Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AMY2A	0	genome.wustl.edu	37	1	104160603	104160603	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	104160603	104160603	A	G	SNP	AMY2A	ENST00000414303	human	ensembl	74_37	+1	known	missense	c.196	p.I66V	0.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480				64	0	0	44	79	64.2276
SEC22B	0	genome.wustl.edu	37	1	145112423	145112423	+	RNA	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	145112423	145112423	A	C	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380				70	0	0	77	8	9.41176
HRNR	0	genome.wustl.edu	37	1	152191301	152191301	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	152191301	152191301	T	C	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.2804	p.K935R	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				467	0	0	406	83	16.9734
FLG	0	genome.wustl.edu	37	1	152279828	152279828	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	152279828	152279828	T	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.7534	p.S2512R	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				532	0	0	535	98	15.4818
LCE1A	0	genome.wustl.edu	37	1	152800031	152800031	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	152800031	152800031	A	G	SNP	LCE1A	ENST00000335123	human	ensembl	74_37	+1	known	missense	c.83	p.K28R	0.171	NULL	NULL	-	no_errors	LCE1A	HGNC	ENSG00000186844				134	0	0	151	21	12.2093
IVL	0	genome.wustl.edu	37	1	152883259	152883259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	152883259	152883259	A	G	SNP	IVL	ENST00000368764	human	ensembl	74_37	+1	known	missense	c.986	p.Q329R	0.001	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207				10	0	0	8	4	33.3333
CD1E	0	genome.wustl.edu	37	1	158324361	158324361	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	158324361	158324361	T	G	SNP	CD1E	ENST00000368167	human	ensembl	74_37	+1	known	missense	c.253	p.F85V	0.879	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1E	HGNC	ENSG00000158488				62	0	0	51	11	17.7419
CACNA1E	0	genome.wustl.edu	37	1	181620513	181620513	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	181620513	181620513	T	G	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.991	p.F331V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				88	0	0	51	32	38.5542
LMOD1	0	genome.wustl.edu	37	1	201868803	201868803	+	Silent	SNP	G	G	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	201868803	201868803	G	T	SNP	LMOD1	ENST00000367288	human	ensembl	74_37	-1	known	silent	c.1338	p.T446	0.645	NULL	pfam_Tropomodulin,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	LMOD1	HGNC	ENSG00000163431				27	0	0	27	4	12.9032
OR2T29	0	genome.wustl.edu	37	1	248722752	248722752	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	248722752	248722752	A	G	SNP	OR2T29	ENST00000328570	human	ensembl	74_37	-1	known	missense	c.41	p.L14S	0.000	NULL	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR2T29	HGNC	ENSG00000182783				48	0	0	40	5	11.1111
SLC6A9	0	genome.wustl.edu	37	1	44467169	44467169	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	44467169	44467169	C	A	SNP	SLC6A9	ENST00000360584	human	ensembl	74_37	-1	known	missense	c.1312	p.G438C	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_glycine_GLY1	-	no_errors	SLC6A9	HGNC	ENSG00000196517				157	0	0	274	15	5.19031
NPHP4	0	genome.wustl.edu	37	1	5951034	5951034	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	1	5951034	5951034	C	T	SNP	NPHP4	ENST00000378156	human	ensembl	74_37	-1	known	missense	c.2198	p.G733D	1.000	NULL	NULL	-	no_errors	NPHP4	HGNC	ENSG00000131697				17	0	0	4	15	78.9474
WDR96	0	genome.wustl.edu	37	10	105967573	105967573	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	105967573	105967573	C	T	SNP	WDR96	ENST00000357060	human	ensembl	74_37	-1	known	missense	c.745	p.D249N	0.141	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	superfamily_WD40_repeat_dom,superfamily_Quino_amine_DH_bsu	-	no_errors	WDR96	HGNC	ENSG00000197748				75	0	0	48	19	28.3582
SORCS3	0	genome.wustl.edu	37	10	106974370	106974370	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	106974370	106974370	A	C	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.2546	p.E849A	1.000	pfam_PKD_dom,superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				41	0	0	24	11	31.4286
ADRA2A	0	genome.wustl.edu	37	10	112838845	112838845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	112838845	112838845	C	T	SNP	ADRA2A	ENST00000280155	human	ensembl	74_37	+1	known	missense	c.1091	p.P364L	0.044	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2A_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam,prints_Musac_Ach_rcpt	-	no_errors	ADRA2A	HGNC	ENSG00000150594				24	0	0	11	10	47.619
DMBT1	0	genome.wustl.edu	37	10	124377558	124377558	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	124377558	124377558	A	G	SNP	DMBT1	ENST00000338354	human	ensembl	74_37	+1	known	silent	c.4530	p.R1510	0.915	superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_CUB_dom,pfam_ZP_dom,superfamily_Srcr_rcpt-rel,superfamily_CUB_dom,smart_Srcr_rcpt-rel,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_SRCR,pfscan_ZP_dom,prints_SRCR	-	no_errors	DMBT1	HGNC	ENSG00000187908				519	1	0.192308	351	61	14.8058
ADAM12	0	genome.wustl.edu	37	10	127797193	127797193	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	127797193	127797193	C	T	SNP	ADAM12	ENST00000368679	human	ensembl	74_37	-1	known	missense	c.719	p.R240Q	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM12	HGNC	ENSG00000148848				61	0	0	24	7	22.5806
ARHGAP12	0	genome.wustl.edu	37	10	32197485	32197485	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	32197485	32197485	A	G	SNP	ARHGAP12	ENST00000344936	human	ensembl	74_37	-1	known	missense	c.299	p.L100P	0.994	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_SH3_domain,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP12	HGNC	ENSG00000165322				56	0	0	66	24	26.6667
DDX21	0	genome.wustl.edu	37	10	70733310	70733310	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	70733310	70733310	T	G	SNP	DDX21	ENST00000354185	human	ensembl	74_37	+1	known	missense	c.1558	p.S520A	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732				48	0	0	43	7	14
TRPC6	0	genome.wustl.edu	37	11	101375029	101375029	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	101375029	101375029	A	C	SNP	TRPC6	ENST00000344327	human	ensembl	74_37	-1	known	missense	c.671	p.I224S	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC6_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC6	HGNC	ENSG00000137672				99	0	0	83	19	18.6275
MRVI1	0	genome.wustl.edu	37	11	10651144	10651144	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	10651144	10651144	T	C	SNP	MRVI1	ENST00000421747	human	ensembl	74_37	-1	known	missense	c.488	p.E163G	1.000	NULL	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952				38	0	0	25	10	28.5714
MUC2	0	genome.wustl.edu	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	1092910	1092910	G	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.4729	p.G1577S	0.048	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				19	0	0	10	4	28.5714
OR10G7	0	genome.wustl.edu	37	11	123908974	123908974	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	123908974	123908974	G	A	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	silent	c.735	p.I245	0.095	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634				93	0	0	43	46	51.6854
LRP4-AS1	0	genome.wustl.edu	37	11	46895281	46895281	+	RNA	SNP	T	T	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	46895281	46895281	T	A	SNP	LRP4-AS1	ENST00000502049	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRP4-AS1	HGNC	ENSG00000247675				8	0	0	6	7	53.8462
FOLH1	0	genome.wustl.edu	37	11	49208305	49208305	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	49208305	49208305	A	C	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.530	p.V177G	1.000	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205				68	0	0	63	13	17.1053
OR52E2	0	genome.wustl.edu	37	11	5080572	5080572	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	5080572	5080572	A	C	SNP	OR52E2	ENST00000321522	human	ensembl	74_37	-1	known	missense	c.286	p.F96V	0.112	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E2	HGNC	ENSG00000176787				28	0	0	23	4	14.8148
OR52A5	0	genome.wustl.edu	37	11	5153615	5153615	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	5153615	5153615	G	A	SNP	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	silent	c.258	p.I86	0.011	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				65	0	0	39	13	25
OR51B6	0	genome.wustl.edu	37	11	5372892	5372892	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	5372892	5372892	A	T	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.155	p.N52I	0.006	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239				59	0	0	33	25	43.1034
OR5T2	0	genome.wustl.edu	37	11	56000483	56000483	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	56000483	56000483	A	C	SNP	OR5T2	ENST00000313264	human	ensembl	74_37	-1	known	missense	c.179	p.L60R	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5T2	HGNC	ENSG00000181718				54	0	0	38	17	30.9091
FAM111A	0	genome.wustl.edu	37	11	58919526	58919526	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	58919526	58919526	C	T	SNP	FAM111A	ENST00000361723	human	ensembl	74_37	+1	known	missense	c.385	p.R129C	0.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111A	HGNC	ENSG00000166801				80	0	0	66	12	15.3846
OR5A1	0	genome.wustl.edu	37	11	59210757	59210757	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	59210757	59210757	T	C	SNP	OR5A1	ENST00000302030	human	ensembl	74_37	+1	known	missense	c.116	p.L39P	0.006	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5A1	HGNC	ENSG00000172320				125	0	0	87	47	35.0746
VPS51	0	genome.wustl.edu	37	11	64875883	64875883	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	64875883	64875883	G	A	SNP	VPS51	ENST00000279281	human	ensembl	74_37	+1	known	missense	c.940	p.G314S	1.000	superfamily_Cullin_repeat-like_dom	pfam_COG8,pfam_Vacuolar_sorting-assoc_54,pfam_COG_su2_N,pfam_RZZ-complex_Zw10,superfamily_Cullin_repeat-like_dom	-	no_errors	VPS51	HGNC	ENSG00000149823				42	0	0	35	15	30
PDE2A	0	genome.wustl.edu	37	11	72292506	72292506	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	72292506	72292506	T	G	SNP	PDE2A	ENST00000334456	human	ensembl	74_37	-1	known	missense	c.1940	p.K647T	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE2A	HGNC	ENSG00000186642				23	0	0	9	8	47.0588
P4HA3	0	genome.wustl.edu	37	11	73979244	73979244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	73979244	73979244	C	T	SNP	P4HA3	ENST00000331597	human	ensembl	74_37	-1	known	missense	c.1510	p.G504R	1.000	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HA3	HGNC	ENSG00000149380				253	0	0	203	22	9.77778
OR10A3	0	genome.wustl.edu	37	11	7960800	7960800	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	11	7960800	7960800	T	G	SNP	OR10A3	ENST00000360759	human	ensembl	74_37	-1	known	missense	c.268	p.T90P	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10A3	HGNC	ENSG00000170683				138	0	0	82	42	33.871
CLEC1A	0	genome.wustl.edu	37	12	10228175	10228175	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	10228175	10228175	A	G	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	silent	c.471	p.S157	0.576	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048				64	0	0	54	8	12.9032
CLEC1A	0	genome.wustl.edu	37	12	10233966	10233966	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	10233966	10233966	A	G	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	silent	c.261	p.S87	0.011	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048				64	0	0	45	30	40
TBX5	0	genome.wustl.edu	37	12	114823305	114823305	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	114823305	114823305	A	G	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	missense	c.731	p.L244P	0.998	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				55	0	0	51	15	22.7273
SRRM4	0	genome.wustl.edu	37	12	119594441	119594441	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	119594441	119594441	C	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.1674	p.S558R	0.999	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767				25	0	0	12	9	42.8571
MMP17	0	genome.wustl.edu	37	12	132325197	132325197	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	132325197	132325197	A	G	SNP	MMP17	ENST00000360564	human	ensembl	74_37	+1	known	missense	c.502	p.S168G	0.998	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,pirsf_Pept_M10A_Metazoans,prints_Pept_M10A	-	no_errors	MMP17	HGNC	ENSG00000198598				144	0	0	194	19	8.92019
PDE3A	0	genome.wustl.edu	37	12	20833005	20833005	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	20833005	20833005	A	T	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	missense	c.3226	p.T1076S	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				125	0	0	91	27	22.8814
DENND5B	0	genome.wustl.edu	37	12	31555507	31555507	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	31555507	31555507	C	A	SNP	DENND5B	ENST00000306833	human	ensembl	74_37	-1	known	missense	c.2979	p.W993C	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,pfscan_PLAT/LH2_dom	pfam_DENN_dom,pfam_Run,pfam_uDENN_dom,pfam_dDENN_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_Run,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_PLAT/LH2_dom,pfscan_Run	-	no_errors	DENND5B	HGNC	ENSG00000170456				122	0	0	77	26	25.2427
EFCAB4B	0	genome.wustl.edu	37	12	3768756	3768756	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	3768756	3768756	T	C	SNP	EFCAB4B	ENST00000440314	human	ensembl	74_37	-1	known	missense	c.736	p.S246G	0.690	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_EF_hand_dom,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038				47	0	0	20	18	47.3684
LRRK2	0	genome.wustl.edu	37	12	40651103	40651103	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	40651103	40651103	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.1342	p.L448V	0.463	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				61	0	0	41	10	19.6078
CLEC4D	0	genome.wustl.edu	37	12	8672825	8672825	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	12	8672825	8672825	T	G	SNP	CLEC4D	ENST00000299665	human	ensembl	74_37	+1	known	missense	c.388	p.F130V	0.950	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC4D	HGNC	ENSG00000166527				65	0	0	32	25	43.8596
COL4A1	0	genome.wustl.edu	37	13	110827648	110827648	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	110827648	110827648	A	C	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.3115	p.L1039V	0.006	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				72	0	0	51	23	31.0811
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36776025	36776025	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	36776025	36776025	T	C	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.485	p.K162R	0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				58	0	0	43	17	28.3333
POSTN	0	genome.wustl.edu	37	13	38156507	38156507	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	38156507	38156507	C	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	missense	c.1388	p.R463H	1.000	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_FAS1_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				87	0	0	53	34	39.0805
TRPC4	0	genome.wustl.edu	37	13	38211441	38211441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	38211441	38211441	A	G	SNP	TRPC4	ENST00000379681	human	ensembl	74_37	-1	known	missense	c.2548	p.F850L	1.000	prints_TRPC4_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107				54	0	0	31	18	36.7347
PCDH20	0	genome.wustl.edu	37	13	61986482	61986482	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	61986482	61986482	A	C	SNP	PCDH20	ENST00000409186	human	ensembl	74_37	-1	known	missense	c.1750	p.L584V	0.706	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991				71	0	0	63	20	24.0964
OR4N4	0	genome.wustl.edu	37	15	22383054	22383054	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	22383054	22383054	G	A	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	silent	c.582	p.V194	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				98	0	0	70	11	13.5802
C2CD4B	0	genome.wustl.edu	37	15	62457104	62457104	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	62457104	62457104	G	C	SNP	C2CD4B	ENST00000380392	human	ensembl	74_37	-1	known	missense	c.80	p.P27R	0.999	NULL	superfamily_C2_dom	-	no_errors	C2CD4B	HGNC	ENSG00000205502				10	0	0	2	4	66.6667
CSK	0	genome.wustl.edu	37	15	75093259	75093259	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	75093259	75093259	A	G	SNP	CSK	ENST00000220003	human	ensembl	74_37	+1	known	missense	c.718	p.M240V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	CSK	HGNC	ENSG00000103653				60	0	0	31	45	59.2105
SEMA4B	0	genome.wustl.edu	37	15	90770838	90770838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	90770838	90770838	G	A	SNP	SEMA4B	ENST00000332496	human	ensembl	74_37	+1	known	missense	c.1738	p.A580T	0.000	superfamily_Plexin-like_fold	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4B	HGNC	ENSG00000185033				55	0	0	23	16	41.0256
SMG1	0	genome.wustl.edu	37	16	18937330	18937330	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	18937330	18937330	T	C	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	missense	c.34	p.S12G	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106				22	0	0	23	3	11.5385
DNAH3	0	genome.wustl.edu	37	16	21060984	21060984	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	21060984	21060984	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.4367	p.S1456Y	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				71	0	0	64	24	27.2727
GTF3C1	0	genome.wustl.edu	37	16	27473757	27473757	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	27473757	27473757	C	A	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.5975	p.G1992V	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				30	0	0	26	12	31.5789
KAT8	0	genome.wustl.edu	37	16	31129170	31129170	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	31129170	31129170	G	C	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.168	p.E56D	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				14	0	0	4	3	42.8571
SLX4	0	genome.wustl.edu	37	16	3640167	3640167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	3640167	3640167	C	T	SNP	SLX4	ENST00000294008	human	ensembl	74_37	-1	known	missense	c.3472	p.D1158N	0.984	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827				109	0	0	123	13	9.55882
CES1	0	genome.wustl.edu	37	16	55862812	55862812	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	55862812	55862812	C	T	SNP	CES1	ENST00000360526	human	ensembl	74_37	-1	known	missense	c.127	p.G43R	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES1	HGNC	ENSG00000198848				62	0	0	62	6	8.82353
VAT1L	0	genome.wustl.edu	37	16	77913091	77913091	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	77913091	77913091	G	A	SNP	VAT1L	ENST00000302536	human	ensembl	74_37	+1	known	silent	c.852	p.E284	1.000	smart_PKS_ER	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like,smart_PKS_ER	-	no_errors	VAT1L	HGNC	ENSG00000171724				85	0	0	54	23	29.8701
PLCG2	0	genome.wustl.edu	37	16	81922830	81922830	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	81922830	81922830	T	G	SNP	PLCG2	ENST00000359376	human	ensembl	74_37	+1	known	missense	c.819	p.I273M	0.677	pfam_PLipase_C_EF-hand-like,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_SH3_domain,pfam_C2_dom,pfam_PLipase_C_EF-hand-like,pfam_SH3_2,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2,prints_SH3_domain	-	no_errors	PLCG2	HGNC	ENSG00000197943				16	0	0	6	6	50
SPIRE2	0	genome.wustl.edu	37	16	89916733	89916733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	16	89916733	89916733	G	A	SNP	SPIRE2	ENST00000378247	human	ensembl	74_37	+1	known	missense	c.310	p.A104T	1.000	smart_KIND	superfamily_Znf_FYVE_PHD,smart_KIND	-	no_errors	SPIRE2	HGNC	ENSG00000204991				23	0	0	12	11	47.8261
MYH13	0	genome.wustl.edu	37	17	10215932	10215932	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	10215932	10215932	C	T	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	missense	c.4324	p.A1442T	0.987	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788				27	0	0	5	8	61.5385
DNAH9	0	genome.wustl.edu	37	17	11687713	11687713	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	11687713	11687713	T	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.7918	p.F2640V	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				266	0	0	143	56	28.1407
TSR1	0	genome.wustl.edu	37	17	2235606	2235606	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	2235606	2235606	C	T	SNP	TSR1	ENST00000301364	human	ensembl	74_37	-1	known	silent	c.1353	p.G451	0.984	NULL	pfam_BMS1_TSR1_C,pfam_AARP2CN,superfamily_Transl_B-barrel,smart_AARP2CN	-	no_errors	TSR1	HGNC	ENSG00000167721				97	0	0	59	11	15.7143
UTP6	0	genome.wustl.edu	37	17	30205307	30205307	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	30205307	30205307	C	G	SNP	UTP6	ENST00000261708	human	ensembl	74_37	-1	known	missense	c.1087	p.E363Q	0.928	NULL	pfam_U3_snoRNA_assoc-6,smart_HAT	-	no_errors	UTP6	HGNC	ENSG00000108651				81	0	0	23	46	66.6667
CDC27	0	genome.wustl.edu	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	45234397	45234397	G	A	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.724	p.P242S	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897				47	0	0	26	5	16.129
SDK2	0	genome.wustl.edu	37	17	71361524	71361524	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	71361524	71361524	A	G	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	silent	c.5178	p.A1726	0.426	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188				27	0	0	20	7	25.9259
TP53	0	genome.wustl.edu	37	17	7579414	7579414	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	7579414	7579414	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.273	p.W91*	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				138	1	0.719424	57	89	60.9589
DNAH17	0	genome.wustl.edu	37	17	76488800	76488800	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	17	76488800	76488800	C	T	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.6414	p.P2138	0.043	pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775				29	0	0	17	9	34.6154
DLGAP1	0	genome.wustl.edu	37	18	3729300	3729300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	18	3729300	3729300	C	T	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.1426	p.V476M	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				57	0	0	28	26	48.1481
SERPINB7	0	genome.wustl.edu	37	18	61465873	61465873	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	18	61465873	61465873	A	G	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	missense	c.490	p.S164G	0.682	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				63	0	0	29	38	56.7164
CTDP1	0	genome.wustl.edu	37	18	77475328	77475328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	18	77475328	77475328	G	A	SNP	CTDP1	ENST00000299543	human	ensembl	74_37	+1	known	missense	c.1868	p.R623H	0.966	NULL	pfam_FCP1_C,pfam_NIF,superfamily_HAD-like_dom,superfamily_BRCT_dom,superfamily_Single_hybrid_motif,smart_NIF,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_NIF,tigrfam_FCP1_euk	-	no_errors	CTDP1	HGNC	ENSG00000060069				21	0	0	16	3	15.7895
TMED1	0	genome.wustl.edu	37	19	10943724	10943724	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	10943724	10943724	G	A	SNP	TMED1	ENST00000214869	human	ensembl	74_37	-1	known	nonsense	c.631	p.Q211*	1.000	pfam_GOLD	pfam_GOLD,superfamily_GOLD,pfscan_GOLD	-	no_errors	TMED1	HGNC	ENSG00000099203				99	0	0	39	30	43.4783
ZNF208	0	genome.wustl.edu	37	19	22170054	22170054	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	22170054	22170054	T	G	SNP	ZNF208	ENST00000599916	human	ensembl	74_37	-1	putative	missense	c.190	p.N64H	0.061	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				63	0	0	37	9	19.5652
ZNF98	0	genome.wustl.edu	37	19	22586215	22586215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	22586215	22586215	C	T	SNP	ZNF98	ENST00000357774	human	ensembl	74_37	-1	known	missense	c.130	p.E44K	0.165	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360				103	0	0	42	22	34.375
ZNF728	0	genome.wustl.edu	37	19	23158995	23158995	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	23158995	23158995	T	G	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	missense	c.1144	p.S382R	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067				69	0	0	40	22	35.4839
PAFAH1B3	0	genome.wustl.edu	37	19	42801375	42801375	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	42801375	42801375	G	C	SNP	PAFAH1B3	ENST00000262890	human	ensembl	74_37	-1	known	missense	c.551	p.T184S	1.000	NULL	NULL	-	no_errors	PAFAH1B3	HGNC	ENSG00000079462				139	0	0	92	7	7.07071
ZNF229	0	genome.wustl.edu	37	19	44933946	44933946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	44933946	44933946	C	T	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	missense	c.1010	p.R337H	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383				73	0	0	53	36	40.4494
SIGLEC6	0	genome.wustl.edu	37	19	52034441	52034441	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	52034441	52034441	A	G	SNP	SIGLEC6	ENST00000425629	human	ensembl	74_37	-1	known	missense	c.400	p.S134P	0.000	smart_Ig_sub	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC6	HGNC	ENSG00000105492				170	0	0	211	19	8.26087
PTPRS	0	genome.wustl.edu	37	19	5221118	5221118	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	5221118	5221118	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	nonsense	c.3351	p.W1117*	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				147	0	0	94	18	16.0714
MIR519B	0	genome.wustl.edu	37	19	54198501	54198501	+	RNA	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	54198501	54198501	T	G	SNP	MIR519B	ENST00000385090	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.017	-	-	-	no_errors	MIR519B	HGNC	ENSG00000207825				119	0	0	117	34	22.5166
ZSCAN5A	0	genome.wustl.edu	37	19	56733565	56733565	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	56733565	56733565	G	A	SNP	ZSCAN5A	ENST00000391713	human	ensembl	74_37	-1	known	silent	c.870	p.D290	0.000	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN5A	HGNC	ENSG00000131848				139	0	0	281	18	6.02007
ZNF471	0	genome.wustl.edu	37	19	57027765	57027765	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	57027765	57027765	C	T	SNP	ZNF471	ENST00000308031	human	ensembl	74_37	+1	known	missense	c.155	p.S52L	0.128	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF471	HGNC	ENSG00000196263				88	0	0	162	17	9.49721
ZNF416	0	genome.wustl.edu	37	19	58084403	58084403	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	58084403	58084403	C	G	SNP	ZNF416	ENST00000196489	human	ensembl	74_37	-1	known	missense	c.869	p.R290T	0.108	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF416	HGNC	ENSG00000083817				88	0	0	153	36	19.0476
ZNF446	0	genome.wustl.edu	37	19	58989171	58989171	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	58989171	58989171	C	T	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	silent	c.510	p.P170	0.045	NULL	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				33	0	0	65	7	9.72222
XAB2	0	genome.wustl.edu	37	19	7689226	7689226	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	7689226	7689226	T	C	SNP	XAB2	ENST00000358368	human	ensembl	74_37	-1	known	missense	c.928	p.K310E	0.902	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924				131	0	0	78	22	22
NEB	0	genome.wustl.edu	37	2	152522764	152522764	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	152522764	152522764	T	G	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	missense	c.4871	p.K1624T	0.997	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				173	0	0	128	27	17.4194
XIRP2	0	genome.wustl.edu	37	2	168103939	168103939	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	168103939	168103939	A	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	nonsense	c.6037	p.R2013*	0.238	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				42	0	0	21	13	38.2353
TTN	0	genome.wustl.edu	37	2	179584017	179584017	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	179584017	179584017	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.20368	p.S6790R	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				186	0	0	150	27	15.2542
MYT1L	0	genome.wustl.edu	37	2	1893197	1893197	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	1893197	1893197	T	G	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.2336	p.K779T	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				88	0	0	63	20	24.0964
PAX3	0	genome.wustl.edu	37	2	223158949	223158949	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	223158949	223158949	T	C	SNP	PAX3	ENST00000392069	human	ensembl	74_37	-1	known	missense	c.523	p.K175E	1.000	NULL	pfam_Paired_dom,pfam_Pax7,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Paired_dom,prints_Paired_dom	-	no_errors	PAX3	HGNC	ENSG00000135903				118	0	0	78	29	27.1028
AGFG1	0	genome.wustl.edu	37	2	228416831	228416831	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	228416831	228416831	A	C	SNP	AGFG1	ENST00000409979	human	ensembl	74_37	+1	known	missense	c.1607	p.N536T	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGFG1	HGNC	ENSG00000173744				75	0	0	52	15	22.3881
LTBP1	0	genome.wustl.edu	37	2	33500954	33500954	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	33500954	33500954	A	G	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.2959	p.S987G	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323				128	0	0	122	19	13.4752
SNRPG	0	genome.wustl.edu	37	2	70520772	70520772	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	70520772	70520772	C	A	SNP	SNRPG	ENST00000272348	human	ensembl	74_37	-1	known	missense	c.10	p.A4S	1.000	NULL	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc	-	no_errors	SNRPG	HGNC	ENSG00000143977				143	0	0	123	16	11.5108
EIF2AK3	0	genome.wustl.edu	37	2	88888295	88888295	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	88888295	88888295	T	G	SNP	EIF2AK3	ENST00000303236	human	ensembl	74_37	-1	known	missense	c.1290	p.K430N	0.973	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EIF2AK3	HGNC	ENSG00000172071				77	0	0	52	8	13.3333
BPIFB6	0	genome.wustl.edu	37	20	31623461	31623461	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	31623461	31623461	A	C	SNP	BPIFB6	ENST00000349552	human	ensembl	74_37	+1	known	missense	c.560	p.K187T	1.000	superfamily_Bactericidal_perm-incr_a/b_dom	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB6	HGNC	ENSG00000167104				163	0	0	201	31	13.3621
PABPC1L	0	genome.wustl.edu	37	20	43552831	43552831	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	43552831	43552831	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	silent	c.906	p.D302	0.994	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				132	0	0	72	99	57.8947
SNX21	0	genome.wustl.edu	37	20	44469494	44469494	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	44469494	44469494	C	G	SNP	SNX21	ENST00000491381	human	ensembl	74_37	+1	known	missense	c.664	p.H222D	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,pfam_TPR_1,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX21	HGNC	ENSG00000124104				121	0	0	233	35	13.0597
PRND	0	genome.wustl.edu	37	20	4705530	4705530	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	4705530	4705530	C	T	SNP	PRND	ENST00000305817	human	ensembl	74_37	+1	known	silent	c.333	p.A111	1.000	pfam_Prion/Doppel_prot_b-ribbon_dom,superfamily_Prion/Doppel_prot_b-ribbon_dom	pfam_Prion/Doppel_prot_b-ribbon_dom,pfam_Doppel,superfamily_Prion/Doppel_prot_b-ribbon_dom	-	no_errors	PRND	HGNC	ENSG00000171864				107	0	0	70	10	12.5
CASS4	0	genome.wustl.edu	37	20	55027331	55027331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	55027331	55027331	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.1099	p.E367K	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				91	0	0	103	21	16.9355
MYT1	0	genome.wustl.edu	37	20	62848549	62848549	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	20	62848549	62848549	C	T	SNP	MYT1	ENST00000536311	human	ensembl	74_37	+1	known	silent	c.1761	p.Y587	1.000	pfam_Myelin_TF	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1	HGNC	ENSG00000196132				112	0	0	44	27	38.0282
ADAMTS1	0	genome.wustl.edu	37	21	28216851	28216851	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	21	28216851	28216851	G	A	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	silent	c.423	p.L141	1.000	pfam_Peptidase_M12B_N	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734				18	0	0	14	6	30
KRTAP13-1	0	genome.wustl.edu	37	21	31768881	31768881	+	Silent	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	21	31768881	31768881	T	G	SNP	KRTAP13-1	ENST00000355459	human	ensembl	74_37	+1	known	silent	c.477	p.S159	0.001	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP13-1	HGNC	ENSG00000198390				51	0	0	27	13	32.5
SUSD2	0	genome.wustl.edu	37	22	24582117	24582117	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	24582117	24582117	G	A	SNP	SUSD2	ENST00000358321	human	ensembl	74_37	+1	known	silent	c.1473	p.T491	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_AMOP,pfam_VWF_type-D,pfam_Sushi_SCR_CCP,pfam_Somatomedin_B_dom,superfamily_Sushi_SCR_CCP,superfamily_Ig_E-set,smart_AMOP,smart_VWF_type-D,smart_Sushi_SCR_CCP,pfscan_AMOP,pfscan_Somatomedin_B_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD2	HGNC	ENSG00000099994				42	0	0	17	10	37.037
ENSG00000231933	0	genome.wustl.edu	37	22	26291074	26291074	+	RNA	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	26291074	26291074	T	G	SNP	ENSG00000231933	ENST00000596813	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTA-125H2.2	Clone_based_vega_gene	ENSG00000231933				15	0	0	12	4	25
SF3A1	0	genome.wustl.edu	37	22	30731741	30731741	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	30731741	30731741	C	T	SNP	SF3A1	ENST00000215793	human	ensembl	74_37	-1	known	missense	c.2108	p.G703D	1.000	NULL	pfam_PRP21-like,pfam_Surp,pfam_Ubiquitin_dom,superfamily_Surp,smart_Surp,smart_Ubiquitin_dom,pfscan_Surp,pfscan_Ubiquitin_supergroup	-	no_errors	SF3A1	HGNC	ENSG00000099995				80	0	0	63	23	26.7442
TNFRSF13C	0	genome.wustl.edu	37	22	42322215	42322215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	42322215	42322215	C	T	SNP	TNFRSF13C	ENST00000291232	human	ensembl	74_37	-1	known	missense	c.257	p.G86D	1.000	prints_TNFR_13C	pfam_TNFR_13C_TALL-1-bd,prints_TNFR_13C	-	no_errors	TNFRSF13C	HGNC	ENSG00000159958				29	0	0	17	9	34.6154
PRR5	0	genome.wustl.edu	37	22	45132666	45132666	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	45132666	45132666	C	T	SNP	PRR5	ENST00000336985	human	ensembl	74_37	+1	known	missense	c.706	p.R236C	0.995	NULL	pfam_HbrB	-	no_errors	PRR5	HGNC	ENSG00000186654				184	0	0	100	39	28.0576
CELSR1	0	genome.wustl.edu	37	22	46776852	46776852	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	22	46776852	46776852	C	T	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.7089	p.R2363	0.995	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				42	0	0	29	13	30.9524
ATG7	0	genome.wustl.edu	37	3	11348463	11348463	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	11348463	11348463	T	G	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.262	p.Y88D	0.878	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548				153	0	0	88	63	41.7219
POLQ	0	genome.wustl.edu	37	3	121255950	121255950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	121255950	121255950	G	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.737	p.S246F	0.027	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				41	0	0	60	16	21.0526
ASTE1	0	genome.wustl.edu	37	3	130743848	130743848	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	130743848	130743848	C	A	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	missense	c.303	p.Q101H	0.923	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				54	0	0	35	32	47.7612
CLSTN2	0	genome.wustl.edu	37	3	140277549	140277549	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	140277549	140277549	A	T	SNP	CLSTN2	ENST00000458420	human	ensembl	74_37	+1	known	missense	c.1891	p.I631F	0.080	NULL	pfam_Cadherin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CLSTN2	HGNC	ENSG00000158258				98	0	0	93	16	14.6789
NAALADL2	0	genome.wustl.edu	37	3	174814732	174814732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	174814732	174814732	C	A	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	missense	c.196	p.L66I	0.011	NULL	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				38	0	0	39	13	25
OR5AC2	0	genome.wustl.edu	37	3	97806523	97806523	+	Silent	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	97806523	97806523	T	G	SNP	OR5AC2	ENST00000358642	human	ensembl	74_37	+1	known	silent	c.507	p.T169	0.094	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AC2	HGNC	ENSG00000196578				89	0	0	104	18	14.7541
ETNPPL	0	genome.wustl.edu	37	4	109667632	109667632	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	109667632	109667632	A	C	SNP	ETNPPL	ENST00000296486	human	ensembl	74_37	-1	known	missense	c.1226	p.L409R	0.994	superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ETNPPL	HGNC	ENSG00000164089				52	0	0	29	6	17.1429
NT5C3AP1	0	genome.wustl.edu	37	4	118496589	118496589	+	RNA	SNP	T	T	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	118496589	118496589	T	A	SNP	NT5C3AP1	ENST00000441170	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NT5C3AP1	HGNC	ENSG00000213492				48	0	0	24	5	17.2414
TENM3	0	genome.wustl.edu	37	4	183714423	183714423	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	183714423	183714423	A	G	SNP	TENM3	ENST00000406950	human	ensembl	74_37	+1	known	missense	c.6598	p.R2200G	0.711	superfamily_Cyt_c-like_dom	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,superfamily_Cyt_c-like_dom,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM3	HGNC	ENSG00000218336				81	0	0	55	33	37.5
SLIT2	0	genome.wustl.edu	37	4	20597367	20597367	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	20597367	20597367	T	G	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.3230	p.F1077C	0.964	smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147				225	0	0	206	54	20.7692
NSUN7	0	genome.wustl.edu	37	4	40752722	40752722	+	Silent	SNP	C	C	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	40752722	40752722	C	G	SNP	NSUN7	ENST00000381782	human	ensembl	74_37	+1	known	silent	c.12	p.S4	0.000	NULL	pfam_Fmu/NOL1/Nop2p	-	no_errors	NSUN7	HGNC	ENSG00000179299				94	0	0	57	19	25
GABRA4	0	genome.wustl.edu	37	4	46967016	46967016	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	46967016	46967016	T	C	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.1105	p.R369G	0.850	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAa4_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158				92	0	0	59	30	33.7079
ATP10D	0	genome.wustl.edu	37	4	47574206	47574206	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	47574206	47574206	G	T	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	missense	c.3199	p.A1067S	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246				88	0	0	59	20	25.3165
OCIAD2	0	genome.wustl.edu	37	4	48894870	48894870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	48894870	48894870	G	A	SNP	OCIAD2	ENST00000508632	human	ensembl	74_37	-1	known	missense	c.302	p.S101L	0.218	pfam_OCIA	pfam_OCIA	-	no_errors	OCIAD2	HGNC	ENSG00000145247				192	0	0	152	17	10.0592
ODAM	0	genome.wustl.edu	37	4	71063822	71063822	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	71063822	71063822	T	G	SNP	ODAM	ENST00000396094	human	ensembl	74_37	+1	known	missense	c.323	p.V108G	0.001	NULL	NULL	-	no_errors	ODAM	HGNC	ENSG00000109205				218	0	0	108	65	37.5723
MOB1B	0	genome.wustl.edu	37	4	71844993	71844993	+	Silent	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	4	71844993	71844993	T	C	SNP	MOB1B	ENST00000309395	human	ensembl	74_37	+1	known	silent	c.558	p.F186	1.000	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB1B	HGNC	ENSG00000173542				73	0	0	48	29	37.6623
PCDHA10	0	genome.wustl.edu	37	5	140237357	140237357	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	5	140237357	140237357	C	A	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	missense	c.1724	p.A575E	0.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				134	1	0.740741	132	34	20.4819
ADAM19	0	genome.wustl.edu	37	5	156907962	156907962	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	5	156907962	156907962	T	G	SNP	ADAM19	ENST00000394020	human	ensembl	74_37	-1	known	missense	c.2758	p.I920L	1.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM19	HGNC	ENSG00000135074				50	0	0	47	11	18.9655
KCNMB1	0	genome.wustl.edu	37	5	169810628	169810628	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	5	169810628	169810628	G	A	SNP	KCNMB1	ENST00000521859	human	ensembl	74_37	-1	known	missense	c.361	p.P121S	0.000	NULL	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB1	HGNC	ENSG00000145936				24	0	0	8	17	68
ADAMTS12	0	genome.wustl.edu	37	5	33637847	33637847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	5	33637847	33637847	T	C	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.1723	p.K575E	0.989	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				42	0	0	43	13	23.2143
SEC63	0	genome.wustl.edu	37	6	108214751	108214751	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	108214751	108214751	T	C	SNP	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	missense	c.1609	p.T537A	0.982	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				68	0	0	58	4	6.45161
SYNE1	0	genome.wustl.edu	37	6	152651681	152651681	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	152651681	152651681	T	G	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.14139	p.Q4713H	0.787	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				55	0	0	59	16	21.3333
THBS2	0	genome.wustl.edu	37	6	169623453	169623453	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	169623453	169623453	A	T	SNP	THBS2	ENST00000366787	human	ensembl	74_37	-1	known	missense	c.2891	p.M964K	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_Thrombospondin_1_rpt,pfam_VWF_C,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Thrombospondin_1_rpt,smart_Laminin_G,smart_VWF_C,smart_Thrombospondin_1_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Thrombospondin_1_rpt,pfscan_VWF_C	-	no_errors	THBS2	HGNC	ENSG00000186340				47	0	0	52	22	29.7297
HIST1H4C	0	genome.wustl.edu	37	6	26104229	26104229	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	26104229	26104229	C	T	SNP	HIST1H4C	ENST00000377803	human	ensembl	74_37	+1	known	silent	c.54	p.R18	0.331	superfamily_Histone-fold,smart_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4C	HGNC	ENSG00000197061				111	0	0	62	30	32.6087
TNXB	0	genome.wustl.edu	37	6	32049829	32049829	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	32049829	32049829	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.3720	p.T1240	0.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				15	0	0	14	6	30
TDRD6	0	genome.wustl.edu	37	6	46658993	46658993	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	46658993	46658993	A	G	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	missense	c.3128	p.K1043R	0.368	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				52	0	0	29	15	34.0909
COL12A1	0	genome.wustl.edu	37	6	75797366	75797366	+	Silent	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	6	75797366	75797366	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.9108	p.G3036	0.043	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				108	0	0	76	12	13.6364
PIK3CG	0	genome.wustl.edu	37	7	106508733	106508733	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	106508733	106508733	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.727	p.A243T	0.000	pfam_PI3K_Ras-bd_dom,smart_PI3K_Ras-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				119	0	0	160	59	26.9406
PLXNA4	0	genome.wustl.edu	37	7	131864619	131864619	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	131864619	131864619	A	C	SNP	PLXNA4	ENST00000321063	human	ensembl	74_37	-1	known	missense	c.3701	p.L1234R	1.000	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA4	HGNC	ENSG00000221866				31	0	0	8	35	81.3953
KIAA1549	0	genome.wustl.edu	37	7	138546176	138546176	+	Silent	SNP	C	C	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	138546176	138546176	C	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.4956	p.V1652	0.028	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				23	0	0	35	6	14.6341
CNTNAP2	0	genome.wustl.edu	37	7	147869394	147869394	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	147869394	147869394	T	G	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.2834	p.V945G	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				67	0	0	32	45	58.4416
CUL1	0	genome.wustl.edu	37	7	148427251	148427251	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	148427251	148427251	A	C	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.37	p.K13Q	1.000	NULL	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				153	0	0	66	125	65.445
TMEM248	0	genome.wustl.edu	37	7	66413649	66413649	+	Silent	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	66413649	66413649	C	A	SNP	TMEM248	ENST00000341567	human	ensembl	74_37	+1	known	silent	c.564	p.L188	1.000	NULL	NULL	-	no_errors	TMEM248	HGNC	ENSG00000106609				70	0	0	36	20	35.7143
PCLO	0	genome.wustl.edu	37	7	82784787	82784787	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	82784787	82784787	A	G	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	silent	c.1170	p.A390	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				94	0	0	54	15	21.7391
GRM3	0	genome.wustl.edu	37	7	86416183	86416183	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	86416183	86416183	T	C	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.1075	p.F359L	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				55	0	0	221	26	10.5263
GRM3	0	genome.wustl.edu	37	7	86416411	86416411	+	Silent	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	86416411	86416411	T	C	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	silent	c.1303	p.L435	0.963	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_2	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				165	0	0	465	31	6.25
KIAA1324L	0	genome.wustl.edu	37	7	86539267	86539267	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	7	86539267	86539267	T	G	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.2220	p.K740N	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				53	0	0	156	23	12.8492
RIMS2	0	genome.wustl.edu	37	8	104898091	104898091	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	104898091	104898091	A	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.1264	p.S422G	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				79	0	0	43	30	41.0959
CSMD3	0	genome.wustl.edu	37	8	113988120	113988120	+	Silent	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	113988120	113988120	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	silent	c.1288	p.R430	0.998	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				119	0	0	92	34	26.9841
GSDMC	0	genome.wustl.edu	37	8	130762281	130762281	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	130762281	130762281	A	T	SNP	GSDMC	ENST00000276708	human	ensembl	74_37	-1	known	missense	c.1168	p.F390I	0.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	GSDMC	HGNC	ENSG00000147697				16	0	0	18	4	18.1818
FAM135B	0	genome.wustl.edu	37	8	139164785	139164785	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	139164785	139164785	T	G	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.1933	p.S645R	0.000	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724				76	0	0	61	30	32.967
CSMD1	0	genome.wustl.edu	37	8	2820840	2820840	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	2820840	2820840	T	G	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.9361	p.S3121R	0.999	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				212	0	0	121	56	31.6384
TUBBP1	0	genome.wustl.edu	37	8	30210598	30210598	+	RNA	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	30210598	30210598	C	T	SNP	TUBBP1	ENST00000518096	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP1	HGNC	ENSG00000127589				118	0	0	90	43	32.3308
ZMAT4	0	genome.wustl.edu	37	8	40532429	40532429	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	40532429	40532429	T	C	SNP	ZMAT4	ENST00000297737	human	ensembl	74_37	-1	known	missense	c.371	p.K124R	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZMAT4	HGNC	ENSG00000165061				241	0	0	136	65	32.3383
RP1	0	genome.wustl.edu	37	8	55533710	55533710	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	55533710	55533710	T	C	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.184	p.S62P	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237				117	0	0	101	27	21.0938
SLC26A7	0	genome.wustl.edu	37	8	92401568	92401568	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	8	92401568	92401568	G	A	SNP	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	missense	c.1678	p.E560K	0.876	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				166	0	0	101	38	27.3381
TSTD2	0	genome.wustl.edu	37	9	100367774	100367774	+	Silent	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	100367774	100367774	G	C	SNP	TSTD2	ENST00000341170	human	ensembl	74_37	-1	known	silent	c.1104	p.L368	0.998	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TSTD2	HGNC	ENSG00000136925				78	0	0	43	15	25.8621
SMC2	0	genome.wustl.edu	37	9	106889688	106889688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	106889688	106889688	C	T	SNP	SMC2	ENST00000286398	human	ensembl	74_37	+1	known	missense	c.2717	p.S906F	0.713	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	-	no_errors	SMC2	HGNC	ENSG00000136824				108	0	0	108	13	10.7438
FBXW5	0	genome.wustl.edu	37	9	139835816	139835816	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	139835816	139835816	G	C	SNP	FBXW5	ENST00000325285	human	ensembl	74_37	-1	known	missense	c.1344	p.F448L	0.594	superfamily_Quinoprot_gluc/sorb_DH	pfam_WD40_repeat,pfam_F-box_dom,superfamily_Quinoprot_gluc/sorb_DH,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW5	HGNC	ENSG00000159069				71	0	0	77	11	12.5
OSTF1	0	genome.wustl.edu	37	9	77703615	77703615	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	77703615	77703615	A	T	SNP	OSTF1	ENST00000346234	human	ensembl	74_37	+1	known	nonsense	c.7	p.K3*	1.000	superfamily_SH3_domain	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_SH3_domain,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Ankyrin_rpt	-	no_errors	OSTF1	HGNC	ENSG00000134996				22	0	0	17	3	15
SPATA31E1	0	genome.wustl.edu	37	9	90503233	90503233	+	Silent	SNP	G	G	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	90503233	90503233	G	A	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	silent	c.3831	p.R1277	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				143	0	0	119	16	11.8519
MT-ND5	0	genome.wustl.edu	37	MT	12505	12505	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	MT	12505	12505	C	T	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	silent	c.169	p.L57	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				122	0	0	39	15	27.7778
MT-RNR1	0	genome.wustl.edu	37	MT	1393	1393	+	RNA	SNP	G	G	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	MT	1393	1393	G	C	SNP	MT-RNR1	ENST00000389680	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR1	HGNC	ENSG00000211459				139	0	0	28	19	40.4255
GPM6B	0	genome.wustl.edu	37	X	13803813	13803813	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	13803813	13803813	A	G	SNP	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	missense	c.296	p.L99P	0.997	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653				76	0	0	63	7	10
GABRQ	0	genome.wustl.edu	37	X	151821216	151821216	+	Silent	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	151821216	151821216	A	G	SNP	GABRQ	ENST00000370306	human	ensembl	74_37	+1	known	silent	c.1371	p.S457	0.001	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAt_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABAAb_rcpt,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRQ	HGNC	ENSG00000147402				229	0	0	162	21	11.4754
MAGEA12	0	genome.wustl.edu	37	X	151900086	151900086	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	151900086	151900086	A	T	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	missense	c.715	p.F239I	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				267	0	0	165	75	31.25
CTAG2	0	genome.wustl.edu	37	X	153881527	153881527	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	153881527	153881527	A	T	SNP	CTAG2	ENST00000369585	human	ensembl	74_37	-1	known	missense	c.263	p.L88H	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890				105	0	0	71	5	6.57895
AKAP17A	0	genome.wustl.edu	37	X	1712436	1712436	+	Silent	SNP	C	C	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	1712436	1712436	C	T	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	silent	c.81	p.I27	0.995	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				200	0	0	77	61	44.2029
MID1IP1	0	genome.wustl.edu	37	X	38664471	38664471	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	38664471	38664471	A	G	SNP	MID1IP1	ENST00000336949	human	ensembl	74_37	+1	known	missense	c.272	p.Y91C	1.000	pfam_Spot_14	pfam_Spot_14	-	no_errors	MID1IP1	HGNC	ENSG00000165175				125	0	0	44	69	61.0619
HUWE1	0	genome.wustl.edu	37	X	53622292	53622292	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	53622292	53622292	C	A	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.3235	p.V1079F	1.000	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				66	0	0	61	6	8.95522
OPHN1	0	genome.wustl.edu	37	X	67273537	67273537	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	67273537	67273537	T	G	SNP	OPHN1	ENST00000355520	human	ensembl	74_37	-1	known	missense	c.2274	p.E758D	0.989	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	OPHN1	HGNC	ENSG00000079482				50	0	0	46	7	13.2075
TAF1	0	genome.wustl.edu	37	X	70627984	70627984	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	70627984	70627984	A	C	SNP	TAF1	ENST00000449580	human	ensembl	74_37	+1	known	missense	c.4364	p.N1455T	1.000	pirsf_TAF1_animal,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133				93	0	0	39	37	48.6842
ACRC	0	genome.wustl.edu	37	X	70824126	70824126	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	70824126	70824126	A	C	SNP	ACRC	ENST00000373695	human	ensembl	74_37	+1	known	missense	c.999	p.E333D	0.000	NULL	pfam_SprT-like_domain,smart_SprT-like_domain	-	no_errors	ACRC	HGNC	ENSG00000147174				172	0	0	180	12	6.25
CYLC1	0	genome.wustl.edu	37	X	83128921	83128921	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	83128921	83128921	A	C	SNP	CYLC1	ENST00000329312	human	ensembl	74_37	+1	known	missense	c.1205	p.K402T	0.163	NULL	NULL	-	no_errors	CYLC1	HGNC	ENSG00000183035				21	0	0	17	4	19.0476
KLHL4	0	genome.wustl.edu	37	X	86880695	86880695	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	86880695	86880695	T	G	SNP	KLHL4	ENST00000373114	human	ensembl	74_37	+1	known	missense	c.1223	p.L408R	1.000	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271				68	0	0	55	7	11.2903
TGIF2LX	0	genome.wustl.edu	37	X	89177518	89177518	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	89177518	89177518	A	G	SNP	TGIF2LX	ENST00000283891	human	ensembl	74_37	+1	known	missense	c.434	p.K145R	0.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF2LX	HGNC	ENSG00000153779				117	0	0	104	23	18.1102
PDSS1	0	genome.wustl.edu	37	10	27035540	27035540	+	RNA	DEL	T	T	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	10	27035540	27035540	T	-	DEL	PDSS1	ENST00000470978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.472	-	-	-	no_errors	PDSS1	HGNC	ENSG00000148459				9	0	0	7	3	30
FAM155A	0	genome.wustl.edu	37	13	108518687	108518689	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	13	108518687	108518689	CTG	-	DEL	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	in_frame_del	c.258_256	p.Q86in_frame_del	1.000:0.992:0.987	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				81	0	0	72	9	11.1111
SNORD116-29	0	genome.wustl.edu	37	15	25351684	25351684	+	RNA	DEL	A	A	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	25351684	25351684	A	-	DEL	SNORD116-29	ENST00000384516	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNORD116-29	HGNC	ENSG00000207245				60	0	0	38	26	40.625
SPRED1	0	genome.wustl.edu	37	15	38643621	38643621	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	15	38643621	38643621	A	-	DEL	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	frame_shift_del	c.1091	p.Y364fs	1.000	pfam_Sprouty	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068				148	0	0	73	65	47.1014
ZNF677	0	genome.wustl.edu	37	19	53741537	53741541	+	Frame_Shift_Del	DEL	CTCTG	CTCTG	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	CTCTG	CTCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	19	53741537	53741541	CTCTG	-	DEL	ZNF677	ENST00000333952	human	ensembl	74_37	-1	known	frame_shift_del	c.443_439	p.Q147fs	0.004:0.011:0.145:0.340:0.446	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF677	HGNC	ENSG00000197928				58	0	0	44	23	34.3284
SMYD5	0	genome.wustl.edu	37	2	73453020	73453023	+	Frame_Shift_Del	DEL	GGAG	GGAG	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	GGAG	GGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	2	73453020	73453023	GGAG	-	DEL	SMYD5	ENST00000389501	human	ensembl	74_37	+1	known	frame_shift_del	c.1203_1206	p.E402fs	0.984:0.985:0.899:0.856	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SMYD5	HGNC	ENSG00000135632				82	0	0	70	26	27.0833
PIK3CB	0	genome.wustl.edu	37	3	138382755	138382756	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	138382755	138382756	-	T	INS	PIK3CB	ENST00000289153	human	ensembl	74_37	-1	known	frame_shift_ins	c.2789_2788	p.T930fs	0.998:1.000	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_adapt-bd_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,superfamily_ARM-type_fold,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CB	HGNC	ENSG00000051382				73	0	0	69	16	18.8235
VILL	0	genome.wustl.edu	37	3	38040404	38040406	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	3	38040404	38040406	GCT	-	DEL	VILL	ENST00000283713	human	ensembl	74_37	+1	known	in_frame_del	c.944_946	p.GF315in_frame_delV	1.000:1.000:1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	VILL	HGNC	ENSG00000136059				45	0	0	18	11	37.931
CTSL3P	0	genome.wustl.edu	37	9	90387873	90387874	+	RNA	INS	-	-	C			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	9	90387873	90387874	-	C	INS	CTSL3P	ENST00000354530	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.914:0.922	-	-	-	no_errors	CTSL3P	HGNC	ENSG00000188029				86	0	0	113	7	5.83333
OR13H1	0	genome.wustl.edu	37	X	130678330	130678330	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4PD-01A-11D-A25D-08	TCGA-BR-A4PD-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	2385d8ca-bd21-4d36-8ed9-1949a2165680	fc0f098d-8651-4be6-8401-e80d8641fbe1	X	130678330	130678330	C	-	DEL	OR13H1	ENST00000338616	human	ensembl	74_37	+1	known	frame_shift_del	c.283	p.R96fs	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13H1	HGNC	ENSG00000171054				82	0	0	96	8	7.69231
