Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LOC101927345	0	genome.wustl.edu	37	1	143378228	143378228	+	RNA	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	143378228	143378228	A	G	SNP	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261				27	0	0	32	6	15.7895
HIST2H2BF	0	genome.wustl.edu	37	1	149783796	149783796	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	149783796	149783796	T	C	SNP	HIST2H2BF	ENST00000427880	human	ensembl	74_37	-1	known	missense	c.83	p.K28R	1.000	superfamily_Histone-fold,smart_Histone_H2B	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST2H2BF	HGNC	ENSG00000203814				234	0	0	212	45	17.5097
TDRKH	0	genome.wustl.edu	37	1	151748570	151748570	+	Splice_Site	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	151748570	151748570	A	T	SNP	TDRKH	ENST00000368822	human	ensembl	74_37	-1	known	splice_site	c.1217+2	e7+2	1.000	-	-	-	no_errors	TDRKH	HGNC	ENSG00000182134				56	0	0	64	14	17.9487
FLG	0	genome.wustl.edu	37	1	152276817	152276817	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	152276817	152276817	G	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.10545	p.S3515	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				360	0	0	320	71	18.1586
IQGAP3	0	genome.wustl.edu	37	1	156508624	156508624	+	Silent	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	156508624	156508624	A	G	SNP	IQGAP3	ENST00000361170	human	ensembl	74_37	-1	known	silent	c.3258	p.T1086	0.773	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,pfscan_RasGAP	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_RasGAP	-	no_errors	IQGAP3	HGNC	ENSG00000183856				26	0	0	29	7	19.4444
CDK11A	0	genome.wustl.edu	37	1	1650859	1650859	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	1650859	1650859	G	C	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	missense	c.263	p.P88R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				246	0	0	223	16	6.69456
CDK11A	0	genome.wustl.edu	37	1	1650867	1650867	+	Silent	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	1650867	1650867	G	T	SNP	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	silent	c.255	p.I85	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128				243	1	0.409836	230	18	7.25806
HMCN1	0	genome.wustl.edu	37	1	186081953	186081953	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	186081953	186081953	C	T	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	nonsense	c.10999	p.R3667*	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				48	0	0	33	10	23.2558
KCNT2	0	genome.wustl.edu	37	1	196303015	196303015	+	Silent	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	196303015	196303015	A	G	SNP	KCNT2	ENST00000294725	human	ensembl	74_37	-1	known	silent	c.1959	p.D653	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT2	HGNC	ENSG00000162687				29	0	0	17	10	37.037
CFHR5	0	genome.wustl.edu	37	1	196953209	196953209	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	196953209	196953209	G	T	SNP	CFHR5	ENST00000367414	human	ensembl	74_37	+1	known	missense	c.444	p.E148D	0.001	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389				62	0	0	66	22	25
IL19	0	genome.wustl.edu	37	1	207010359	207010359	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	207010359	207010359	G	T	SNP	IL19	ENST00000340758	human	ensembl	74_37	+1	known	missense	c.315	p.Q105H	0.676	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core	pfam_IL-10/19/20/24/26_fam,superfamily_4_helix_cytokine-like_core,prints_IL-19,prints_IL-24	-	no_errors	IL19	HGNC	ENSG00000142224				40	0	0	49	6	10.9091
YOD1	0	genome.wustl.edu	37	1	207222944	207222944	+	Silent	SNP	T	T	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	207222944	207222944	T	G	SNP	YOD1	ENST00000315927	human	ensembl	74_37	-1	known	silent	c.468	p.A156	0.997	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667				48	0	0	44	8	15.3846
LAMB3	0	genome.wustl.edu	37	1	209798993	209798993	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	209798993	209798993	C	A	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.1976	p.R659M	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878				112	0	0	72	28	28
OR2T2	0	genome.wustl.edu	37	1	248616492	248616492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	248616492	248616492	C	T	SNP	OR2T2	ENST00000342927	human	ensembl	74_37	+1	known	missense	c.394	p.R132W	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T2	HGNC	ENSG00000196240				73	0	0	78	10	11.3636
PRDM16	0	genome.wustl.edu	37	1	3319370	3319370	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	3319370	3319370	G	A	SNP	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	missense	c.692	p.R231H	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611				59	0	0	43	9	17.3077
MKI67	0	genome.wustl.edu	37	10	129899811	129899811	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	10	129899811	129899811	C	T	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	missense	c.9416	p.G3139E	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				145	0	0	136	30	18.0723
RBP3	0	genome.wustl.edu	37	10	48387918	48387918	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	10	48387918	48387918	G	T	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.2960	p.A987D	0.875	NULL	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618				117	0	0	141	25	15.0602
C10orf71	0	genome.wustl.edu	37	10	50530848	50530848	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	10	50530848	50530848	G	A	SNP	C10orf71	ENST00000374144	human	ensembl	74_37	+1	known	silent	c.258	p.P86	0.000	NULL	NULL	-	no_errors	C10orf71	HGNC	ENSG00000177354				104	0	0	123	27	18
COL13A1	0	genome.wustl.edu	37	10	71657242	71657242	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	10	71657242	71657242	C	A	SNP	COL13A1	ENST00000356340	human	ensembl	74_37	+1	known	missense	c.669	p.S223R	0.958	NULL	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467				47	0	0	56	9	13.8462
DYNC2H1	0	genome.wustl.edu	37	11	103006490	103006490	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	103006490	103006490	G	A	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.2387	p.R796Q	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240				29	0	0	22	6	21.4286
MUC2	0	genome.wustl.edu	37	11	1093107	1093107	+	Silent	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	1093107	1093107	A	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.4926	p.P1642	0.281	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				19	0	0	24	4	14.2857
CDON	0	genome.wustl.edu	37	11	125891265	125891265	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	125891265	125891265	T	G	SNP	CDON	ENST00000392693	human	ensembl	74_37	-1	known	missense	c.227	p.K76T	0.184	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CDON	HGNC	ENSG00000064309				78	0	0	56	11	16.4179
TRPM5	0	genome.wustl.edu	37	11	2435394	2435394	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	2435394	2435394	A	G	SNP	TRPM5	ENST00000452833	human	ensembl	74_37	-1	known	missense	c.1793	p.F598S	0.912	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985				26	0	0	28	4	12.5
TRIM68	0	genome.wustl.edu	37	11	4622295	4622295	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	4622295	4622295	C	G	SNP	TRIM68	ENST00000300747	human	ensembl	74_37	-1	known	missense	c.869	p.R290P	0.998	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM68	HGNC	ENSG00000167333				129	0	0	123	15	10.8696
OR51D1	0	genome.wustl.edu	37	11	4661620	4661620	+	Silent	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	4661620	4661620	G	T	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	silent	c.600	p.L200	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428				114	0	0	102	17	14.2857
OR51E1	0	genome.wustl.edu	37	11	4673886	4673886	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	4673886	4673886	G	C	SNP	OR51E1	ENST00000396952	human	ensembl	74_37	+1	known	missense	c.130	p.G44R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E1	HGNC	ENSG00000180785				99	0	0	106	34	24.2857
OR52R1	0	genome.wustl.edu	37	11	4824825	4824825	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	4824825	4824825	G	T	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.1023	p.F341L	0.986	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937				171	0	0	234	33	12.3596
OR51G2	0	genome.wustl.edu	37	11	4935980	4935980	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	4935980	4935980	C	T	SNP	OR51G2	ENST00000322013	human	ensembl	74_37	-1	known	missense	c.914	p.R305Q	0.961	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G2	HGNC	ENSG00000176893				47	0	0	40	13	24.5283
OR8J3	0	genome.wustl.edu	37	11	55904869	55904869	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	55904869	55904869	A	G	SNP	OR8J3	ENST00000301529	human	ensembl	74_37	-1	known	missense	c.326	p.V109A	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J3	HGNC	ENSG00000167822				128	0	0	86	27	23.8938
DCHS1	0	genome.wustl.edu	37	11	6650775	6650775	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	6650775	6650775	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.5069	p.S1690C	0.974	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				28	0	0	16	4	20
C11orf80	0	genome.wustl.edu	37	11	66581429	66581429	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	66581429	66581429	G	A	SNP	C11orf80	ENST00000360962	human	ensembl	74_37	+1	known	missense	c.1132	p.D378N	0.999	NULL	NULL	-	no_errors	C11orf80	HGNC	ENSG00000173715				30	0	0	27	7	20.5882
FUT4	0	genome.wustl.edu	37	11	94278513	94278513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	94278513	94278513	C	T	SNP	FUT4	ENST00000358752	human	ensembl	74_37	+1	known	missense	c.1214	p.A405V	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT4	HGNC	ENSG00000196371				37	0	0	19	8	29.6296
PIWIL4	0	genome.wustl.edu	37	11	94340624	94340624	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	11	94340624	94340624	C	A	SNP	PIWIL4	ENST00000299001	human	ensembl	74_37	+1	known	missense	c.1658	p.S553Y	0.952	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL4	HGNC	ENSG00000134627				39	0	0	24	8	25
RAB35	0	genome.wustl.edu	37	12	120535069	120535069	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	120535069	120535069	G	A	SNP	RAB35	ENST00000229340	human	ensembl	74_37	-1	known	nonsense	c.586	p.R196*	1.000	superfamily_P-loop_NTPase,smart_Ran_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB35	HGNC	ENSG00000111737				95	0	0	72	26	26.5306
FAR2	0	genome.wustl.edu	37	12	29474774	29474774	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	29474774	29474774	G	C	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	missense	c.1174	p.E392Q	1.000	pfam_FAR	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				93	0	0	432	66	13.253
LRRK2	0	genome.wustl.edu	37	12	40760826	40760826	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	40760826	40760826	T	G	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.7409	p.M2470R	1.000	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				34	0	0	27	9	25
CNTN1	0	genome.wustl.edu	37	12	41337868	41337868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	41337868	41337868	G	A	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.1579	p.A527T	0.045	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				37	0	0	43	15	25.8621
ANKRD52	0	genome.wustl.edu	37	12	56647085	56647085	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	56647085	56647085	C	T	SNP	ANKRD52	ENST00000267116	human	ensembl	74_37	-1	known	missense	c.1087	p.A363T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD52	HGNC	ENSG00000139645				77	0	0	32	165	83.7563
GLIPR1L1	0	genome.wustl.edu	37	12	75728626	75728626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	12	75728626	75728626	G	A	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	missense	c.118	p.A40T	0.000	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401				87	0	0	62	10	13.8889
TMEM255B	0	genome.wustl.edu	37	13	114514841	114514841	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	13	114514841	114514841	C	T	SNP	TMEM255B	ENST00000375353	human	ensembl	74_37	+1	known	missense	c.946	p.P316S	1.000	NULL	NULL	-	no_errors	TMEM255B	HGNC	ENSG00000184497				156	0	0	141	57	28.7879
FLT3	0	genome.wustl.edu	37	13	28608254	28608254	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	13	28608254	28608254	A	G	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	missense	c.1802	p.L601P	1.000	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025				55	0	0	35	5	12.5
IPO5	0	genome.wustl.edu	37	13	98634835	98634835	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	13	98634835	98634835	G	A	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.223	p.E75K	1.000	superfamily_ARM-type_fold,pfscan_Importin-beta_N	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				37	0	0	43	19	30.6452
EFS	0	genome.wustl.edu	37	14	23828604	23828604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	14	23828604	23828604	C	T	SNP	EFS	ENST00000216733	human	ensembl	74_37	-1	known	missense	c.1083	p.M361I	0.000	NULL	pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	EFS	HGNC	ENSG00000100842				101	0	0	83	27	24.5455
PRPF39	0	genome.wustl.edu	37	14	45578844	45578844	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	14	45578844	45578844	A	T	SNP	PRPF39	ENST00000355765	human	ensembl	74_37	+1	known	missense	c.1037	p.K346I	1.000	NULL	smart_HAT	-	no_errors	PRPF39	HGNC	ENSG00000185246				12	0	0	10	4	28.5714
TRPM1	0	genome.wustl.edu	37	15	31334409	31334409	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	15	31334409	31334409	T	C	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.1883	p.K628R	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160				20	0	0	22	7	24.1379
SEMA6D	0	genome.wustl.edu	37	15	48056166	48056166	+	Silent	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	15	48056166	48056166	T	C	SNP	SEMA6D	ENST00000316364	human	ensembl	74_37	+1	known	silent	c.867	p.D289	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6D	HGNC	ENSG00000137872				86	0	0	88	14	13.7255
SHC4	0	genome.wustl.edu	37	15	49255112	49255112	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	15	49255112	49255112	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.101	p.R34Q	1.000	NULL	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634				164	0	0	96	26	21.3115
C15orf27	0	genome.wustl.edu	37	15	76430152	76430152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	15	76430152	76430152	G	A	SNP	C15orf27	ENST00000388942	human	ensembl	74_37	+1	known	missense	c.143	p.R48Q	1.000	NULL	NULL	-	no_errors	C15orf27	HGNC	ENSG00000169758				112	0	0	65	24	26.9663
NKD1	0	genome.wustl.edu	37	16	50667166	50667166	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	16	50667166	50667166	G	A	SNP	NKD1	ENST00000268459	human	ensembl	74_37	+1	known	missense	c.887	p.R296H	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	NKD1	HGNC	ENSG00000140807				177	0	0	119	37	23.7179
SLC38A8	0	genome.wustl.edu	37	16	84075604	84075604	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	16	84075604	84075604	G	A	SNP	SLC38A8	ENST00000299709	human	ensembl	74_37	-1	known	silent	c.159	p.G53	0.029	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	pfam_AA_transpt_TM,pfam_Tryptophan/tyrosine_permease	-	no_errors	SLC38A8	HGNC	ENSG00000166558				152	0	0	94	36	27.6923
SLC43A2	0	genome.wustl.edu	37	17	1494653	1494653	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	1494653	1494653	T	C	SNP	SLC43A2	ENST00000382147	human	ensembl	74_37	-1	known	missense	c.841	p.S281G	0.005	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC43A2	HGNC	ENSG00000167703				113	0	0	63	25	28.4091
WSB1	0	genome.wustl.edu	37	17	25628925	25628925	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	25628925	25628925	G	C	SNP	WSB1	ENST00000262394	human	ensembl	74_37	+1	known	missense	c.152	p.W51S	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB1	HGNC	ENSG00000109046				165	0	0	105	30	22.2222
ALOX15	0	genome.wustl.edu	37	17	4535309	4535309	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	4535309	4535309	G	A	SNP	ALOX15	ENST00000545513	human	ensembl	74_37	-1	known	missense	c.1750	p.R584W	1.000	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15	HGNC	ENSG00000161905				54	0	0	41	10	19.6078
ZACN	0	genome.wustl.edu	37	17	74075792	74075792	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	74075792	74075792	C	T	SNP	ZACN	ENST00000334586	human	ensembl	74_37	+1	known	nonsense	c.232	p.R78*	0.984	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM	-	no_errors	ZACN	HGNC	ENSG00000186919				64	0	0	33	8	19.5122
AFMID	0	genome.wustl.edu	37	17	76187140	76187140	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	76187140	76187140	A	T	SNP	AFMID	ENST00000327898	human	ensembl	74_37	+1	known	missense	c.153	p.E51D	0.970	NULL	pfam_AB_hydrolase_3	-	no_errors	AFMID	HGNC	ENSG00000183077				37	0	0	32	2	5.88235
CCDC102B	0	genome.wustl.edu	37	18	66504246	66504246	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	18	66504246	66504246	G	A	SNP	CCDC102B	ENST00000319445	human	ensembl	74_37	+1	known	silent	c.246	p.K82	1.000	NULL	NULL	-	no_errors	CCDC102B	HGNC	ENSG00000150636				155	0	0	195	26	11.7647
NETO1	0	genome.wustl.edu	37	18	70417353	70417353	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	18	70417353	70417353	G	A	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	silent	c.1485	p.I495	0.525	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				45	0	0	51	6	10.5263
PGLYRP2	0	genome.wustl.edu	37	19	15582872	15582872	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	15582872	15582872	G	A	SNP	PGLYRP2	ENST00000292609	human	ensembl	74_37	-1	known	missense	c.1172	p.A391V	0.000	superfamily_Amidase_domain,smart_PGRP_domain_met/bac	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031				41	0	0	21	12	36.3636
GNG7	0	genome.wustl.edu	37	19	2515092	2515092	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	2515092	2515092	G	T	SNP	GNG7	ENST00000382159	human	ensembl	74_37	-1	known	missense	c.135	p.N45K	0.983	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG7	HGNC	ENSG00000176533				89	0	0	46	23	33.3333
C19orf47	0	genome.wustl.edu	37	19	40829971	40829971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	40829971	40829971	G	A	SNP	C19orf47	ENST00000582783	human	ensembl	74_37	-1	known	missense	c.716	p.T239M	0.996	NULL	superfamily_SAM/pointed	-	no_errors	C19orf47	HGNC	ENSG00000160392				115	0	0	79	25	24.0385
CYP2A13	0	genome.wustl.edu	37	19	41596049	41596049	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	41596049	41596049	A	T	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.441	p.E147D	0.967	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				70	0	0	36	17	32.0755
DHX34	0	genome.wustl.edu	37	19	47858523	47858523	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	47858523	47858523	G	A	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	silent	c.933	p.S311	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				200	0	0	71	88	55.3459
ZNF584	0	genome.wustl.edu	37	19	58928789	58928789	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	58928789	58928789	G	T	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	nonsense	c.904	p.E302*	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574				72	0	0	60	39	39.3939
ZNF584	0	genome.wustl.edu	37	19	58929002	58929002	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	58929002	58929002	C	A	SNP	ZNF584	ENST00000306910	human	ensembl	74_37	+1	known	missense	c.1117	p.Q373K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF584	HGNC	ENSG00000171574				70	0	0	64	27	29.6703
MUC16	0	genome.wustl.edu	37	19	9090085	9090085	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	19	9090085	9090085	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.1730	p.T577K	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				39	0	0	24	4	14.2857
RPL23AP7	0	genome.wustl.edu	37	2	114369731	114369731	+	RNA	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	114369731	114369731	G	A	SNP	RPL23AP7	ENST00000391616	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL23AP7	HGNC	ENSG00000240356				90	0	0	73	18	19.7802
LRP1B	0	genome.wustl.edu	37	2	141232848	141232848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	141232848	141232848	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.9484	p.G3162R	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				42	0	0	42	12	22.2222
STAM2	0	genome.wustl.edu	37	2	152992030	152992030	+	Silent	SNP	A	A	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	152992030	152992030	A	C	SNP	STAM2	ENST00000263904	human	ensembl	74_37	-1	known	silent	c.792	p.T264	0.992	superfamily_SH3_domain	pfam_VHS,pfam_SH3_domain,pfam_SH3_2,pfam_Ubiquitin-int_motif,superfamily_ENTH_VHS,superfamily_SH3_domain,smart_VHS_subgr,smart_Ubiquitin-int_motif,smart_SH3_domain,pfscan_SH3_domain,pfscan_Ubiquitin-int_motif,pfscan_VHS,prints_SH3_domain,prints_p67phox	-	no_errors	STAM2	HGNC	ENSG00000115145				54	0	0	61	5	7.57576
DPP4	0	genome.wustl.edu	37	2	162891790	162891790	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	162891790	162891790	C	T	SNP	DPP4	ENST00000360534	human	ensembl	74_37	-1	known	missense	c.658	p.G220S	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP4	HGNC	ENSG00000197635				52	0	0	56	19	25.3333
TTN	0	genome.wustl.edu	37	2	179643826	179643826	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	179643826	179643826	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.3983	p.G1328D	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				38	0	0	23	5	17.8571
AOX1	0	genome.wustl.edu	37	2	201531408	201531408	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	201531408	201531408	A	G	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	splice_site	c.3544-2	e32-2	1.000	-	-	-	no_errors	AOX1	HGNC	ENSG00000138356				40	0	0	41	8	16.3265
AOX1	0	genome.wustl.edu	37	2	201531430	201531430	+	Silent	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	201531430	201531430	C	T	SNP	AOX1	ENST00000374700	human	ensembl	74_37	+1	known	silent	c.3564	p.V1188	0.998	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH,tigrfam_Aldehyde_oxidase	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Aldehyde_oxidase	-	no_errors	AOX1	HGNC	ENSG00000138356				48	0	0	50	9	15.2542
IHH	0	genome.wustl.edu	37	2	219925067	219925067	+	Silent	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	219925067	219925067	T	C	SNP	IHH	ENST00000295731	human	ensembl	74_37	-1	known	silent	c.123	p.P41	1.000	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom	pirsf_Hedgehog,pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,prints_Hedgehog,pfscan_Intein_splice_site	-	no_errors	IHH	HGNC	ENSG00000163501				97	0	0	57	16	21.9178
DYSF	0	genome.wustl.edu	37	2	71743364	71743364	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	71743364	71743364	T	A	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.940	p.F314I	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				40	0	0	39	9	18.75
LOC654342	0	genome.wustl.edu	37	2	91816867	91816867	+	RNA	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	91816867	91816867	G	A	SNP	LOC654342	ENST00000608501	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	AC027612.6	Clone_based_vega_gene	ENSG00000143429				14	0	0	9	6	40
FAM182B	0	genome.wustl.edu	37	20	25848606	25848606	+	RNA	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	25848606	25848606	G	A	SNP	FAM182B	ENST00000424021	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028	-	-	-	no_errors	FAM182B	HGNC	ENSG00000175170				25	0	0	21	4	16
KIF3B	0	genome.wustl.edu	37	20	30897661	30897661	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	30897661	30897661	G	A	SNP	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	silent	c.81	p.S27	0.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350				78	0	0	86	18	17.3077
SLC23A2	0	genome.wustl.edu	37	20	4843508	4843508	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	4843508	4843508	C	T	SNP	SLC23A2	ENST00000338244	human	ensembl	74_37	-1	known	missense	c.1402	p.A468T	0.116	pfam_Xant/urac/vitC	pfam_Xant/urac/vitC	-	no_errors	SLC23A2	HGNC	ENSG00000089057				68	0	0	47	35	42.6829
CASS4	0	genome.wustl.edu	37	20	55033575	55033575	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	55033575	55033575	G	A	SNP	CASS4	ENST00000360314	human	ensembl	74_37	+1	known	missense	c.2133	p.M711I	0.816	pfam_CAS_DUF3513	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589				102	0	0	103	13	11.2069
ADRM1	0	genome.wustl.edu	37	20	60883767	60883767	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	60883767	60883767	G	A	SNP	ADRM1	ENST00000253003	human	ensembl	74_37	+1	known	missense	c.1174	p.G392S	1.000	NULL	pfam_26S_Psome_Ubiquitin-recp_Rpn13	-	no_errors	ADRM1	HGNC	ENSG00000130706				44	0	0	44	21	32.3077
LAMA5	0	genome.wustl.edu	37	20	60909261	60909261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	20	60909261	60909261	G	A	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.2720	p.A907V	0.997	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				35	0	0	36	23	38.9831
BAGE2	0	genome.wustl.edu	37	21	11038890	11038890	+	RNA	SNP	A	A	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	21	11038890	11038890	A	T	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				347	0	0	262	19	6.76157
GOLIM4	0	genome.wustl.edu	37	3	167750460	167750460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	3	167750460	167750460	C	T	SNP	GOLIM4	ENST00000470487	human	ensembl	74_37	-1	known	missense	c.1024	p.A342T	1.000	NULL	NULL	-	no_errors	GOLIM4	HGNC	ENSG00000173905				114	0	0	58	25	30.1205
PIK3CA	0	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				29	0	0	35	5	12.5
VPS8	0	genome.wustl.edu	37	3	184542473	184542473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	3	184542473	184542473	C	T	SNP	VPS8	ENST00000287546	human	ensembl	74_37	+1	known	missense	c.53	p.T18M	0.003	NULL	superfamily_Quinonprotein_ADH-like_supfam,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931				47	0	0	29	3	9.375
HESX1	0	genome.wustl.edu	37	3	57232304	57232304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	3	57232304	57232304	C	T	SNP	HESX1	ENST00000295934	human	ensembl	74_37	-1	known	missense	c.479	p.R160H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HESX1	HGNC	ENSG00000163666				43	0	0	32	9	21.9512
KIAA1109	0	genome.wustl.edu	37	4	123176382	123176382	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	123176382	123176382	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.6322	p.I2108V	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688				81	0	0	52	18	25.7143
ADAD1	0	genome.wustl.edu	37	4	123336720	123336720	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	123336720	123336720	G	T	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.1436	p.G479V	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				114	0	0	77	16	17.2043
SPATA5	0	genome.wustl.edu	37	4	123868603	123868603	+	Silent	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	123868603	123868603	A	G	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	silent	c.1674	p.G558	0.631	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375				99	0	0	57	23	28.75
RFC1	0	genome.wustl.edu	37	4	39318611	39318611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	39318611	39318611	C	T	SNP	RFC1	ENST00000381897	human	ensembl	74_37	-1	known	missense	c.1127	p.R376H	1.000	superfamily_P-loop_NTPase,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_P-loop_NTPase,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928				36	0	0	33	6	15.3846
EXOC1	0	genome.wustl.edu	37	4	56768601	56768601	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	56768601	56768601	G	A	SNP	EXOC1	ENST00000346134	human	ensembl	74_37	+1	known	missense	c.2429	p.R810H	1.000	pfam_Exocyst_Exoc1/SEC3	pfam_Exocyst_Exoc1/SEC3	-	no_errors	EXOC1	HGNC	ENSG00000090989				53	0	0	49	20	28.9855
GRSF1	0	genome.wustl.edu	37	4	71691921	71691921	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	71691921	71691921	C	A	SNP	GRSF1	ENST00000254799	human	ensembl	74_37	-1	known	missense	c.1177	p.D393Y	0.974	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	GRSF1	HGNC	ENSG00000132463				17	0	0	30	2	6.25
GRID2	0	genome.wustl.edu	37	4	94316852	94316852	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	94316852	94316852	C	G	SNP	GRID2	ENST00000282020	human	ensembl	74_37	+1	known	missense	c.1340	p.T447S	1.000	superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt	pfam_Iontro_glu_rcpt,pfam_ANF_lig-bd_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID2	HGNC	ENSG00000152208				73	0	0	50	19	27.5362
STPG2	0	genome.wustl.edu	37	4	99049733	99049733	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	4	99049733	99049733	C	A	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	missense	c.233	p.R78I	0.155	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116				16	0	0	12	3	20
PCDHB10	0	genome.wustl.edu	37	5	140572528	140572528	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	5	140572528	140572528	G	A	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	missense	c.403	p.D135N	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				114	0	0	91	19	17.2727
FAT2	0	genome.wustl.edu	37	5	150945845	150945845	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	5	150945845	150945845	C	T	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.2648	p.R883H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				80	0	0	44	21	32.3077
ZNF879	0	genome.wustl.edu	37	5	178454513	178454513	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	5	178454513	178454513	C	A	SNP	ZNF879	ENST00000444149	human	ensembl	74_37	+1	known	missense	c.73	p.Q25K	0.998	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF879	HGNC	ENSG00000234284				46	0	0	22	8	26.6667
ADCY2	0	genome.wustl.edu	37	5	7802364	7802364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	5	7802364	7802364	G	A	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.2662	p.V888I	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295				27	0	0	21	16	43.2432
VCAN	0	genome.wustl.edu	37	5	82808156	82808156	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	5	82808156	82808156	T	A	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.983	p.F328Y	1.000	pfam_Link,superfamily_C-type_lectin_fold,smart_Link,pfscan_Link	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				32	0	0	26	5	16.129
TRAF3IP2	0	genome.wustl.edu	37	6	111913074	111913074	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	111913074	111913074	G	C	SNP	TRAF3IP2	ENST00000340026	human	ensembl	74_37	-1	known	missense	c.243	p.H81Q	0.001	NULL	pfam_SEFIR	-	no_errors	TRAF3IP2	HGNC	ENSG00000056972				93	0	0	77	8	9.41176
SOGA3	0	genome.wustl.edu	37	6	127797234	127797234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	127797234	127797234	C	T	SNP	SOGA3	ENST00000368268	human	ensembl	74_37	-1	known	missense	c.1937	p.R646Q	1.000	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA3	HGNC	ENSG00000214338				107	0	0	70	14	16.6667
PHACTR2	0	genome.wustl.edu	37	6	144104379	144104379	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	144104379	144104379	G	T	SNP	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	nonsense	c.1669	p.E557*	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419				22	0	0	17	3	15
SYNE1	0	genome.wustl.edu	37	6	152647757	152647757	+	Silent	SNP	A	A	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	152647757	152647757	A	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.14967	p.T4989	0.753	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				24	0	0	10	7	41.1765
HLA-V	0	genome.wustl.edu	37	6	29761745	29761745	+	RNA	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	29761745	29761745	G	A	SNP	HLA-V	ENST00000457107	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HLA-V	HGNC	ENSG00000181126				17	0	0	7	3	30
SNORD117	0	genome.wustl.edu	37	6	31504170	31504170	+	RNA	SNP	T	T	C			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	31504170	31504170	T	C	SNP	SNORD117	ENST00000364915	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SNORD117	HGNC	ENSG00000201785				65	0	0	30	14	31.8182
TNXB	0	genome.wustl.edu	37	6	32035600	32035600	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	32035600	32035600	G	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6382	p.Q2128K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				117	1	0.847458	57	30	34.4828
ECI2	0	genome.wustl.edu	37	6	4119493	4119493	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	6	4119493	4119493	G	A	SNP	ECI2	ENST00000380118	human	ensembl	74_37	-1	known	missense	c.812	p.P271L	1.000	pfam_Crotonase_core_superfam	pfam_Acyl-CoA-binding_protein,pfam_Crotonase_core_superfam,superfamily_Acyl-CoA-binding_protein,prints_Acyl-CoA-binding_protein	-	no_errors	ECI2	HGNC	ENSG00000198721				50	0	0	35	16	31.3725
C7orf61	0	genome.wustl.edu	37	7	100061261	100061261	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	100061261	100061261	C	G	SNP	C7orf61	ENST00000332375	human	ensembl	74_37	-1	known	missense	c.112	p.D38H	0.003	NULL	NULL	-	no_errors	C7orf61	HGNC	ENSG00000185955				57	0	0	110	11	9.09091
FBXO24	0	genome.wustl.edu	37	7	100190614	100190614	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	100190614	100190614	C	A	SNP	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	missense	c.881	p.T294N	0.992	NULL	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				45	0	0	93	8	7.92079
ZNF282	0	genome.wustl.edu	37	7	148895532	148895532	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	148895532	148895532	G	A	SNP	ZNF282	ENST00000262085	human	ensembl	74_37	+1	known	silent	c.273	p.L91	1.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF282	HGNC	ENSG00000170265				96	0	0	42	20	32.2581
DNAJB6	0	genome.wustl.edu	37	7	157155939	157155939	+	Silent	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	157155939	157155939	G	A	SNP	DNAJB6	ENST00000262177	human	ensembl	74_37	+1	known	silent	c.150	p.A50	0.197	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB6	HGNC	ENSG00000105993				32	0	0	20	4	16.6667
FAM188B	0	genome.wustl.edu	37	7	30922556	30922556	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	30922556	30922556	G	A	SNP	FAM188B	ENST00000265299	human	ensembl	74_37	+1	known	missense	c.2173	p.E725K	0.234	NULL	NULL	-	no_errors	FAM188B	HGNC	ENSG00000106125				291	0	0	237	48	16.8421
NUDCD3	0	genome.wustl.edu	37	7	44431997	44431997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	44431997	44431997	G	A	SNP	NUDCD3	ENST00000355451	human	ensembl	74_37	-1	known	missense	c.874	p.R292C	1.000	superfamily_HSP20-like_chaperone	pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom	-	no_errors	NUDCD3	HGNC	ENSG00000015676				142	0	0	129	35	21.3415
POM121L12	0	genome.wustl.edu	37	7	53103920	53103920	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	53103920	53103920	C	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.556	p.P186T	0.000	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900				93	0	0	70	21	23.0769
GRM3	0	genome.wustl.edu	37	7	86416261	86416261	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	86416261	86416261	G	A	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.1153	p.E385K	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				115	0	0	94	28	22.9508
ZFAT	0	genome.wustl.edu	37	8	135613822	135613822	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	8	135613822	135613822	C	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.2140	p.A714T	0.987	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				108	0	0	98	16	14.0351
PLEC	0	genome.wustl.edu	37	8	144998131	144998131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	8	144998131	144998131	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.6377	p.R2126H	0.877	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				33	0	0	9	14	60.8696
PXDNL	0	genome.wustl.edu	37	8	52321614	52321614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	8	52321614	52321614	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2570	p.A857V	0.064	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				57	0	0	35	11	23.913
SLC10A5	0	genome.wustl.edu	37	8	82606874	82606874	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	8	82606874	82606874	C	G	SNP	SLC10A5	ENST00000518568	human	ensembl	74_37	-1	known	missense	c.334	p.E112Q	0.032	NULL	pfam_BilAc/Na_symport	-	no_errors	SLC10A5	HGNC	ENSG00000253598				66	0	0	81	11	11.9565
MUSK	0	genome.wustl.edu	37	9	113496549	113496549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	113496549	113496549	G	A	SNP	MUSK	ENST00000374448	human	ensembl	74_37	+1	known	missense	c.647	p.R216Q	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Frizzled_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MUSK	HGNC	ENSG00000030304				37	0	0	32	11	25.5814
CNTLN	0	genome.wustl.edu	37	9	17416105	17416105	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	17416105	17416105	A	G	SNP	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	missense	c.3032	p.E1011G	1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459				65	0	0	51	17	25
SMARCA2	0	genome.wustl.edu	37	9	2054682	2054682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	2054682	2054682	G	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.1132	p.V378L	0.998	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				88	0	0	56	15	21.1268
PRSS3	0	genome.wustl.edu	37	9	33798632	33798632	+	RNA	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	33798632	33798632	C	T	SNP	PRSS3	ENST00000495682	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	PRSS3	HGNC	ENSG00000010438				154	0	0	128	26	16.8831
ANKRD20A4	0	genome.wustl.edu	37	9	69390020	69390020	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	69390020	69390020	T	A	SNP	ANKRD20A4	ENST00000357336	human	ensembl	74_37	+1	known	missense	c.574	p.S192T	0.002	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A4	HGNC	ENSG00000172014				10	0	0	2	4	66.6667
TEX13B	0	genome.wustl.edu	37	X	107224569	107224569	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	X	107224569	107224569	G	A	SNP	TEX13B	ENST00000302917	human	ensembl	74_37	-1	known	missense	c.680	p.A227V	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925				140	0	0	159	54	25.3521
CNKSR2	0	genome.wustl.edu	37	X	21667117	21667117	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	X	21667117	21667117	G	A	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.2861	p.R954Q	1.000	NULL	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				35	0	0	71	21	22.8261
FAM9B	0	genome.wustl.edu	37	X	8998322	8998322	+	Silent	SNP	C	C	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	X	8998322	8998322	C	T	SNP	FAM9B	ENST00000327220	human	ensembl	74_37	-1	known	silent	c.261	p.L87	0.035	pfam_Cor1/Xlr/Xmr	pfam_Cor1/Xlr/Xmr	-	no_errors	FAM9B	HGNC	ENSG00000177138				13	0	0	4	3	42.8571
PCDH11X	0	genome.wustl.edu	37	X	91090690	91090690	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	X	91090690	91090690	T	G	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.187	p.F63V	1.000	pfam_Cadherin_N,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				57	0	0	43	45	51.1364
MIA3	0	genome.wustl.edu	37	1	222802954	222802955	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	1	222802954	222802955	GG	-	DEL	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	frame_shift_del	c.2392_2393	p.V799fs	0.035:0.027	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				53	0	0	60	12	16.6667
TM9SF2	0	genome.wustl.edu	37	13	100192901	100192902	+	RNA	INS	-	-	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	13	100192901	100192902	-	T	INS	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.173:0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304				19	0	0	24	9	27.2727
COQ9	0	genome.wustl.edu	37	16	57481420	57481422	+	In_Frame_Del	DEL	GGC	GGC	-			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	16	57481420	57481422	GGC	-	DEL	COQ9	ENST00000262507	human	ensembl	74_37	+1	known	in_frame_del	c.3_5	p.A5in_frame_del	1.000:1.000:1.000	NULL	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682				13	0	0	4	2	33.3333
TP53	0	genome.wustl.edu	37	17	7579442	7579442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	17	7579442	7579442	G	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.245	p.P82fs	0.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				178	0	0	79	80	50.3145
SCN7A	0	genome.wustl.edu	37	2	167322420	167322421	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	2	167322420	167322421	-	A	INS	SCN7A	ENST00000409855	human	ensembl	74_37	-1	known	frame_shift_ins	c.742_741	p.L247fs	1.000:1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546				35	0	0	21	10	32.2581
RBM6	0	genome.wustl.edu	37	3	50004793	50004794	+	RNA	INS	-	-	A			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	3	50004793	50004794	-	A	INS	RBM6	ENST00000488807	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RBM6	HGNC	ENSG00000004534				22	0	0	15	3	16.6667
PCLO	0	genome.wustl.edu	37	7	82595405	82595406	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	7	82595405	82595406	-	T	INS	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	frame_shift_ins	c.3699_3698	p.P1234fs	0.009:0.006	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472				233	0	0	233	36	13.3829
RNF122	0	genome.wustl.edu	37	8	33416169	33416182	+	Frame_Shift_Del	DEL	AAGACAAAGATGCC	AAGACAAAGATGCC	-			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	AAGACAAAGATGCC	AAGACAAAGATGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	8	33416169	33416182	AAGACAAAGATGCC	-	DEL	RNF122	ENST00000256257	human	ensembl	74_37	-1	known	frame_shift_del	c.146_133	p.G45fs	1.000:1.000:1.000:1.000:1.000:0.968:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF122	HGNC	ENSG00000133874				71	0	0	38	14	26.9231
LOC100996870	0	genome.wustl.edu	37	9	66466800	66466800	+	RNA	DEL	G	G	-			TCGA-BR-A4PF-01A-11D-A25D-08	TCGA-BR-A4PF-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	25c76e84-85ce-4f2a-b6af-cd7c54621eac	76a41921-d5cb-4385-9294-760aeeae29c2	9	66466800	66466800	G	-	DEL	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.134	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				16	0	0	15	3	16.6667
