Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RORC	0	genome.wustl.edu	37	1	151785769	151785769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	151785769	151785769	G	A	SNP	RORC	ENST00000392697	human	ensembl	74_37	-1	known	missense	c.1282	p.R428C	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORC	HGNC	ENSG00000143365				316	0	0	255	51	16.6667
GBA	0	genome.wustl.edu	37	1	155209829	155209829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	155209829	155209829	G	A	SNP	GBA	ENST00000327247	human	ensembl	74_37	-1	known	missense	c.155	p.S52L	0.989	pfam_Glyco_hydro_30,prints_Glyco_hydro_30	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628				51	0	0	36	8	18.1818
RSC1A1	0	genome.wustl.edu	37	1	15987376	15987376	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	15987376	15987376	G	C	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	missense	c.1013	p.C338S	0.179	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				51	0	0	50	3	5.66038
PAPPA2	0	genome.wustl.edu	37	1	176525566	176525566	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	176525566	176525566	G	C	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.108	p.E36D	0.088	NULL	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				139	0	0	101	8	7.33945
HMCN1	0	genome.wustl.edu	37	1	186099205	186099205	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	186099205	186099205	A	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	nonsense	c.13012	p.K4338*	1.000	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				78	0	0	59	4	6.34921
TROVE2	0	genome.wustl.edu	37	1	193038590	193038590	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	193038590	193038590	A	C	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	missense	c.406	p.K136Q	1.000	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747				93	0	0	54	15	21.7391
ENSG00000226862	0	genome.wustl.edu	37	1	202573452	202573452	+	RNA	SNP	T	T	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	202573452	202573452	T	G	SNP	ENSG00000226862	ENST00000428573	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-569A11.1	Clone_based_vega_gene	ENSG00000226862				33	0	0	40	7	14.8936
RABIF	0	genome.wustl.edu	37	1	202850310	202850310	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	202850310	202850310	G	A	SNP	RABIF	ENST00000367262	human	ensembl	74_37	-1	known	silent	c.168	p.D56	0.000	pfam_Mss4,superfamily_Mss4-like	pfam_Mss4,superfamily_Mss4-like	-	no_errors	RABIF	HGNC	ENSG00000183155				59	0	0	43	11	20.3704
KCTD3	0	genome.wustl.edu	37	1	215793440	215793440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	215793440	215793440	C	T	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.1928	p.T643I	0.995	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				54	0	0	54	4	6.89655
RAB3GAP2	0	genome.wustl.edu	37	1	220335565	220335565	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	220335565	220335565	G	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	74_37	-1	known	missense	c.3200	p.S1067C	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873				107	0	0	87	10	10.3093
TRIM17	0	genome.wustl.edu	37	1	228598776	228598776	+	Silent	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	228598776	228598776	C	T	SNP	TRIM17	ENST00000295033	human	ensembl	74_37	-1	known	silent	c.627	p.T209	0.550	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM17	HGNC	ENSG00000162931				111	0	0	66	7	9.58904
TMEM50A	0	genome.wustl.edu	37	1	25687266	25687266	+	RNA	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	25687266	25687266	C	T	SNP	TMEM50A	ENST00000480937	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.178	-	-	-	no_errors	TMEM50A	HGNC	ENSG00000183726				33	0	0	24	3	11.1111
PTAFR	0	genome.wustl.edu	37	1	28477276	28477276	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	28477276	28477276	G	T	SNP	PTAFR	ENST00000305392	human	ensembl	74_37	-1	known	missense	c.257	p.P86H	0.051	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_PAF_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_PAF_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTAFR	HGNC	ENSG00000169403				89	0	0	74	18	19.5652
CHD5	0	genome.wustl.edu	37	1	6202385	6202385	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	1	6202385	6202385	G	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.2239	p.H747N	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				70	0	0	49	10	16.9492
PPRC1	0	genome.wustl.edu	37	10	103904794	103904794	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	103904794	103904794	A	G	SNP	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	missense	c.3626	p.Q1209R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840				73	0	0	51	11	17.7419
HSPA12A	0	genome.wustl.edu	37	10	118443393	118443393	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	118443393	118443393	C	G	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.744	p.K248N	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				62	0	0	34	9	20.9302
MMP21	0	genome.wustl.edu	37	10	127461231	127461231	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	127461231	127461231	G	A	SNP	MMP21	ENST00000368808	human	ensembl	74_37	-1	known	silent	c.786	p.D262	0.563	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP21	HGNC	ENSG00000154485				105	0	0	61	14	18.6667
ZMYND11	0	genome.wustl.edu	37	10	267156	267156	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	267156	267156	G	C	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.298	p.D100H	1.000	superfamily_Znf_FYVE_PHD,pfscan_Znf_PHD-finger	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171				156	0	0	148	27	15.4286
AGAP8	0	genome.wustl.edu	37	10	51225645	51225645	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	51225645	51225645	G	A	SNP	AGAP8	ENST00000425119	human	ensembl	74_37	-1	known	missense	c.1337	p.S446L	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP8	HGNC	ENSG00000174194				38	0	0	26	7	21.2121
GDI2	0	genome.wustl.edu	37	10	5808574	5808574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	5808574	5808574	G	A	SNP	GDI2	ENST00000380132	human	ensembl	74_37	-1	known	missense	c.1031	p.A344V	1.000	pfam_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,prints_RabGDI,prints_GDP_dissociation_inhibitor	-	no_errors	GDI2	HGNC	ENSG00000057608				61	0	0	45	3	6.25
SFTPA2	0	genome.wustl.edu	37	10	81317845	81317845	+	Silent	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	10	81317845	81317845	G	C	SNP	SFTPA2	ENST00000372325	human	ensembl	74_37	-1	known	silent	c.333	p.L111	0.781	NULL	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPA2	HGNC	ENSG00000185303				292	0	0	290	19	6.14887
ATF4P4	0	genome.wustl.edu	37	11	113659993	113659993	+	RNA	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	113659993	113659993	A	C	SNP	ATF4P4	ENST00000393544	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	ATF4P4	HGNC	ENSG00000256167				29	0	0	28	3	9.67742
DSCAML1	0	genome.wustl.edu	37	11	117352699	117352699	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	117352699	117352699	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	silent	c.2718	p.D906	0.483	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				94	0	0	61	8	11.5942
CD3E	0	genome.wustl.edu	37	11	118178016	118178016	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	118178016	118178016	G	A	SNP	CD3E	ENST00000361763	human	ensembl	74_37	+1	known	silent	c.63	p.G21	0.003	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3E	HGNC	ENSG00000198851				47	0	0	41	3	6.81818
TH	0	genome.wustl.edu	37	11	2189141	2189141	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	2189141	2189141	C	T	SNP	TH	ENST00000381178	human	ensembl	74_37	-1	known	missense	c.692	p.R231H	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_Tyrosine_hydroxylase_CS,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Tyr_3_mOase	-	no_errors	TH	HGNC	ENSG00000180176				27	0	0	25	3	10.7143
CHRM4	0	genome.wustl.edu	37	11	46407613	46407613	+	Silent	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	46407613	46407613	C	T	SNP	CHRM4	ENST00000433765	human	ensembl	74_37	-1	known	silent	c.495	p.A165	0.123	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn,prints_Musac_Ach_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720				21	0	0	22	6	21.4286
MADD	0	genome.wustl.edu	37	11	47296606	47296606	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	47296606	47296606	C	G	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.555	p.F185L	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				82	0	0	59	13	18.0556
CELF1	0	genome.wustl.edu	37	11	47494716	47494716	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	47494716	47494716	C	A	SNP	CELF1	ENST00000532048	human	ensembl	74_37	-1	known	missense	c.1335	p.Q445H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187				67	0	0	52	4	7.14286
OR5T1	0	genome.wustl.edu	37	11	56043183	56043183	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	56043183	56043183	G	A	SNP	OR5T1	ENST00000313033	human	ensembl	74_37	+1	known	missense	c.69	p.M23I	0.004	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T1	HGNC	ENSG00000181698				132	0	0	135	9	6.25
CNGA4	0	genome.wustl.edu	37	11	6265493	6265493	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	6265493	6265493	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.1582	p.R528C	1.000	NULL	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				89	0	0	45	22	32.8358
SNX32	0	genome.wustl.edu	37	11	65620233	65620233	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	65620233	65620233	G	C	SNP	SNX32	ENST00000308342	human	ensembl	74_37	+1	known	missense	c.1045	p.E349Q	0.999	pfam_Vps5_C,pirsf_Snx5_Snx6	pfam_Vps5_C,pfam_Phox,superfamily_Phox,pirsf_Snx5_Snx6,pfscan_Phox	-	no_errors	SNX32	HGNC	ENSG00000172803				34	0	0	32	4	11.1111
RAB1B	0	genome.wustl.edu	37	11	66039636	66039636	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	66039636	66039636	G	A	SNP	RAB1B	ENST00000311481	human	ensembl	74_37	+1	known	silent	c.96	p.T32	0.143	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB1B	HGNC	ENSG00000174903				245	1	0.406504	222	30	11.9048
RBM14	0	genome.wustl.edu	37	11	66384208	66384208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	66384208	66384208	G	A	SNP	RBM14	ENST00000310137	human	ensembl	74_37	+1	known	missense	c.17	p.G6D	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM14	HGNC	ENSG00000239306				54	0	0	38	9	19.1489
PDE2A	0	genome.wustl.edu	37	11	72299876	72299876	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	72299876	72299876	T	A	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	missense	c.1022	p.D341V	0.998	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				145	0	0	94	13	12.1495
P2RY2	0	genome.wustl.edu	37	11	72945522	72945522	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	72945522	72945522	C	A	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	nonsense	c.318	p.C106*	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591				117	0	0	88	40	31.25
ARHGEF17	0	genome.wustl.edu	37	11	73021583	73021583	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	73021583	73021583	G	T	SNP	ARHGEF17	ENST00000263674	human	ensembl	74_37	+1	known	nonsense	c.1900	p.E634*	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,superfamily_Vinculin/catenin,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF17	HGNC	ENSG00000110237				68	0	0	51	8	13.5593
MYO7A	0	genome.wustl.edu	37	11	76853839	76853839	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	76853839	76853839	C	A	SNP	MYO7A	ENST00000409709	human	ensembl	74_37	+1	known	missense	c.103	p.Q35K	1.000	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_FERM_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474				14	0	0	20	3	13.0435
OVCH2	0	genome.wustl.edu	37	11	7722879	7722879	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	11	7722879	7722879	C	T	SNP	OVCH2	ENST00000454689	human	ensembl	74_37	-1	known	missense	c.703	p.A235T	1.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,pfam_CUB_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH2	HGNC	ENSG00000183378				30	0	0	32	6	15.7895
BTBD11	0	genome.wustl.edu	37	12	108029147	108029147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	108029147	108029147	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.2717	p.R906Q	1.000	superfamily_BTB/POZ_fold	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				101	0	0	49	11	18.3333
MLEC	0	genome.wustl.edu	37	12	121125252	121125252	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	121125252	121125252	G	A	SNP	MLEC	ENST00000228506	human	ensembl	74_37	+1	known	silent	c.153	p.A51	0.773	pfam_Malectin	pfam_Malectin	-	no_errors	MLEC	HGNC	ENSG00000110917				67	0	0	36	5	12.1951
BICD1	0	genome.wustl.edu	37	12	32491848	32491848	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	32491848	32491848	C	G	SNP	BICD1	ENST00000281474	human	ensembl	74_37	+1	known	missense	c.2699	p.S900C	1.000	NULL	pfam_Bicaudal-D_microtubule-assoc,superfamily_SPOC_like_C_dom	-	no_errors	BICD1	HGNC	ENSG00000151746				117	0	0	89	11	11
CPNE8	0	genome.wustl.edu	37	12	39047739	39047739	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	39047739	39047739	G	T	SNP	CPNE8	ENST00000331366	human	ensembl	74_37	-1	known	nonsense	c.1640	p.S547*	0.001	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117				61	0	0	40	8	16.6667
COL2A1	0	genome.wustl.edu	37	12	48368564	48368564	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	48368564	48368564	C	A	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	missense	c.3968	p.C1323F	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				156	0	0	91	16	14.9533
DNAJC22	0	genome.wustl.edu	37	12	49743369	49743369	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	49743369	49743369	G	A	SNP	DNAJC22	ENST00000395069	human	ensembl	74_37	+1	known	silent	c.714	p.L238	1.000	NULL	pfam_DnaJ_domain,pfam_TM2,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC22	HGNC	ENSG00000178401				198	1	0.502513	147	31	17.4157
KIF5A	0	genome.wustl.edu	37	12	57963828	57963828	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	57963828	57963828	G	A	SNP	KIF5A	ENST00000455537	human	ensembl	74_37	+1	known	silent	c.1176	p.E392	0.643	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5A	HGNC	ENSG00000155980				38	0	0	33	3	8.33333
TMEM5	0	genome.wustl.edu	37	12	64202853	64202853	+	Nonsense_Mutation	SNP	T	T	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	64202853	64202853	T	G	SNP	TMEM5	ENST00000261234	human	ensembl	74_37	+1	known	nonsense	c.1313	p.L438*	1.000	NULL	pfam_Exostosin	-	no_errors	TMEM5	HGNC	ENSG00000118600				34	0	0	19	3	13.6364
C3AR1	0	genome.wustl.edu	37	12	8211383	8211383	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	8211383	8211383	G	T	SNP	C3AR1	ENST00000307637	human	ensembl	74_37	-1	known	missense	c.1399	p.H467N	0.760	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Anaphtx_C3AR1,prints_GPCR_Rhodpsn,prints_Anphylx_rcpt,prints_Formyl_pep_rcpt,prints_Anaphtx_C5AR1/C5AR2	-	no_errors	C3AR1	HGNC	ENSG00000171860				155	0	0	129	20	13.4228
TPTE2	0	genome.wustl.edu	37	13	19999107	19999107	+	Silent	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	13	19999107	19999107	C	G	SNP	TPTE2	ENST00000382977	human	ensembl	74_37	-1	known	silent	c.1446	p.T482	0.655	pfam_Tensin_phosphatase_C2-dom,superfamily_C2_dom,pfscan_Tensin_phosphatase_C2-dom	pfam_Tensin_phosphatase_C2-dom,pfam_Ion_trans_dom,pfam_Dual-sp_phosphatase_cat-dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE2	HGNC	ENSG00000132958				25	0	0	19	3	13.6364
USP12	0	genome.wustl.edu	37	13	27645260	27645260	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	13	27645260	27645260	G	A	SNP	USP12	ENST00000282344	human	ensembl	74_37	-1	known	missense	c.959	p.A320V	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP12	HGNC	ENSG00000152484				51	0	0	42	8	16
LCP1	0	genome.wustl.edu	37	13	46725141	46725141	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	13	46725141	46725141	A	T	SNP	LCP1	ENST00000323076	human	ensembl	74_37	-1	known	missense	c.812	p.L271Q	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	LCP1	HGNC	ENSG00000136167				94	0	0	76	22	22.449
SLC25A47	0	genome.wustl.edu	37	14	100793683	100793683	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	14	100793683	100793683	G	A	SNP	SLC25A47	ENST00000361529	human	ensembl	74_37	+1	known	silent	c.303	p.S101	0.369	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A47	HGNC	ENSG00000140107				102	0	0	56	8	12.5
PTGDR	0	genome.wustl.edu	37	14	52735280	52735280	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	14	52735280	52735280	G	A	SNP	PTGDR	ENST00000306051	human	ensembl	74_37	+1	known	missense	c.748	p.G250R	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Pglndn_D_rcpt,prints_Prostanoid_rcpt	-	no_errors	PTGDR	HGNC	ENSG00000168229				136	0	0	98	23	19.0083
HERC1	0	genome.wustl.edu	37	15	63926111	63926111	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	15	63926111	63926111	G	C	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.12629	p.A4210G	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				27	0	0	24	2	7.69231
SEMA7A	0	genome.wustl.edu	37	15	74708915	74708915	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	15	74708915	74708915	C	T	SNP	SEMA7A	ENST00000261918	human	ensembl	74_37	-1	known	splice_site	c.801+1	e7+1	1.000	-	-	-	no_errors	SEMA7A	HGNC	ENSG00000138623				41	0	0	43	4	8.51064
ADAMTS7	0	genome.wustl.edu	37	15	79080681	79080681	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	15	79080681	79080681	C	G	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.1214	p.C405S	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				161	0	0	114	20	14.9254
ADAMTS7	0	genome.wustl.edu	37	15	79083543	79083543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	15	79083543	79083543	G	A	SNP	ADAMTS7	ENST00000388820	human	ensembl	74_37	-1	known	missense	c.842	p.P281L	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378				86	0	0	32	7	17.9487
IDH2	0	genome.wustl.edu	37	15	90628287	90628287	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	15	90628287	90628287	C	T	SNP	IDH2	ENST00000330062	human	ensembl	74_37	-1	known	nonsense	c.1124	p.W375*	1.000	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	pfam_IsoPropMal-DH-like_dom,pirsf_Isocitrate_DH_NADP,tigrfam_Isocitrate_DH_NADP	-	no_errors	IDH2	HGNC	ENSG00000182054				164	0	0	101	16	13.6752
SNX29	0	genome.wustl.edu	37	16	12142284	12142284	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	12142284	12142284	G	C	SNP	SNX29	ENST00000566228	human	ensembl	74_37	+1	putative	missense	c.555	p.Q185H	1.000	NULL	pfam_Run,pfam_Phox,superfamily_Phox,smart_Run,smart_Phox,pfscan_Phox,pfscan_Run	-	no_errors	SNX29	HGNC	ENSG00000048471				191	0	0	147	23	13.5294
TSR3	0	genome.wustl.edu	37	16	1400843	1400843	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	1400843	1400843	C	G	SNP	TSR3	ENST00000007390	human	ensembl	74_37	-1	known	missense	c.491	p.C164S	1.000	pfam_DUF367	pfam_DUF367,pfam_RNaseL-inhib_metal-bd_dom	-	no_errors	TSR3	HGNC	ENSG00000007520				80	0	0	53	10	15.873
KIF22	0	genome.wustl.edu	37	16	29810320	29810320	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	29810320	29810320	T	A	SNP	KIF22	ENST00000160827	human	ensembl	74_37	+1	known	missense	c.574	p.S192T	0.894	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,superfamily_RuvA_2-like,smart_Kinesin_motor_dom,smart_Hlx-hairpin-Hlx_DNA-bd_motif,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF22	HGNC	ENSG00000079616				188	0	0	127	19	13.0137
IRX3	0	genome.wustl.edu	37	16	54318990	54318990	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	54318990	54318990	A	G	SNP	IRX3	ENST00000329734	human	ensembl	74_37	-1	known	missense	c.803	p.L268P	0.150	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX3	HGNC	ENSG00000177508				53	0	0	52	13	20
KATNB1	0	genome.wustl.edu	37	16	57787375	57787375	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	57787375	57787375	C	T	SNP	KATNB1	ENST00000379661	human	ensembl	74_37	+1	known	missense	c.1121	p.A374V	0.999	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	KATNB1	HGNC	ENSG00000140854				78	0	0	78	5	6.0241
ENSG00000224631	0	genome.wustl.edu	37	16	61089709	61089709	+	RNA	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	61089709	61089709	G	T	SNP	ENSG00000224631	ENST00000591758	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-51O6.1	Clone_based_vega_gene	ENSG00000224631				89	0	0	51	6	10.5263
CDH8	0	genome.wustl.edu	37	16	61687703	61687703	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	61687703	61687703	T	A	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	missense	c.2209	p.T737S	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				81	0	0	53	8	13.1148
CDH11	0	genome.wustl.edu	37	16	65022100	65022100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	16	65022100	65022100	G	A	SNP	CDH11	ENST00000268603	human	ensembl	74_37	-1	known	missense	c.959	p.T320M	0.997	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937				226	0	0	165	41	19.9029
ELAC2	0	genome.wustl.edu	37	17	12921103	12921103	+	Silent	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	12921103	12921103	G	C	SNP	ELAC2	ENST00000338034	human	ensembl	74_37	-1	known	silent	c.162	p.G54	0.999	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744				18	0	0	10	3	23.0769
PHF12	0	genome.wustl.edu	37	17	27237335	27237335	+	Silent	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	27237335	27237335	C	T	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	silent	c.2268	p.Q756	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				86	0	0	62	22	26.1905
HNF1B	0	genome.wustl.edu	37	17	36093716	36093716	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	36093716	36093716	C	G	SNP	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	missense	c.643	p.G215R	1.000	NULL	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				82	0	0	53	9	14.5161
ATP2A3	0	genome.wustl.edu	37	17	3854671	3854671	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	3854671	3854671	C	A	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	nonsense	c.337	p.E113*	0.998	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370				67	0	0	46	3	6.12245
KRT25	0	genome.wustl.edu	37	17	38910169	38910169	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	38910169	38910169	C	A	SNP	KRT25	ENST00000312150	human	ensembl	74_37	-1	known	missense	c.612	p.E204D	1.000	pfam_IF,prints_Keratin_I	pfam_IF,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897				139	0	0	92	17	15.5963
KCNH4	0	genome.wustl.edu	37	17	40330819	40330819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	40330819	40330819	C	T	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	missense	c.302	p.R101H	1.000	pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,superfamily_PAS,smart_PAC,prints_K_chnl_volt-dep_ELK,pfscan_PAS-assoc_C,tigrfam_PAS	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				61	0	0	53	3	5.35714
MYBBP1A	0	genome.wustl.edu	37	17	4455258	4455258	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	4455258	4455258	G	C	SNP	MYBBP1A	ENST00000381556	human	ensembl	74_37	-1	known	missense	c.940	p.P314A	1.000	pfam_DNA_pol_V,superfamily_ARM-type_fold	pfam_DNA_pol_V,superfamily_ARM-type_fold	-	no_errors	MYBBP1A	HGNC	ENSG00000132382				163	0	0	96	21	17.9487
SLC13A5	0	genome.wustl.edu	37	17	6610071	6610071	+	Silent	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	6610071	6610071	G	T	SNP	SLC13A5	ENST00000433363	human	ensembl	74_37	-1	known	silent	c.258	p.T86	1.000	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A5	HGNC	ENSG00000141485				37	0	0	20	7	25.9259
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				99	0	0	43	19	30.6452
ZNF440	0	genome.wustl.edu	37	19	11942980	11942980	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	11942980	11942980	A	G	SNP	ZNF440	ENST00000304060	human	ensembl	74_37	+1	known	missense	c.989	p.H330R	0.209	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF440	HGNC	ENSG00000171295				77	0	0	75	10	11.7647
ZNF490	0	genome.wustl.edu	37	19	12692195	12692195	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	12692195	12692195	C	T	SNP	ZNF490	ENST00000311437	human	ensembl	74_37	-1	known	missense	c.694	p.A232T	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF490	HGNC	ENSG00000188033				63	0	0	63	16	20.2532
PGLS	0	genome.wustl.edu	37	19	17631842	17631842	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	17631842	17631842	G	A	SNP	PGLS	ENST00000252603	human	ensembl	74_37	+1	known	silent	c.729	p.A243	0.279	tigrfam_6-phosphogluconolactonase_DevB	tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	PGLS	HGNC	ENSG00000130313				16	0	0	14	3	17.6471
TSSK6	0	genome.wustl.edu	37	19	19626080	19626080	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	19626080	19626080	C	T	SNP	TSSK6	ENST00000360913	human	ensembl	74_37	-1	known	missense	c.157	p.V53I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK6	HGNC	ENSG00000178093				70	0	0	54	9	14.2857
LSR	0	genome.wustl.edu	37	19	35757794	35757794	+	Silent	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	35757794	35757794	C	T	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	silent	c.1212	p.V404	0.985	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699				28	0	0	29	2	6.45161
PSENEN	0	genome.wustl.edu	37	19	36237375	36237375	+	Silent	SNP	A	A	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	36237375	36237375	A	T	SNP	PSENEN	ENST00000222266	human	ensembl	74_37	+1	known	silent	c.117	p.R39	0.994	pfam_Gamma_Secretase_Asp_P_PEN2	pfam_Gamma_Secretase_Asp_P_PEN2	-	no_errors	PSENEN	HGNC	ENSG00000205155				179	0	0	94	20	17.5439
WDR62	0	genome.wustl.edu	37	19	36582142	36582142	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	36582142	36582142	G	A	SNP	WDR62	ENST00000401500	human	ensembl	74_37	+1	known	missense	c.2075	p.C692Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR62	HGNC	ENSG00000075702				64	0	0	46	12	20.6897
DHX34	0	genome.wustl.edu	37	19	47856911	47856911	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	47856911	47856911	G	A	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	silent	c.624	p.A208	0.584	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				19	0	0	13	6	31.5789
SCAF1	0	genome.wustl.edu	37	19	50149403	50149403	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	50149403	50149403	C	T	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.205	p.R69W	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				87	0	0	25	11	30.5556
KLK8	0	genome.wustl.edu	37	19	51499377	51499377	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	51499377	51499377	C	T	SNP	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	missense	c.856	p.V286I	0.962	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				165	0	0	123	28	18.543
ZNF83	0	genome.wustl.edu	37	19	53116897	53116897	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	53116897	53116897	G	A	SNP	ZNF83	ENST00000301096	human	ensembl	74_37	-1	known	silent	c.921	p.H307	0.088	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF83	HGNC	ENSG00000167766				130	0	0	112	6	5.08475
ZNF600	0	genome.wustl.edu	37	19	53270700	53270700	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	53270700	53270700	G	A	SNP	ZNF600	ENST00000338230	human	ensembl	74_37	-1	known	silent	c.309	p.I103	0.001	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF600	HGNC	ENSG00000189190				184	0	0	142	27	15.9763
ZNF784	0	genome.wustl.edu	37	19	56133358	56133358	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	19	56133358	56133358	C	T	SNP	ZNF784	ENST00000325351	human	ensembl	74_37	-1	known	missense	c.731	p.R244H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF784	HGNC	ENSG00000179922				23	0	0	17	2	10.5263
HOXD4	0	genome.wustl.edu	37	2	177016412	177016412	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	177016412	177016412	C	A	SNP	HOXD4	ENST00000306324	human	ensembl	74_37	+1	known	missense	c.51	p.F17L	0.994	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXD4	HGNC	ENSG00000170166				75	0	0	72	10	12.1951
TTN	0	genome.wustl.edu	37	2	179444392	179444392	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	179444392	179444392	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.59828	p.K19943R	0.998	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				99	0	0	62	16	20.5128
DNAH7	0	genome.wustl.edu	37	2	196749505	196749505	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	196749505	196749505	G	A	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.5567	p.S1856F	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				49	0	0	32	8	20
RAPH1	0	genome.wustl.edu	37	2	204334977	204334977	+	Silent	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	204334977	204334977	A	G	SNP	RAPH1	ENST00000374493	human	ensembl	74_37	-1	known	silent	c.873	p.S291	1.000	superfamily_Kinase-like_dom	pfam_Ras-assoc,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,prints_Paxillin	-	no_errors	RAPH1	HGNC	ENSG00000173166				127	0	0	96	17	15.0442
EPHA4	0	genome.wustl.edu	37	2	222428528	222428528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	222428528	222428528	G	A	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.746	p.A249V	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106				135	0	0	101	27	21.0938
DRC1	0	genome.wustl.edu	37	2	26676341	26676341	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	26676341	26676341	C	A	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	missense	c.1843	p.P615T	0.000	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856				35	0	0	37	10	21.2766
EIF2AK2	0	genome.wustl.edu	37	2	37364140	37364140	+	Silent	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	37364140	37364140	T	C	SNP	EIF2AK2	ENST00000233057	human	ensembl	74_37	-1	known	silent	c.708	p.Q236	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_dsRNA-bd_dom,superfamily_Kinase-like_dom,smart_dsRNA-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_dsRNA-bd_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EIF2AK2	HGNC	ENSG00000055332				24	0	0	18	7	28
NRXN1	0	genome.wustl.edu	37	2	50780158	50780158	+	Silent	SNP	T	T	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	50780158	50780158	T	A	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	silent	c.1302	p.V434	0.497	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				103	0	0	77	35	31.25
DCTN1	0	genome.wustl.edu	37	2	74596550	74596550	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	74596550	74596550	C	A	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	missense	c.1461	p.E487D	1.000	superfamily_P-loop_NTPase	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				110	0	0	98	25	20.3252
NINL	0	genome.wustl.edu	37	20	25434228	25434228	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	25434228	25434228	C	G	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.4008	p.E1336D	0.992	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				79	0	0	77	9	10.4651
PTPRT	0	genome.wustl.edu	37	20	41306531	41306531	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	41306531	41306531	G	A	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	silent	c.1128	p.P376	0.921	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090				106	0	0	96	10	9.43396
TOMM34	0	genome.wustl.edu	37	20	43580479	43580479	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	43580479	43580479	T	C	SNP	TOMM34	ENST00000372813	human	ensembl	74_37	-1	known	missense	c.545	p.N182S	0.009	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM34	HGNC	ENSG00000025772				87	0	0	74	13	14.9425
GPCPD1	0	genome.wustl.edu	37	20	5579448	5579448	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	5579448	5579448	A	T	SNP	GPCPD1	ENST00000379019	human	ensembl	74_37	-1	known	nonsense	c.69	p.C23*	1.000	pfam_CBM_fam20,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	pfam_GlyceroP-diester-Pdiesterase,pfam_CBM_fam20,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Carb-bd-like_fold,pfscan_CBM_fam20	-	no_errors	GPCPD1	HGNC	ENSG00000125772				44	0	0	23	3	11.5385
SLC17A9	0	genome.wustl.edu	37	20	61598562	61598562	+	RNA	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	61598562	61598562	A	G	SNP	SLC17A9	ENST00000488738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC17A9	HGNC	ENSG00000101194				29	0	0	35	4	10.2564
YTHDF1	0	genome.wustl.edu	37	20	61834049	61834049	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	61834049	61834049	C	A	SNP	YTHDF1	ENST00000370339	human	ensembl	74_37	-1	known	nonsense	c.1243	p.E415*	1.000	pfscan_YTH_domain	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF1	HGNC	ENSG00000149658				101	0	0	108	19	14.9606
KCNQ2	0	genome.wustl.edu	37	20	62044926	62044926	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	62044926	62044926	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.1556	p.R519Q	1.000	pfam_K_chnl_volt-dep_KCNQ_C	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043				173	0	0	145	18	11.0429
SRMS	0	genome.wustl.edu	37	20	62172223	62172223	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	20	62172223	62172223	G	C	SNP	SRMS	ENST00000217188	human	ensembl	74_37	-1	known	missense	c.1415	p.S472C	0.994	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SRMS	HGNC	ENSG00000125508				174	0	0	120	21	14.8936
TUBA8	0	genome.wustl.edu	37	22	18609664	18609664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	18609664	18609664	C	T	SNP	TUBA8	ENST00000330423	human	ensembl	74_37	+1	known	missense	c.919	p.P307S	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA8	HGNC	ENSG00000183785				134	0	0	105	25	19.2308
MYO18B	0	genome.wustl.edu	37	22	26422472	26422472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	26422472	26422472	C	T	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	missense	c.6532	p.R2178W	0.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454				197	0	0	138	24	14.8148
TCN2	0	genome.wustl.edu	37	22	31009006	31009006	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	31009006	31009006	T	G	SNP	TCN2	ENST00000215838	human	ensembl	74_37	+1	known	missense	c.404	p.L135R	1.000	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	TCN2	HGNC	ENSG00000185339				61	0	0	40	4	9.09091
FOXRED2	0	genome.wustl.edu	37	22	36902217	36902217	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	36902217	36902217	A	G	SNP	FOXRED2	ENST00000216187	human	ensembl	74_37	-1	known	missense	c.253	p.Y85H	0.963	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	-	no_errors	FOXRED2	HGNC	ENSG00000100350				60	0	0	46	17	26.9841
SH3BP1	0	genome.wustl.edu	37	22	38040901	38040901	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	38040901	38040901	C	G	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	missense	c.712	p.H238D	1.000	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092				50	0	0	42	7	14.2857
XPNPEP3	0	genome.wustl.edu	37	22	41253153	41253153	+	RNA	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	41253153	41253153	T	C	SNP	XPNPEP3	ENST00000482652	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XPNPEP3	HGNC	ENSG00000196236				32	0	0	22	8	26.6667
RRP7A	0	genome.wustl.edu	37	22	42910199	42910199	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	22	42910199	42910199	G	A	SNP	RRP7A	ENST00000323013	human	ensembl	74_37	-1	known	missense	c.670	p.R224W	1.000	NULL	NULL	-	no_errors	RRP7A	HGNC	ENSG00000189306				32	0	0	20	2	9.09091
ATP2C1	0	genome.wustl.edu	37	3	130656284	130656284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	130656284	130656284	G	A	SNP	ATP2C1	ENST00000393221	human	ensembl	74_37	+1	known	missense	c.439	p.V147I	0.998	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C1	HGNC	ENSG00000017260				57	0	0	35	7	16.6667
PRR23C	0	genome.wustl.edu	37	3	138762979	138762979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	138762979	138762979	C	T	SNP	PRR23C	ENST00000413199	human	ensembl	74_37	-1	known	missense	c.484	p.E162K	0.001	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23C	HGNC	ENSG00000233701				24	0	0	21	3	12.5
ATR	0	genome.wustl.edu	37	3	142297490	142297490	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	142297490	142297490	G	A	SNP	ATR	ENST00000350721	human	ensembl	74_37	-1	known	silent	c.57	p.G19	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054				23	0	0	22	6	21.4286
ACTL6A	0	genome.wustl.edu	37	3	179298958	179298958	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	179298958	179298958	A	C	SNP	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	missense	c.976	p.S326R	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6A	HGNC	ENSG00000136518				195	0	0	131	26	16.5605
ENSG00000263826	0	genome.wustl.edu	37	3	186501364	186501364	+	RNA	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	186501364	186501364	G	T	SNP	ENSG00000263826	ENST00000577781	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-573D15.9	Clone_based_vega_gene	ENSG00000263826				97	0	0	62	17	21.519
FYCO1	0	genome.wustl.edu	37	3	46009092	46009092	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	46009092	46009092	G	C	SNP	FYCO1	ENST00000535325	human	ensembl	74_37	-1	known	missense	c.1734	p.N578K	0.001	NULL	pfam_Znf_FYVE,pfam_Run,superfamily_GOLD,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Znf_FYVE,pfscan_GOLD,pfscan_Run,pfscan_Znf_FYVE-rel	-	no_errors	FYCO1	HGNC	ENSG00000163820				119	0	0	83	24	22.4299
MON1A	0	genome.wustl.edu	37	3	49949401	49949401	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	49949401	49949401	G	A	SNP	MON1A	ENST00000296473	human	ensembl	74_37	-1	known	silent	c.462	p.Y154	0.654	NULL	pfam_Vacuolar_fusion_protein_MON1,superfamily_Longin-like_dom,prints_Vacuolar_fusion_protein_MON1	-	no_errors	MON1A	HGNC	ENSG00000164077				81	0	0	36	16	30.7692
DOCK3	0	genome.wustl.edu	37	3	51308381	51308381	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	51308381	51308381	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	missense	c.2491	p.V831M	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				149	0	0	69	11	13.75
RPUSD3	0	genome.wustl.edu	37	3	9882475	9882475	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	3	9882475	9882475	A	T	SNP	RPUSD3	ENST00000383820	human	ensembl	74_37	-1	known	missense	c.422	p.L141H	1.000	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	pfam_PsdUridine_synth_RsuA/RluD,superfamily_PsdUridine_synth_cat_dom	-	no_errors	RPUSD3	HGNC	ENSG00000156990				47	0	0	18	9	33.3333
ADH6	0	genome.wustl.edu	37	4	100134789	100134789	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	100134789	100134789	C	G	SNP	ADH6	ENST00000394899	human	ensembl	74_37	-1	known	missense	c.236	p.G79A	1.000	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	ADH6	HGNC	ENSG00000172955				111	0	0	46	12	20.6897
KIAA1109	0	genome.wustl.edu	37	4	123147962	123147962	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	123147962	123147962	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.2894	p.G965V	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				117	0	0	56	12	17.6471
HHIP-AS1	0	genome.wustl.edu	37	4	145580768	145580768	+	RNA	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	145580768	145580768	G	A	SNP	HHIP-AS1	ENST00000512359	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.791	-	-	-	no_errors	HHIP-AS1	HGNC	ENSG00000248890				145	0	0	85	18	17.4757
POU4F2	0	genome.wustl.edu	37	4	147561058	147561058	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	147561058	147561058	C	G	SNP	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	missense	c.328	p.R110G	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615				59	0	0	60	8	11.7647
TIGD4	0	genome.wustl.edu	37	4	153691798	153691798	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	153691798	153691798	T	C	SNP	TIGD4	ENST00000304337	human	ensembl	74_37	-1	known	missense	c.359	p.K120R	1.000	pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,pfam_HTH_Psq,pfam_Centromere_CenpB_dimerisation,superfamily_Homeodomain-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_HTH_Psq	-	no_errors	TIGD4	HGNC	ENSG00000169989				122	0	0	87	11	11.2245
LRP2BP	0	genome.wustl.edu	37	4	186299314	186299314	+	Silent	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	186299314	186299314	G	C	SNP	LRP2BP	ENST00000362004	human	ensembl	74_37	-1	known	silent	c.27	p.P9	0.775	NULL	pfam_Sel1-like,pfam_TPR_2,smart_Sel1-like,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	LRP2BP	HGNC	ENSG00000109771				120	0	0	88	14	13.7255
FAM193A	0	genome.wustl.edu	37	4	2641518	2641518	+	Silent	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	2641518	2641518	G	C	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	silent	c.222	p.L74	0.992	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				37	0	0	39	14	26.4151
PDS5A	0	genome.wustl.edu	37	4	39978195	39978195	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	39978195	39978195	C	A	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.3	p.M1I	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				56	0	0	34	15	30.6122
UGT2B11	0	genome.wustl.edu	37	4	70066333	70066333	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	70066333	70066333	C	A	SNP	UGT2B11	ENST00000446444	human	ensembl	74_37	-1	known	missense	c.1415	p.G472V	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B11	HGNC	ENSG00000213759				155	0	0	113	20	15.0376
AFM	0	genome.wustl.edu	37	4	74351731	74351731	+	Silent	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	74351731	74351731	C	A	SNP	AFM	ENST00000226355	human	ensembl	74_37	+1	known	silent	c.423	p.T141	0.990	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				98	0	0	78	8	9.30233
ACOX3	0	genome.wustl.edu	37	4	8372710	8372710	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	4	8372710	8372710	A	G	SNP	ACOX3	ENST00000413009	human	ensembl	74_37	-1	known	missense	c.1840	p.C614R	0.830	pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				64	0	0	57	3	5
SLC6A18	0	genome.wustl.edu	37	5	1239618	1239618	+	Silent	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	1239618	1239618	C	T	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.786	p.F262	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363				167	0	0	109	24	18.0451
DNAH5	0	genome.wustl.edu	37	5	13944508	13944508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	13944508	13944508	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.40	p.V14I	0.998	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				50	0	0	42	7	14.2857
ATP10B	0	genome.wustl.edu	37	5	160033937	160033937	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	160033937	160033937	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.2995	p.D999N	0.997	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				128	0	0	95	30	24
ITGA1	0	genome.wustl.edu	37	5	52204856	52204856	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	52204856	52204856	G	A	SNP	ITGA1	ENST00000282588	human	ensembl	74_37	+1	known	silent	c.1584	p.V528	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA1	HGNC	ENSG00000213949				67	0	0	59	13	18.0556
SV2C	0	genome.wustl.edu	37	5	75505622	75505622	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	75505622	75505622	C	T	SNP	SV2C	ENST00000502798	human	ensembl	74_37	+1	known	missense	c.823	p.R275W	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2C	HGNC	ENSG00000122012				105	0	0	71	13	15.4762
VCAN	0	genome.wustl.edu	37	5	82816417	82816417	+	Silent	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	82816417	82816417	A	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	silent	c.2292	p.R764	0.007	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				55	0	0	51	9	15
DTNBP1	0	genome.wustl.edu	37	6	15524837	15524837	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	15524837	15524837	A	C	SNP	DTNBP1	ENST00000355917	human	ensembl	74_37	-1	known	missense	c.734	p.M245R	1.000	pfam_Dysbindin	pfam_Dysbindin,superfamily_Trp_syn_b_sub_like_PLP_eny_SF	-	no_errors	DTNBP1	HGNC	ENSG00000047579				36	0	0	39	7	15.2174
NOX3	0	genome.wustl.edu	37	6	155761124	155761124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	155761124	155761124	C	T	SNP	NOX3	ENST00000159060	human	ensembl	74_37	-1	known	missense	c.634	p.V212I	0.827	pfam_Fe3_Rdtase_TM_dom,prints_Cyt_b245_heavy_chain	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771				59	0	0	44	6	12
C6orf118	0	genome.wustl.edu	37	6	165715558	165715558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	165715558	165715558	G	A	SNP	C6orf118	ENST00000230301	human	ensembl	74_37	-1	known	missense	c.253	p.R85W	0.000	NULL	superfamily_Ribonuclease/ribotoxin	-	no_errors	C6orf118	HGNC	ENSG00000112539				107	0	0	54	20	27.027
HIST1H2BC	0	genome.wustl.edu	37	6	26124041	26124041	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	26124041	26124041	T	G	SNP	HIST1H2BC	ENST00000314332	human	ensembl	74_37	-1	known	missense	c.92	p.K31T	1.000	superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BC	HGNC	ENSG00000180596				245	0	0	141	30	17.5439
PSMB8	0	genome.wustl.edu	37	6	32809961	32809961	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	32809961	32809961	G	A	SNP	PSMB8	ENST00000374882	human	ensembl	74_37	-1	known	missense	c.487	p.R163W	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,prints_Pept_T1A_subB	-	no_errors	PSMB8	HGNC	ENSG00000204264				100	0	0	74	5	6.32911
HLA-DOA	0	genome.wustl.edu	37	6	32976056	32976056	+	RNA	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	32976056	32976056	A	G	SNP	HLA-DOA	ENST00000467465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	HLA-DOA	HGNC	ENSG00000204252				59	0	0	32	2	5.88235
PACSIN1	0	genome.wustl.edu	37	6	34498360	34498360	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	34498360	34498360	G	A	SNP	PACSIN1	ENST00000244458	human	ensembl	74_37	+1	known	missense	c.1033	p.G345S	0.998	NULL	pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_FCH_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PACSIN1	HGNC	ENSG00000124507				18	0	0	20	5	20
AARS2	0	genome.wustl.edu	37	6	44274230	44274230	+	Splice_Site	SNP	C	C	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	44274230	44274230	C	G	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	splice_site	c.1188+1	e8+1	1.000	-	-	-	no_errors	AARS2	HGNC	ENSG00000124608				344	1	0.289855	249	47	15.8784
CD109	0	genome.wustl.edu	37	6	74407197	74407197	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	74407197	74407197	A	G	SNP	CD109	ENST00000287097	human	ensembl	74_37	+1	known	missense	c.149	p.E50G	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	CD109	HGNC	ENSG00000156535				129	0	0	90	20	18.1818
MUC17	0	genome.wustl.edu	37	7	100675458	100675458	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	100675458	100675458	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.761	p.S254N	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				236	0	0	191	38	16.5939
FAM71F2	0	genome.wustl.edu	37	7	128317770	128317770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	128317770	128317770	T	C	SNP	FAM71F2	ENST00000480462	human	ensembl	74_37	+1	known	missense	c.518	p.I173T	1.000	pfam_DUF3699	pfam_DUF3699	-	no_errors	FAM71F2	HGNC	ENSG00000205085				60	0	0	53	11	17.1875
PLXNA4	0	genome.wustl.edu	37	7	132193205	132193205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	132193205	132193205	G	A	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.248	p.T83M	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				82	0	0	79	12	13.1868
PTPRN2	0	genome.wustl.edu	37	7	157926444	157926444	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	157926444	157926444	G	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.1550	p.A517V	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				120	0	0	82	20	19.6078
PTPRN2	0	genome.wustl.edu	37	7	157926445	157926445	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	157926445	157926445	C	A	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.1549	p.A517S	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				120	0	0	83	20	19.4175
DNAH11	0	genome.wustl.edu	37	7	21630895	21630895	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	21630895	21630895	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.2367	p.L789	0.970	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877				69	0	0	34	16	32
ENSG00000272655	0	genome.wustl.edu	37	7	44058674	44058674	+	RNA	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	44058674	44058674	G	A	SNP	ENSG00000272655	ENST00000326391	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	POLR2J4	Clone_based_vega_gene	ENSG00000272655				66	0	0	53	13	19.697
AP5Z1	0	genome.wustl.edu	37	7	4831027	4831027	+	RNA	SNP	G	G	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	4831027	4831027	G	T	SNP	AP5Z1	ENST00000490487	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.085	-	-	-	no_errors	AP5Z1	HGNC	ENSG00000242802				11	0	0	20	7	25.9259
C1GALT1	0	genome.wustl.edu	37	7	7283186	7283186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	7	7283186	7283186	C	T	SNP	C1GALT1	ENST00000223122	human	ensembl	74_37	+1	known	missense	c.920	p.S307F	1.000	NULL	pfam_Fringe-like,pfam_Glyco_trans_31	-	no_errors	C1GALT1	HGNC	ENSG00000106392				133	0	0	115	63	35.3933
COL14A1	0	genome.wustl.edu	37	8	121344951	121344951	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	121344951	121344951	C	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.4762	p.P1588T	0.976	pfam_Collagen	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				27	0	0	23	5	17.8571
CSMD1	0	genome.wustl.edu	37	8	2967802	2967802	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	2967802	2967802	A	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.6489	p.F2163L	0.997	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				22	0	0	14	4	22.2222
PRDM14	0	genome.wustl.edu	37	8	70980506	70980506	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	70980506	70980506	T	C	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	missense	c.871	p.S291G	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				136	0	0	85	29	25.4386
HEY1	0	genome.wustl.edu	37	8	80677768	80677768	+	Silent	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	80677768	80677768	G	A	SNP	HEY1	ENST00000337919	human	ensembl	74_37	-1	known	silent	c.582	p.I194	0.883	NULL	pfam_bHLH_dom,pfam_Orange,superfamily_bHLH_dom,smart_bHLH_dom,smart_Orange_subgr,pfscan_Orange,pfscan_bHLH_dom	-	no_errors	HEY1	HGNC	ENSG00000164683				65	0	0	36	11	23.4043
PAG1	0	genome.wustl.edu	37	8	81897495	81897495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	81897495	81897495	C	T	SNP	PAG1	ENST00000220597	human	ensembl	74_37	-1	known	missense	c.392	p.R131Q	1.000	NULL	NULL	-	no_errors	PAG1	HGNC	ENSG00000076641				55	0	0	29	5	14.7059
MMP16	0	genome.wustl.edu	37	8	89053829	89053829	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	89053829	89053829	C	A	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.1684	p.V562L	1.000	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103				92	0	0	89	14	13.5922
C9orf84	0	genome.wustl.edu	37	9	114464476	114464476	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	114464476	114464476	A	G	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.2806	p.S936P	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				41	0	0	38	9	19.1489
C9orf84	0	genome.wustl.edu	37	9	114500580	114500580	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	114500580	114500580	G	A	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.1205	p.T402M	0.002	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				40	0	0	24	3	11.1111
ASTN2	0	genome.wustl.edu	37	9	119976979	119976979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	119976979	119976979	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.673	p.V225M	0.998	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				60	0	0	41	9	18
RBM18	0	genome.wustl.edu	37	9	125023768	125023768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	125023768	125023768	C	T	SNP	RBM18	ENST00000417201	human	ensembl	74_37	-1	known	missense	c.4	p.E2K	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM18	HGNC	ENSG00000119446				77	0	0	50	5	9.09091
SPTAN1	0	genome.wustl.edu	37	9	131381150	131381150	+	Silent	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	131381150	131381150	G	C	SNP	SPTAN1	ENST00000358161	human	ensembl	74_37	+1	known	silent	c.5601	p.R1867	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_EF_hand_dom,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	SPTAN1	HGNC	ENSG00000197694				109	0	0	81	5	5.81395
FAM166B	0	genome.wustl.edu	37	9	35563035	35563035	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	35563035	35563035	C	A	SNP	FAM166B	ENST00000447837	human	ensembl	74_37	-1	known	missense	c.329	p.S110I	1.000	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166B	HGNC	ENSG00000215187				39	0	0	27	6	18.1818
PRUNE2	0	genome.wustl.edu	37	9	79326133	79326133	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	79326133	79326133	T	C	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	missense	c.1057	p.I353V	1.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				36	0	0	27	5	15.625
VPS13A	0	genome.wustl.edu	37	9	79865064	79865064	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	9	79865064	79865064	A	C	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.2089	p.N697H	0.003	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				76	0	0	42	16	27.5862
ARSE	0	genome.wustl.edu	37	X	2867424	2867424	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	X	2867424	2867424	G	C	SNP	ARSE	ENST00000545496	human	ensembl	74_37	-1	known	missense	c.850	p.H284D	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSE	HGNC	ENSG00000157399				53	0	0	38	4	9.52381
ACACB	0	genome.wustl.edu	37	12	109693967	109693981	+	In_Frame_Del	DEL	CGGATTCTTTGACCA	CGGATTCTTTGACCA	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	CGGATTCTTTGACCA	CGGATTCTTTGACCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	12	109693967	109693981	CGGATTCTTTGACCA	-	DEL	ACACB	ENST00000338432	human	ensembl	74_37	+1	known	in_frame_del	c.6189_6203	p.FFDHG2065in_frame_del	0.997:1.000:1.000:0.782:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555				110	0	0	85	8	8.60215
ACLY	0	genome.wustl.edu	37	17	40030139	40030139	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	17	40030139	40030139	C	-	DEL	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	frame_shift_del	c.2567	p.G856fs	1.000	superfamily_Citrate_synthase-like_core,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				84	0	0	71	17	19.3182
SNX17	0	genome.wustl.edu	37	2	27595527	27595528	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	2	27595527	27595528	-	C	INS	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	frame_shift_ins	c.176_177	p.K63fs	1.000:1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				77	0	0	98	24	19.6721
AP3S1	0	genome.wustl.edu	37	5	115202418	115202421	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	AAGA	AAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	5	115202418	115202421	AAGA	-	DEL	AP3S1	ENST00000316788	human	ensembl	74_37	+1	known	frame_shift_del	c.121_124	p.K41fs	1.000:1.000:1.000:1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP3S1	HGNC	ENSG00000177879				57	0	0	47	7	12.963
CEP57L1	0	genome.wustl.edu	37	6	109480614	109480617	+	Frame_Shift_Del	DEL	ATTT	ATTT	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	ATTT	ATTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	6	109480614	109480617	ATTT	-	DEL	CEP57L1	ENST00000359793	human	ensembl	74_37	+1	known	frame_shift_del	c.965_968	p.S324fs	0.657:0.684:0.727:0.928	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57L1	HGNC	ENSG00000183137				143	0	0	86	14	14
RECQL4	0	genome.wustl.edu	37	8	145741513	145741518	+	In_Frame_Del	DEL	AGCCCT	AGCCCT	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	AGCCCT	AGCCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	145741513	145741518	AGCCCT	-	DEL	RECQL4	ENST00000428558	human	ensembl	74_37	-1	known	in_frame_del	c.990_985	p.RA329in_frame_del	0.000:0.000:0.000:0.000:0.000:0.000	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DNA_rep_checkpnt_protein,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL4	HGNC	ENSG00000160957				144	0	0	92	11	10.6796
PSKH2	0	genome.wustl.edu	37	8	87076394	87076394	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4IY-01A-11D-A25D-08	TCGA-BR-A4IY-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a5988941-c04e-4acd-aaaa-e1a8caf1d68f	7b0b2c41-547a-4afe-b064-1fd5068ec402	8	87076394	87076394	T	-	DEL	PSKH2	ENST00000276616	human	ensembl	74_37	-1	known	frame_shift_del	c.652	p.T218fs	0.799	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PSKH2	HGNC	ENSG00000147613				82	0	0	75	7	8.53659
