Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103385904	103385904	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	103385904	103385904	G	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	missense	c.3761	p.P1254Q	0.991	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				142	0	0	96	10	9.43396
DRAM2	0	genome.wustl.edu	37	1	111661418	111661418	+	RNA	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	111661418	111661418	C	A	SNP	DRAM2	ENST00000477588	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DRAM2	HGNC	ENSG00000156171				26	0	0	13	2	13.3333
ATP8B2	0	genome.wustl.edu	37	1	154317185	154317185	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	154317185	154317185	T	G	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.2309	p.L770R	0.007	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515				123	0	0	98	21	17.6471
RUSC1-AS1	0	genome.wustl.edu	37	1	155291183	155291183	+	RNA	SNP	A	A	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	155291183	155291183	A	G	SNP	RUSC1-AS1	ENST00000446880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RUSC1-AS1	HGNC	ENSG00000225855				23	0	0	22	2	8.33333
XPR1	0	genome.wustl.edu	37	1	180794410	180794410	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	180794410	180794410	T	A	SNP	XPR1	ENST00000367590	human	ensembl	74_37	+1	known	missense	c.1064	p.M355K	1.000	pfam_EXS_C	pfam_EXS_C,pfam_SPX_N	-	no_errors	XPR1	HGNC	ENSG00000143324				135	0	0	103	12	10.4348
SLC26A9	0	genome.wustl.edu	37	1	205884254	205884254	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	205884254	205884254	G	A	SNP	SLC26A9	ENST00000340781	human	ensembl	74_37	-1	known	silent	c.2430	p.S810	0.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A9	HGNC	ENSG00000174502				59	0	0	76	5	6.17284
DLGAP3	0	genome.wustl.edu	37	1	35365313	35365313	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	35365313	35365313	C	T	SNP	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	missense	c.1343	p.R448Q	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				132	0	0	117	18	13.3333
GLIS1	0	genome.wustl.edu	37	1	53980408	53980408	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	53980408	53980408	G	A	SNP	GLIS1	ENST00000312233	human	ensembl	74_37	-1	known	silent	c.1248	p.G416	0.017	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC	ENSG00000174332				64	0	0	59	5	7.8125
LRRC7	0	genome.wustl.edu	37	1	70509665	70509665	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	1	70509665	70509665	A	G	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3884	p.N1295S	1.000	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				67	0	0	52	7	11.8644
FAM196A	0	genome.wustl.edu	37	10	128974037	128974037	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	10	128974037	128974037	G	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	missense	c.623	p.A208E	0.002	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916				56	0	0	66	6	8.33333
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				45	0	0	51	3	5.55556
FBXO18	0	genome.wustl.edu	37	10	5978466	5978466	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	10	5978466	5978466	C	T	SNP	FBXO18	ENST00000379999	human	ensembl	74_37	+1	known	silent	c.3030	p.G1010	0.920	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom,superfamily_P-loop_NTPase,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO18	HGNC	ENSG00000134452				77	0	0	69	4	5.47945
ATM	0	genome.wustl.edu	37	11	108235869	108235869	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	11	108235869	108235869	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	nonsense	c.8911	p.Q2971*	1.000	superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				59	0	0	50	9	15.2542
C11orf57	0	genome.wustl.edu	37	11	111951135	111951135	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	11	111951135	111951135	G	A	SNP	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	missense	c.173	p.R58Q	1.000	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				71	0	0	68	6	8.10811
CADM1	0	genome.wustl.edu	37	11	115049385	115049385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	11	115049385	115049385	G	A	SNP	CADM1	ENST00000452722	human	ensembl	74_37	-1	known	missense	c.1189	p.R397C	1.000	smart_Neurexin-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM1	HGNC	ENSG00000182985				180	1	0.552486	176	14	7.36842
USP2	0	genome.wustl.edu	37	11	119243689	119243689	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	11	119243689	119243689	G	A	SNP	USP2	ENST00000260187	human	ensembl	74_37	-1	known	missense	c.502	p.R168C	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP2	HGNC	ENSG00000036672				107	0	0	111	8	6.72269
OR5AR1	0	genome.wustl.edu	37	11	56431602	56431602	+	Silent	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	11	56431602	56431602	C	A	SNP	OR5AR1	ENST00000302969	human	ensembl	74_37	+1	known	silent	c.441	p.G147	0.560	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459				148	0	0	134	11	7.58621
HECTD4	0	genome.wustl.edu	37	12	112605326	112605326	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	112605326	112605326	G	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.11813	p.T3938N	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064				24	0	0	18	3	14.2857
NOS1	0	genome.wustl.edu	37	12	117672461	117672461	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	117672461	117672461	G	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.3144	p.L1048	0.709	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				61	0	0	43	15	25.8621
MSI1	0	genome.wustl.edu	37	12	120784004	120784004	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	120784004	120784004	C	T	SNP	MSI1	ENST00000257552	human	ensembl	74_37	-1	known	silent	c.981	p.S327	0.680	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MSI1	HGNC	ENSG00000135097				11	0	0	5	10	66.6667
HNRNPA1	0	genome.wustl.edu	37	12	54677679	54677679	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	54677679	54677679	G	A	SNP	HNRNPA1	ENST00000340913	human	ensembl	74_37	+1	known	missense	c.991	p.G331R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPA1	HGNC	ENSG00000135486				124	0	0	133	11	7.63889
PLXNC1	0	genome.wustl.edu	37	12	94673283	94673283	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	94673283	94673283	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	silent	c.3633	p.N1211	0.885	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				65	0	0	47	8	14.5455
ATP12A	0	genome.wustl.edu	37	13	25275019	25275019	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	13	25275019	25275019	G	A	SNP	ATP12A	ENST00000218548	human	ensembl	74_37	+1	known	missense	c.1858	p.V620M	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP12A	HGNC	ENSG00000075673				92	0	0	69	7	9.21053
EEF1DP3	0	genome.wustl.edu	37	13	32527529	32527529	+	RNA	SNP	A	A	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	13	32527529	32527529	A	G	SNP	EEF1DP3	ENST00000428783	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715				28	0	0	42	3	6.66667
MYO9A	0	genome.wustl.edu	37	15	72227788	72227788	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	15	72227788	72227788	T	C	SNP	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	missense	c.2416	p.I806V	0.992	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				71	0	0	59	4	6.34921
CREBBP	0	genome.wustl.edu	37	16	3778427	3778427	+	Silent	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	16	3778427	3778427	T	C	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	silent	c.6621	p.Q2207	0.992	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				30	0	0	32	3	8.57143
PNMT	0	genome.wustl.edu	37	17	37826401	37826401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	37826401	37826401	C	T	SNP	PNMT	ENST00000269582	human	ensembl	74_37	+1	known	missense	c.608	p.T203M	0.723	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	pfam_NNMT_TEMT_trans,pirsf_NNMT_TEMT_trans	-	no_errors	PNMT	HGNC	ENSG00000141744				32	0	0	33	23	41.0714
ZNF652	0	genome.wustl.edu	37	17	47394442	47394442	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	47394442	47394442	T	C	SNP	ZNF652	ENST00000362063	human	ensembl	74_37	-1	known	missense	c.646	p.S216G	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF652	HGNC	ENSG00000198740				56	0	0	51	3	5.55556
KCNH6	0	genome.wustl.edu	37	17	61613406	61613406	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	61613406	61613406	C	A	SNP	KCNH6	ENST00000583023	human	ensembl	74_37	+1	known	missense	c.1478	p.S493Y	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_2pore_dom_K_chnl	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_ELK,prints_2pore_dom_K_chnl,pfscan_cNMP-bd_dom	-	no_errors	KCNH6	HGNC	ENSG00000173826				88	0	0	82	5	5.74713
SCN4A	0	genome.wustl.edu	37	17	62018184	62018184	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	62018184	62018184	C	T	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.5458	p.A1820T	0.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314				68	0	0	57	5	8.06452
TSPAN10	0	genome.wustl.edu	37	17	79609404	79609404	+	RNA	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	79609404	79609404	G	A	SNP	TSPAN10	ENST00000540189	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TSPAN10	HGNC	ENSG00000182612				93	0	0	69	11	13.75
SLC25A10	0	genome.wustl.edu	37	17	79686876	79686876	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	17	79686876	79686876	G	T	SNP	SLC25A10	ENST00000541223	human	ensembl	74_37	+1	known	missense	c.1186	p.A396S	0.024	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,pfam_Ribosomal_L7/L12_C,superfamily_Mt_carrier_dom,superfamily_Ribosomal_L7/L12_oligo,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A10	HGNC	ENSG00000183048				353	0	0	271	28	9.36455
ANKRD30B	0	genome.wustl.edu	37	18	14752957	14752957	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	18	14752957	14752957	G	A	SNP	ANKRD30B	ENST00000358984	human	ensembl	74_37	+1	known	silent	c.456	p.L152	0.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30B	HGNC	ENSG00000180777				13	0	0	6	15	71.4286
CXXC1	0	genome.wustl.edu	37	18	47812529	47812529	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	18	47812529	47812529	C	T	SNP	CXXC1	ENST00000412036	human	ensembl	74_37	-1	known	missense	c.322	p.G108R	1.000	NULL	pfam_CpG-bd_C,pfam_Znf_CXXC,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	CXXC1	HGNC	ENSG00000154832				151	0	0	129	10	7.19424
CDH7	0	genome.wustl.edu	37	18	63548075	63548075	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	18	63548075	63548075	G	A	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	missense	c.2303	p.R768H	0.998	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				100	0	0	68	5	6.84932
ZNF480	0	genome.wustl.edu	37	19	52817462	52817462	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	19	52817462	52817462	C	T	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	silent	c.129	p.C43	0.293	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				137	0	0	130	11	7.80142
MAP2K7	0	genome.wustl.edu	37	19	7975916	7975916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	19	7975916	7975916	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.853	p.D285N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984				59	0	0	46	7	13.2075
SCN9A	0	genome.wustl.edu	37	2	167141099	167141099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	2	167141099	167141099	G	A	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.1841	p.P614L	1.000	pfam_DUF3451	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				79	0	0	64	6	8.57143
TTN	0	genome.wustl.edu	37	2	179646964	179646964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	2	179646964	179646964	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3355	p.G1119S	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				67	0	0	59	4	6.34921
KCNS3	0	genome.wustl.edu	37	2	18112991	18112991	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	2	18112991	18112991	T	C	SNP	KCNS3	ENST00000304101	human	ensembl	74_37	+1	known	missense	c.716	p.V239A	0.998	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745				115	0	0	128	14	9.85915
PLCL1	0	genome.wustl.edu	37	2	198949991	198949991	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	2	198949991	198949991	G	C	SNP	PLCL1	ENST00000428675	human	ensembl	74_37	+1	known	missense	c.1750	p.E584Q	1.000	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCL1	HGNC	ENSG00000115896				88	0	0	75	5	6.25
COL6A3	0	genome.wustl.edu	37	2	238268749	238268749	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	2	238268749	238268749	C	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.6264	p.P2088	0.002	pfam_Collagen	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359				42	0	0	34	6	15
PARD6B	0	genome.wustl.edu	37	20	49354417	49354417	+	Silent	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	20	49354417	49354417	T	C	SNP	PARD6B	ENST00000371610	human	ensembl	74_37	+1	known	silent	c.90	p.F30	1.000	pfam_OPR_PB1,smart_OPR_PB1	pfam_OPR_PB1,pfam_PDZ,superfamily_PDZ,smart_OPR_PB1,smart_PDZ,pfscan_PDZ	-	no_errors	PARD6B	HGNC	ENSG00000124171				63	0	0	58	4	6.45161
FAM209A	0	genome.wustl.edu	37	20	55100887	55100887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	20	55100887	55100887	G	A	SNP	FAM209A	ENST00000371328	human	ensembl	74_37	+1	known	missense	c.277	p.G93S	0.004	NULL	NULL	-	no_errors	FAM209A	HGNC	ENSG00000124103				175	0	0	172	10	5.49451
BAGE2	0	genome.wustl.edu	37	21	11098760	11098760	+	RNA	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	21	11098760	11098760	T	C	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				188	0	0	157	13	7.64706
KRTAP10-2	0	genome.wustl.edu	37	21	45971079	45971079	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	21	45971079	45971079	G	T	SNP	KRTAP10-2	ENST00000391621	human	ensembl	74_37	-1	known	missense	c.263	p.A88D	0.023	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445				136	0	0	124	9	6.76692
KRTAP10-2	0	genome.wustl.edu	37	21	45971206	45971206	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	21	45971206	45971206	C	T	SNP	KRTAP10-2	ENST00000391621	human	ensembl	74_37	-1	known	missense	c.136	p.V46I	0.015	NULL	NULL	-	no_errors	KRTAP10-2	HGNC	ENSG00000205445				78	0	0	75	9	10.7143
DIP2A	0	genome.wustl.edu	37	21	47976977	47976977	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	21	47976977	47976977	G	A	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.3627	p.L1209	0.885	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305				16	0	0	14	2	12.5
FANCD2	0	genome.wustl.edu	37	3	10078003	10078003	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	3	10078003	10078003	G	T	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	missense	c.471	p.L157F	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				49	0	0	41	3	6.81818
ARHGAP31	0	genome.wustl.edu	37	3	119135065	119135065	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	3	119135065	119135065	G	A	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.4289	p.R1430Q	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081				50	0	0	45	3	6.25
NRROS	0	genome.wustl.edu	37	3	196386798	196386798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	3	196386798	196386798	G	A	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	missense	c.284	p.R95H	0.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				49	0	0	55	3	5.17241
DLEC1	0	genome.wustl.edu	37	3	38139256	38139256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	3	38139256	38139256	G	A	SNP	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	missense	c.2587	p.V863I	0.006	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226				66	0	0	64	6	8.57143
CCDC110	0	genome.wustl.edu	37	4	186380606	186380606	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	4	186380606	186380606	T	C	SNP	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	missense	c.1135	p.R379G	0.530	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				149	0	0	137	8	5.51724
MIER3	0	genome.wustl.edu	37	5	56231537	56231537	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	5	56231537	56231537	C	A	SNP	MIER3	ENST00000381199	human	ensembl	74_37	-1	known	missense	c.478	p.D160Y	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	MIER3	HGNC	ENSG00000155545				60	0	0	61	4	6.15385
REV3L	0	genome.wustl.edu	37	6	111702600	111702600	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	111702600	111702600	T	C	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	missense	c.1144	p.I382V	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				42	0	0	43	3	6.52174
SYNE1	0	genome.wustl.edu	37	6	152542605	152542605	+	Silent	SNP	G	G	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	152542605	152542605	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.21612	p.P7204	0.979	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				107	0	0	96	8	7.69231
TAGAP	0	genome.wustl.edu	37	6	159456921	159456921	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	159456921	159456921	G	A	SNP	TAGAP	ENST00000367066	human	ensembl	74_37	-1	known	nonsense	c.2134	p.R712*	0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691				67	0	0	56	6	9.67742
CYP21A2	0	genome.wustl.edu	37	6	32006337	32006337	+	Silent	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	32006337	32006337	C	A	SNP	CYP21A2	ENST00000418967	human	ensembl	74_37	+1	known	silent	c.138	p.P46	0.067	superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852				14	0	0	6	8	57.1429
DNAH8	0	genome.wustl.edu	37	6	38905788	38905788	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	38905788	38905788	C	T	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	nonsense	c.10951	p.R3651*	0.018	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721				65	0	0	71	8	10.1266
BACH2	0	genome.wustl.edu	37	6	90718472	90718472	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	6	90718472	90718472	C	T	SNP	BACH2	ENST00000257749	human	ensembl	74_37	-1	known	missense	c.92	p.R31Q	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_bZIP,superfamily_BTB/POZ_fold,superfamily_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182				101	0	0	87	7	7.44681
NPSR1	0	genome.wustl.edu	37	7	34867067	34867067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	7	34867067	34867067	C	T	SNP	NPSR1	ENST00000381539	human	ensembl	74_37	+1	known	missense	c.533	p.S178F	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Vasoprsn_rcpt	-	no_errors	NPSR1	HGNC	ENSG00000187258				79	0	0	76	5	6.17284
STEAP4	0	genome.wustl.edu	37	7	87913437	87913437	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	7	87913437	87913437	G	A	SNP	STEAP4	ENST00000380079	human	ensembl	74_37	-1	known	nonsense	c.148	p.R50*	1.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP4	HGNC	ENSG00000127954				81	0	0	104	8	7.14286
ZNF804B	0	genome.wustl.edu	37	7	88963039	88963039	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	7	88963039	88963039	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.743	p.C248Y	0.998	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				45	0	0	42	5	10.6383
TBC1D31	0	genome.wustl.edu	37	8	124096483	124096483	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	124096483	124096483	C	T	SNP	TBC1D31	ENST00000287380	human	ensembl	74_37	+1	known	missense	c.422	p.A141V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	TBC1D31	HGNC	ENSG00000156787				128	0	0	119	21	15
PLEC	0	genome.wustl.edu	37	8	144993544	144993544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	144993544	144993544	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.10856	p.R3619H	0.999	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				102	0	0	86	12	12.2449
PLEC	0	genome.wustl.edu	37	8	145016602	145016602	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	145016602	145016602	G	A	SNP	PLEC	ENST00000357649	human	ensembl	74_37	-1	known	missense	c.82	p.P28S	0.487	superfamily_CH-domain	pfam_Plectin_repeat,pfam_CH-domain,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				27	0	0	23	2	8
SLC7A2	0	genome.wustl.edu	37	8	17415834	17415834	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	17415834	17415834	C	T	SNP	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	missense	c.1346	p.A449V	0.996	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989				81	0	0	88	5	5.37634
SNAI2	0	genome.wustl.edu	37	8	49832989	49832989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	49832989	49832989	G	A	SNP	SNAI2	ENST00000020945	human	ensembl	74_37	-1	known	missense	c.91	p.P31S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SNAI2	HGNC	ENSG00000019549				127	0	0	97	15	13.3929
KCNB2	0	genome.wustl.edu	37	8	73850023	73850023	+	Silent	SNP	C	C	T			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	73850023	73850023	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	silent	c.2433	p.D811	0.996	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				57	0	0	54	7	11.4754
KIAA1429	0	genome.wustl.edu	37	8	95500939	95500939	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	95500939	95500939	G	A	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	nonsense	c.5434	p.R1812*	0.998	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				184	0	0	187	20	9.66184
GDF6	0	genome.wustl.edu	37	8	97172648	97172648	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	8	97172648	97172648	G	A	SNP	GDF6	ENST00000287020	human	ensembl	74_37	-1	known	silent	c.273	p.R91	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF6	HGNC	ENSG00000156466				142	0	0	92	13	12.381
COL15A1	0	genome.wustl.edu	37	9	101749597	101749597	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	9	101749597	101749597	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.670	p.V224M	0.048	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				258	0	0	202	19	8.59729
NOTCH1	0	genome.wustl.edu	37	9	139391716	139391716	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	9	139391716	139391716	G	A	SNP	NOTCH1	ENST00000277541	human	ensembl	74_37	-1	known	missense	c.6475	p.R2159C	1.000	pirsf_Notch	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_EGF_extracell,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_1,prints_Notch_dom	-	no_errors	NOTCH1	HGNC	ENSG00000148400				58	0	0	38	5	11.6279
PTPRD	0	genome.wustl.edu	37	9	8521482	8521482	+	Silent	SNP	G	G	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	9	8521482	8521482	G	A	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.756	p.S252	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				105	0	0	86	13	13.1313
PASD1	0	genome.wustl.edu	37	X	150773161	150773161	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	X	150773161	150773161	T	G	SNP	PASD1	ENST00000370357	human	ensembl	74_37	+1	known	missense	c.72	p.I24M	0.000	NULL	superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PASD1	HGNC	ENSG00000166049				17	0	0	14	3	17.6471
PCDH11Y	0	genome.wustl.edu	37	Y	4925448	4925448	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	Y	4925448	4925448	C	A	SNP	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	missense	c.584	p.A195D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715				49	0	0	39	13	25
PLEKHA5	0	genome.wustl.edu	37	12	19460408	19460408	+	RNA	DEL	A	A	-			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	12	19460408	19460408	A	-	DEL	PLEKHA5	ENST00000510738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.931	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				25	0	0	18	2	10
DLGAP1-AS1	0	genome.wustl.edu	37	18	3597090	3597090	+	RNA	DEL	T	T	-			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	18	3597090	3597090	T	-	DEL	DLGAP1-AS1	ENST00000317114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DLGAP1-AS1	HGNC	ENSG00000177337				38	0	0	34	5	12.8205
PLSCR1	0	genome.wustl.edu	37	3	146234963	146234963	+	RNA	DEL	A	A	-			TCGA-BR-A4J7-01A-31D-A25D-08	TCGA-BR-A4J7-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e358b764-e5be-4a59-b170-7b2fbac78c87	ccdd1844-901d-4cc3-bf77-b9552021fcd0	3	146234963	146234963	A	-	DEL	PLSCR1	ENST00000484560	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.163	-	-	-	no_errors	PLSCR1	HGNC	ENSG00000188313				34	0	0	32	4	11.1111
