Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TTF2	0	genome.wustl.edu	37	1	117618069	117618069	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	117618069	117618069	G	T	SNP	TTF2	ENST00000369466	human	ensembl	74_37	+1	known	missense	c.863	p.W288L	0.002	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	TTF2	HGNC	ENSG00000116830				99	0	0	71	4	5.33333
IQGAP3	0	genome.wustl.edu	37	1	156510514	156510514	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	156510514	156510514	G	A	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	missense	c.2725	p.R909W	1.000	NULL	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				60	0	0	56	4	6.66667
OR10K1	0	genome.wustl.edu	37	1	158435617	158435617	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	158435617	158435617	A	C	SNP	OR10K1	ENST00000289451	human	ensembl	74_37	+1	known	missense	c.266	p.K89T	0.737	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K1	HGNC	ENSG00000173285				160	0	0	161	9	5.29412
SPTA1	0	genome.wustl.edu	37	1	158622374	158622374	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	158622374	158622374	T	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.3258	p.L1086F	0.998	smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				90	0	0	97	6	5.82524
REN	0	genome.wustl.edu	37	1	204124212	204124212	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	204124212	204124212	A	T	SNP	REN	ENST00000272190	human	ensembl	74_37	-1	known	missense	c.1153	p.F385I	0.999	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	REN	HGNC	ENSG00000143839				76	0	0	51	6	10.5263
MMP1	0	genome.wustl.edu	37	11	102666013	102666013	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	11	102666013	102666013	T	G	SNP	MMP1	ENST00000315274	human	ensembl	74_37	-1	known	missense	c.791	p.Q264P	0.000	pirsf_Pept_M10A_Metazoans	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP1	HGNC	ENSG00000196611				60	0	0	53	3	5.35714
TECTA	0	genome.wustl.edu	37	11	120996063	120996063	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	11	120996063	120996063	A	C	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.1256	p.K419T	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				210	0	0	198	11	5.26316
MUC5B	0	genome.wustl.edu	37	11	1253942	1253942	+	Silent	SNP	T	T	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	11	1253942	1253942	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.2016	p.Y672	0.726	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				18	0	0	14	9	39.1304
MUC5B	0	genome.wustl.edu	37	11	1253969	1253969	+	Silent	SNP	A	A	G			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	11	1253969	1253969	A	G	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.2043	p.V681	0.952	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				22	0	0	14	6	30
SMPD1	0	genome.wustl.edu	37	11	6411930	6411930	+	Silent	SNP	C	C	G			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	11	6411930	6411930	C	G	SNP	SMPD1	ENST00000342245	human	ensembl	74_37	+1	known	silent	c.102	p.G34	0.000	pirsf_Sphingomy_PDE	pfam_PEstase_dom,superfamily_Saposin-like,smart_SaposinB,pirsf_Sphingomy_PDE,pfscan_SaposinB	-	no_errors	SMPD1	HGNC	ENSG00000166311				36	0	0	32	3	8.57143
KCNA5	0	genome.wustl.edu	37	12	5153813	5153813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	12	5153813	5153813	G	A	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.500	p.R167H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037				89	0	0	83	5	5.68182
PCK2	0	genome.wustl.edu	37	14	24566314	24566314	+	Silent	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	14	24566314	24566314	C	T	SNP	PCK2	ENST00000216780	human	ensembl	74_37	+1	known	silent	c.243	p.G81	0.686	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	pfam_PEP_carboxykinase_GTP,superfamily_PEP_carboxykinase_N,pirsf_PEP_carboxykinase_GTP	-	no_errors	PCK2	HGNC	ENSG00000100889				100	0	0	78	6	7.14286
RRN3P1	0	genome.wustl.edu	37	16	21817457	21817457	+	RNA	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	16	21817457	21817457	G	A	SNP	RRN3P1	ENST00000546471	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				24	0	0	18	4	18.1818
PLEKHG4	0	genome.wustl.edu	37	16	67321852	67321852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	16	67321852	67321852	G	A	SNP	PLEKHG4	ENST00000360461	human	ensembl	74_37	+1	known	missense	c.3155	p.R1052Q	0.996	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155				99	0	0	95	5	5
CDH1	0	genome.wustl.edu	37	16	68844172	68844172	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	16	68844172	68844172	G	T	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.760	p.D254Y	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				161	0	0	144	11	7.09677
GUCY2D	0	genome.wustl.edu	37	17	7907247	7907247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	17	7907247	7907247	G	A	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	missense	c.799	p.G267S	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518				132	0	0	94	5	5.05051
ZNF254	0	genome.wustl.edu	37	19	24309936	24309936	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	19	24309936	24309936	C	A	SNP	ZNF254	ENST00000357002	human	ensembl	74_37	+1	known	nonsense	c.1134	p.Y378*	0.006	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF254	HGNC	ENSG00000213096				39	0	0	36	3	7.69231
CATSPERG	0	genome.wustl.edu	37	19	38851392	38851392	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	19	38851392	38851392	C	G	SNP	CATSPERG	ENST00000409235	human	ensembl	74_37	+1	known	missense	c.1789	p.Q597E	0.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338				47	0	0	36	3	7.69231
DYNC1I2	0	genome.wustl.edu	37	2	172585300	172585300	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	2	172585300	172585300	T	A	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	missense	c.1331	p.V444D	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				26	0	0	17	2	10.5263
DYNC1I2	0	genome.wustl.edu	37	2	172585301	172585301	+	Silent	SNP	C	C	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	2	172585301	172585301	C	A	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	silent	c.1332	p.V444	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				25	0	0	17	2	10.5263
TTN	0	genome.wustl.edu	37	2	179613105	179613105	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	2	179613105	179613105	T	A	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.14022	p.Q4674H	0.026	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				126	0	0	115	8	6.50407
PSMF1	0	genome.wustl.edu	37	20	1099450	1099450	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	20	1099450	1099450	G	T	SNP	PSMF1	ENST00000333082	human	ensembl	74_37	+1	known	missense	c.34	p.A12S	0.993	pfam_FP_dom	pfam_FP_dom,pfam_PI31_Prot_Reg	-	no_errors	PSMF1	HGNC	ENSG00000125818				44	0	0	52	3	5.45455
RHOA	0	genome.wustl.edu	37	3	49405959	49405959	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	3	49405959	49405959	G	T	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.179	p.T60K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				111	0	0	93	12	11.4286
SLIT2	0	genome.wustl.edu	37	4	20618693	20618693	+	Silent	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	4	20618693	20618693	C	T	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	silent	c.4008	p.C1336	1.000	smart_EG-like_dom,smart_EGF-like_Ca-bd_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				65	0	0	64	4	5.88235
KIT	0	genome.wustl.edu	37	4	55561758	55561758	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	4	55561758	55561758	G	A	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.148	p.V50M	0.001	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,smart_Ig_sub	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404				61	0	0	51	3	5.55556
PCDHA3	0	genome.wustl.edu	37	5	140182645	140182645	+	Silent	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	5	140182645	140182645	G	A	SNP	PCDHA3	ENST00000522353	human	ensembl	74_37	+1	known	silent	c.1863	p.P621	0.327	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA3	HGNC	ENSG00000255408				94	0	0	93	7	7
KIF4B	0	genome.wustl.edu	37	5	154395689	154395689	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	5	154395689	154395689	C	T	SNP	KIF4B	ENST00000435029	human	ensembl	74_37	+1	known	missense	c.2270	p.T757I	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650				47	0	0	47	3	6
TCP10	0	genome.wustl.edu	37	6	167789493	167789493	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	6	167789493	167789493	T	C	SNP	TCP10	ENST00000397829	human	ensembl	74_37	-1	known	missense	c.649	p.T217A	0.000	NULL	NULL	-	no_errors	TCP10	HGNC	ENSG00000203690				48	0	0	35	9	20.4545
DNAH11	0	genome.wustl.edu	37	7	21908603	21908603	+	Silent	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	7	21908603	21908603	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.11982	p.I3994	0.783	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				33	0	0	36	3	7.69231
NME8	0	genome.wustl.edu	37	7	37927910	37927910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	7	37927910	37927910	C	T	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.1279	p.P427S	0.878	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				78	0	0	64	4	5.88235
POM121L12	0	genome.wustl.edu	37	7	53104090	53104090	+	Silent	SNP	C	C	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	7	53104090	53104090	C	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	silent	c.726	p.P242	0.001	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				94	0	0	64	7	9.85915
HAS2	0	genome.wustl.edu	37	8	122627197	122627197	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	8	122627197	122627197	G	A	SNP	HAS2	ENST00000303924	human	ensembl	74_37	-1	known	nonsense	c.811	p.Q271*	1.000	pfam_Chitin_synth_fng	pfam_Chitin_synth_fng	-	no_errors	HAS2	HGNC	ENSG00000170961				114	0	0	98	8	7.54717
CA8	0	genome.wustl.edu	37	8	61192405	61192405	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	8	61192405	61192405	A	T	SNP	CA8	ENST00000317995	human	ensembl	74_37	-1	known	missense	c.135	p.N45K	0.994	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA8	HGNC	ENSG00000178538				40	0	0	32	3	8.57143
BRINP1	0	genome.wustl.edu	37	9	121930039	121930039	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	9	121930039	121930039	A	C	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1609	p.F537V	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				54	0	0	57	5	8.06452
CELP	0	genome.wustl.edu	37	9	135962189	135962189	+	RNA	SNP	C	C	G			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	9	135962189	135962189	C	G	SNP	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CELP	HGNC	ENSG00000170827				18	0	0	19	5	20.8333
DDX53	0	genome.wustl.edu	37	X	23019989	23019989	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	X	23019989	23019989	G	C	SNP	DDX53	ENST00000327968	human	ensembl	74_37	+1	known	missense	c.1815	p.K605N	0.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX53	HGNC	ENSG00000184735				41	0	0	37	4	9.7561
GNL3L	0	genome.wustl.edu	37	X	54578096	54578096	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	X	54578096	54578096	G	A	SNP	GNL3L	ENST00000336470	human	ensembl	74_37	+1	known	missense	c.959	p.R320H	1.000	pfam_GTP_binding_domain	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	GNL3L	HGNC	ENSG00000130119				25	0	0	30	4	11.7647
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037835	10037835	+	RNA	SNP	T	T	C			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	Y	10037835	10037835	T	C	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				28	0	0	21	3	12.5
ARSEP1	0	genome.wustl.edu	37	Y	14467978	14467978	+	RNA	SNP	C	C	T			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	Y	14467978	14467978	C	T	SNP	ARSEP1	ENST00000430152	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	ARSEP1	HGNC	ENSG00000224060				20	0	0	22	2	8.33333
SYCP1	0	genome.wustl.edu	37	1	115469134	115469134	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	115469134	115469134	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.1876	p.G629fs	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				29	0	0	23	2	8
NDUFS2	0	genome.wustl.edu	37	1	161184059	161184060	+	RNA	INS	-	-	TG			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	1	161184059	161184060	-	TG	INS	NDUFS2	ENST00000465923	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.811:0.953	-	-	-	no_errors	NDUFS2	HGNC	ENSG00000158864				15	0	0	12	4	25
CUL4B	0	genome.wustl.edu	37	X	119694117	119694119	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-A4IV-01A-31D-A25D-08	TCGA-BR-A4IV-10A-01D-A25E-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a6f063a8-b76c-4c9b-b9fa-aafd37feb4e5	ad1fb261-9956-4218-91ec-10b02a3f9ba5	X	119694117	119694119	GAG	-	DEL	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	in_frame_del	c.431_429	p.S146in_frame_del	0.999:1.000:1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				48	0	0	52	5	8.77193
