Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
EPS8L3	0	genome.wustl.edu	37	1	110294652	110294652	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	110294652	110294652	G	A	SNP	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	missense	c.1402	p.R468W	0.966	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				191	0	0	108	31	22.3022
KCND3	0	genome.wustl.edu	37	1	112318860	112318860	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	112318860	112318860	G	C	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.1807	p.P603A	1.000	prints_K_chnl_volt-dep_Kv4.3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				77	0	0	42	10	19.2308
KCND3	0	genome.wustl.edu	37	1	112318869	112318869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	112318869	112318869	C	T	SNP	KCND3	ENST00000315987	human	ensembl	74_37	-1	known	missense	c.1798	p.G600R	1.000	prints_K_chnl_volt-dep_Kv4.3	pfam_K_chnl_volt-dep_Kv4_C,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.3,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND3	HGNC	ENSG00000171385				73	0	0	40	10	20
FCRLA	0	genome.wustl.edu	37	1	161681755	161681755	+	Silent	SNP	A	A	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	161681755	161681755	A	G	SNP	FCRLA	ENST00000367959	human	ensembl	74_37	+1	known	silent	c.600	p.V200	0.001	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLA	HGNC	ENSG00000132185				380	0	0	196	60	23.4375
C1orf65	0	genome.wustl.edu	37	1	223568231	223568231	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	223568231	223568231	C	T	SNP	C1orf65	ENST00000366875	human	ensembl	74_37	+1	known	missense	c.1414	p.R472C	0.000	NULL	NULL	-	no_errors	C1orf65	HGNC	ENSG00000178395				73	0	0	29	11	27.5
TRIM67	0	genome.wustl.edu	37	1	231339757	231339757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	231339757	231339757	G	A	SNP	TRIM67	ENST00000366652	human	ensembl	74_37	+1	known	missense	c.1679	p.R560Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM67	HGNC	ENSG00000119283				74	0	0	44	12	21.4286
OR2M3	0	genome.wustl.edu	37	1	248366497	248366497	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	248366497	248366497	C	A	SNP	OR2M3	ENST00000456743	human	ensembl	74_37	+1	known	missense	c.128	p.S43Y	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2M3	HGNC	ENSG00000228198				446	0	0	291	89	23.4211
SH3BP5L	0	genome.wustl.edu	37	1	249108783	249108783	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	249108783	249108783	C	T	SNP	SH3BP5L	ENST00000366472	human	ensembl	74_37	-1	known	silent	c.402	p.A134	0.005	pfam_SH3-bd_5	pfam_SH3-bd_5	-	no_errors	SH3BP5L	HGNC	ENSG00000175137				91	0	0	46	20	30.303
PRDM16	0	genome.wustl.edu	37	1	3322073	3322073	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	3322073	3322073	C	T	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	silent	c.1047	p.P349	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				140	1	0.70922	77	5	6.09756
CLCA1	0	genome.wustl.edu	37	1	86965518	86965518	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	1	86965518	86965518	G	A	SNP	CLCA1	ENST00000234701	human	ensembl	74_37	+1	known	silent	c.2535	p.Q845	0.923	tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA1	HGNC	ENSG00000016490				168	0	0	171	44	20.4651
HSPA12A	0	genome.wustl.edu	37	10	118451920	118451920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	118451920	118451920	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.605	p.T202M	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				409	0	0	173	45	20.6422
PHYH	0	genome.wustl.edu	37	10	13336443	13336443	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	13336443	13336443	G	T	SNP	PHYH	ENST00000263038	human	ensembl	74_37	-1	known	nonsense	c.399	p.Y133*	1.000	pfam_Phytyl_CoA_dOase	pfam_Phytyl_CoA_dOase	-	no_errors	PHYH	HGNC	ENSG00000107537				77	0	0	55	14	20.2899
CUBN	0	genome.wustl.edu	37	10	16990548	16990548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	16990548	16990548	G	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.5138	p.T1713M	0.139	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				55	0	0	31	9	22.5
RASSF4	0	genome.wustl.edu	37	10	45486417	45486417	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	45486417	45486417	G	T	SNP	RASSF4	ENST00000334940	human	ensembl	74_37	+1	known	missense	c.734	p.C245F	0.012	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SARAH_dom	-	no_errors	RASSF4	HGNC	ENSG00000107551				132	0	0	86	24	21.8182
CTNNA3	0	genome.wustl.edu	37	10	67726396	67726396	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	67726396	67726396	G	T	SNP	CTNNA3	ENST00000373744	human	ensembl	74_37	-1	known	missense	c.2374	p.L792M	0.999	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC	ENSG00000183230				92	0	0	64	20	23.8095
KIAA1279	0	genome.wustl.edu	37	10	70775550	70775550	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	10	70775550	70775550	A	G	SNP	KIAA1279	ENST00000361983	human	ensembl	74_37	+1	known	missense	c.1244	p.Y415C	1.000	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC	ENSG00000198954				129	0	0	115	42	26.7516
ZBTB16	0	genome.wustl.edu	37	11	114112981	114112981	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	11	114112981	114112981	C	T	SNP	ZBTB16	ENST00000335953	human	ensembl	74_37	+1	known	missense	c.1546	p.R516C	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB16	HGNC	ENSG00000109906				103	0	0	57	12	17.3913
DSCAML1	0	genome.wustl.edu	37	11	117395775	117395775	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	11	117395775	117395775	T	C	SNP	DSCAML1	ENST00000321322	human	ensembl	74_37	-1	known	missense	c.862	p.I288V	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAML1	HGNC	ENSG00000177103				20	0	0	11	5	31.25
MFRP	0	genome.wustl.edu	37	11	119217033	119217033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	11	119217033	119217033	G	A	SNP	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	missense	c.106	p.P36S	0.001	NULL	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				51	0	0	40	17	29.8246
OR4C13	0	genome.wustl.edu	37	11	49974639	49974639	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	11	49974639	49974639	C	T	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	missense	c.665	p.S222F	0.096	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				135	0	0	99	26	20.8
NOS1	0	genome.wustl.edu	37	12	117723124	117723124	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	117723124	117723124	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.1304	p.R435H	1.000	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				60	0	0	36	8	18.1818
CSAD	0	genome.wustl.edu	37	12	53566164	53566164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	53566164	53566164	C	T	SNP	CSAD	ENST00000267085	human	ensembl	74_37	-1	known	missense	c.391	p.G131R	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	CSAD	HGNC	ENSG00000139631				133	0	0	72	39	35.1351
VWF	0	genome.wustl.edu	37	12	6128308	6128308	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	6128308	6128308	G	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.4276	p.R1426C	1.000	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				135	1	0.735294	87	24	21.6216
SRGAP1	0	genome.wustl.edu	37	12	64485106	64485106	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	64485106	64485106	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	missense	c.1487	p.R496H	1.000	NULL	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				111	0	0	96	14	12.7273
CHD4	0	genome.wustl.edu	37	12	6692411	6692411	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	6692411	6692411	C	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.4013	p.R1338I	1.000	pfam_DUF1087	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642				272	1	0.3663	190	43	18.4549
EMG1	0	genome.wustl.edu	37	12	7083744	7083744	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	7083744	7083744	A	G	SNP	EMG1	ENST00000261406	human	ensembl	74_37	+1	known	missense	c.298	p.N100D	1.000	pfam_Rbsml_bgen_MeTrfase_EMG1/NEP1	pfam_Rbsml_bgen_MeTrfase_EMG1/NEP1	-	no_errors	EMG1	HGNC	ENSG00000126749				57	0	0	29	10	25.641
LGR5	0	genome.wustl.edu	37	12	71833964	71833964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	12	71833964	71833964	C	T	SNP	LGR5	ENST00000266674	human	ensembl	74_37	+1	known	missense	c.104	p.P35L	0.962	pfam_LRR-contain_N,smart_LRR-contain_N	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	LGR5	HGNC	ENSG00000139292				117	1	0.847458	67	36	34.9515
KLF12	0	genome.wustl.edu	37	13	74269809	74269809	+	Splice_Site	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	13	74269809	74269809	C	A	SNP	KLF12	ENST00000377666	human	ensembl	74_37	-1	known	splice_site	c.1028-1	e7-1	1.000	-	-	-	no_errors	KLF12	HGNC	ENSG00000118922				53	0	0	54	16	22.8571
SYNE2	0	genome.wustl.edu	37	14	64596520	64596520	+	Silent	SNP	G	G	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	14	64596520	64596520	G	C	SNP	SYNE2	ENST00000358025	human	ensembl	74_37	+1	known	silent	c.14040	p.V4680	0.455	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654				92	0	0	55	18	24.6575
CCDC88C	0	genome.wustl.edu	37	14	91749697	91749697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	14	91749697	91749697	C	T	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.4606	p.A1536T	0.000	NULL	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				58	0	0	36	10	21.7391
LGMN	0	genome.wustl.edu	37	14	93176158	93176158	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	14	93176158	93176158	G	A	SNP	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	silent	c.879	p.P293	0.011	NULL	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				144	0	0	93	25	21.1864
WHAMMP3	0	genome.wustl.edu	37	15	23205108	23205108	+	RNA	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	15	23205108	23205108	C	T	SNP	WHAMMP3	ENST00000400153	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP3	HGNC	ENSG00000187667				10	0	0	6	4	40
IL16	0	genome.wustl.edu	37	15	81592486	81592486	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	15	81592486	81592486	C	T	SNP	IL16	ENST00000302987	human	ensembl	74_37	+1	known	missense	c.2819	p.P940L	0.103	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				98	0	0	46	27	36.9863
ZNF263	0	genome.wustl.edu	37	16	3334025	3334025	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	16	3334025	3334025	G	T	SNP	ZNF263	ENST00000219069	human	ensembl	74_37	+1	known	missense	c.207	p.W69C	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF263	HGNC	ENSG00000006194				157	0	0	103	29	21.9697
CNGB1	0	genome.wustl.edu	37	16	57931809	57931809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	16	57931809	57931809	C	T	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	missense	c.2986	p.G996S	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				288	0	0	147	36	19.6721
MYOCD	0	genome.wustl.edu	37	17	12656514	12656514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	17	12656514	12656514	C	A	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.1909	p.H637N	1.000	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				185	1	0.537634	146	37	20.2186
PRPF8	0	genome.wustl.edu	37	17	1586851	1586851	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	17	1586851	1586851	C	T	SNP	PRPF8	ENST00000304992	human	ensembl	74_37	-1	known	missense	c.245	p.R82H	0.997	pfam_PRO8NT	pfam_PROCN,pfam_PRP8_domainIV,pfam_Prp8_U6-snRNA-bd,pfam_PRO8NT,pfam_Prp8_U5-snRNA-bd,pfam_PROCT,pfam_RRM_spliceosomal_PrP8,pfam_JAB_MPN_dom,superfamily_Cupredoxin,superfamily_Histone-fold,smart_JAB_MPN_dom	-	no_errors	PRPF8	HGNC	ENSG00000174231				123	0	0	95	28	22.7642
SLC6A4	0	genome.wustl.edu	37	17	28537598	28537598	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	17	28537598	28537598	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	missense	c.1384	p.R462W	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				179	0	0	96	20	17.2414
KRTAP4-8	0	genome.wustl.edu	37	17	39254221	39254221	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	17	39254221	39254221	C	A	SNP	KRTAP4-8	ENST00000333822	human	ensembl	74_37	-1	known	missense	c.116	p.C39F	0.998	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-8	HGNC	ENSG00000204880				124	0	0	54	26	32.5
TBX4	0	genome.wustl.edu	37	17	59557598	59557598	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	17	59557598	59557598	C	T	SNP	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	silent	c.939	p.L313	0.998	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				176	0	0	62	43	40.9524
CNDP2	0	genome.wustl.edu	37	18	72187233	72187233	+	Splice_Site	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	18	72187233	72187233	G	T	SNP	CNDP2	ENST00000324262	human	ensembl	74_37	+1	known	splice_site	c.1359-1	e11-1	1.000	-	-	-	no_errors	CNDP2	HGNC	ENSG00000133313				48	0	0	36	3	7.69231
LPHN1	0	genome.wustl.edu	37	19	14262032	14262032	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	14262032	14262032	C	G	SNP	LPHN1	ENST00000340736	human	ensembl	74_37	-1	known	missense	c.4078	p.E1360Q	1.000	pfam_GPCR_2_latrophilin_rcpt_C	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN1	HGNC	ENSG00000072071				80	0	0	41	8	16.3265
OCEL1	0	genome.wustl.edu	37	19	17337947	17337947	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	17337947	17337947	C	T	SNP	OCEL1	ENST00000215061	human	ensembl	74_37	+1	known	missense	c.391	p.P131S	0.000	NULL	pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	OCEL1	HGNC	ENSG00000099330				211	0	0	130	30	18.75
DAPK3	0	genome.wustl.edu	37	19	3959148	3959148	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	3959148	3959148	C	T	SNP	DAPK3	ENST00000301264	human	ensembl	74_37	-1	known	missense	c.1316	p.R439H	0.011	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DAPK3	HGNC	ENSG00000167657				28	0	0	17	6	26.087
FEM1A	0	genome.wustl.edu	37	19	4793724	4793724	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	4793724	4793724	C	A	SNP	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	missense	c.1858	p.L620M	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				82	0	0	42	4	8.69565
ZNF160	0	genome.wustl.edu	37	19	53572897	53572897	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	53572897	53572897	C	T	SNP	ZNF160	ENST00000418871	human	ensembl	74_37	-1	known	missense	c.890	p.R297H	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF160	HGNC	ENSG00000170949				145	0	0	126	22	14.8649
CAMSAP3	0	genome.wustl.edu	37	19	7682912	7682912	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	19	7682912	7682912	C	T	SNP	CAMSAP3	ENST00000446248	human	ensembl	74_37	+1	known	missense	c.3800	p.T1267I	0.653	superfamily_PRC_barrel-like	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP3	HGNC	ENSG00000076826				137	0	0	59	15	20.2703
LOC100131320	0	genome.wustl.edu	37	2	130725857	130725857	+	RNA	SNP	G	G	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	130725857	130725857	G	C	SNP	LOC100131320	ENST00000412425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.860	-	-	-	no_errors	AC079776.7	Clone_based_vega_gene	ENSG00000225449				50	0	0	18	5	21.7391
NEB	0	genome.wustl.edu	37	2	152420119	152420119	+	Splice_Site	SNP	C	C	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	152420119	152420119	C	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	splice_site	c.18693+1	e117+1	1.000	-	-	-	no_errors	NEB	HGNC	ENSG00000183091				272	0	0	154	50	24.5098
SCN1A	0	genome.wustl.edu	37	2	166852556	166852556	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	166852556	166852556	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.4548	p.S1516	0.992	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				49	0	0	72	13	15.2941
OSBPL6	0	genome.wustl.edu	37	2	179197373	179197373	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	179197373	179197373	G	T	SNP	OSBPL6	ENST00000315022	human	ensembl	74_37	+1	known	missense	c.315	p.Q105H	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156				129	0	0	93	22	19.1304
ITGA4	0	genome.wustl.edu	37	2	182350607	182350607	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	182350607	182350607	G	A	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	splice_site	c.1042-1	e10-1	1.000	-	-	-	no_errors	ITGA4	HGNC	ENSG00000115232				98	0	0	66	22	25
SCG2	0	genome.wustl.edu	37	2	224462648	224462648	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	224462648	224462648	C	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	silent	c.1353	p.S451	0.179	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951				145	0	0	120	20	14.2857
COL4A4	0	genome.wustl.edu	37	2	227919448	227919448	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	227919448	227919448	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	74_37	-1	known	missense	c.2722	p.R908W	0.037	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052				47	0	0	28	11	28.2051
VIT	0	genome.wustl.edu	37	2	36982155	36982155	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	36982155	36982155	T	C	SNP	VIT	ENST00000379242	human	ensembl	74_37	+1	known	missense	c.367	p.S123P	1.000	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	pfam_VWF_A,pfam_LCCL,superfamily_LCCL,smart_LCCL,smart_VWF_A,pfscan_LCCL,pfscan_VWF_A	-	no_errors	VIT	HGNC	ENSG00000205221				57	0	0	33	14	29.7872
STON1-GTF2A1L	0	genome.wustl.edu	37	2	48848398	48848398	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	48848398	48848398	C	G	SNP	STON1-GTF2A1L	ENST00000309827	human	ensembl	74_37	+1	known	missense	c.2328	p.H776Q	0.029	pfam_TFIIA_asu/bsu	pfam_TFIIA_asu/bsu,pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,superfamily_TFIIA_b-brl,superfamily_TFIIA_a-hlx,pfscan_Clathrin_mu_C,pfscan_SHD	-	no_errors	STON1-GTF2A1L	HGNC	ENSG00000068781				64	0	0	52	10	16.129
MTIF2	0	genome.wustl.edu	37	2	55470638	55470638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	2	55470638	55470638	C	T	SNP	MTIF2	ENST00000263629	human	ensembl	74_37	-1	known	missense	c.1478	p.R493Q	0.678	NULL	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,pfam_MIRO-like,pfam_GTP_binding_domain,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,superfamily_TIF_IF2_dom3,superfamily_Transl_B-barrel,tigrfam_Small_GTP-bd_dom	-	no_errors	MTIF2	HGNC	ENSG00000085760				104	0	0	101	18	15.1261
CHD6	0	genome.wustl.edu	37	20	40033670	40033670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	20	40033670	40033670	C	T	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.7711	p.D2571N	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				196	1	0.507614	129	97	42.9204
CDH22	0	genome.wustl.edu	37	20	44869878	44869878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	20	44869878	44869878	C	T	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	missense	c.274	p.E92K	0.996	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654				59	0	0	32	3	8.57143
PROKR2	0	genome.wustl.edu	37	20	5294853	5294853	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	20	5294853	5294853	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.163	p.V55I	0.966	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				161	0	0	111	22	16.5414
TAF4	0	genome.wustl.edu	37	20	60581663	60581663	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	20	60581663	60581663	G	A	SNP	TAF4	ENST00000252996	human	ensembl	74_37	-1	known	missense	c.2126	p.T709M	1.000	NULL	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699				35	0	0	31	9	22.5
SS18L1	0	genome.wustl.edu	37	20	60749663	60749663	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	20	60749663	60749663	C	T	SNP	SS18L1	ENST00000370848	human	ensembl	74_37	+1	known	missense	c.1136	p.P379L	1.000	NULL	pfam_SS18_fam	-	no_errors	SS18L1	HGNC	ENSG00000184402				292	0	0	181	34	15.814
TIMP3	0	genome.wustl.edu	37	22	33253288	33253288	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	22	33253288	33253288	C	A	SNP	TIMP3	ENST00000266085	human	ensembl	74_37	+1	known	missense	c.257	p.A86D	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP3	HGNC	ENSG00000100234				122	0	0	70	23	24.7312
IFT57	0	genome.wustl.edu	37	3	107881416	107881416	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	3	107881416	107881416	T	C	SNP	IFT57	ENST00000264538	human	ensembl	74_37	-1	known	missense	c.1198	p.T400A	1.000	pfam_Intra-flagellar_transport_57	pfam_Intra-flagellar_transport_57,superfamily_t-SNARE	-	no_errors	IFT57	HGNC	ENSG00000114446				57	0	0	105	19	15.3226
ARHGAP31	0	genome.wustl.edu	37	3	119102043	119102043	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	3	119102043	119102043	A	C	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.652	p.N218H	0.874	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				134	0	0	125	20	13.7931
PLSCR4	0	genome.wustl.edu	37	3	145917695	145917695	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	3	145917695	145917695	G	A	SNP	PLSCR4	ENST00000354952	human	ensembl	74_37	-1	known	missense	c.529	p.R177W	0.525	pfam_Scramblase	pfam_Scramblase	-	no_errors	PLSCR4	HGNC	ENSG00000114698				55	0	0	25	19	43.1818
DVL3	0	genome.wustl.edu	37	3	183885732	183885732	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	3	183885732	183885732	G	A	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	silent	c.1377	p.T459	0.020	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom,prints_Dishevelled_fam	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				120	0	0	131	19	12.6667
ITIH1	0	genome.wustl.edu	37	3	52822070	52822070	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	3	52822070	52822070	C	T	SNP	ITIH1	ENST00000273283	human	ensembl	74_37	+1	known	nonsense	c.1993	p.R665*	0.756	NULL	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,superfamily_PsdUridine_synth_cat_dom,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH1	HGNC	ENSG00000055957				160	0	0	69	17	19.7674
EMCN	0	genome.wustl.edu	37	4	101342516	101342516	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	4	101342516	101342516	A	C	SNP	EMCN	ENST00000296420	human	ensembl	74_37	-1	known	missense	c.587	p.V196G	0.997	pfam_Endomucin	pfam_Endomucin	-	no_errors	EMCN	HGNC	ENSG00000164035				61	0	0	59	21	26.25
FSTL5	0	genome.wustl.edu	37	4	162307215	162307215	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	4	162307215	162307215	G	T	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.2228	p.A743E	1.000	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				91	0	0	66	13	16.4557
RBM47	0	genome.wustl.edu	37	4	40428122	40428122	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	4	40428122	40428122	G	A	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	silent	c.1581	p.N527	0.975	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				113	0	0	52	17	24.6377
HERC5	0	genome.wustl.edu	37	4	89391825	89391825	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	4	89391825	89391825	G	A	SNP	HERC5	ENST00000264350	human	ensembl	74_37	+1	known	splice_site	c.1298+1	e10+1	1.000	-	-	-	no_errors	HERC5	HGNC	ENSG00000138646				61	0	0	70	17	19.5402
PCDHA6	0	genome.wustl.edu	37	5	140209170	140209170	+	Silent	SNP	G	G	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	140209170	140209170	G	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.1494	p.R498	0.002	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				235	0	0	135	36	21.0526
GRIA1	0	genome.wustl.edu	37	5	153085480	153085480	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	153085480	153085480	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	missense	c.1706	p.R569H	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				130	0	0	105	26	19.8473
ADAMTS12	0	genome.wustl.edu	37	5	33588884	33588884	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	33588884	33588884	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	silent	c.2685	p.S895	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				101	0	0	51	11	17.7419
IL7R	0	genome.wustl.edu	37	5	35876556	35876556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	35876556	35876556	G	A	SNP	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	missense	c.1348	p.V450I	1.000	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				52	0	0	44	17	27.8689
CMYA5	0	genome.wustl.edu	37	5	79033258	79033258	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	79033258	79033258	C	A	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.8670	p.S2890R	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309				87	0	0	72	18	20
EDIL3	0	genome.wustl.edu	37	5	83402534	83402534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	5	83402534	83402534	C	T	SNP	EDIL3	ENST00000296591	human	ensembl	74_37	-1	known	missense	c.584	p.R195H	0.997	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,pfam_EGF_extracell,superfamily_Galactose-bd-like,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	EDIL3	HGNC	ENSG00000164176				183	0	0	149	35	19.0217
GCM2	0	genome.wustl.edu	37	6	10874928	10874928	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	10874928	10874928	C	A	SNP	GCM2	ENST00000379491	human	ensembl	74_37	-1	known	missense	c.821	p.S274I	1.000	NULL	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827				274	0	0	197	48	19.5918
SHPRH	0	genome.wustl.edu	37	6	146240548	146240548	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	146240548	146240548	C	G	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	missense	c.4100	p.R1367T	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414				177	0	0	101	61	37.6543
STXBP5	0	genome.wustl.edu	37	6	147685193	147685193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	147685193	147685193	G	A	SNP	STXBP5	ENST00000321680	human	ensembl	74_37	+1	known	missense	c.2972	p.R991Q	1.000	pfam_Lgl_C_dom,superfamily_WD40_repeat_dom	pfam_LLGL2,pfam_WD40_repeat,pfam_Lgl_C_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,pfscan_Synaptobrevin,prints_Lethal2_giant	-	no_errors	STXBP5	HGNC	ENSG00000164506				166	0	0	146	38	20.6522
SYNE1	0	genome.wustl.edu	37	6	152540275	152540275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	152540275	152540275	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.21907	p.L7303F	0.997	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				108	0	0	92	5	5.15464
ARID1B	0	genome.wustl.edu	37	6	157528141	157528141	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	157528141	157528141	T	C	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	missense	c.5986	p.S1996P	1.000	pfam_DUF3518	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				174	0	0	88	53	37.5887
MDGA1	0	genome.wustl.edu	37	6	37623600	37623600	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	6	37623600	37623600	G	A	SNP	MDGA1	ENST00000297153	human	ensembl	74_37	-1	known	missense	c.455	p.T152M	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA1	HGNC	ENSG00000112139				43	0	0	26	3	10.3448
FOXP2	0	genome.wustl.edu	37	7	114299725	114299725	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	7	114299725	114299725	G	A	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	nonsense	c.1719	p.W573*	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				85	0	0	89	14	13.5922
RBM33	0	genome.wustl.edu	37	7	155499703	155499703	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	7	155499703	155499703	G	A	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.889	p.E297K	0.980	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				9	0	0	9	4	30.7692
TNS3	0	genome.wustl.edu	37	7	47342944	47342944	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	7	47342944	47342944	C	T	SNP	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	missense	c.3061	p.G1021S	0.122	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205				38	0	0	27	10	27.027
IKZF1	0	genome.wustl.edu	37	7	50468286	50468286	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	7	50468286	50468286	G	A	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	silent	c.1521	p.S507	0.942	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				68	0	0	41	5	10.8696
DTX2	0	genome.wustl.edu	37	7	76112246	76112246	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	7	76112246	76112246	C	T	SNP	DTX2	ENST00000324432	human	ensembl	74_37	+1	known	silent	c.690	p.P230	0.000	NULL	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX2	HGNC	ENSG00000091073				682	0	0	397	60	13.1291
ZNF706	0	genome.wustl.edu	37	8	102213962	102213962	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	8	102213962	102213962	C	G	SNP	ZNF706	ENST00000311212	human	ensembl	74_37	-1	known	missense	c.8	p.R3P	1.000	pfam_Uncharacterised_SERF	pfam_Uncharacterised_SERF	-	no_errors	ZNF706	HGNC	ENSG00000120963				60	0	0	44	7	13.7255
ZFPM2	0	genome.wustl.edu	37	8	106800947	106800947	+	Silent	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	8	106800947	106800947	G	A	SNP	ZFPM2	ENST00000407775	human	ensembl	74_37	+1	known	silent	c.534	p.G178	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM2	HGNC	ENSG00000169946				126	0	0	77	23	23
JRK	0	genome.wustl.edu	37	8	143745736	143745736	+	RNA	SNP	A	A	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	8	143745736	143745736	A	T	SNP	JRK	ENST00000507178	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	JRK	HGNC	ENSG00000234616				26	0	0	11	3	21.4286
OSGIN2	0	genome.wustl.edu	37	8	90937640	90937640	+	Silent	SNP	T	T	G			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	8	90937640	90937640	T	G	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	silent	c.1530	p.V510	0.247	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				152	0	0	92	64	41.0256
RNF20	0	genome.wustl.edu	37	9	104317113	104317113	+	Silent	SNP	C	C	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	9	104317113	104317113	C	A	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	silent	c.2157	p.A719	0.969	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				62	0	0	45	4	8.16327
CRB2	0	genome.wustl.edu	37	9	126133738	126133738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	9	126133738	126133738	G	A	SNP	CRB2	ENST00000373631	human	ensembl	74_37	+1	known	missense	c.2317	p.D773N	0.979	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB2	HGNC	ENSG00000148204				135	0	0	114	23	16.7883
COL5A1	0	genome.wustl.edu	37	9	137716542	137716542	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	9	137716542	137716542	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.4795	p.E1599K	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				153	0	0	97	15	13.3929
SLC34A3	0	genome.wustl.edu	37	9	140130522	140130522	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	9	140130522	140130522	G	A	SNP	SLC34A3	ENST00000361134	human	ensembl	74_37	+1	known	missense	c.1454	p.R485H	1.000	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A3	HGNC	ENSG00000198569				137	0	0	81	18	18.1818
SPIN1	0	genome.wustl.edu	37	9	91083396	91083396	+	Silent	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	9	91083396	91083396	C	T	SNP	SPIN1	ENST00000375859	human	ensembl	74_37	+1	known	silent	c.465	p.V155	0.998	pfam_Spin_Ssty	pfam_Spin_Ssty	-	no_errors	SPIN1	HGNC	ENSG00000106723				102	0	0	69	21	23.3333
MT-CO1	0	genome.wustl.edu	37	MT	6028	6028	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	MT	6028	6028	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.125	p.G42D	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804				81	0	0	0	2	100
WWC3	0	genome.wustl.edu	37	X	10058819	10058819	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	X	10058819	10058819	G	A	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.386	p.R129Q	1.000	NULL	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				40	0	0	19	11	36.6667
MUM1L1	0	genome.wustl.edu	37	X	105450563	105450563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J4-01A-12D-A25D-08	TCGA-BR-A4J4-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2c316b7e-6a82-4ba1-9f34-d8bfcf82d41e	cf5a2a68-639d-4623-ad6c-71d061db302e	X	105450563	105450563	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.1138	p.R380C	0.944	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502				15	0	0	10	9	47.3684
