Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NPPB	0	genome.wustl.edu	37	1	11918406	11918406	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	11918406	11918406	C	T	SNP	NPPB	ENST00000376468	human	ensembl	74_37	-1	known	missense	c.253	p.E85K	0.000	NULL	pfam_Natr_peptide,smart_Natr_peptide,prints_Natriuretic_peptide_brain	-	no_errors	NPPB	HGNC	ENSG00000120937				62	0	0	56	8	12.5
LOC100996735	0	genome.wustl.edu	37	1	148932835	148932835	+	RNA	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	148932835	148932835	C	T	SNP	LOC100996735	ENST00000294715	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.150	-	-	-	no_errors	RP11-14N7.2	Clone_based_vega_gene	ENSG00000232527				152	1	0.653595	130	7	5.10949
S100A9	0	genome.wustl.edu	37	1	153333228	153333228	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	153333228	153333228	A	C	SNP	S100A9	ENST00000368738	human	ensembl	74_37	+1	known	missense	c.259	p.T87P	0.014	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100A9	HGNC	ENSG00000163220				54	0	0	53	8	13.1148
APOA1BP	0	genome.wustl.edu	37	1	156563293	156563293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	156563293	156563293	C	T	SNP	APOA1BP	ENST00000368234	human	ensembl	74_37	+1	known	missense	c.554	p.P185L	1.000	NULL	pfam_YjeF_N_dom,superfamily_YjeF_N_dom	-	no_errors	APOA1BP	HGNC	ENSG00000163382				102	0	0	76	13	14.6067
FAM20B	0	genome.wustl.edu	37	1	179033214	179033214	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	179033214	179033214	C	T	SNP	FAM20B	ENST00000263733	human	ensembl	74_37	+1	known	nonsense	c.727	p.R243*	1.000	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20B	HGNC	ENSG00000116199				92	0	0	60	42	41.1765
KCNT2	0	genome.wustl.edu	37	1	196227293	196227293	+	RNA	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	196227293	196227293	C	A	SNP	KCNT2	ENST00000610076	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	KCNT2	HGNC	ENSG00000162687				50	0	0	48	9	15.7895
CFH	0	genome.wustl.edu	37	1	196642297	196642297	+	RNA	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	196642297	196642297	A	C	SNP	CFH	ENST00000496761	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CFH	HGNC	ENSG00000000971				64	0	0	83	11	11.7021
URB2	0	genome.wustl.edu	37	1	229771163	229771163	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	229771163	229771163	C	T	SNP	URB2	ENST00000258243	human	ensembl	74_37	+1	known	missense	c.803	p.T268M	0.606	NULL	pfam_Urb2/Npa2_C	-	no_errors	URB2	HGNC	ENSG00000135763				74	0	0	51	40	43.956
NID1	0	genome.wustl.edu	37	1	236175230	236175230	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	236175230	236175230	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.2518	p.V840M	0.178	superfamily_Thyroglobulin_1,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				122	1	0.813008	122	9	6.87023
EXO1	0	genome.wustl.edu	37	1	242021853	242021853	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	242021853	242021853	C	T	SNP	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	nonsense	c.589	p.Q197*	1.000	pfam_XPG-I_dom,smart_XPG-I_dom	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371				138	0	0	148	14	8.64198
SNRNP40	0	genome.wustl.edu	37	1	31764770	31764770	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	31764770	31764770	T	C	SNP	SNRNP40	ENST00000446633	human	ensembl	74_37	-1	known	missense	c.355	p.T119A	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SNRNP40	HGNC	ENSG00000060688				55	0	0	76	5	6.17284
GPR153	0	genome.wustl.edu	37	1	6314867	6314867	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	6314867	6314867	G	A	SNP	GPR153	ENST00000377893	human	ensembl	74_37	-1	known	silent	c.99	p.G33	0.656	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GCR_153/162	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR153,prints_GCR_153/162	-	no_errors	GPR153	HGNC	ENSG00000158292				90	0	0	83	9	9.78261
LEPR	0	genome.wustl.edu	37	1	66101896	66101896	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	66101896	66101896	T	C	SNP	LEPR	ENST00000349533	human	ensembl	74_37	+1	known	missense	c.2696	p.F899S	1.000	NULL	pfam_IgC2-like_lig-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LEPR	HGNC	ENSG00000116678				189	0	0	181	13	6.70103
PTGFR	0	genome.wustl.edu	37	1	78958507	78958507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	78958507	78958507	C	T	SNP	PTGFR	ENST00000370757	human	ensembl	74_37	+1	known	missense	c.79	p.R27W	0.983	prints_PglndnF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_PglndnF_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGFR	HGNC	ENSG00000122420				97	0	0	96	8	7.69231
RBP3	0	genome.wustl.edu	37	10	48388253	48388253	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	10	48388253	48388253	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	silent	c.2625	p.G875	0.221	pfam_Interphotoreceptor_retinol-bd,smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				43	0	0	26	16	38.0952
GRIA4	0	genome.wustl.edu	37	11	105795326	105795326	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	105795326	105795326	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	74_37	+1	known	missense	c.1678	p.V560M	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578				46	0	0	45	13	22.4138
SRPR	0	genome.wustl.edu	37	11	126137202	126137202	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	126137202	126137202	C	T	SNP	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	missense	c.394	p.A132T	1.000	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				119	0	0	98	7	6.66667
MUC5B	0	genome.wustl.edu	37	11	1271245	1271245	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	1271245	1271245	A	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.13144	p.T4382P	0.004	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				171	1	0.581395	108	23	17.5573
ADAMTS15	0	genome.wustl.edu	37	11	130331473	130331473	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	130331473	130331473	G	T	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	missense	c.1047	p.E349D	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106				101	0	0	72	9	11.1111
MRGPRX2	0	genome.wustl.edu	37	11	19077528	19077528	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	19077528	19077528	C	T	SNP	MRGPRX2	ENST00000329773	human	ensembl	74_37	-1	known	missense	c.422	p.R141H	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX2	HGNC	ENSG00000183695				80	0	0	64	9	12.3288
RAG1	0	genome.wustl.edu	37	11	36597806	36597806	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	36597806	36597806	C	G	SNP	RAG1	ENST00000299440	human	ensembl	74_37	+1	known	missense	c.2952	p.C984W	1.000	NULL	pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RAG1	HGNC	ENSG00000166349				102	0	0	103	9	8.03571
OR52K1	0	genome.wustl.edu	37	11	4511022	4511022	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	4511022	4511022	A	T	SNP	OR52K1	ENST00000307632	human	ensembl	74_37	+1	known	missense	c.892	p.T298S	1.000	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52K1	HGNC	ENSG00000196778				152	1	0.653595	127	27	17.5325
OR51A2	0	genome.wustl.edu	37	11	4976013	4976013	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	4976013	4976013	A	G	SNP	OR51A2	ENST00000380371	human	ensembl	74_37	-1	known	missense	c.931	p.W311R	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A2	HGNC	ENSG00000205496				75	0	0	22	7	24.1379
OR56B1	0	genome.wustl.edu	37	11	5758490	5758490	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	5758490	5758490	C	A	SNP	OR56B1	ENST00000317121	human	ensembl	74_37	+1	known	missense	c.744	p.S248R	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR56B1	HGNC	ENSG00000181023				146	0	0	146	19	11.5152
OR5B2	0	genome.wustl.edu	37	11	58189993	58189993	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	58189993	58189993	C	T	SNP	OR5B2	ENST00000302581	human	ensembl	74_37	-1	known	missense	c.742	p.V248I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5B2	HGNC	ENSG00000172365				55	0	0	39	6	13.3333
LPXN	0	genome.wustl.edu	37	11	58318648	58318648	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	58318648	58318648	C	A	SNP	LPXN	ENST00000528954	human	ensembl	74_37	-1	known	missense	c.391	p.A131S	0.511	pirsf_Leupaxin	pfam_Znf_LIM,smart_Znf_LIM,pirsf_Leupaxin,pfscan_Znf_LIM	-	no_errors	LPXN	HGNC	ENSG00000110031				38	0	0	28	9	24.3243
AHNAK	0	genome.wustl.edu	37	11	62297320	62297320	+	Silent	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	62297320	62297320	A	G	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	silent	c.4569	p.F1523	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				329	0	0	208	52	20
RASGRP2	0	genome.wustl.edu	37	11	64503430	64503430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	64503430	64503430	G	A	SNP	RASGRP2	ENST00000377494	human	ensembl	74_37	-1	known	missense	c.1118	p.T373M	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831				35	0	0	39	4	9.30233
MALAT1	0	genome.wustl.edu	37	11	65269751	65269751	+	RNA	SNP	T	T	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	11	65269751	65269751	T	A	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				29	0	0	16	3	15.7895
PLBD2	0	genome.wustl.edu	37	12	113821937	113821937	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	12	113821937	113821937	A	T	SNP	PLBD2	ENST00000280800	human	ensembl	74_37	+1	known	nonsense	c.985	p.K329*	0.994	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD2	HGNC	ENSG00000151176				59	0	0	32	10	23.8095
CCND2	0	genome.wustl.edu	37	12	4388038	4388038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	12	4388038	4388038	C	T	SNP	CCND2	ENST00000261254	human	ensembl	74_37	+1	known	missense	c.524	p.S175F	0.871	pfam_Cyclin_C-dom,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND2	HGNC	ENSG00000118971				65	0	0	30	4	11.7647
KRT72	0	genome.wustl.edu	37	12	52981611	52981611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	12	52981611	52981611	C	T	SNP	KRT72	ENST00000293745	human	ensembl	74_37	-1	known	missense	c.1114	p.A372T	0.691	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT72	HGNC	ENSG00000170486				47	0	0	32	4	11.1111
OR6C2	0	genome.wustl.edu	37	12	55846401	55846401	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	12	55846401	55846401	A	G	SNP	OR6C2	ENST00000322678	human	ensembl	74_37	+1	known	missense	c.404	p.N135S	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695				119	0	0	103	11	9.64912
E2F7	0	genome.wustl.edu	37	12	77449854	77449854	+	Silent	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	12	77449854	77449854	T	C	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	silent	c.150	p.E50	0.998	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891				73	0	0	63	17	21.25
STARD13	0	genome.wustl.edu	37	13	33741704	33741704	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	13	33741704	33741704	G	A	SNP	STARD13	ENST00000336934	human	ensembl	74_37	-1	known	silent	c.225	p.Y75	1.000	pfam_SAM_2,superfamily_SAM/pointed	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	STARD13	HGNC	ENSG00000133121				98	0	0	77	5	6.09756
SLITRK6	0	genome.wustl.edu	37	13	86368299	86368299	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	13	86368299	86368299	A	G	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.2345	p.L782P	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564				125	0	0	152	9	5.59006
TTLL5	0	genome.wustl.edu	37	14	76149995	76149995	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	14	76149995	76149995	C	G	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.367	p.P123A	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				82	0	0	36	38	51.3514
CATSPERB	0	genome.wustl.edu	37	14	92195816	92195816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	14	92195816	92195816	G	A	SNP	CATSPERB	ENST00000256343	human	ensembl	74_37	-1	known	missense	c.8	p.S3L	0.000	NULL	superfamily_Sialidases	-	no_errors	CATSPERB	HGNC	ENSG00000133962				31	0	0	23	3	11.5385
DYX1C1	0	genome.wustl.edu	37	15	55742448	55742448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	15	55742448	55742448	C	T	SNP	DYX1C1	ENST00000321149	human	ensembl	74_37	-1	known	missense	c.755	p.R252H	1.000	NULL	pfam_TPR_1,pfam_CS_dom,superfamily_HSP20-like_chaperone,smart_TPR_repeat,pfscan_CS_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	DYX1C1	HGNC	ENSG00000256061				82	0	0	45	14	23.7288
PEAK1	0	genome.wustl.edu	37	15	77472426	77472426	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	15	77472426	77472426	T	C	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.1843	p.T615A	0.109	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517				119	0	0	84	40	32.2581
CIITA	0	genome.wustl.edu	37	16	11001727	11001727	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	16	11001727	11001727	T	A	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.2378	p.L793Q	0.877	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583				86	0	0	73	13	15.1163
TELO2	0	genome.wustl.edu	37	16	1552705	1552705	+	Silent	SNP	A	A	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	16	1552705	1552705	A	T	SNP	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	silent	c.1713	p.G571	0.078	pfam_Telomere_length_regulation_dom	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726				228	0	0	161	35	17.8571
AXIN1	0	genome.wustl.edu	37	16	354351	354351	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	16	354351	354351	G	A	SNP	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	missense	c.1207	p.R403W	0.910	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				58	0	0	61	4	6.15385
GPT2	0	genome.wustl.edu	37	16	46960947	46960947	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	16	46960947	46960947	C	T	SNP	GPT2	ENST00000340124	human	ensembl	74_37	+1	known	silent	c.1479	p.F493	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GPT2	HGNC	ENSG00000166123				85	0	0	63	14	18.1818
PLCG2	0	genome.wustl.edu	37	16	81944245	81944245	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	16	81944245	81944245	C	T	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	silent	c.1854	p.R618	0.010	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				276	0	0	266	17	6.00707
TOM1L2	0	genome.wustl.edu	37	17	17787971	17787971	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	17787971	17787971	A	C	SNP	TOM1L2	ENST00000379504	human	ensembl	74_37	-1	known	missense	c.478	p.S160A	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L2	HGNC	ENSG00000175662				143	0	0	98	8	7.54717
MYO15A	0	genome.wustl.edu	37	17	18023036	18023036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	18023036	18023036	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.922	p.G308S	0.996	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				152	0	0	75	10	11.7647
KCNJ12	0	genome.wustl.edu	37	17	21318662	21318662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	21318662	21318662	C	T	SNP	KCNJ12	ENST00000331718	human	ensembl	74_37	+1	known	missense	c.8	p.A3V	0.628	pfam_K_chnl_inward-rec_Kir_N,prints_K_chnl_inward-rec_Kir2.2	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.2	-	no_errors	KCNJ12	HGNC	ENSG00000184185				52	0	0	44	4	8.33333
FZD2	0	genome.wustl.edu	37	17	42636454	42636454	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	42636454	42636454	C	T	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	silent	c.1398	p.S466	0.992	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				74	0	0	38	18	32.1429
C17orf104	0	genome.wustl.edu	37	17	42744852	42744852	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	42744852	42744852	T	G	SNP	C17orf104	ENST00000409122	human	ensembl	74_37	+1	known	missense	c.1573	p.L525V	1.000	NULL	NULL	-	no_errors	C17orf104	HGNC	ENSG00000180336				42	0	0	30	5	14.2857
MARCH10	0	genome.wustl.edu	37	17	60813998	60813998	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	60813998	60813998	G	T	SNP	MARCH10	ENST00000311269	human	ensembl	74_37	-1	known	missense	c.1231	p.Q411K	0.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH10	HGNC	ENSG00000173838				121	0	0	78	11	12.3596
KCNJ2	0	genome.wustl.edu	37	17	68172062	68172062	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	68172062	68172062	C	T	SNP	KCNJ2	ENST00000243457	human	ensembl	74_37	+1	known	silent	c.882	p.I294	0.018	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700				83	0	0	62	13	17.3333
KLHL14	0	genome.wustl.edu	37	18	30350466	30350466	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	18	30350466	30350466	T	A	SNP	KLHL14	ENST00000359358	human	ensembl	74_37	-1	known	missense	c.89	p.Q30L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL14	HGNC	ENSG00000197705				93	0	0	47	18	27.6923
CELF4	0	genome.wustl.edu	37	18	34833736	34833736	+	RNA	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	18	34833736	34833736	G	A	SNP	CELF4	ENST00000590011	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	CELF4	HGNC	ENSG00000101489				58	0	0	24	7	22.5806
EPB41L3	0	genome.wustl.edu	37	18	5397408	5397408	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	18	5397408	5397408	C	T	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	silent	c.2490	p.T830	0.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				94	0	0	92	13	12.381
CDH20	0	genome.wustl.edu	37	18	59166663	59166663	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	18	59166663	59166663	A	C	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	missense	c.491	p.K164T	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				48	0	0	33	11	25
ANKRD12	0	genome.wustl.edu	37	18	9258528	9258528	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	18	9258528	9258528	A	G	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.5263	p.T1755A	0.006	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				43	0	0	59	6	9.23077
DDX39A	0	genome.wustl.edu	37	19	14522340	14522340	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	19	14522340	14522340	G	A	SNP	DDX39A	ENST00000242776	human	ensembl	74_37	-1	known	missense	c.407	p.S136F	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX39A	HGNC	ENSG00000123136				76	0	0	67	16	19.2771
ZNF91	0	genome.wustl.edu	37	19	23542926	23542926	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	19	23542926	23542926	G	T	SNP	ZNF91	ENST00000300619	human	ensembl	74_37	-1	known	missense	c.2855	p.T952N	0.006	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF91	HGNC	ENSG00000167232				65	0	0	73	5	6.41026
PSG7	0	genome.wustl.edu	37	19	43441313	43441313	+	RNA	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	19	43441313	43441313	C	T	SNP	PSG7	ENST00000471557	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.504	-	-	-	no_errors	PSG7	HGNC	ENSG00000221878				39	0	0	39	3	7.14286
OR1M1	0	genome.wustl.edu	37	19	9204308	9204308	+	Silent	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	19	9204308	9204308	T	C	SNP	OR1M1	ENST00000429566	human	ensembl	74_37	+1	known	silent	c.388	p.L130	0.020	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929				121	0	0	92	21	18.5841
POTEF	0	genome.wustl.edu	37	2	130832927	130832927	+	Silent	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	130832927	130832927	A	G	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	silent	c.2118	p.A706	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				27	0	0	5	5	50
POTEF	0	genome.wustl.edu	37	2	130877735	130877735	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	130877735	130877735	G	A	SNP	POTEF	ENST00000357462	human	ensembl	74_37	-1	known	silent	c.354	p.G118	0.002	NULL	pfam_Actin-related,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-related,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-related	-	no_errors	POTEF	HGNC	ENSG00000196604				96	0	0	100	10	9.09091
TMEM163	0	genome.wustl.edu	37	2	135309655	135309655	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	135309655	135309655	G	A	SNP	TMEM163	ENST00000281924	human	ensembl	74_37	-1	known	silent	c.330	p.S110	1.000	NULL	NULL	-	no_errors	TMEM163	HGNC	ENSG00000152128				53	0	0	48	5	9.43396
DFNB59	0	genome.wustl.edu	37	2	179325944	179325944	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	179325944	179325944	G	A	SNP	DFNB59	ENST00000375129	human	ensembl	74_37	+1	known	silent	c.1002	p.K334	1.000	NULL	pfam_Gasdermin	-	no_errors	DFNB59	HGNC	ENSG00000204311				180	0	0	130	56	30.1075
TTN	0	genome.wustl.edu	37	2	179593239	179593239	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	179593239	179593239	A	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.15682	p.L5228V	0.998	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				26	0	0	28	3	9.67742
FSIP2	0	genome.wustl.edu	37	2	186673555	186673555	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	186673555	186673555	T	G	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.19789	p.L6597V	0.004	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				60	0	0	59	12	16.9014
ERBB4	0	genome.wustl.edu	37	2	212576825	212576825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	212576825	212576825	G	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1074	p.N358K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568				51	0	0	57	7	10.9375
EIF2B4	0	genome.wustl.edu	37	2	27587343	27587343	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	27587343	27587343	A	G	SNP	EIF2B4	ENST00000347454	human	ensembl	74_37	-1	known	missense	c.1496	p.L499P	0.999	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B4	HGNC	ENSG00000115211				85	0	0	61	26	29.8851
SNRNP200	0	genome.wustl.edu	37	2	96967313	96967313	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	2	96967313	96967313	G	A	SNP	SNRNP200	ENST00000323853	human	ensembl	74_37	-1	known	silent	c.523	p.L175	0.965	NULL	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028				260	1	0.383142	97	154	61.3546
RALGAPB	0	genome.wustl.edu	37	20	37203564	37203564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	20	37203564	37203564	A	G	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.4439	p.Y1480C	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471				97	0	0	82	78	48.75
ZNFX1	0	genome.wustl.edu	37	20	47881369	47881369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	20	47881369	47881369	G	A	SNP	ZNFX1	ENST00000371752	human	ensembl	74_37	-1	known	missense	c.2035	p.R679W	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201				130	0	0	168	27	13.8462
EEF1A2	0	genome.wustl.edu	37	20	62126332	62126332	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	20	62126332	62126332	G	A	SNP	EEF1A2	ENST00000217182	human	ensembl	74_37	-1	known	silent	c.447	p.I149	0.996	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A2	HGNC	ENSG00000101210				127	0	0	164	13	7.34463
IGLL1	0	genome.wustl.edu	37	22	23915718	23915718	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	22	23915718	23915718	A	G	SNP	IGLL1	ENST00000330377	human	ensembl	74_37	-1	known	missense	c.377	p.L126P	0.802	pfam_Ig_C1-set,pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	IGLL1	HGNC	ENSG00000128322				97	0	0	89	5	5.31915
TCN2	0	genome.wustl.edu	37	22	31022488	31022488	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	22	31022488	31022488	C	T	SNP	TCN2	ENST00000215838	human	ensembl	74_37	+1	known	silent	c.1264	p.L422	0.994	NULL	pfam_Cbl-bd_transpt_euk,superfamily_Terpenoid_cyclase/PrenylTrfase	-	no_errors	TCN2	HGNC	ENSG00000185339				64	0	0	66	5	7.04225
PHLDB2	0	genome.wustl.edu	37	3	111667811	111667811	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	3	111667811	111667811	G	A	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	silent	c.2520	p.P840	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824				66	0	0	51	5	8.92857
POGLUT1	0	genome.wustl.edu	37	3	119209420	119209420	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	3	119209420	119209420	G	A	SNP	POGLUT1	ENST00000295588	human	ensembl	74_37	+1	known	missense	c.820	p.V274I	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,smart_LipoPS_modifying	-	no_errors	POGLUT1	HGNC	ENSG00000163389				95	0	0	63	28	30.7692
DNAJC13	0	genome.wustl.edu	37	3	132172210	132172210	+	Silent	SNP	A	A	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	3	132172210	132172210	A	C	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	silent	c.606	p.I202	0.998	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				52	0	0	36	3	7.69231
PDZRN3	0	genome.wustl.edu	37	3	73432887	73432887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	3	73432887	73432887	G	A	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	missense	c.2830	p.R944W	1.000	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				64	0	0	38	12	24
LOC401127	0	genome.wustl.edu	37	4	39482848	39482848	+	RNA	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	4	39482848	39482848	A	G	SNP	LOC401127	ENST00000513652	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-472B18.1	Clone_based_vega_gene	ENSG00000224097				83	0	0	58	4	6.45161
STX18	0	genome.wustl.edu	37	4	4543685	4543685	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	4	4543685	4543685	C	T	SNP	STX18	ENST00000306200	human	ensembl	74_37	-1	known	missense	c.7	p.V3M	1.000	NULL	pfam_Syntaxin-18_N	-	no_errors	STX18	HGNC	ENSG00000168818				21	0	0	14	3	17.6471
AFM	0	genome.wustl.edu	37	4	74367522	74367522	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	4	74367522	74367522	G	A	SNP	AFM	ENST00000226355	human	ensembl	74_37	+1	known	silent	c.1665	p.V555	0.464	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557				29	0	0	11	3	21.4286
BMP3	0	genome.wustl.edu	37	4	81967172	81967172	+	Silent	SNP	T	T	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	4	81967172	81967172	T	A	SNP	BMP3	ENST00000282701	human	ensembl	74_37	+1	known	silent	c.597	p.S199	1.000	pfam_TGF-b_N,pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	BMP3	HGNC	ENSG00000152785				157	0	0	116	10	7.93651
SH3TC1	0	genome.wustl.edu	37	4	8229026	8229026	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	4	8229026	8229026	C	T	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	silent	c.1605	p.D535	0.007	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				20	0	0	9	6	40
PDLIM4	0	genome.wustl.edu	37	5	131607859	131607859	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	131607859	131607859	G	A	SNP	PDLIM4	ENST00000253754	human	ensembl	74_37	+1	known	silent	c.930	p.V310	1.000	pfscan_Znf_LIM	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM4	HGNC	ENSG00000131435				46	0	0	42	8	16
APBB3	0	genome.wustl.edu	37	5	139938226	139938226	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	139938226	139938226	C	T	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.1420	p.V474I	0.782	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				142	0	0	100	17	14.5299
SOX30	0	genome.wustl.edu	37	5	157073806	157073806	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	157073806	157073806	C	T	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.1226	p.R409H	1.000	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				85	0	0	81	6	6.89655
SPDL1	0	genome.wustl.edu	37	5	169021405	169021405	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	169021405	169021405	G	A	SNP	SPDL1	ENST00000265295	human	ensembl	74_37	+1	known	missense	c.689	p.R230H	1.000	NULL	NULL	-	no_errors	SPDL1	HGNC	ENSG00000040275				81	0	0	70	6	7.89474
ADAMTS2	0	genome.wustl.edu	37	5	178548684	178548684	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	178548684	178548684	C	T	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.3156	p.S1052	0.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				432	0	0	259	71	21.5152
NPR3	0	genome.wustl.edu	37	5	32724837	32724837	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	32724837	32724837	G	A	SNP	NPR3	ENST00000265074	human	ensembl	74_37	+1	known	missense	c.803	p.R268Q	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_Ntpep_rcpt	-	no_errors	NPR3	HGNC	ENSG00000113389				60	0	0	34	11	24.4444
ERBB2IP	0	genome.wustl.edu	37	5	65349645	65349645	+	Silent	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	65349645	65349645	T	C	SNP	ERBB2IP	ENST00000284037	human	ensembl	74_37	+1	known	silent	c.2499	p.P833	0.021	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851				49	0	0	38	8	17.3913
NR2F1	0	genome.wustl.edu	37	5	92923833	92923833	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	5	92923833	92923833	G	A	SNP	NR2F1	ENST00000327111	human	ensembl	74_37	+1	known	missense	c.674	p.R225H	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_COUP_TF,prints_Str_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F1	HGNC	ENSG00000175745				104	0	0	76	4	5
BVES	0	genome.wustl.edu	37	6	105573419	105573419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	105573419	105573419	C	T	SNP	BVES	ENST00000314641	human	ensembl	74_37	-1	known	missense	c.386	p.R129Q	1.000	pfam_Popeye_prot	pfam_Popeye_prot,superfamily_cNMP-bd-like	-	no_errors	BVES	HGNC	ENSG00000112276				94	0	0	75	11	12.7907
DDO	0	genome.wustl.edu	37	6	110729555	110729555	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	110729555	110729555	C	G	SNP	DDO	ENST00000368924	human	ensembl	74_37	-1	known	missense	c.347	p.G116A	1.000	pfam_FAD-dep_OxRdtase	pfam_FAD-dep_OxRdtase	-	no_errors	DDO	HGNC	ENSG00000203797				81	0	0	58	6	9.375
KIAA0408	0	genome.wustl.edu	37	6	127768472	127768472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	127768472	127768472	G	A	SNP	KIAA0408	ENST00000483725	human	ensembl	74_37	-1	novel	missense	c.992	p.S331L	0.994	NULL	NULL	-	no_errors	KIAA0408	HGNC	ENSG00000189367				92	0	0	41	6	12.766
MYLK4	0	genome.wustl.edu	37	6	2679676	2679676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	2679676	2679676	G	A	SNP	MYLK4	ENST00000268446	human	ensembl	74_37	-1	known	missense	c.725	p.T242M	0.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949				139	0	0	87	6	6.45161
SLC44A4	0	genome.wustl.edu	37	6	31839132	31839132	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	31839132	31839132	C	A	SNP	SLC44A4	ENST00000229729	human	ensembl	74_37	-1	known	missense	c.660	p.K220N	0.998	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A4	HGNC	ENSG00000204385				129	0	0	46	24	34.2857
DST	0	genome.wustl.edu	37	6	56392430	56392430	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	56392430	56392430	G	A	SNP	DST	ENST00000370754	human	ensembl	74_37	-1	known	missense	c.17690	p.A5897V	0.997	superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914				36	0	0	22	7	24.1379
DSP	0	genome.wustl.edu	37	6	7586000	7586000	+	Silent	SNP	C	C	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	6	7586000	7586000	C	G	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.8505	p.S2835	0.033	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				109	0	0	55	23	29.4872
LEP	0	genome.wustl.edu	37	7	127894645	127894645	+	Silent	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	7	127894645	127894645	G	T	SNP	LEP	ENST00000308868	human	ensembl	74_37	+1	known	silent	c.333	p.L111	0.995	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	pfam_Leptin,superfamily_4_helix_cytokine-like_core,pirsf_Leptin,prints_Leptin	-	no_errors	LEP	HGNC	ENSG00000174697				73	0	0	85	14	14.1414
CARD11	0	genome.wustl.edu	37	7	2977628	2977628	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	7	2977628	2977628	C	T	SNP	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	silent	c.1056	p.S352	0.854	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				122	0	0	157	28	15.1351
ELMO1	0	genome.wustl.edu	37	7	37283994	37283994	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	7	37283994	37283994	C	T	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.416	p.R139Q	1.000	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849				120	0	0	164	11	6.28571
ZNF733P	0	genome.wustl.edu	37	7	62752790	62752790	+	RNA	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	7	62752790	62752790	G	A	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037				16	0	0	28	10	26.3158
SLC35G5	0	genome.wustl.edu	37	8	11188977	11188977	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	8	11188977	11188977	C	A	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.362	p.A121E	0.885	pfam_DMT	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710				268	2	0.740741	167	31	15.6566
TOX	0	genome.wustl.edu	37	8	59764183	59764183	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	8	59764183	59764183	C	A	SNP	TOX	ENST00000361421	human	ensembl	74_37	-1	known	missense	c.593	p.S198I	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX	HGNC	ENSG00000198846				49	0	0	34	23	40.3509
SULF1	0	genome.wustl.edu	37	8	70515533	70515533	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	8	70515533	70515533	G	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	missense	c.1168	p.D390Y	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573				107	1	0.925926	96	9	8.57143
DECR1	0	genome.wustl.edu	37	8	91063919	91063919	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	8	91063919	91063919	C	T	SNP	DECR1	ENST00000220764	human	ensembl	74_37	+1	known	silent	c.900	p.D300	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	DECR1	HGNC	ENSG00000104325				31	0	0	16	10	38.4615
PRPF4	0	genome.wustl.edu	37	9	116041256	116041256	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	9	116041256	116041256	C	T	SNP	PRPF4	ENST00000374198	human	ensembl	74_37	+1	known	silent	c.240	p.S80	1.000	NULL	pfam_WD40_repeat,pfam_PRP4-like,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875				126	0	0	63	12	16
SETX	0	genome.wustl.edu	37	9	135173685	135173685	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	9	135173685	135173685	T	C	SNP	SETX	ENST00000372169	human	ensembl	74_37	-1	known	missense	c.5563	p.T1855A	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SETX	HGNC	ENSG00000107290				60	0	0	48	5	9.43396
NSMF	0	genome.wustl.edu	37	9	140343924	140343924	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	9	140343924	140343924	C	T	SNP	NSMF	ENST00000371475	human	ensembl	74_37	-1	known	silent	c.1515	p.T505	0.972	NULL	superfamily_P-loop_NTPase	-	no_errors	NSMF	HGNC	ENSG00000165802				68	0	0	48	6	11.1111
PRUNE2	0	genome.wustl.edu	37	9	79441533	79441533	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	9	79441533	79441533	G	A	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	silent	c.624	p.I208	0.987	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				162	0	0	93	27	22.5
DCAF12L2	0	genome.wustl.edu	37	X	125299308	125299308	+	Silent	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	125299308	125299308	G	A	SNP	DCAF12L2	ENST00000360028	human	ensembl	74_37	-1	known	silent	c.600	p.V200	0.966	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L2	HGNC	ENSG00000198354				69	0	0	48	10	17.2414
GPR112	0	genome.wustl.edu	37	X	135426978	135426978	+	Silent	SNP	T	T	C			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	135426978	135426978	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.1113	p.S371	0.033	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				59	0	0	33	28	45.9016
MAGEA10	0	genome.wustl.edu	37	X	151303075	151303075	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	151303075	151303075	T	A	SNP	MAGEA10	ENST00000244096	human	ensembl	74_37	-1	known	nonsense	c.1018	p.R340*	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA10	HGNC	ENSG00000124260				219	0	0	120	49	28.9941
GABRQ	0	genome.wustl.edu	37	X	151820033	151820033	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	151820033	151820033	C	T	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	missense	c.946	p.R316W	0.998	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				135	0	0	63	55	46.6102
XK	0	genome.wustl.edu	37	X	37586943	37586943	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	37586943	37586943	A	G	SNP	XK	ENST00000378616	human	ensembl	74_37	+1	known	missense	c.563	p.N188S	1.000	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XK	HGNC	ENSG00000047597				60	0	0	48	6	11.1111
SHOX	0	genome.wustl.edu	37	X	601735	601735	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	601735	601735	C	T	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	silent	c.546	p.G182	0.989	superfamily_Homeodomain-like	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960				95	0	0	32	9	21.9512
RPS6KA6	0	genome.wustl.edu	37	X	83362033	83362033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	83362033	83362033	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1127	p.P376L	1.000	pfam_Pkinase_C,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				54	0	0	24	16	40
SHROOM2	0	genome.wustl.edu	37	X	9862716	9862716	+	Silent	SNP	C	C	T			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	X	9862716	9862716	C	T	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.768	p.G256	0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				26	0	0	22	3	12
ARID1A	0	genome.wustl.edu	37	1	27087887	27087905	+	Frame_Shift_Del	DEL	CACCTCGGCCACCCAGTGG	CACCTCGGCCACCCAGTGG	-			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	CACCTCGGCCACCCAGTGG	CACCTCGGCCACCCAGTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	1	27087887	27087905	CACCTCGGCCACCCAGTGG	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.2174_2192	p.P726fs	1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000:1.000:0.539:0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				124	0	0	51	14	21.5385
TP53	0	genome.wustl.edu	37	17	7578266	7578267	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4J8-01A-11D-A25D-08	TCGA-BR-A4J8-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	40a23613-19f9-4e3d-a90b-bc147f910427	2905bcb7-677a-4df3-bdf6-e134ef64213b	17	7578266	7578267	-	A	INS	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_ins	c.583_582	p.I194fs	0.999:0.484	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				52	0	0	29	25	46.2963
