustl.edu	37	5	79285047	79285047	+	Silent	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	5	79285047	79285047	T	C	SNP	MTX3	ENST00000512528	human	ensembl	74_37	-1	known	silent	c.249	p.E83	0.421	pirsf_Metaxin	pfam_Sam37/metaxin,superfamily_Glutathione-S-Trfase_C-like,pirsf_Metaxin	-	no_errors	MTX3	HGNC	ENSG00000177034				9	0	0	10	7	41.1765
SYNE1	0	genome.wustl.edu	37	6	152652593	152652593	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	152652593	152652593	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.13227	p.D4409	0.991	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				53	0	0	56	17	23.2877
LPA	0	genome.wustl.edu	37	6	161027567	161027567	+	Silent	SNP	A	A	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	161027567	161027567	A	G	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	silent	c.2727	p.T909	0.000	superfamily_Kringle-like	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670				212	1	0.469484	235	36	13.2841
WDR27	0	genome.wustl.edu	37	6	170064343	170064343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	170064343	170064343	G	A	SNP	WDR27	ENST00000448612	human	ensembl	74_37	-1	known	missense	c.823	p.R275C	0.933	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR27	HGNC	ENSG00000184465				58	0	0	87	19	17.9245
DDR1	0	genome.wustl.edu	37	6	30863265	30863265	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	30863265	30863265	C	T	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.1598	p.A533V	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				348	0	0	234	60	20.4082
HLA-C	0	genome.wustl.edu	37	6	31236950	31236950	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	31236950	31236950	G	C	SNP	HLA-C	ENST00000383329	human	ensembl	74_37	-1	known	missense	c.1115	p.A372G	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-C	HGNC	ENSG00000204525				62	0	0	104	20	16.129
GRM4	0	genome.wustl.edu	37	6	34029747	34029747	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	34029747	34029747	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	silent	c.795	p.F265	0.516	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				133	0	0	98	16	14.0351
TCP11	0	genome.wustl.edu	37	6	35086242	35086242	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	35086242	35086242	A	C	SNP	TCP11	ENST00000311875	human	ensembl	74_37	-1	known	missense	c.1355	p.V452G	0.626	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678				46	0	0	54	20	27.027
F13A1	0	genome.wustl.edu	37	6	6167737	6167737	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	6167737	6167737	G	T	SNP	F13A1	ENST00000264870	human	ensembl	74_37	-1	known	missense	c.1862	p.A621D	0.990	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	F13A1	HGNC	ENSG00000124491				54	0	0	56	12	17.6471
RREB1	0	genome.wustl.edu	37	6	7229901	7229901	+	Silent	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	7229901	7229901	G	C	SNP	RREB1	ENST00000379938	human	ensembl	74_37	+1	known	silent	c.1569	p.T523	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	RREB1	HGNC	ENSG00000124782				306	2	0.649351	157	63	28.6364
GJB7	0	genome.wustl.edu	37	6	87993986	87993986	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	87993986	87993986	T	A	SNP	GJB7	ENST00000296882	human	ensembl	74_37	-1	known	missense	c.645	p.L215F	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJB7	HGNC	ENSG00000164411				49	0	0	98	19	16.2393
CUX1	0	genome.wustl.edu	37	7	101559469	101559469	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	101559469	101559469	C	T	SNP	CUX1	ENST00000360264	human	ensembl	74_37	+1	known	silent	c.138	p.I46	0.936	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_LemA-like_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX1	HGNC	ENSG00000257923				223	0	0	155	40	20.5128
GRM8	0	genome.wustl.edu	37	7	126542634	126542634	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	126542634	126542634	G	C	SNP	GRM8	ENST00000339582	human	ensembl	74_37	-1	known	nonsense	c.1118	p.S373*	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt_4	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM8	HGNC	ENSG00000179603				53	0	0	70	21	23.0769
LRRC4	0	genome.wustl.edu	37	7	127669591	127669591	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	127669591	127669591	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1103	p.R368Q	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				71	0	0	54	17	23.9437
ZNF786	0	genome.wustl.edu	37	7	148768958	148768958	+	Silent	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	148768958	148768958	G	T	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	silent	c.906	p.G302	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362				52	0	0	33	4	10.8108
DNAH11	0	genome.wustl.edu	37	7	21939738	21939738	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	21939738	21939738	G	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.13324	p.G4442C	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				34	0	0	46	61	57.0093
HOXA13	0	genome.wustl.edu	37	7	27238898	27238898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	27238898	27238898	C	T	SNP	HOXA13	ENST00000222753	human	ensembl	74_37	-1	known	missense	c.799	p.E267K	1.000	NULL	pfam_HoxA13_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1	-	no_errors	HOXA13	HGNC	ENSG00000106031				59	0	0	103	12	10.4348
VPS41	0	genome.wustl.edu	37	7	38791835	38791835	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	38791835	38791835	A	T	SNP	VPS41	ENST00000310301	human	ensembl	74_37	-1	known	missense	c.1867	p.Y623N	1.000	pfam_Clathrin_H-chain/VPS_repeat,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41	pfam_Clathrin_H-chain/VPS_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_VPS41,pfscan_Znf_RING	-	no_errors	VPS41	HGNC	ENSG00000006715				100	0	0	392	33	7.76471
VWC2	0	genome.wustl.edu	37	7	49842380	49842380	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	49842380	49842380	C	T	SNP	VWC2	ENST00000340652	human	ensembl	74_37	+1	known	missense	c.770	p.T257M	1.000	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	pfam_VWF_C,smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2	HGNC	ENSG00000188730				92	0	0	116	117	50.2146
ZNF733P	0	genome.wustl.edu	37	7	62752411	62752411	+	RNA	SNP	G	G	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	7	62752411	62752411	G	T	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				24	0	0	74	13	14.9425
CSMD3	0	genome.wustl.edu	37	8	113812420	113812420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	113812420	113812420	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.1943	p.G648E	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				62	0	0	165	11	6.25
TMEM71	0	genome.wustl.edu	37	8	133764099	133764099	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	133764099	133764099	G	A	SNP	TMEM71	ENST00000356838	human	ensembl	74_37	-1	known	silent	c.246	p.C82	0.814	NULL	NULL	-	no_errors	TMEM71	HGNC	ENSG00000165071				127	0	0	303	32	9.55224
KAT6A	0	genome.wustl.edu	37	8	41790659	41790659	+	Silent	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	41790659	41790659	T	G	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	silent	c.5079	p.P1693	0.229	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				49	0	0	27	24	47.0588
SNTG1	0	genome.wustl.edu	37	8	51621478	51621478	+	Silent	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	51621478	51621478	T	C	SNP	SNTG1	ENST00000518864	human	ensembl	74_37	+1	known	silent	c.1224	p.H408	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481				65	0	0	169	40	19.1388
NPBWR1	0	genome.wustl.edu	37	8	53853152	53853152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	53853152	53853152	C	T	SNP	NPBWR1	ENST00000331251	human	ensembl	74_37	+1	known	missense	c.685	p.R229W	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Neuropept_B/W_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_Opioid_rcpt	-	no_errors	NPBWR1	HGNC	ENSG00000183729				38	0	0	24	14	36.8421
MSC	0	genome.wustl.edu	37	8	72755963	72755963	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	72755963	72755963	G	C	SNP	MSC	ENST00000325509	human	ensembl	74_37	-1	known	missense	c.451	p.L151V	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MSC	HGNC	ENSG00000178860				136	0	0	197	20	9.21659
SLC26A7	0	genome.wustl.edu	37	8	92364079	92364079	+	Silent	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	8	92364079	92364079	C	A	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	silent	c.1182	p.I394	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				100	0	0	284	29	9.26518
COL27A1	0	genome.wustl.edu	37	9	116982078	116982078	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	9	116982078	116982078	C	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.2375	p.P792H	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				99	0	0	125	17	11.9718
TNC	0	genome.wustl.edu	37	9	117848440	117848440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	9	117848440	117848440	C	T	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.1570	p.G524S	1.000	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				127	0	0	71	25	26.0417
DAB2IP	0	genome.wustl.edu	37	9	124329506	124329506	+	Silent	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	9	124329506	124329506	C	T	SNP	DAB2IP	ENST00000259371	human	ensembl	74_37	+1	known	silent	c.39	p.Y13	1.000	NULL	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				246	0	0	166	42	20.1923
SPATA31A6	0	genome.wustl.edu	37	9	43624824	43624824	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	9	43624824	43624824	T	G	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.3863	p.K1288T	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				120	0	0	90	38	29.6875
DRP2	0	genome.wustl.edu	37	X	100513426	100513426	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	100513426	100513426	G	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.2519	p.R840H	0.951	pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				11	0	0	6	8	57.1429
HTR2C	0	genome.wustl.edu	37	X	113965892	113965892	+	Silent	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	113965892	113965892	C	A	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	silent	c.225	p.I75	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				48	0	0	105	33	23.913
BEND2	0	genome.wustl.edu	37	X	18192243	18192243	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	18192243	18192243	C	A	SNP	BEND2	ENST00000380033	human	ensembl	74_37	-1	known	nonsense	c.1888	p.E630*	0.005	NULL	pfam_BEN_domain	-	no_errors	BEND2	HGNC	ENSG00000177324				29	0	0	69	38	35.514
TFE3	0	genome.wustl.edu	37	X	48887694	48887694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	48887694	48887694	C	T	SNP	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	missense	c.1703	p.S568N	1.000	pfam_bHLH_ZIP_TF_MiT/TFE	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFE3	HGNC	ENSG00000068323				28	0	0	28	19	40.4255
HUWE1	0	genome.wustl.edu	37	X	53590779	53590779	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	53590779	53590779	C	T	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.7033	p.E2345K	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				8	0	0	29	17	36.9565
BRWD3	0	genome.wustl.edu	37	X	79978259	79978259	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	79978259	79978259	C	T	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1678	p.D560N	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288				25	0	0	96	10	9.43396
ZNF711	0	genome.wustl.edu	37	X	84526509	84526509	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	84526509	84526509	T	C	SNP	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	missense	c.1985	p.F662S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				27	0	0	55	13	19.1176
PCDH19	0	genome.wustl.edu	37	X	99662933	99662933	+	Silent	SNP	G	G	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	X	99662933	99662933	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	silent	c.663	p.T221	0.977	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				146	0	0	114	46	28.75
B3GALNT2	0	genome.wustl.edu	37	1	235613601	235613603	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	1	235613601	235613603	GAG	-	DEL	B3GALNT2	ENST00000366600	human	ensembl	74_37	-1	known	in_frame_del	c.1423_1421	p.P474in_frame_del	1.000:0.126:1.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALNT2	HGNC	ENSG00000162885				69	0	0	142	16	10.1266
OR5I1	0	genome.wustl.edu	37	11	55703337	55703338	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	55703337	55703338	-	A	INS	OR5I1	ENST00000301532	human	ensembl	74_37	-1	known	frame_shift_ins	c.540_539	p.C181fs	1.000:1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5I1	HGNC	ENSG00000167825				29	0	0	75	13	14.7727
MAP6	0	genome.wustl.edu	37	11	75319364	75319365	+	Frame_Shift_Ins	INS	-	-	TTCC			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	11	75319364	75319365	-	TTCC	INS	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	frame_shift_ins	c.909_908	p.N303fs	1.000:1.000	pfam_MAP6/FAM154	pfam_MAP6/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533				45	0	0	46	6	11.5385
WDR73	0	genome.wustl.edu	37	15	85186877	85186894	+	In_Frame_Del	DEL	CTTGGCTCCGTGTTCCAT	CTTGGCTCCGTGTTCCAT	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	CTTGGCTCCGTGTTCCAT	CTTGGCTCCGTGTTCCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	85186877	85186894	CTTGGCTCCGTGTTCCAT	-	DEL	WDR73	ENST00000434634	human	ensembl	74_37	-1	known	in_frame_del	c.961_944	p.DGTRSQ315in_frame_del	0.001:0.001:0.001:0.001:0.001:0.001:0.002:0.005:0.007:0.007:0.010:0.012:0.012:0.011:0.010:0.009:0.007:0.005	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR73	HGNC	ENSG00000177082				20	0	0	23	15	39.4737
WDR73	0	genome.wustl.edu	37	15	85186894	85186894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	85186894	85186894	T	-	DEL	WDR73	ENST00000434634	human	ensembl	74_37	-1	known	frame_shift_del	c.944	p.D315fs	0.005	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR73	HGNC	ENSG00000177082				20	0	0	23	15	39.4737
AKAP13	0	genome.wustl.edu	37	15	86262343	86262343	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	15	86262343	86262343	T	-	DEL	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	frame_shift_del	c.6050	p.L2017fs	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				49	0	0	107	13	10.8333
CES1	0	genome.wustl.edu	37	16	55853479	55853479	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	55853479	55853479	C	-	DEL	CES1	ENST00000360526	human	ensembl	74_37	-1	known	frame_shift_del	c.874	p.E292fs	0.996	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				232	0	0	493	36	6.80529
NLRC5	0	genome.wustl.edu	37	16	57081493	57081494	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	16	57081493	57081494	-	T	INS	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	frame_shift_ins	c.3375_3376	p.R1125fs	0.000:0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853				37	0	0	41	5	10.8696
DIDO1	0	genome.wustl.edu	37	20	61512380	61512381	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	20	61512380	61512381	-	G	INS	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_ins	c.4928_4927	p.R1643fs	0.000:0.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				49	0	0	59	7	10.6061
TOP3B	0	genome.wustl.edu	37	22	22323012	22323012	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	22	22323012	22323012	G	-	DEL	TOP3B	ENST00000357179	human	ensembl	74_37	-1	known	frame_shift_del	c.717	p.Y240fs	0.891	pfam_Topo_IA_cen,superfamily_Topo_IA_core_domain,smart_Topo_IA_2	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC	ENSG00000100038				88	0	0	145	33	18.5393
PBX2	0	genome.wustl.edu	37	6	32156075	32156075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	32156075	32156075	T	-	DEL	PBX2	ENST00000375050	human	ensembl	74_37	-1	known	frame_shift_del	c.502	p.I168fs	1.000	pfam_PBX	pfam_PBX,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	PBX2	HGNC	ENSG00000204304				131	0	0	162	33	16.9231
BMP6	0	genome.wustl.edu	37	6	7727523	7727525	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	6	7727523	7727525	AGC	-	DEL	BMP6	ENST00000283147	human	ensembl	74_37	+1	known	in_frame_del	c.335_337	p.Q116in_frame_del	0.925:0.919:0.908	pfam_TGF-b_N	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP6	HGNC	ENSG00000153162				33	0	0	25	2	7.40741
SVEP1	0	genome.wustl.edu	37	9	113233694	113233694	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4CS-01A-11D-A24D-08	TCGA-BR-A4CS-10A-01D-A24F-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90b5d039-432a-461c-9ad4-bc91e5beb02b	b6b05f89-ae1b-4955-bf76-d7928a38844f	9	113233694	113233694	T	-	DEL	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	frame_shift_del	c.2948	p.K983fs	1.000	NULL	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				29	0	0	41	17	29.3103
