Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRMT6	0	genome.wustl.edu	37	1	107599750	107599750	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	107599750	107599750	G	T	SNP	PRMT6	ENST00000370078	human	ensembl	74_37	+1	known	missense	c.413	p.G138V	0.656	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Arg_MeTrfase,pfam_Methyltransf_11,pfam_mo5U34_MeTrfas-like,pfam_Small_mtfrase_dom,pfam_tRNA_Trfase_Trm5/Tyw2	-	no_errors	PRMT6	HGNC	ENSG00000198890				209	0	0	51	22	30.137
OVGP1	0	genome.wustl.edu	37	1	111957788	111957788	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	111957788	111957788	G	A	SNP	OVGP1	ENST00000369732	human	ensembl	74_37	-1	known	silent	c.1335	p.T445	0.000	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	OVGP1	HGNC	ENSG00000085465				160	0	0	35	6	14.6341
PRAMEF19	0	genome.wustl.edu	37	1	13695903	13695903	+	Silent	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	13695903	13695903	G	T	SNP	PRAMEF19	ENST00000540591	human	ensembl	74_37	-1	known	silent	c.1062	p.L354	0.004	NULL	NULL	-	no_errors	PRAMEF19	HGNC	ENSG00000204480				681	1	0.146628	226	47	17.2161
TCHHL1	0	genome.wustl.edu	37	1	152057468	152057468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	152057468	152057468	C	T	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.2690	p.R897K	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898				212	1	0.469484	88	18	16.9811
FLG	0	genome.wustl.edu	37	1	152279060	152279060	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	152279060	152279060	C	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.8302	p.E2768Q	0.001	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				1372	0	0	931	59	5.9596
FLG2	0	genome.wustl.edu	37	1	152323407	152323407	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	152323407	152323407	C	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.6855	p.Q2285H	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				438	0	0	223	49	18.0147
KPRP	0	genome.wustl.edu	37	1	152733756	152733756	+	Silent	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	152733756	152733756	C	A	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	silent	c.1692	p.G564	0.001	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786				109	0	0	25	30	54.5455
LMNA	0	genome.wustl.edu	37	1	156106821	156106821	+	Splice_Site	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	156106821	156106821	T	G	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	splice_site	c.1488+2	e8+2	1.000	-	-	-	no_errors	LMNA	HGNC	ENSG00000160789				75	0	0	42	5	10.6383
FCRL5	0	genome.wustl.edu	37	1	157494243	157494243	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	157494243	157494243	T	G	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	missense	c.2065	p.I689L	0.403	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297				147	0	0	77	17	18.0851
LOC100131825	0	genome.wustl.edu	37	1	159166667	159166667	+	RNA	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	159166667	159166667	G	T	SNP	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.650	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670				114	0	0	45	6	11.7647
OR10J3	0	genome.wustl.edu	37	1	159284097	159284097	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	159284097	159284097	A	G	SNP	OR10J3	ENST00000332217	human	ensembl	74_37	-1	known	missense	c.353	p.V118A	0.658	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J3	HGNC	ENSG00000196266				157	0	0	77	17	18.0851
CLCNKB	0	genome.wustl.edu	37	1	16374433	16374433	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	16374433	16374433	C	T	SNP	CLCNKB	ENST00000375679	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	0.016	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKB	HGNC	ENSG00000184908				177	0	0	34	30	46.875
MAEL	0	genome.wustl.edu	37	1	166985522	166985522	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	166985522	166985522	G	A	SNP	MAEL	ENST00000367872	human	ensembl	74_37	+1	known	splice_site	c.908+1	e9+1	1.000	-	-	-	no_errors	MAEL	HGNC	ENSG00000143194				141	0	0	41	9	18
SUCO	0	genome.wustl.edu	37	1	172579318	172579318	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	172579318	172579318	G	A	SNP	SUCO	ENST00000608151	human	ensembl	74_37	+1	known	silent	c.4140	p.P1380	0.998	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975				84	0	0	37	9	19.5652
PADI4	0	genome.wustl.edu	37	1	17690151	17690151	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	17690151	17690151	C	T	SNP	PADI4	ENST00000375448	human	ensembl	74_37	+1	known	silent	c.1893	p.N631	0.517	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339				75	0	0	29	8	21.6216
ASTN1	0	genome.wustl.edu	37	1	176915143	176915143	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	176915143	176915143	G	T	SNP	ASTN1	ENST00000367654	human	ensembl	74_37	-1	known	missense	c.2192	p.T731N	1.000	NULL	superfamily_Fibronectin_type3,smart_EG-like_dom,smart_MACPF,pfscan_Fibronectin_type3	-	no_errors	ASTN1	HGNC	ENSG00000152092				193	0	0	39	38	49.3506
HMCN1	0	genome.wustl.edu	37	1	186101509	186101509	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	186101509	186101509	T	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.13280	p.V4427E	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				49	0	0	14	5	26.3158
TMCC2	0	genome.wustl.edu	37	1	205211050	205211050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	205211050	205211050	G	A	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	missense	c.625	p.A209T	1.000	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				36	0	0	14	13	48.1481
GNPAT	0	genome.wustl.edu	37	1	231401890	231401890	+	Silent	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	231401890	231401890	T	G	SNP	GNPAT	ENST00000366647	human	ensembl	74_37	+1	known	silent	c.903	p.P301	0.997	NULL	pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase	-	no_errors	GNPAT	HGNC	ENSG00000116906				155	0	0	59	9	13.2353
ERO1LB	0	genome.wustl.edu	37	1	236385276	236385276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	236385276	236385276	C	T	SNP	ERO1LB	ENST00000354619	human	ensembl	74_37	-1	known	missense	c.1157	p.R386H	1.000	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1LB	HGNC	ENSG00000086619				81	0	0	29	6	17.1429
OR2G2	0	genome.wustl.edu	37	1	247752051	247752051	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	247752051	247752051	C	A	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	nonsense	c.390	p.C130*	0.053	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				319	0	0	138	28	16.8675
HMGB4	0	genome.wustl.edu	37	1	34329993	34329993	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	34329993	34329993	C	A	SNP	HMGB4	ENST00000519684	human	ensembl	74_37	+1	known	missense	c.201	p.D67E	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB4	HGNC	ENSG00000176256				281	1	0.35461	74	22	22.9167
C1orf216	0	genome.wustl.edu	37	1	36181267	36181267	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	36181267	36181267	C	G	SNP	C1orf216	ENST00000270815	human	ensembl	74_37	-1	known	missense	c.656	p.R219T	0.999	NULL	NULL	-	no_errors	C1orf216	HGNC	ENSG00000142686				136	0	0	40	18	31.0345
TP73	0	genome.wustl.edu	37	1	3638768	3638768	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	3638768	3638768	G	T	SNP	TP73	ENST00000378295	human	ensembl	74_37	+1	known	nonsense	c.613	p.E205*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP73	HGNC	ENSG00000078900				76	0	0	18	8	30.7692
MTF1	0	genome.wustl.edu	37	1	38288031	38288031	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	38288031	38288031	G	A	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	missense	c.1529	p.A510V	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				62	0	0	26	6	18.75
ENSG00000230615	0	genome.wustl.edu	37	1	44569151	44569151	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	44569151	44569151	G	A	SNP	ENSG00000230615	ENST00000434244	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.051	-	-	-	no_errors	RP5-1198O20.4	Clone_based_vega_gene	ENSG00000230615				44	0	0	23	7	23.3333
POMGNT1	0	genome.wustl.edu	37	1	46662468	46662468	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	46662468	46662468	G	A	SNP	POMGNT1	ENST00000371986	human	ensembl	74_37	-1	known	missense	c.289	p.R97W	0.957	NULL	pfam_Glyco_trans_13	-	no_errors	POMGNT1	HGNC	ENSG00000085998				203	0	0	45	19	29.6875
EFCAB14	0	genome.wustl.edu	37	1	47148911	47148911	+	RNA	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	47148911	47148911	A	T	SNP	EFCAB14	ENST00000459797	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	EFCAB14	HGNC	ENSG00000159658				89	0	0	14	10	41.6667
LRP8	0	genome.wustl.edu	37	1	53724104	53724104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	53724104	53724104	C	T	SNP	LRP8	ENST00000306052	human	ensembl	74_37	-1	known	missense	c.2096	p.G699D	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP8	HGNC	ENSG00000157193				163	0	0	44	17	27.8689
SEC31B	0	genome.wustl.edu	37	10	102247821	102247821	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	102247821	102247821	C	T	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.3323	p.R1108H	0.930	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826				62	0	0	15	4	21.0526
PITX3	0	genome.wustl.edu	37	10	103990823	103990823	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	103990823	103990823	C	T	SNP	PITX3	ENST00000370002	human	ensembl	74_37	-1	known	silent	c.357	p.K119	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX3	HGNC	ENSG00000107859				29	0	0	16	3	15.7895
GSTO1	0	genome.wustl.edu	37	10	106019439	106019439	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	106019439	106019439	C	T	SNP	GSTO1	ENST00000369713	human	ensembl	74_37	+1	known	silent	c.249	p.I83	0.972	pfam_Glutathione_S-Trfase_N,superfamily_Thioredoxin-like_fold	pfam_GST_C,pfam_Glutathione_S-Trfase_N,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_GST_omega	-	no_errors	GSTO1	HGNC	ENSG00000148834				143	0	0	37	16	30.1887
SORCS3	0	genome.wustl.edu	37	10	107007078	107007078	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	107007078	107007078	G	C	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.3094	p.A1032P	1.000	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				77	0	0	28	4	12.5
DCLRE1A	0	genome.wustl.edu	37	10	115602170	115602170	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	115602170	115602170	A	C	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	missense	c.2597	p.V866G	1.000	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924				275	0	0	75	19	20.2128
INPP5F	0	genome.wustl.edu	37	10	121586986	121586986	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	121586986	121586986	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	silent	c.3093	p.A1031	0.000	NULL	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				260	0	0	91	30	24.7934
CHST15	0	genome.wustl.edu	37	10	125769672	125769672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	125769672	125769672	G	A	SNP	CHST15	ENST00000346248	human	ensembl	74_37	-1	known	missense	c.1679	p.T560M	0.994	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				92	0	0	33	4	10.8108
CTBP2	0	genome.wustl.edu	37	10	126692055	126692055	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	126692055	126692055	C	T	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	missense	c.1685	p.R562H	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				44	0	0	17	5	22.7273
C10orf90	0	genome.wustl.edu	37	10	128192684	128192684	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	128192684	128192684	C	T	SNP	C10orf90	ENST00000544758	human	ensembl	74_37	-1	known	nonsense	c.1376	p.W459*	0.797	NULL	NULL	-	no_errors	C10orf90	HGNC	ENSG00000154493				117	0	0	40	8	16.6667
APBB1IP	0	genome.wustl.edu	37	10	26790049	26790049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	26790049	26790049	G	A	SNP	APBB1IP	ENST00000356785	human	ensembl	74_37	+1	known	missense	c.462	p.M154I	0.000	NULL	NULL	-	no_errors	APBB1IP	HGNC	ENSG00000077420				213	0	0	78	24	23.5294
SVIL	0	genome.wustl.edu	37	10	29839533	29839533	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	29839533	29839533	G	A	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	nonsense	c.820	p.R274*	0.910	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				28	0	0	20	3	13.0435
C10orf128	0	genome.wustl.edu	37	10	50374978	50374978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	50374978	50374978	C	T	SNP	C10orf128	ENST00000374151	human	ensembl	74_37	-1	known	missense	c.174	p.M58I	1.000	NULL	NULL	-	no_errors	C10orf128	HGNC	ENSG00000204161				139	0	0	51	9	15
ERCC6	0	genome.wustl.edu	37	10	50690777	50690777	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	50690777	50690777	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	missense	c.2125	p.V709I	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830				122	0	0	24	20	45.4545
LRRTM3	0	genome.wustl.edu	37	10	68687592	68687592	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	68687592	68687592	C	A	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.918	p.D306E	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739				219	0	0	72	11	13.253
CDH23	0	genome.wustl.edu	37	10	73437442	73437442	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	73437442	73437442	C	T	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.1759	p.R587W	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736				8	0	0	6	3	33.3333
ITIH5	0	genome.wustl.edu	37	10	7683969	7683969	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	7683969	7683969	G	T	SNP	ITIH5	ENST00000256861	human	ensembl	74_37	-1	known	missense	c.220	p.L74M	0.990	pfam_VIT,smart_VIT	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243				145	0	0	53	8	13.1148
HELLS	0	genome.wustl.edu	37	10	96341223	96341223	+	Silent	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	96341223	96341223	A	G	SNP	HELLS	ENST00000371332	human	ensembl	74_37	+1	known	silent	c.1173	p.S391	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	HELLS	HGNC	ENSG00000119969				52	0	0	19	2	9.52381
NLRX1	0	genome.wustl.edu	37	11	119044606	119044606	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	119044606	119044606	G	A	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	silent	c.648	p.V216	1.000	superfamily_P-loop_NTPase,pfscan_NACHT_NTPase	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				84	0	0	44	16	26.6667
TECTA	0	genome.wustl.edu	37	11	121023647	121023647	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	121023647	121023647	G	A	SNP	TECTA	ENST00000264037	human	ensembl	74_37	+1	known	missense	c.4163	p.R1388H	1.000	pfam_TIL_dom,superfamily_TIL_dom,smart_EG-like_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_ZP_dom,pfam_Nidogen_extracell_dom,pfam_TIL_dom,superfamily_TIL_dom,smart_Nidogen_extracell_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_ZP_dom,pfscan_ZP_dom	-	no_errors	TECTA	HGNC	ENSG00000109927				139	0	0	56	16	22.2222
SLC5A12	0	genome.wustl.edu	37	11	26720006	26720006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	26720006	26720006	G	A	SNP	SLC5A12	ENST00000396005	human	ensembl	74_37	-1	known	missense	c.898	p.H300Y	0.005	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A12	HGNC	ENSG00000148942				133	0	0	39	10	20.4082
CCDC34	0	genome.wustl.edu	37	11	27371796	27371796	+	Nonstop_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	27371796	27371796	T	G	SNP	CCDC34	ENST00000317945	human	ensembl	74_37	-1	known	nonstop	c.689	p.*230S	0.000	NULL	NULL	-	no_errors	CCDC34	HGNC	ENSG00000109881				108	0	0	25	11	30.5556
LGR4	0	genome.wustl.edu	37	11	27393907	27393907	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	27393907	27393907	A	T	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	missense	c.1418	p.F473Y	1.000	NULL	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213				137	0	0	39	7	15.2174
OR4A5	0	genome.wustl.edu	37	11	51412296	51412296	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	51412296	51412296	A	C	SNP	OR4A5	ENST00000319760	human	ensembl	74_37	-1	known	missense	c.100	p.L34V	0.028	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A5	HGNC	ENSG00000221840				71	0	0	33	9	21.4286
OR52A4	0	genome.wustl.edu	37	11	5142935	5142935	+	RNA	SNP	T	T	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	5142935	5142935	T	A	SNP	OR52A4	ENST00000481634	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	OR52A4	HGNC	ENSG00000205494				10	0	0	7	5	41.6667
OR5D18	0	genome.wustl.edu	37	11	55587542	55587542	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	55587542	55587542	T	G	SNP	OR5D18	ENST00000333976	human	ensembl	74_37	+1	known	missense	c.437	p.V146G	0.005	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5D18	HGNC	ENSG00000186119				290	1	0.343643	101	15	12.931
SUV420H1	0	genome.wustl.edu	37	11	67938756	67938756	+	Silent	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	67938756	67938756	G	T	SNP	SUV420H1	ENST00000441488	human	ensembl	74_37	-1	known	silent	c.828	p.I276	0.272	NULL	NULL	-	no_errors	SUV420H1	HGNC	ENSG00000110066				51	0	0	20	2	9.09091
TENM4	0	genome.wustl.edu	37	11	78381536	78381536	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	78381536	78381536	G	A	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.5854	p.R1952C	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256				148	0	0	33	27	45
FAT3	0	genome.wustl.edu	37	11	92088390	92088390	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	92088390	92088390	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.3112	p.L1038F	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				75	0	0	24	7	22.5806
ANKS1B	0	genome.wustl.edu	37	12	100200244	100200244	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	100200244	100200244	G	A	SNP	ANKS1B	ENST00000329257	human	ensembl	74_37	-1	known	missense	c.607	p.R203C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_PTB/PI_dom,pfam_SAM_2,pfam_PTB,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,smart_PTB/PI_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PTB/PI_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS1B	HGNC	ENSG00000185046				86	0	0	26	14	35
DAO	0	genome.wustl.edu	37	12	109278977	109278977	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	109278977	109278977	G	A	SNP	DAO	ENST00000228476	human	ensembl	74_37	+1	known	splice_site	c.194+1	e1+1	1.000	-	-	-	no_errors	DAO	HGNC	ENSG00000110887				161	0	0	86	21	19.6262
TPCN1	0	genome.wustl.edu	37	12	113706632	113706632	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	113706632	113706632	G	A	SNP	TPCN1	ENST00000541517	human	ensembl	74_37	+1	known	missense	c.830	p.R277H	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TPCN1	HGNC	ENSG00000186815				83	0	0	17	19	52.7778
PRB2	0	genome.wustl.edu	37	12	11546745	11546745	+	Silent	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	11546745	11546745	A	C	SNP	PRB2	ENST00000389362	human	ensembl	74_37	-1	known	silent	c.267	p.P89	0.278	NULL	NULL	-	no_errors	PRB2	HGNC	ENSG00000121335				914	0	0	408	58	12.4464
EMP1	0	genome.wustl.edu	37	12	13366432	13366432	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	13366432	13366432	C	T	SNP	EMP1	ENST00000256951	human	ensembl	74_37	+1	known	missense	c.98	p.T33M	0.000	pfam_PMP22/EMP/MP20/Claudin,prints_EMP_1	pfam_PMP22/EMP/MP20/Claudin,prints_PMP22_EMP_MP20,prints_EMP_1	-	no_errors	EMP1	HGNC	ENSG00000134531				102	0	0	29	8	21.6216
ATF7IP	0	genome.wustl.edu	37	12	14613718	14613718	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	14613718	14613718	C	A	SNP	ATF7IP	ENST00000261168	human	ensembl	74_37	+1	known	missense	c.2448	p.F816L	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ATF7IP	HGNC	ENSG00000171681				181	0	0	44	26	37.1429
LDHB	0	genome.wustl.edu	37	12	21807507	21807507	+	Silent	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	21807507	21807507	A	T	SNP	LDHB	ENST00000350669	human	ensembl	74_37	-1	known	silent	c.99	p.G33	0.515	pfam_Lactate/malate_DH_N,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	pfam_Lactate/malate_DH_N,pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C,pirsf_L-lactate/malate_DH,prints_L-lactate/malate_DH,tigrfam_L-lactate_DH	-	no_errors	LDHB	HGNC	ENSG00000111716				203	0	0	54	13	19.403
IFLTD1	0	genome.wustl.edu	37	12	25702400	25702400	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	25702400	25702400	A	C	SNP	IFLTD1	ENST00000458174	human	ensembl	74_37	-1	known	missense	c.170	p.L57W	0.000	NULL	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC	ENSG00000152936				130	0	0	29	10	25.641
CNTN1	0	genome.wustl.edu	37	12	41386999	41386999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	41386999	41386999	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.2041	p.V681M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				134	0	0	44	13	22.807
KRT74	0	genome.wustl.edu	37	12	52967407	52967407	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	52967407	52967407	C	A	SNP	KRT74	ENST00000305620	human	ensembl	74_37	-1	known	missense	c.155	p.S52I	0.233	NULL	pfam_IF,prints_Keratin_II	-	no_errors	KRT74	HGNC	ENSG00000170484				133	0	0	37	31	45.5882
HOXC4	0	genome.wustl.edu	37	12	54447817	54447817	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	54447817	54447817	C	T	SNP	HOXC4	ENST00000430889	human	ensembl	74_37	+1	known	silent	c.111	p.Y37	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXC4	Uniprot_gn	ENSG00000273266				384	0	0	128	51	28.4916
NCKAP1L	0	genome.wustl.edu	37	12	54932722	54932722	+	Silent	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	54932722	54932722	A	C	SNP	NCKAP1L	ENST00000293373	human	ensembl	74_37	+1	known	silent	c.3238	p.R1080	0.998	pfam_Nck-associated_protein-1	pfam_Nck-associated_protein-1,superfamily_Nucl_hormone_rcpt_ligand-bd	-	no_errors	NCKAP1L	HGNC	ENSG00000123338				95	0	0	27	8	22.8571
TRHDE	0	genome.wustl.edu	37	12	72956687	72956687	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	72956687	72956687	A	T	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.1774	p.T592S	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				131	0	0	30	18	37.5
NALCN	0	genome.wustl.edu	37	13	101759837	101759837	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	13	101759837	101759837	C	T	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	splice_site	c.2579+1	e21+1	1.000	-	-	-	no_errors	NALCN	HGNC	ENSG00000102452				125	0	0	55	10	15.3846
COL4A1	0	genome.wustl.edu	37	13	110804813	110804813	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	13	110804813	110804813	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.4796	p.A1599V	1.000	pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				30	0	0	26	6	18.75
MLNR	0	genome.wustl.edu	37	13	49795146	49795146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	13	49795146	49795146	G	A	SNP	MLNR	ENST00000218721	human	ensembl	74_37	+1	known	missense	c.673	p.A225T	0.004	pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_GHS-R	-	no_errors	MLNR	HGNC	ENSG00000102539				34	0	0	13	32	71.1111
DZIP1	0	genome.wustl.edu	37	13	96237002	96237002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	13	96237002	96237002	G	A	SNP	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	missense	c.2512	p.P838S	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				271	0	0	106	27	20.3008
SNORD9	0	genome.wustl.edu	37	14	21860369	21860369	+	RNA	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	21860369	21860369	C	T	SNP	SNORD9	ENST00000362566	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.776	-	-	-	no_errors	SNORD9	HGNC	ENSG00000199436				102	0	0	45	12	21.0526
SOS2	0	genome.wustl.edu	37	14	50628209	50628209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	50628209	50628209	C	T	SNP	SOS2	ENST00000216373	human	ensembl	74_37	-1	known	missense	c.1187	p.R396H	0.999	superfamily_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS2	HGNC	ENSG00000100485				123	1	0.806452	72	8	10
KCNH5	0	genome.wustl.edu	37	14	63447746	63447746	+	Silent	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	63447746	63447746	G	T	SNP	KCNH5	ENST00000322893	human	ensembl	74_37	-1	known	silent	c.786	p.I262	0.962	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH5	HGNC	ENSG00000140015				94	0	0	37	10	21.2766
PLEKHG3	0	genome.wustl.edu	37	14	65197573	65197573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	65197573	65197573	G	A	SNP	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	missense	c.623	p.R208Q	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				75	0	0	31	8	20.5128
SIPA1L1	0	genome.wustl.edu	37	14	72055143	72055143	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	72055143	72055143	T	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.554	p.V185E	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				158	0	0	64	22	25.5814
SAMD15	0	genome.wustl.edu	37	14	77844277	77844277	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	77844277	77844277	G	A	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	silent	c.516	p.S172	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583				203	0	0	141	37	20.7865
FLRT2	0	genome.wustl.edu	37	14	86088325	86088325	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	86088325	86088325	G	T	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.467	p.R156L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				90	0	0	32	9	21.9512
SNHG14	0	genome.wustl.edu	37	15	25304862	25304862	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	25304862	25304862	G	A	SNP	SNHG14	ENST00000549804	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				72	0	0	20	11	35.4839
ATP10A	0	genome.wustl.edu	37	15	25959366	25959366	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	25959366	25959366	T	G	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.1799	p.K600T	1.000	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				103	0	0	42	5	10.6383
HERC2	0	genome.wustl.edu	37	15	28473509	28473509	+	Silent	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	28473509	28473509	T	C	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.5319	p.S1773	0.004	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				59	0	0	26	5	16.129
RYR3	0	genome.wustl.edu	37	15	33855184	33855184	+	Silent	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	33855184	33855184	T	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	silent	c.1119	p.T373	0.035	pfam_MIR_motif,superfamily_MIR_motif	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				202	0	0	61	17	21.7949
RYR3	0	genome.wustl.edu	37	15	33925173	33925173	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	33925173	33925173	A	G	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.2891	p.K964R	1.000	pfam_Ryanodine_rcpt	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				112	0	0	32	7	17.9487
TMC3	0	genome.wustl.edu	37	15	81625267	81625267	+	Silent	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	15	81625267	81625267	G	T	SNP	TMC3	ENST00000359440	human	ensembl	74_37	-1	known	silent	c.2796	p.V932	0.000	NULL	pfam_TMC	-	no_errors	TMC3	HGNC	ENSG00000188869				67	0	0	33	15	31.25
TPSAB1	0	genome.wustl.edu	37	16	1291454	1291454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	1291454	1291454	G	A	SNP	TPSAB1	ENST00000338844	human	ensembl	74_37	+1	known	missense	c.253	p.A85T	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TPSAB1	HGNC	ENSG00000172236				18	0	0	11	3	21.4286
CLCN7	0	genome.wustl.edu	37	16	1500502	1500502	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	1500502	1500502	G	A	SNP	CLCN7	ENST00000382745	human	ensembl	74_37	-1	known	missense	c.1613	p.A538V	0.911	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,smart_CBS_dom,prints_Cl-channel_volt-gated,prints_Cl_channel-7	-	no_errors	CLCN7	HGNC	ENSG00000103249				23	0	0	11	4	26.6667
HS3ST6	0	genome.wustl.edu	37	16	1961987	1961987	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	1961987	1961987	G	A	SNP	HS3ST6	ENST00000293937	human	ensembl	74_37	-1	known	silent	c.633	p.H211	0.966	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST6	HGNC	ENSG00000162040				60	0	0	30	12	28.5714
ACSM2A	0	genome.wustl.edu	37	16	20491926	20491926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	20491926	20491926	G	A	SNP	ACSM2A	ENST00000219054	human	ensembl	74_37	+1	known	missense	c.1313	p.R438Q	0.683	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM2A	HGNC	ENSG00000183747				274	0	0	78	23	22.7723
ITGAL	0	genome.wustl.edu	37	16	30506112	30506112	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	30506112	30506112	G	A	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	missense	c.1444	p.A482T	1.000	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844				152	0	0	61	11	15.2778
THOC6	0	genome.wustl.edu	37	16	3076271	3076271	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	3076271	3076271	G	A	SNP	THOC6	ENST00000326266	human	ensembl	74_37	+1	known	missense	c.344	p.R115H	0.003	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	THOC6	HGNC	ENSG00000131652				87	0	0	30	23	43.3962
NKD1	0	genome.wustl.edu	37	16	50667336	50667336	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	50667336	50667336	G	A	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	missense	c.1057	p.G353S	0.998	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				127	0	0	62	11	15.0685
C16orf89	0	genome.wustl.edu	37	16	5112558	5112558	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	5112558	5112558	G	A	SNP	C16orf89	ENST00000350219	human	ensembl	74_37	-1	known	missense	c.340	p.R114W	0.114	NULL	NULL	-	no_errors	C16orf89	HGNC	ENSG00000153446				135	0	0	29	5	14.7059
CCDC135	0	genome.wustl.edu	37	16	57756726	57756726	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	57756726	57756726	C	T	SNP	CCDC135	ENST00000360716	human	ensembl	74_37	+1	known	missense	c.1381	p.R461C	0.957	NULL	NULL	-	no_errors	CCDC135	HGNC	ENSG00000159625				127	0	0	70	21	23.0769
CDH8	0	genome.wustl.edu	37	16	62055298	62055298	+	Silent	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	62055298	62055298	G	T	SNP	CDH8	ENST00000577390	human	ensembl	74_37	-1	known	silent	c.10	p.R4	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394				138	0	0	38	17	30.9091
CES2	0	genome.wustl.edu	37	16	66974528	66974528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	66974528	66974528	G	A	SNP	CES2	ENST00000317091	human	ensembl	74_37	+1	known	missense	c.938	p.G313E	0.030	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES2	HGNC	ENSG00000172831				147	0	0	75	22	22.6804
TSNAXIP1	0	genome.wustl.edu	37	16	67860070	67860070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	67860070	67860070	G	A	SNP	TSNAXIP1	ENST00000388833	human	ensembl	74_37	+1	known	missense	c.998	p.G333D	0.993	NULL	NULL	-	no_errors	TSNAXIP1	HGNC	ENSG00000102904				72	0	0	41	7	14.5833
CDH13	0	genome.wustl.edu	37	16	83781732	83781732	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	83781732	83781732	C	A	SNP	CDH13	ENST00000566620	human	ensembl	74_37	+1	known	missense	c.1558	p.P520T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH13	HGNC	ENSG00000140945				316	0	0	96	25	20.6612
LMF1	0	genome.wustl.edu	37	16	904564	904564	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	904564	904564	C	A	SNP	LMF1	ENST00000262301	human	ensembl	74_37	-1	known	missense	c.1672	p.D558Y	0.787	NULL	pfam_LMF	-	no_errors	LMF1	HGNC	ENSG00000103227				23	0	0	15	4	21.0526
C16orf72	0	genome.wustl.edu	37	16	9210632	9210632	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	16	9210632	9210632	G	T	SNP	C16orf72	ENST00000327827	human	ensembl	74_37	+1	known	missense	c.691	p.D231Y	1.000	NULL	NULL	-	no_errors	C16orf72	HGNC	ENSG00000182831				223	0	0	68	24	26.087
ACACA	0	genome.wustl.edu	37	17	35545334	35545334	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	35545334	35545334	G	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	silent	c.4659	p.N1553	1.000	pfam_AcCoA_COase_cen	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142				109	0	0	60	8	11.7647
TCAP	0	genome.wustl.edu	37	17	37822027	37822027	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	37822027	37822027	T	C	SNP	TCAP	ENST00000309889	human	ensembl	74_37	+1	known	missense	c.169	p.C57R	1.000	pfam_Telethonin	pfam_Telethonin	-	no_errors	TCAP	HGNC	ENSG00000173991				19	0	0	1824	299	14.0838
TCAP	0	genome.wustl.edu	37	17	37822029	37822029	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	37822029	37822029	C	G	SNP	TCAP	ENST00000309889	human	ensembl	74_37	+1	known	missense	c.171	p.C57W	1.000	pfam_Telethonin	pfam_Telethonin	-	no_errors	TCAP	HGNC	ENSG00000173991				19	0	0	1840	268	12.7135
ACLY	0	genome.wustl.edu	37	17	40065790	40065790	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	40065790	40065790	A	T	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	nonsense	c.509	p.L170*	0.997	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				185	0	0	86	95	52.4862
ACLY	0	genome.wustl.edu	37	17	40065791	40065791	+	Silent	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	40065791	40065791	A	G	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	silent	c.508	p.L170	0.669	pfam_ATP-grasp_succ-CoA_synth-type,pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				184	0	0	84	180	68.1818
ACLY	0	genome.wustl.edu	37	17	40070121	40070121	+	Silent	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	40070121	40070121	C	A	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	silent	c.6	p.S2	0.018	pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				229	0	0	111	260	70.0809
ACLY	0	genome.wustl.edu	37	17	40070122	40070122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	40070122	40070122	G	A	SNP	ACLY	ENST00000352035	human	ensembl	74_37	-1	known	missense	c.5	p.S2L	1.000	pirsf_ATP-citrate_synthase	pfam_Citrate_synthase-like,pfam_CoA_ligase,pfam_CoA-bd,pfam_ATP-grasp_succ-CoA_synth-type,superfamily_Citrate_synthase-like_core,superfamily_Succinyl-CoA_synth-like,smart_CoA-bd,pirsf_ATP-citrate_synthase	-	no_errors	ACLY	HGNC	ENSG00000131473				225	0	0	108	114	51.3514
TTC25	0	genome.wustl.edu	37	17	40093094	40093094	+	RNA	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	40093094	40093094	C	T	SNP	TTC25	ENST00000377540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	TTC25	HGNC	ENSG00000204815				202	1	0.492611	109	31	22.1429
ALOX15	0	genome.wustl.edu	37	17	4540419	4540419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	4540419	4540419	C	T	SNP	ALOX15	ENST00000545513	human	ensembl	74_37	-1	known	missense	c.1008	p.M336I	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15	HGNC	ENSG00000161905				181	0	0	39	24	38.0952
ABCA8	0	genome.wustl.edu	37	17	66873741	66873741	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	66873741	66873741	T	G	SNP	ABCA8	ENST00000430352	human	ensembl	74_37	-1	known	missense	c.4118	p.N1373T	0.985	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA8	HGNC	ENSG00000141338				277	0	0	143	38	20.9945
ABCA5	0	genome.wustl.edu	37	17	67257396	67257396	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	67257396	67257396	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.3437	p.A1146V	0.994	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				75	0	0	17	8	32
TP53	0	genome.wustl.edu	37	17	7578524	7578524	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	17	7578524	7578524	G	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.406	p.Q136E	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				74	0	0	11	23	67.6471
ASXL3	0	genome.wustl.edu	37	18	31323566	31323566	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	31323566	31323566	C	A	SNP	ASXL3	ENST00000269197	human	ensembl	74_37	+1	known	missense	c.3754	p.H1252N	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL3	HGNC	ENSG00000141431				113	0	0	21	10	32.2581
DCC	0	genome.wustl.edu	37	18	50976898	50976898	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	50976898	50976898	G	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	silent	c.3258	p.P1086	0.050	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				112	0	0	27	7	20.5882
NETO1	0	genome.wustl.edu	37	18	70451126	70451126	+	Silent	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	70451126	70451126	A	G	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	silent	c.655	p.L219	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				237	0	0	73	14	16.092
ZNF236	0	genome.wustl.edu	37	18	74607115	74607115	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	74607115	74607115	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.1558	p.A520T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856				171	0	0	76	53	41.0853
RALBP1	0	genome.wustl.edu	37	18	9513171	9513171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	9513171	9513171	G	A	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	missense	c.128	p.R43H	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				106	0	0	33	6	15.3846
RALBP1	0	genome.wustl.edu	37	18	9517284	9517284	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	9517284	9517284	G	A	SNP	RALBP1	ENST00000019317	human	ensembl	74_37	+1	known	missense	c.686	p.G229D	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797				81	0	0	19	8	29.6296
COL5A3	0	genome.wustl.edu	37	19	10081312	10081312	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	10081312	10081312	G	T	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	missense	c.3922	p.P1308T	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573				10	0	0	5	6	54.5455
ZSWIM4	0	genome.wustl.edu	37	19	13919781	13919781	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	13919781	13919781	C	T	SNP	ZSWIM4	ENST00000254323	human	ensembl	74_37	+1	known	missense	c.844	p.R282C	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM4	HGNC	ENSG00000132003				23	0	0	17	6	26.087
ONECUT3	0	genome.wustl.edu	37	19	1754826	1754826	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	1754826	1754826	C	A	SNP	ONECUT3	ENST00000382349	human	ensembl	74_37	+1	known	missense	c.1165	p.Q389K	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	ONECUT3	HGNC	ENSG00000205922				20	0	0	6	5	45.4545
UPF1	0	genome.wustl.edu	37	19	18965495	18965495	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	18965495	18965495	G	A	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	silent	c.1275	p.V425	1.000	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				273	0	0	116	27	18.8811
NCAN	0	genome.wustl.edu	37	19	19359609	19359609	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	19359609	19359609	A	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.3738	p.E1246D	0.665	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287				101	0	0	49	9	15.5172
SUGP1	0	genome.wustl.edu	37	19	19391068	19391068	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	19391068	19391068	C	T	SNP	SUGP1	ENST00000247001	human	ensembl	74_37	-1	known	missense	c.1276	p.G426R	1.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705				165	0	0	74	9	10.8434
ZNF730	0	genome.wustl.edu	37	19	23328967	23328967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	23328967	23328967	G	A	SNP	ZNF730	ENST00000597761	human	ensembl	74_37	+1	known	missense	c.1121	p.G374D	0.981	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF730	HGNC	ENSG00000183850				40	0	0	21	6	22.2222
TSHZ3	0	genome.wustl.edu	37	19	31769898	31769898	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	31769898	31769898	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	silent	c.801	p.G267	0.747	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				322	0	0	116	32	21.6216
SERTAD1	0	genome.wustl.edu	37	19	40929446	40929446	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	40929446	40929446	C	T	SNP	SERTAD1	ENST00000357949	human	ensembl	74_37	-1	known	missense	c.8	p.S3N	1.000	NULL	pfam_SERTA,pfscan_SERTA	-	no_errors	SERTAD1	HGNC	ENSG00000197019				101	0	0	38	15	28.3019
PNMAL2	0	genome.wustl.edu	37	19	46997623	46997623	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	46997623	46997623	T	C	SNP	PNMAL2	ENST00000599531	human	ensembl	74_37	-1	known	missense	c.1100	p.D367G	0.001	NULL	NULL	-	no_errors	PNMAL2	HGNC	ENSG00000204851				128	0	0	51	17	25
SYT3	0	genome.wustl.edu	37	19	51128454	51128454	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	51128454	51128454	G	A	SNP	SYT3	ENST00000338916	human	ensembl	74_37	-1	known	missense	c.1672	p.R558C	0.997	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT3	HGNC	ENSG00000213023				21	0	0	10	4	28.5714
SHANK1	0	genome.wustl.edu	37	19	51192573	51192573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	51192573	51192573	G	A	SNP	SHANK1	ENST00000391813	human	ensembl	74_37	-1	known	missense	c.89	p.P30L	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK1	HGNC	ENSG00000161681				63	0	0	28	6	17.6471
ZNF765	0	genome.wustl.edu	37	19	53912160	53912160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	53912160	53912160	C	T	SNP	ZNF765	ENST00000396408	human	ensembl	74_37	+1	known	missense	c.1352	p.S451L	0.041	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF765	HGNC	ENSG00000196417				174	0	0	49	15	23.4375
LAIR1	0	genome.wustl.edu	37	19	54875910	54875910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	54875910	54875910	G	A	SNP	LAIR1	ENST00000391742	human	ensembl	74_37	-1	known	missense	c.62	p.T21M	0.001	NULL	smart_Ig_sub	-	no_errors	LAIR1	HGNC	ENSG00000167613				95	0	0	28	20	41.6667
KIR3DX1	0	genome.wustl.edu	37	19	55045223	55045223	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	55045223	55045223	G	A	SNP	KIR3DX1	ENST00000335056	human	ensembl	74_37	+1	known	missense	c.343	p.V115I	0.003	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	KIR3DX1	HGNC	ENSG00000104970				79	0	0	32	7	17.9487
NLRP7	0	genome.wustl.edu	37	19	55446019	55446019	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	55446019	55446019	C	T	SNP	NLRP7	ENST00000446217	human	ensembl	74_37	-1	known	missense	c.2393	p.G798D	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP7	HGNC	ENSG00000167634				41	0	0	24	10	29.4118
CD70	0	genome.wustl.edu	37	19	6586225	6586225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	6586225	6586225	C	T	SNP	CD70	ENST00000245903	human	ensembl	74_37	-1	known	missense	c.388	p.V130M	0.182	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	-	no_errors	CD70	HGNC	ENSG00000125726				90	0	0	46	15	24.5902
MUC16	0	genome.wustl.edu	37	19	9087510	9087510	+	Silent	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	9087510	9087510	A	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.4305	p.T1435	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				184	0	0	80	21	20.7921
SLC5A7	0	genome.wustl.edu	37	2	108618467	108618467	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	108618467	108618467	T	C	SNP	SLC5A7	ENST00000264047	human	ensembl	74_37	+1	known	missense	c.712	p.Y238H	1.000	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	pfam_Na/solute_symporter,pfscan_Na/solute_symporter	-	no_errors	SLC5A7	HGNC	ENSG00000115665				103	0	0	35	9	20.4545
CNTNAP5	0	genome.wustl.edu	37	2	125281973	125281973	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	125281973	125281973	C	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.1418	p.P473Q	0.423	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				78	0	0	50	3	5.66038
CNTNAP5	0	genome.wustl.edu	37	2	125530594	125530594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	125530594	125530594	G	T	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.2749	p.G917W	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				182	0	0	79	9	10.2273
THSD7B	0	genome.wustl.edu	37	2	137814207	137814207	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	137814207	137814207	C	T	SNP	THSD7B	ENST00000272643	human	ensembl	74_37	+1	known	silent	c.357	p.Y119	0.000	superfamily_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7B	HGNC	ENSG00000144229				55	0	0	51	8	13.5593
LRP1B	0	genome.wustl.edu	37	2	141004684	141004684	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	141004684	141004684	T	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13295	p.K4432R	1.000	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				74	0	0	19	5	20.8333
SCN3A	0	genome.wustl.edu	37	2	166021016	166021016	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	166021016	166021016	C	A	SNP	SCN3A	ENST00000283254	human	ensembl	74_37	-1	known	missense	c.488	p.G163V	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN3A	HGNC	ENSG00000153253				78	0	0	19	4	17.3913
SCN2A	0	genome.wustl.edu	37	2	166229777	166229777	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	166229777	166229777	G	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	nonsense	c.3892	p.E1298*	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531				203	0	0	70	29	29.2929
XIRP2	0	genome.wustl.edu	37	2	168101416	168101416	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	168101416	168101416	G	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3514	p.E1172Q	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				126	0	0	40	10	20
DLX2	0	genome.wustl.edu	37	2	172965545	172965545	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	172965545	172965545	G	A	SNP	DLX2	ENST00000234198	human	ensembl	74_37	-1	known	missense	c.713	p.P238L	1.000	NULL	pfam_Homeobox_dom,pfam_Distal-less_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX2	HGNC	ENSG00000115844				23	0	0	20	3	13.0435
HOXD12	0	genome.wustl.edu	37	2	176965305	176965305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	176965305	176965305	G	A	SNP	HOXD12	ENST00000404162	human	ensembl	74_37	+1	novel	missense	c.658	p.E220K	0.281	NULL	NULL	-	no_errors	HOXD12	HGNC	ENSG00000170178				35	0	0	21	4	16
TTN	0	genome.wustl.edu	37	2	179445168	179445168	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	179445168	179445168	G	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.59234	p.T19745S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				131	0	0	51	7	12.069
TTN	0	genome.wustl.edu	37	2	179499302	179499302	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	179499302	179499302	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.34502	p.R11501Q	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				220	0	0	100	18	15.2542
TTN	0	genome.wustl.edu	37	2	179616598	179616598	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	179616598	179616598	A	C	SNP	TTN	ENST00000360870	human	ensembl	74_37	-1	known	missense	c.10529	p.L3510R	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				194	0	0	77	18	18.9474
TNS1	0	genome.wustl.edu	37	2	218712303	218712303	+	Silent	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	218712303	218712303	A	C	SNP	TNS1	ENST00000171887	human	ensembl	74_37	-1	known	silent	c.2562	p.T854	0.033	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS1	HGNC	ENSG00000079308				175	0	0	105	21	16.6667
PLCD4	0	genome.wustl.edu	37	2	219501217	219501217	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	219501217	219501217	T	G	SNP	PLCD4	ENST00000417849	human	ensembl	74_37	+1	known	missense	c.2206	p.S736A	1.000	superfamily_C2_dom	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556				129	0	0	93	17	15.4545
CCDC108	0	genome.wustl.edu	37	2	219892515	219892515	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	219892515	219892515	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	nonsense	c.2068	p.R690*	0.000	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378				99	0	0	52	34	39.5349
TUBA4B	0	genome.wustl.edu	37	2	220136170	220136170	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	220136170	220136170	G	A	SNP	TUBA4B	ENST00000490341	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910				187	1	0.531915	71	38	34.8624
OBSL1	0	genome.wustl.edu	37	2	220431630	220431630	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	220431630	220431630	C	T	SNP	OBSL1	ENST00000404537	human	ensembl	74_37	-1	known	missense	c.2056	p.V686I	0.003	smart_Ig_sub	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	OBSL1	HGNC	ENSG00000124006				74	0	0	31	6	16.2162
SPHKAP	0	genome.wustl.edu	37	2	228846563	228846563	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	228846563	228846563	A	G	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.4973	p.V1658A	1.000	pfam_AKAP_110_C	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				86	0	0	33	13	28.2609
CHRNG	0	genome.wustl.edu	37	2	233407734	233407734	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	233407734	233407734	C	T	SNP	CHRNG	ENST00000389494	human	ensembl	74_37	+1	known	silent	c.747	p.I249	0.217	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNG	HGNC	ENSG00000196811				293	0	0	126	23	15.4362
DNAJB3	0	genome.wustl.edu	37	2	234652296	234652296	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	234652296	234652296	G	A	SNP	DNAJB3	ENST00000449667	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802				261	1	0.381679	133	31	18.9024
HJURP	0	genome.wustl.edu	37	2	234750289	234750289	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	234750289	234750289	C	T	SNP	HJURP	ENST00000411486	human	ensembl	74_37	-1	known	silent	c.1137	p.V379	0.002	pfam_HJURP	pfam_HJURP,pfam_HJURP_C,pfam_Centromere_Scm3_N	-	no_errors	HJURP	HGNC	ENSG00000123485				107	0	0	47	11	18.9655
NDUFA10	0	genome.wustl.edu	37	2	240921557	240921557	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	240921557	240921557	C	T	SNP	NDUFA10	ENST00000404554	human	ensembl	74_37	-1	novel	nonsense	c.1079	p.W360*	0.001	pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414				158	0	0	78	20	20.4082
C2orf71	0	genome.wustl.edu	37	2	29296154	29296154	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	29296154	29296154	A	T	SNP	C2orf71	ENST00000331664	human	ensembl	74_37	-1	known	missense	c.974	p.L325Q	0.982	NULL	NULL	-	no_errors	C2orf71	HGNC	ENSG00000179270				210	0	0	89	26	22.6087
SIX2	0	genome.wustl.edu	37	2	45235916	45235916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	45235916	45235916	G	A	SNP	SIX2	ENST00000303077	human	ensembl	74_37	-1	known	missense	c.334	p.R112C	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX2	HGNC	ENSG00000170577				104	0	0	70	14	16.6667
TSPYL6	0	genome.wustl.edu	37	2	54483006	54483006	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	54483006	54483006	C	T	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.283	p.A95T	0.002	NULL	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				79	0	0	48	6	11.1111
EVA1A	0	genome.wustl.edu	37	2	75720569	75720569	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	75720569	75720569	G	A	SNP	EVA1A	ENST00000233712	human	ensembl	74_37	-1	known	silent	c.252	p.S84	0.998	NULL	NULL	-	no_errors	EVA1A	HGNC	ENSG00000115363				105	0	0	48	16	25
ATOH8	0	genome.wustl.edu	37	2	85981598	85981598	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	85981598	85981598	C	A	SNP	ATOH8	ENST00000306279	human	ensembl	74_37	+1	known	missense	c.286	p.R96S	0.854	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH8	HGNC	ENSG00000168874				13	0	0	18	4	18.1818
ASXL1	0	genome.wustl.edu	37	20	31023525	31023525	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	31023525	31023525	G	A	SNP	ASXL1	ENST00000375687	human	ensembl	74_37	+1	known	missense	c.3010	p.D1004N	1.000	NULL	NULL	-	no_errors	ASXL1	HGNC	ENSG00000171456				98	0	0	87	30	25.641
FASTKD5	0	genome.wustl.edu	37	20	3127667	3127667	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	3127667	3127667	G	A	SNP	FASTKD5	ENST00000380266	human	ensembl	74_37	-1	known	silent	c.2050	p.L684	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD5	HGNC	ENSG00000215251				167	0	0	99	20	16.8067
C20orf194	0	genome.wustl.edu	37	20	3236670	3236670	+	Silent	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	3236670	3236670	C	A	SNP	C20orf194	ENST00000252032	human	ensembl	74_37	-1	known	silent	c.3243	p.L1081	0.976	NULL	NULL	-	no_errors	C20orf194	HGNC	ENSG00000088854				98	0	0	67	10	12.987
MMP24	0	genome.wustl.edu	37	20	33862271	33862271	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	33862271	33862271	C	T	SNP	MMP24	ENST00000246186	human	ensembl	74_37	+1	known	silent	c.1797	p.S599	0.961	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP24	HGNC	ENSG00000125966				234	0	0	140	18	11.3924
FAM83D	0	genome.wustl.edu	37	20	37581072	37581072	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	37581072	37581072	C	T	SNP	FAM83D	ENST00000217429	human	ensembl	74_37	+1	known	missense	c.1757	p.T586I	0.570	NULL	pfam_DUF1669	-	no_errors	FAM83D	HGNC	ENSG00000101447				180	0	0	79	18	18.5567
CDC25B	0	genome.wustl.edu	37	20	3783546	3783546	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	3783546	3783546	G	A	SNP	CDC25B	ENST00000495915	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.869	-	-	-	no_errors	CDC25B	HGNC	ENSG00000101224				56	0	0	34	6	15
SALL4	0	genome.wustl.edu	37	20	50407967	50407967	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	50407967	50407967	G	A	SNP	SALL4	ENST00000217086	human	ensembl	74_37	-1	known	missense	c.1055	p.A352V	0.182	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115				84	0	0	53	12	18.4615
MC3R	0	genome.wustl.edu	37	20	54824543	54824543	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	54824543	54824543	G	A	SNP	MC3R	ENST00000243911	human	ensembl	74_37	+1	known	missense	c.644	p.R215Q	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melancort_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melcrt_ACTH_rcpt,prints_Mcort_3_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC3R	HGNC	ENSG00000124089				120	0	0	90	9	9.09091
ZNF831	0	genome.wustl.edu	37	20	57766724	57766724	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	57766724	57766724	G	A	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.650	p.G217E	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				116	0	0	102	15	12.8205
BIRC7	0	genome.wustl.edu	37	20	61869339	61869339	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	61869339	61869339	C	A	SNP	BIRC7	ENST00000217169	human	ensembl	74_37	+1	known	missense	c.434	p.A145D	1.000	pfam_BIR,smart_BIR,pfscan_BIR	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	BIRC7	HGNC	ENSG00000101197				63	0	0	34	5	12.8205
ARFGAP1	0	genome.wustl.edu	37	20	61919114	61919114	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	20	61919114	61919114	C	T	SNP	ARFGAP1	ENST00000353546	human	ensembl	74_37	+1	known	silent	c.1134	p.A378	0.914	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP1	HGNC	ENSG00000101199				23	0	0	19	7	26.9231
MCM3AP	0	genome.wustl.edu	37	21	47685984	47685984	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	21	47685984	47685984	G	A	SNP	MCM3AP	ENST00000291688	human	ensembl	74_37	-1	known	silent	c.2886	p.V962	0.991	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294				403	0	0	126	66	34.375
SCARF2	0	genome.wustl.edu	37	22	20785156	20785156	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	20785156	20785156	G	A	SNP	SCARF2	ENST00000405555	human	ensembl	74_37	-1	known	silent	c.894	p.A298	0.977	superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF2	HGNC	ENSG00000244486				20	0	0	9	4	30.7692
MYH9	0	genome.wustl.edu	37	22	36684873	36684873	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	36684873	36684873	C	T	SNP	MYH9	ENST00000216181	human	ensembl	74_37	-1	known	missense	c.4670	p.R1557Q	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH9	HGNC	ENSG00000100345				217	0	0	94	31	24.8
CYTH4	0	genome.wustl.edu	37	22	37695268	37695268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	37695268	37695268	G	A	SNP	CYTH4	ENST00000248901	human	ensembl	74_37	+1	known	missense	c.355	p.D119N	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH4	HGNC	ENSG00000100055				64	0	0	25	6	19.3548
CBX7	0	genome.wustl.edu	37	22	39516371	39516371	+	RNA	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	39516371	39516371	G	T	SNP	CBX7	ENST00000475962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	CBX7	HGNC	ENSG00000100307				40	0	0	6	4	40
SAMM50	0	genome.wustl.edu	37	22	44392122	44392122	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	44392122	44392122	G	A	SNP	SAMM50	ENST00000493621	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SAMM50	HGNC	ENSG00000100347				451	0	0	159	39	19.697
ATXN10	0	genome.wustl.edu	37	22	46125340	46125340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	46125340	46125340	C	T	SNP	ATXN10	ENST00000252934	human	ensembl	74_37	+1	known	missense	c.764	p.T255M	0.000	superfamily_ARM-type_fold	pfam_Ataxin-10_domain,superfamily_ARM-type_fold	-	no_errors	ATXN10	HGNC	ENSG00000130638				171	0	0	58	18	23.6842
MORC1	0	genome.wustl.edu	37	3	108746704	108746704	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	108746704	108746704	G	T	SNP	MORC1	ENST00000232603	human	ensembl	74_37	-1	known	missense	c.1598	p.P533Q	0.898	NULL	pfam_Znf_CW,superfamily_HATPase_ATP-bd,pfscan_Znf_CW	-	no_errors	MORC1	HGNC	ENSG00000114487				90	0	0	39	7	15.2174
LOC101929734	0	genome.wustl.edu	37	3	113955043	113955043	+	RNA	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	113955043	113955043	C	G	SNP	LOC101929734	ENST00000493033	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	RP11-553L6.2	Clone_based_vega_gene	ENSG00000241490				53	0	0	29	4	12.1212
C3orf30	0	genome.wustl.edu	37	3	118865449	118865449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	118865449	118865449	C	T	SNP	C3orf30	ENST00000295622	human	ensembl	74_37	+1	known	missense	c.413	p.T138M	0.000	NULL	superfamily_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	C3orf30	HGNC	ENSG00000163424				95	0	0	44	10	18.5185
ASTE1	0	genome.wustl.edu	37	3	130733117	130733117	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	130733117	130733117	G	A	SNP	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	silent	c.1824	p.F608	0.010	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533				106	0	0	45	22	32.8358
EPHB1	0	genome.wustl.edu	37	3	134670497	134670497	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	134670497	134670497	A	C	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.408	p.K136N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				251	0	0	124	24	16.2162
EPHB1	0	genome.wustl.edu	37	3	134851755	134851755	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	134851755	134851755	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	silent	c.1161	p.T387	0.001	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				76	0	0	29	33	53.2258
EPHB1	0	genome.wustl.edu	37	3	134884908	134884908	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	134884908	134884908	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	74_37	+1	known	missense	c.1684	p.V562I	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928				157	0	0	82	11	11.828
ZBTB38	0	genome.wustl.edu	37	3	141162920	141162920	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	141162920	141162920	A	G	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.1693	p.K565E	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				103	0	0	53	16	23.1884
ZIC1	0	genome.wustl.edu	37	3	147128475	147128475	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	147128475	147128475	G	A	SNP	ZIC1	ENST00000282928	human	ensembl	74_37	+1	known	silent	c.576	p.P192	0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC1	HGNC	ENSG00000152977				97	0	0	86	14	14
KRT8P12	0	genome.wustl.edu	37	3	160285778	160285778	+	RNA	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	160285778	160285778	C	A	SNP	KRT8P12	ENST00000468527	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.017	-	-	-	no_errors	KRT8P12	HGNC	ENSG00000229320				20	0	0	29	3	9.375
OXNAD1	0	genome.wustl.edu	37	3	16344253	16344253	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	16344253	16344253	C	T	SNP	OXNAD1	ENST00000544043	human	ensembl	74_37	+1	known	missense	c.836	p.T279M	0.991	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6	pfam_OxRdtase_FAD/NAD-bd,pfam_Fe_red_NAD-bd_6,superfamily_Riboflavin_synthase-like_b-brl,prints_Phe_hydroxylase,prints_NADH-Cyt_B5_reductase	-	no_errors	OXNAD1	HGNC	ENSG00000154814				44	0	0	10	3	23.0769
MUC20	0	genome.wustl.edu	37	3	195447871	195447871	+	RNA	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	195447871	195447871	C	T	SNP	MUC20	ENST00000480350	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC20	HGNC	ENSG00000176945				12	0	0	18	4	18.1818
TNK2	0	genome.wustl.edu	37	3	195595338	195595338	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	195595338	195595338	C	T	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.2020	p.A674T	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938				11	0	0	14	4	22.2222
ARPP21	0	genome.wustl.edu	37	3	35750490	35750490	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	35750490	35750490	C	A	SNP	ARPP21	ENST00000187397	human	ensembl	74_37	+1	known	missense	c.825	p.D275E	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				93	0	0	24	5	17.2414
STAC	0	genome.wustl.edu	37	3	36524582	36524582	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	36524582	36524582	C	A	SNP	STAC	ENST00000273183	human	ensembl	74_37	+1	known	missense	c.487	p.L163M	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_SH3_domain,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_Spectrin_alpha_SH3,prints_SH3_domain	-	no_errors	STAC	HGNC	ENSG00000144681				77	0	0	28	5	15.1515
CSPG5	0	genome.wustl.edu	37	3	47610710	47610710	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	47610710	47610710	G	A	SNP	CSPG5	ENST00000383738	human	ensembl	74_37	-1	known	missense	c.1390	p.R464W	1.000	pfam_Neural_ProG_Cyt	pfam_Chon_Sulph_att,pfam_Neural_ProG_Cyt	-	no_errors	CSPG5	HGNC	ENSG00000114646				56	0	0	6	7	53.8462
IQCF2	0	genome.wustl.edu	37	3	51897243	51897243	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	51897243	51897243	C	T	SNP	IQCF2	ENST00000333127	human	ensembl	74_37	+1	known	nonsense	c.352	p.R118*	0.996	superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF2	HGNC	ENSG00000184345				152	0	0	78	24	23.5294
SNTN	0	genome.wustl.edu	37	3	63638415	63638415	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	63638415	63638415	G	A	SNP	SNTN	ENST00000343837	human	ensembl	74_37	+1	known	missense	c.52	p.D18N	0.005	NULL	NULL	-	no_errors	SNTN	HGNC	ENSG00000188817				65	0	0	15	7	31.8182
BRPF1	0	genome.wustl.edu	37	3	9780998	9780998	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	3	9780998	9780998	C	T	SNP	BRPF1	ENST00000383829	human	ensembl	74_37	+1	known	silent	c.915	p.Y305	0.987	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRPF1	HGNC	ENSG00000156983				107	0	0	36	18	33.3333
FAM193A	0	genome.wustl.edu	37	4	2701991	2701991	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	4	2701991	2701991	G	A	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	silent	c.3219	p.Q1073	0.099	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				84	0	0	34	7	17.0732
UGT2B15	0	genome.wustl.edu	37	4	69519913	69519913	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	4	69519913	69519913	G	A	SNP	UGT2B15	ENST00000338206	human	ensembl	74_37	-1	known	silent	c.1155	p.I385	1.000	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT2B15	HGNC	ENSG00000196620				347	0	0	142	29	16.9591
GRID2	0	genome.wustl.edu	37	4	93225895	93225895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	4	93225895	93225895	G	A	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.88	p.G30R	1.000	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				135	0	0	23	8	25.8065
SLC26A1	0	genome.wustl.edu	37	4	984120	984120	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	4	984120	984120	C	T	SNP	SLC26A1	ENST00000361661	human	ensembl	74_37	-1	known	missense	c.607	p.V203M	0.988	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A1	HGNC	ENSG00000145217				26	0	0	13	3	18.75
FER	0	genome.wustl.edu	37	5	108436218	108436218	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	108436218	108436218	C	G	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	missense	c.2046	p.H682Q	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422				71	0	0	12	8	40
CTNND2	0	genome.wustl.edu	37	5	11022914	11022914	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	11022914	11022914	T	G	SNP	CTNND2	ENST00000304623	human	ensembl	74_37	-1	known	missense	c.2966	p.K989T	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	CTNND2	HGNC	ENSG00000169862				109	0	0	27	14	34.1463
KDM3B	0	genome.wustl.edu	37	5	137727090	137727090	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	137727090	137727090	A	C	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.1769	p.D590A	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				111	0	0	19	18	48.6486
TRIO	0	genome.wustl.edu	37	5	14492826	14492826	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	14492826	14492826	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.7783	p.A2595T	1.000	superfamily_SH3_domain,smart_SH3_domain	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				61	0	0	30	8	21.0526
ANXA6	0	genome.wustl.edu	37	5	150527445	150527445	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	150527445	150527445	C	A	SNP	ANXA6	ENST00000354546	human	ensembl	74_37	-1	known	missense	c.18	p.Q6H	1.000	prints_AnnexinVI	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinVI,prints_AnnexinIV	-	no_errors	ANXA6	HGNC	ENSG00000197043				32	0	0	8	3	27.2727
PDZD2	0	genome.wustl.edu	37	5	31799291	31799291	+	RNA	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	31799291	31799291	G	T	SNP	PDZD2	ENST00000502824	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.135	-	-	-	no_errors	PDZD2	HGNC	ENSG00000133401				10	0	0	14	5	26.3158
ADAMTS12	0	genome.wustl.edu	37	5	33576376	33576376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	33576376	33576376	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.3755	p.G1252E	0.000	NULL	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388				252	0	0	88	22	20
IRX1	0	genome.wustl.edu	37	5	3599879	3599879	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	3599879	3599879	G	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.817	p.D273N	0.897	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				19	0	0	8	3	27.2727
IL6ST	0	genome.wustl.edu	37	5	55238562	55238562	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	5	55238562	55238562	C	T	SNP	IL6ST	ENST00000336909	human	ensembl	74_37	-1	known	nonsense	c.1955	p.W652*	1.000	NULL	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,pfam_IL-6_rcpt_alpha-bd,pfam_Growth/epo_recpt_lig-bind,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL6ST	HGNC	ENSG00000134352				57	0	0	11	4	26.6667
VNN2	0	genome.wustl.edu	37	6	133070863	133070863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	133070863	133070863	C	T	SNP	VNN2	ENST00000326499	human	ensembl	74_37	-1	known	missense	c.1342	p.E448K	0.000	pirsf_Biotinidase_euk	pirsf_Biotinidase_euk,pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	VNN2	HGNC	ENSG00000112303				85	0	0	20	3	13.0435
BCLAF1	0	genome.wustl.edu	37	6	136597228	136597228	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	136597228	136597228	T	G	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.1435	p.K479Q	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363				238	0	0	90	7	7.21649
PHACTR2	0	genome.wustl.edu	37	6	144086875	144086875	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	144086875	144086875	C	T	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	missense	c.1172	p.T391M	0.001	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				185	0	0	69	16	18.8235
MAS1	0	genome.wustl.edu	37	6	160328940	160328940	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	160328940	160328940	C	T	SNP	MAS1	ENST00000252660	human	ensembl	74_37	+1	known	missense	c.953	p.T318M	0.000	prints_Proto-oncogene_Mas	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Proto-oncogene_Mas,prints_GPCR_Rhodpsn	-	no_errors	MAS1	HGNC	ENSG00000130368				127	0	0	33	10	23.2558
PRRC2A	0	genome.wustl.edu	37	6	31600501	31600501	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	31600501	31600501	G	A	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.4051	p.V1351M	0.181	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469				178	0	0	126	20	13.6986
C6orf25	0	genome.wustl.edu	37	6	31692809	31692809	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	31692809	31692809	G	A	SNP	C6orf25	ENST00000375809	human	ensembl	74_37	+1	known	missense	c.703	p.G235R	0.000	NULL	NULL	-	no_errors	C6orf25	HGNC	ENSG00000204420				94	0	0	36	31	46.2687
CPNE5	0	genome.wustl.edu	37	6	36710164	36710164	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	36710164	36710164	C	T	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	missense	c.1663	p.V555M	1.000	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				188	0	0	148	11	6.91824
APOBEC2	0	genome.wustl.edu	37	6	41029224	41029224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	41029224	41029224	G	T	SNP	APOBEC2	ENST00000244669	human	ensembl	74_37	+1	known	missense	c.289	p.A97S	0.215	pfam_APOBEC_N,superfamily_Cytidine_deaminase-like	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC2	HGNC	ENSG00000124701				219	0	0	148	41	21.6931
EYS	0	genome.wustl.edu	37	6	66094316	66094316	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	6	66094316	66094316	T	C	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1262	p.N421S	1.000	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107				76	0	0	28	7	20
PIK3CG	0	genome.wustl.edu	37	7	106509085	106509085	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	106509085	106509085	A	G	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.1079	p.K360R	0.998	superfamily_C2_dom,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				182	0	0	111	22	16.5414
LAMB1	0	genome.wustl.edu	37	7	107626654	107626654	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	107626654	107626654	C	G	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	missense	c.578	p.R193P	1.000	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				143	0	0	71	9	11.25
FOXP2	0	genome.wustl.edu	37	7	114302190	114302190	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	114302190	114302190	G	T	SNP	FOXP2	ENST00000408937	human	ensembl	74_37	+1	known	missense	c.1793	p.W598L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP2	HGNC	ENSG00000128573				109	0	0	36	12	25
THSD7A	0	genome.wustl.edu	37	7	11675950	11675950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	11675950	11675950	G	A	SNP	THSD7A	ENST00000423059	human	ensembl	74_37	-1	known	missense	c.829	p.R277C	0.984	NULL	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108				207	0	0	66	18	21.4286
KCND2	0	genome.wustl.edu	37	7	119915591	119915591	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	119915591	119915591	A	C	SNP	KCND2	ENST00000331113	human	ensembl	74_37	+1	known	missense	c.905	p.K302T	1.000	pfam_Ion_trans_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv	pfam_K_chnl_volt-dep_Kv4_C,pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Shal-type,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv4,prints_K_chnl_volt-dep_Kv4.2,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCND2	HGNC	ENSG00000184408				63	0	0	32	6	15.7895
DGKI	0	genome.wustl.edu	37	7	137080436	137080436	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	137080436	137080436	T	G	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.2989	p.T997P	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				109	0	0	37	7	15.9091
KIAA1549	0	genome.wustl.edu	37	7	138602357	138602357	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	138602357	138602357	A	G	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.2015	p.L672S	0.000	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778				79	0	0	25	8	24.2424
UBN2	0	genome.wustl.edu	37	7	138943256	138943256	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	138943256	138943256	C	T	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	missense	c.686	p.S229F	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741				104	1	0.952381	42	6	12.5
OSBPL3	0	genome.wustl.edu	37	7	24892163	24892163	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	24892163	24892163	G	C	SNP	OSBPL3	ENST00000313367	human	ensembl	74_37	-1	known	missense	c.1118	p.P373R	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL3	HGNC	ENSG00000070882				97	0	0	37	13	26
HOXA3	0	genome.wustl.edu	37	7	27147987	27147987	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	27147987	27147987	C	T	SNP	HOXA3	ENST00000317201	human	ensembl	74_37	-1	known	silent	c.879	p.S293	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA3	HGNC	ENSG00000105997				101	0	0	39	9	18.75
CDK13	0	genome.wustl.edu	37	7	40134196	40134196	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	40134196	40134196	C	G	SNP	CDK13	ENST00000181839	human	ensembl	74_37	+1	known	missense	c.4156	p.H1386D	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK13	HGNC	ENSG00000065883				286	0	0	93	22	19.1304
ZNF12	0	genome.wustl.edu	37	7	6731413	6731413	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	6731413	6731413	C	T	SNP	ZNF12	ENST00000405858	human	ensembl	74_37	-1	known	missense	c.1160	p.G387E	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF12	HGNC	ENSG00000164631				86	0	0	31	7	18.4211
CACNA2D1	0	genome.wustl.edu	37	7	82072713	82072713	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	82072713	82072713	G	A	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	silent	c.63	p.P21	0.998	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				79	0	0	35	8	18.6047
ZNF804B	0	genome.wustl.edu	37	7	88962859	88962859	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	88962859	88962859	G	A	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.563	p.R188Q	0.640	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				160	1	0.621118	82	13	13.6842
RP1L1	0	genome.wustl.edu	37	8	10469206	10469206	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	10469206	10469206	T	C	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.2402	p.Q801R	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638				153	0	0	186	17	8.37438
RIMS2	0	genome.wustl.edu	37	8	104898096	104898096	+	Silent	SNP	T	T	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	104898096	104898096	T	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1269	p.S423	0.998	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				111	0	0	78	16	17.0213
CSMD3	0	genome.wustl.edu	37	8	113569030	113569030	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	113569030	113569030	T	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.4196	p.E1399V	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				129	0	0	54	7	11.4754
PSCA	0	genome.wustl.edu	37	8	143763429	143763429	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	143763429	143763429	T	G	SNP	PSCA	ENST00000301258	human	ensembl	74_37	+1	known	missense	c.224	p.I75S	0.032	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	PSCA	HGNC	ENSG00000167653				45	0	0	28	4	12.5
ZNF517	0	genome.wustl.edu	37	8	146033211	146033211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	146033211	146033211	C	T	SNP	ZNF517	ENST00000359971	human	ensembl	74_37	+1	known	missense	c.910	p.L304F	0.935	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF517	HGNC	ENSG00000197363				72	0	0	63	13	17.1053
MYOM2	0	genome.wustl.edu	37	8	2050519	2050519	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	2050519	2050519	C	T	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.2682	p.G894	0.001	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				81	0	0	27	5	15.625
PHYHIP	0	genome.wustl.edu	37	8	22079330	22079330	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	22079330	22079330	C	T	SNP	PHYHIP	ENST00000454243	human	ensembl	74_37	-1	known	missense	c.529	p.G177S	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490				25	0	0	23	3	11.5385
NEFM	0	genome.wustl.edu	37	8	24772194	24772194	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	24772194	24772194	C	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	silent	c.888	p.Y296	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				90	0	0	56	17	23.2877
NEFM	0	genome.wustl.edu	37	8	24772258	24772258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	24772258	24772258	G	A	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.952	p.A318T	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722				48	0	0	33	5	13.1579
CSMD1	0	genome.wustl.edu	37	8	3087591	3087591	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	3087591	3087591	A	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.4319	p.F1440C	0.986	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				121	0	0	30	9	23.0769
PPAPDC1B	0	genome.wustl.edu	37	8	38122420	38122420	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	38122420	38122420	G	A	SNP	PPAPDC1B	ENST00000527758	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	PPAPDC1B	HGNC	ENSG00000147535				124	0	0	50	11	18.0328
OPRK1	0	genome.wustl.edu	37	8	54142060	54142060	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	54142060	54142060	A	C	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.940	p.F314V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				80	0	0	35	8	18.6047
OPRK1	0	genome.wustl.edu	37	8	54142218	54142218	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	54142218	54142218	C	A	SNP	OPRK1	ENST00000265572	human	ensembl	74_37	-1	known	missense	c.782	p.G261V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,prints_Kappa_opi_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_Somatstn_rcpt,prints_NPY_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OPRK1	HGNC	ENSG00000082556				151	0	0	45	13	22.4138
ATP6V1H	0	genome.wustl.edu	37	8	54669199	54669199	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	54669199	54669199	A	G	SNP	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	missense	c.1193	p.L398S	1.000	pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				53	0	0	13	4	23.5294
PREX2	0	genome.wustl.edu	37	8	68968087	68968087	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	68968087	68968087	A	C	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1116	p.Q372H	1.000	NULL	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				97	0	0	21	10	32.2581
MSC	0	genome.wustl.edu	37	8	72754838	72754838	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	72754838	72754838	G	A	SNP	MSC	ENST00000518440	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	MSC	HGNC	ENSG00000178860				461	0	0	165	38	18.7192
TRPA1	0	genome.wustl.edu	37	8	72946496	72946496	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	72946496	72946496	A	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.2672	p.L891P	0.995	pfam_Ion_trans_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				154	0	0	21	8	27.5862
CPQ	0	genome.wustl.edu	37	8	97797433	97797433	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	8	97797433	97797433	T	G	SNP	CPQ	ENST00000220763	human	ensembl	74_37	+1	known	missense	c.308	p.V103G	0.979	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	CPQ	HGNC	ENSG00000104324				97	0	0	36	11	23.4043
PRPF4	0	genome.wustl.edu	37	9	116053021	116053021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	116053021	116053021	G	A	SNP	PRPF4	ENST00000374198	human	ensembl	74_37	+1	known	missense	c.1190	p.G397E	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PRP4-like,superfamily_WD40_repeat_dom,smart_SFM,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PRPF4	HGNC	ENSG00000136875				152	0	0	52	13	20
AKNA	0	genome.wustl.edu	37	9	117099370	117099370	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	117099370	117099370	G	A	SNP	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	silent	c.4284	p.R1428	1.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				24	0	0	16	5	23.8095
BRINP1	0	genome.wustl.edu	37	9	121971060	121971060	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	121971060	121971060	C	T	SNP	BRINP1	ENST00000265922	human	ensembl	74_37	-1	known	missense	c.1082	p.R361H	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP1	HGNC	ENSG00000078725				104	0	0	48	17	26.1538
TYRP1	0	genome.wustl.edu	37	9	12698586	12698586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	12698586	12698586	G	A	SNP	TYRP1	ENST00000388918	human	ensembl	74_37	+1	known	missense	c.844	p.V282I	0.999	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYRP1	HGNC	ENSG00000107165				91	0	0	29	2	6.45161
GFI1B	0	genome.wustl.edu	37	9	135866288	135866288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	135866288	135866288	G	A	SNP	GFI1B	ENST00000339463	human	ensembl	74_37	+1	known	missense	c.844	p.G282R	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GFI1B	HGNC	ENSG00000165702				96	0	0	46	6	11.5385
COL5A1	0	genome.wustl.edu	37	9	137624003	137624003	+	RNA	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	137624003	137624003	G	A	SNP	COL5A1	ENST00000469093	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	COL5A1	HGNC	ENSG00000130635				97	0	0	40	8	16.6667
COL5A1	0	genome.wustl.edu	37	9	137693842	137693842	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	137693842	137693842	G	C	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	missense	c.2995	p.V999L	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				151	0	0	61	9	12.8571
LCN9	0	genome.wustl.edu	37	9	138556088	138556088	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	138556088	138556088	C	T	SNP	LCN9	ENST00000277526	human	ensembl	74_37	+1	known	silent	c.177	p.F59	0.001	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Odour-bd	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_Maj_urinary,prints_Odour-bd,prints_Blactoglobulin	-	no_errors	LCN9	HGNC	ENSG00000148386				175	0	0	67	13	16.25
CAMSAP1	0	genome.wustl.edu	37	9	138707824	138707824	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	138707824	138707824	T	C	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.4332	p.I1444M	0.000	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559				144	0	0	64	11	14.6667
GLIPR2	0	genome.wustl.edu	37	9	36147845	36147845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	36147845	36147845	G	A	SNP	GLIPR2	ENST00000377960	human	ensembl	74_37	+1	known	missense	c.76	p.V26I	0.776	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	GLIPR2	HGNC	ENSG00000122694				553	1	0.180505	331	55	14.2487
SPATA31A6	0	genome.wustl.edu	37	9	43626961	43626961	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	43626961	43626961	T	C	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1726	p.S576G	0.000	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				145	0	0	79	19	19.3878
DAPK1	0	genome.wustl.edu	37	9	90301573	90301573	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	90301573	90301573	G	T	SNP	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	missense	c.2332	p.V778L	1.000	superfamily_P-loop_NTPase	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				37	0	0	29	9	23.6842
FGD3	0	genome.wustl.edu	37	9	95772662	95772662	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	95772662	95772662	G	A	SNP	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	silent	c.972	p.A324	0.738	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				41	0	0	14	7	33.3333
HABP4	0	genome.wustl.edu	37	9	99227649	99227649	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	9	99227649	99227649	G	A	SNP	HABP4	ENST00000375249	human	ensembl	74_37	+1	known	silent	c.543	p.P181	0.116	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	HABP4	HGNC	ENSG00000130956				252	0	0	78	14	15.2174
TEX13B	0	genome.wustl.edu	37	X	107225140	107225140	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	107225140	107225140	G	A	SNP	TEX13B	ENST00000302917	human	ensembl	74_37	-1	known	missense	c.218	p.A73V	0.132	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925				288	0	0	71	38	34.8624
HTR2C	0	genome.wustl.edu	37	X	114141534	114141534	+	Silent	SNP	A	A	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	114141534	114141534	A	G	SNP	HTR2C	ENST00000276198	human	ensembl	74_37	+1	known	silent	c.933	p.K311	0.983	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2C_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2C	HGNC	ENSG00000147246				341	0	0	87	22	20.1835
MAGEC2	0	genome.wustl.edu	37	X	141290910	141290910	+	Silent	SNP	C	C	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	141290910	141290910	C	T	SNP	MAGEC2	ENST00000247452	human	ensembl	74_37	-1	known	silent	c.864	p.E288	0.004	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEC2	HGNC	ENSG00000046774				256	0	0	58	20	25.641
HEPH	0	genome.wustl.edu	37	X	65393489	65393489	+	Silent	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	65393489	65393489	G	A	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	silent	c.633	p.P211	0.835	pfam_Cu-oxidase_3,superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				64	0	0	18	6	25
AR	0	genome.wustl.edu	37	X	66905930	66905930	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	66905930	66905930	G	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.1847	p.R616H	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				96	0	0	23	9	28.125
MAGEE1	0	genome.wustl.edu	37	X	75650027	75650027	+	Silent	SNP	C	C	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	X	75650027	75650027	C	A	SNP	MAGEE1	ENST00000361470	human	ensembl	74_37	+1	known	silent	c.1704	p.P568	0.325	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE1	HGNC	ENSG00000198934				56	0	0	15	9	37.5
OR10Z1	0	genome.wustl.edu	37	1	158576486	158576487	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	158576486	158576487	-	G	INS	OR10Z1	ENST00000361284	human	ensembl	74_37	+1	known	frame_shift_ins	c.258_259	p.D88fs	0.000:0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10Z1	HGNC	ENSG00000198967				458	1	0.217865	179	33	15.566
ARID1A	0	genome.wustl.edu	37	1	27100330	27100342	+	Frame_Shift_Del	DEL	ACCCCTTCTGGCA	ACCCCTTCTGGCA	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	ACCCCTTCTGGCA	ACCCCTTCTGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	27100330	27100342	ACCCCTTCTGGCA	-	DEL	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	frame_shift_del	c.4042_4054	p.T1348fs	1.000:1.000:1.000:1.000:1.000:0.997:0.999:0.999:0.763:0.787:1.000:1.000:1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				593	0	0	126	24	16
DCDC2B	0	genome.wustl.edu	37	1	32680443	32680443	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	1	32680443	32680443	C	-	DEL	DCDC2B	ENST00000409358	human	ensembl	74_37	+1	known	frame_shift_del	c.760	p.P254fs	0.031	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	DCDC2B	HGNC	ENSG00000222046				163	0	0	46	15	24.5902
PCDH15	0	genome.wustl.edu	37	10	55582575	55582576	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	10	55582575	55582576	CT	-	DEL	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	frame_shift_del	c.4911_4910	p.E1637fs	0.994:0.995	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				224	0	0	64	17	20.9877
MUC6	0	genome.wustl.edu	37	11	1017061	1017061	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	11	1017061	1017061	T	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	frame_shift_del	c.5740	p.T1914fs	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				2055	0	0	806	156	16.2162
DHX37	0	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	12	125465270	125465272	CTC	-	DEL	DHX37	ENST00000308736	human	ensembl	74_37	-1	known	in_frame_del	c.504_502	p.E168in_frame_del	0.904:0.904:0.905	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_T2SS_protein-E,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX37	HGNC	ENSG00000150990				11	0	0	4	2	33.3333
DCLK1	0	genome.wustl.edu	37	13	36428641	36428642	+	Frame_Shift_Ins	INS	-	-	CC			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	13	36428641	36428642	-	CC	INS	DCLK1	ENST00000360631	human	ensembl	74_37	-1	known	frame_shift_ins	c.1030_1029	p.Q343fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Doublecortin_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Doublecortin_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Doublecortin_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK1	HGNC	ENSG00000133083				92	0	0	48	5	9.43396
TRAF3	0	genome.wustl.edu	37	14	103371673	103371673	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	14	103371673	103371673	G	-	DEL	TRAF3	ENST00000392745	human	ensembl	74_37	+1	known	frame_shift_del	c.1259	p.W420fs	1.000	superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323				124	0	0	74	17	18.6813
SMCHD1	0	genome.wustl.edu	37	18	2705785	2705786	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	18	2705785	2705786	-	T	INS	SMCHD1	ENST00000320876	human	ensembl	74_37	+1	known	frame_shift_ins	c.1936_1937	p.G646fs	1.000:1.000	NULL	pfam_SMC_hinge,superfamily_SMC_hinge,superfamily_HATPase_ATP-bd,smart_SMC_hinge	-	no_errors	SMCHD1	HGNC	ENSG00000101596				113	0	0	33	5	13.1579
PTH2	0	genome.wustl.edu	37	19	49926531	49926533	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	49926531	49926533	CAG	-	DEL	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	in_frame_del	c.66_64	p.L22in_frame_del	0.016:0.132:0.132	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538				60	0	0	16	3	15.7895
MUC16	0	genome.wustl.edu	37	19	9064483	9064484	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	19	9064483	9064484	-	A	INS	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_ins	c.22963_22962	p.Q7654fs	0.002:0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				91	0	0	27	6	18.1818
RHBDD1	0	genome.wustl.edu	37	2	227773563	227773563	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	227773563	227773563	C	-	DEL	RHBDD1	ENST00000341329	human	ensembl	74_37	+1	known	frame_shift_del	c.681	p.P228fs	0.000	NULL	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD1	HGNC	ENSG00000144468				312	0	0	71	28	28.2828
NCL	0	genome.wustl.edu	37	2	232326259	232326264	+	In_Frame_Del	DEL	TCATCG	TCATCG	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	TCATCG	TCATCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	2	232326259	232326264	TCATCG	-	DEL	NCL	ENST00000322723	human	ensembl	74_37	-1	known	in_frame_del	c.605_600	p.DD200in_frame_del	0.165:0.163:0.007:0.029:0.028:0.000	NULL	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom	-	no_errors	NCL	HGNC	ENSG00000115053				138	0	0	57	14	19.7183
DMC1	0	genome.wustl.edu	37	22	38935401	38935402	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	22	38935401	38935402	-	A	INS	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	frame_shift_ins	c.511_510	p.R170fs	1.000:1.000	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206				159	0	0	40	8	16.6667
GBAS	0	genome.wustl.edu	37	7	56045959	56045962	+	Splice_Site	DEL	GTGA	GTGA	-			TCGA-BR-A4PE-01A-31D-A25D-08	TCGA-BR-A4PE-10A-01D-A25E-08	GTGA	GTGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	808cb589-dfd9-482e-8234-56895804eefb	b0f561cc-69d4-42a5-b972-7a01202c1d85	7	56045959	56045962	GTGA	-	DEL	GBAS	ENST00000322090	human	ensembl	74_37	+1	known	splice_site_del	c.232+1_232+1	e2+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	GBAS	HGNC	ENSG00000146729				184	0	0	109	18	14.1732
