Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
STXBP3	0	genome.wustl.edu	37	1	109336246	109336246	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	109336246	109336246	C	T	SNP	STXBP3	ENST00000370008	human	ensembl	74_37	+1	known	missense	c.1006	p.H336Y	0.997	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266				90	0	0	46	11	19.2982
MAGI3	0	genome.wustl.edu	37	1	114196495	114196495	+	Silent	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	114196495	114196495	A	G	SNP	MAGI3	ENST00000369611	human	ensembl	74_37	+1	known	silent	c.2484	p.T828	0.232	superfamily_PDZ	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				299	1	0.333333	188	30	13.7615
VPS13D	0	genome.wustl.edu	37	1	12317070	12317070	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	12317070	12317070	C	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.867	p.F289L	0.999	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				144	1	0.689655	96	24	20
HRNR	0	genome.wustl.edu	37	1	152192292	152192292	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	152192292	152192292	C	G	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.1813	p.G605R	0.018	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				467	0	0	245	138	36.0313
CD1C	0	genome.wustl.edu	37	1	158261017	158261017	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	158261017	158261017	A	T	SNP	CD1C	ENST00000368170	human	ensembl	74_37	+1	known	missense	c.155	p.E52V	0.001	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD1C	HGNC	ENSG00000158481				99	0	0	42	21	33.3333
OR10K2	0	genome.wustl.edu	37	1	158390365	158390365	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	158390365	158390365	C	A	SNP	OR10K2	ENST00000314902	human	ensembl	74_37	-1	known	missense	c.292	p.A98S	0.993	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10K2	HGNC	ENSG00000180708				179	1	0.555556	83	63	43.1507
OR6N1	0	genome.wustl.edu	37	1	158736147	158736147	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	158736147	158736147	G	A	SNP	OR6N1	ENST00000335094	human	ensembl	74_37	-1	known	missense	c.326	p.A109V	0.272	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6N1	HGNC	ENSG00000197403				50	0	0	41	14	25.4545
PVRL4	0	genome.wustl.edu	37	1	161049643	161049643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	161049643	161049643	C	T	SNP	PVRL4	ENST00000368012	human	ensembl	74_37	-1	known	missense	c.176	p.G59D	0.003	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PVRL4	HGNC	ENSG00000143217				108	0	0	51	32	38.5542
LRRC52	0	genome.wustl.edu	37	1	165514100	165514100	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	165514100	165514100	C	T	SNP	LRRC52	ENST00000294818	human	ensembl	74_37	+1	known	silent	c.567	p.N189	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC52	HGNC	ENSG00000162763				175	0	0	127	28	18.0645
CROCCP2	0	genome.wustl.edu	37	1	16946434	16946434	+	RNA	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	16946434	16946434	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				19	0	0	18	4	18.1818
SCYL3	0	genome.wustl.edu	37	1	169823652	169823652	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	169823652	169823652	T	G	SNP	SCYL3	ENST00000367770	human	ensembl	74_37	-1	known	missense	c.1928	p.Q643P	0.923	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom	-	no_errors	SCYL3	HGNC	ENSG00000000457				135	0	0	79	24	23.301
PAPPA2	0	genome.wustl.edu	37	1	176740108	176740108	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	176740108	176740108	A	G	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.4507	p.S1503G	0.998	superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183				73	0	0	37	36	49.3151
SHCBP1L	0	genome.wustl.edu	37	1	182908441	182908441	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	182908441	182908441	C	T	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.946	p.E316K	0.986	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				83	0	0	69	8	10.3896
BRINP3	0	genome.wustl.edu	37	1	190195400	190195400	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	190195400	190195400	G	T	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.773	p.A258E	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				72	0	0	40	9	18.3673
UBR4	0	genome.wustl.edu	37	1	19465681	19465681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	19465681	19465681	G	A	SNP	UBR4	ENST00000375267	human	ensembl	74_37	-1	known	missense	c.8627	p.A2876V	1.000	superfamily_ARM-type_fold	superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR4	HGNC	ENSG00000127481				125	0	0	107	29	21.3235
WNT4	0	genome.wustl.edu	37	1	22446680	22446680	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	22446680	22446680	C	G	SNP	WNT4	ENST00000290167	human	ensembl	74_37	-1	known	missense	c.919	p.E307Q	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt4	-	no_errors	WNT4	HGNC	ENSG00000162552				34	0	0	19	8	29.6296
AHDC1	0	genome.wustl.edu	37	1	27876849	27876849	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	27876849	27876849	T	C	SNP	AHDC1	ENST00000247087	human	ensembl	74_37	-1	known	missense	c.1778	p.K593R	1.000	NULL	NULL	-	no_errors	AHDC1	HGNC	ENSG00000126705				203	0	0	101	20	16.5289
STK40	0	genome.wustl.edu	37	1	36826900	36826900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	36826900	36826900	C	T	SNP	STK40	ENST00000373130	human	ensembl	74_37	-1	known	missense	c.34	p.E12K	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK40	HGNC	ENSG00000196182				157	1	0.632911	86	28	24.5614
AJAP1	0	genome.wustl.edu	37	1	4832493	4832493	+	Silent	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	4832493	4832493	T	C	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	silent	c.1071	p.S357	0.007	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				59	0	0	27	9	25
TNFRSF9	0	genome.wustl.edu	37	1	7993258	7993258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	7993258	7993258	G	A	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.643	p.R215W	0.000	prints_TNFR_9	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249				68	0	0	23	8	25.8065
SLC44A3	0	genome.wustl.edu	37	1	95330312	95330312	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	95330312	95330312	C	G	SNP	SLC44A3	ENST00000271227	human	ensembl	74_37	+1	known	missense	c.1252	p.P418A	0.997	pfam_Choline_transptr-like	pfam_Choline_transptr-like	-	no_errors	SLC44A3	HGNC	ENSG00000143036				173	0	0	103	27	20.7692
MRPL43	0	genome.wustl.edu	37	10	102747079	102747079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	102747079	102747079	C	T	SNP	MRPL43	ENST00000370242	human	ensembl	74_37	-1	known	missense	c.122	p.R41H	1.000	superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	pfam_Ribosome/NADH_DH,superfamily_Thioredoxin-like_fold,smart_Ribosome/NADH_DH	-	no_errors	MRPL43	HGNC	ENSG00000055950				60	0	0	26	6	18.75
PNLIPRP1	0	genome.wustl.edu	37	10	118363625	118363625	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	118363625	118363625	A	T	SNP	PNLIPRP1	ENST00000358834	human	ensembl	74_37	+1	known	missense	c.1147	p.N383Y	0.996	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom	pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pirsf_Lipoprotein_lipase_LIPH,pfscan_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase	-	no_errors	PNLIPRP1	HGNC	ENSG00000187021				57	0	0	41	10	19.6078
CUBN	0	genome.wustl.edu	37	10	16911742	16911742	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	16911742	16911742	T	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.9347	p.K3116M	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				161	0	0	164	23	12.2995
APBB1IP	0	genome.wustl.edu	37	10	26830559	26830559	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	26830559	26830559	T	C	SNP	APBB1IP	ENST00000376236	human	ensembl	74_37	+1	known	missense	c.1093	p.Y365H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ras-assoc,pfam_Pleckstrin_homology,smart_Ras-assoc,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Ras-assoc	-	no_errors	APBB1IP	HGNC	ENSG00000077420				48	0	0	39	11	22
MYPN	0	genome.wustl.edu	37	10	69881710	69881710	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	69881710	69881710	G	C	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.515	p.R172T	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347				73	0	0	71	6	7.79221
ZSWIM8	0	genome.wustl.edu	37	10	75548519	75548519	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	75548519	75548519	G	A	SNP	ZSWIM8	ENST00000398706	human	ensembl	74_37	+1	known	silent	c.300	p.V100	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM8	HGNC	ENSG00000214655				42	0	0	40	5	11.1111
EIF5AL1	0	genome.wustl.edu	37	10	81272670	81272670	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	81272670	81272670	T	C	SNP	EIF5AL1	ENST00000520547	human	ensembl	74_37	+1	known	missense	c.265	p.F89L	1.000	pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	pfam_Transl_elong_IF5A_C,superfamily_Translation_prot_SH3-like,superfamily_NA-bd_OB-fold,pirsf_Transl_elong_IF5A,tigrfam_Transl_elong_IF5A	-	no_errors	EIF5AL1	HGNC	ENSG00000253626				75	0	0	45	7	13.4615
LRIT1	0	genome.wustl.edu	37	10	85994113	85994113	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	85994113	85994113	G	T	SNP	LRIT1	ENST00000372105	human	ensembl	74_37	-1	known	missense	c.611	p.A204E	0.877	smart_Cys-rich_flank_reg_C	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRIT1	HGNC	ENSG00000148602				154	0	0	61	10	14.0845
TNKS2	0	genome.wustl.edu	37	10	93582083	93582083	+	Silent	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	93582083	93582083	T	G	SNP	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	silent	c.759	p.S253	0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854				154	0	0	93	31	25
ZNF518A	0	genome.wustl.edu	37	10	97918525	97918525	+	RNA	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	10	97918525	97918525	T	A	SNP	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				50	0	0	41	11	21.1538
HTR3B	0	genome.wustl.edu	37	11	113780172	113780172	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	11	113780172	113780172	G	A	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.208	p.D70N	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305				43	0	0	20	16	44.4444
OR8H1	0	genome.wustl.edu	37	11	56057747	56057747	+	Silent	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	11	56057747	56057747	A	G	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	silent	c.792	p.S264	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				106	0	0	33	36	52.1739
MALAT1	0	genome.wustl.edu	37	11	65266460	65266460	+	RNA	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	11	65266460	65266460	T	G	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				145	0	0	109	31	22.1429
RPLP2	0	genome.wustl.edu	37	11	812594	812594	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	11	812594	812594	G	T	SNP	RPLP2	ENST00000321153	human	ensembl	74_37	+1	known	missense	c.232	p.G78C	0.738	pfam_Ribosomal_L10/L12	pfam_Ribosomal_L10/L12	-	no_errors	RPLP2	HGNC	ENSG00000177600				65	0	0	38	6	13.6364
DRAM1	0	genome.wustl.edu	37	12	102295137	102295137	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	102295137	102295137	C	T	SNP	DRAM1	ENST00000258534	human	ensembl	74_37	+1	known	missense	c.268	p.P90S	0.745	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	DRAM1	HGNC	ENSG00000136048				89	0	0	37	15	28.8462
TAS2R43	0	genome.wustl.edu	37	12	11244166	11244166	+	Silent	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	11244166	11244166	G	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	silent	c.663	p.T221	0.185	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				33	0	0	49	6	10.9091
TAS2R43	0	genome.wustl.edu	37	12	11244194	11244194	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	11244194	11244194	T	C	SNP	TAS2R43	ENST00000531678	human	ensembl	74_37	-1	known	missense	c.635	p.H212R	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R43	HGNC	ENSG00000255374				13	0	0	30	4	11.7647
PXN	0	genome.wustl.edu	37	12	120660701	120660701	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	120660701	120660701	T	A	SNP	PXN	ENST00000267257	human	ensembl	74_37	-1	known	missense	c.458	p.N153I	1.000	prints_Paxillin	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM,prints_Paxillin	-	no_errors	PXN	HGNC	ENSG00000089159				38	0	0	47	20	29.8507
BCL2L14	0	genome.wustl.edu	37	12	12247709	12247709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	12247709	12247709	G	A	SNP	BCL2L14	ENST00000308721	human	ensembl	74_37	+1	known	missense	c.790	p.E264K	0.978	NULL	pfscan_Bcl2-like	-	no_errors	BCL2L14	HGNC	ENSG00000121380				179	0	0	91	20	18.018
GYS2	0	genome.wustl.edu	37	12	21689968	21689968	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	21689968	21689968	G	A	SNP	GYS2	ENST00000261195	human	ensembl	74_37	-1	known	missense	c.2032	p.R678W	0.993	NULL	pfam_Glycogen_synth,pfam_Glyco_trans_1	-	no_errors	GYS2	HGNC	ENSG00000111713				109	0	0	72	15	17.2414
RACGAP1	0	genome.wustl.edu	37	12	50384086	50384086	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	50384086	50384086	G	T	SNP	RACGAP1	ENST00000312377	human	ensembl	74_37	-1	known	missense	c.1864	p.Q622K	1.000	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,superfamily_Regulat_G_prot_signal_superfam,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	RACGAP1	HGNC	ENSG00000161800				102	0	0	46	13	22.0339
IKZF4	0	genome.wustl.edu	37	12	56428613	56428613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	56428613	56428613	G	A	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	missense	c.1256	p.R419Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				31	0	0	42	5	10.6383
FAM19A2	0	genome.wustl.edu	37	12	62104163	62104163	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	62104163	62104163	G	C	SNP	FAM19A2	ENST00000551449	human	ensembl	74_37	-1	putative	missense	c.142	p.Q48E	0.997	NULL	NULL	-	no_errors	FAM19A2	HGNC	ENSG00000198673				167	0	0	101	26	20.4724
CARS2	0	genome.wustl.edu	37	13	111329399	111329399	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	13	111329399	111329399	T	A	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.707	p.K236I	0.993	pfam_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				78	0	0	30	36	54.5455
ENSG00000121388	0	genome.wustl.edu	37	13	19761310	19761310	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	13	19761310	19761310	A	C	SNP	ENSG00000121388	ENST00000382988	human	ensembl	74_37	+1	putative	missense	c.84	p.K28N	1.000	NULL	NULL	-	no_errors	RP11-408E5.4	Clone_based_vega_gene	ENSG00000121388				28	0	0	21	13	38.2353
MTUS2	0	genome.wustl.edu	37	13	29933476	29933476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	13	29933476	29933476	C	T	SNP	MTUS2	ENST00000431530	human	ensembl	74_37	+1	known	missense	c.3013	p.R1005W	0.994	NULL	NULL	-	no_errors	MTUS2	HGNC	ENSG00000132938				26	0	0	22	15	40.5405
CCDC169-SOHLH2	0	genome.wustl.edu	37	13	36748935	36748935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	13	36748935	36748935	G	A	SNP	CCDC169-SOHLH2	ENST00000511166	human	ensembl	74_37	-1	known	missense	c.944	p.A315V	0.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	CCDC169-SOHLH2	HGNC	ENSG00000250709				94	0	0	27	48	64
CRIP2	0	genome.wustl.edu	37	14	105945789	105945789	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	14	105945789	105945789	A	G	SNP	CRIP2	ENST00000329146	human	ensembl	74_37	+1	known	missense	c.518	p.Y173C	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	CRIP2	HGNC	ENSG00000182809				156	0	0	123	14	10.219
ADAM21P1	0	genome.wustl.edu	37	14	70713708	70713708	+	RNA	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	14	70713708	70713708	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812				126	0	0	108	18	14.2857
SIPA1L1	0	genome.wustl.edu	37	14	72054702	72054702	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	14	72054702	72054702	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.113	p.R38H	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				160	0	0	105	22	17.3228
FLRT2	0	genome.wustl.edu	37	14	86089570	86089570	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	14	86089570	86089570	G	A	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1712	p.R571H	1.000	NULL	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070				181	0	0	115	25	17.8571
SERPINA10	0	genome.wustl.edu	37	14	94756415	94756415	+	Silent	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	14	94756415	94756415	A	G	SNP	SERPINA10	ENST00000261994	human	ensembl	74_37	-1	known	silent	c.516	p.F172	0.007	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA10	HGNC	ENSG00000140093				134	0	0	84	21	20
NPAP1	0	genome.wustl.edu	37	15	24922516	24922516	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	15	24922516	24922516	C	G	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.1502	p.P501R	0.004	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823				302	0	0	105	60	36.3636
LTK	0	genome.wustl.edu	37	15	41805064	41805064	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	15	41805064	41805064	G	T	SNP	LTK	ENST00000263800	human	ensembl	74_37	-1	known	missense	c.200	p.S67Y	0.005	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LTK	HGNC	ENSG00000062524				62	0	0	27	6	18.1818
SLC12A1	0	genome.wustl.edu	37	15	48521412	48521412	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	15	48521412	48521412	A	C	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.751	p.S251R	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				10	0	0	4	3	42.8571
FBN1	0	genome.wustl.edu	37	15	48766498	48766498	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	15	48766498	48766498	G	A	SNP	FBN1	ENST00000537463	human	ensembl	74_37	-1	known	missense	c.836	p.A279V	1.000	NULL	superfamily_TB_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				34	0	0	28	8	22.2222
ENSG00000259285	0	genome.wustl.edu	37	15	58357679	58357679	+	RNA	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	15	58357679	58357679	G	A	SNP	ENSG00000259285	ENST00000559684	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2330J20.2	Clone_based_vega_gene	ENSG00000259285				63	0	0	32	11	25.5814
PDXDC1	0	genome.wustl.edu	37	16	15122811	15122811	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	16	15122811	15122811	G	A	SNP	PDXDC1	ENST00000396410	human	ensembl	74_37	+1	known	silent	c.1281	p.A427	0.002	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PDXDC1	HGNC	ENSG00000179889				42	0	0	24	17	41.4634
DPEP1	0	genome.wustl.edu	37	16	89702385	89702385	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	16	89702385	89702385	G	A	SNP	DPEP1	ENST00000261615	human	ensembl	74_37	+1	known	silent	c.174	p.L58	0.423	pfam_Peptidase_M19	pfam_Peptidase_M19	-	no_errors	DPEP1	HGNC	ENSG00000015413				34	0	0	37	5	11.9048
MC1R	0	genome.wustl.edu	37	16	89986303	89986303	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	16	89986303	89986303	C	T	SNP	MC1R	ENST00000555147	human	ensembl	74_37	+1	known	missense	c.637	p.R213W	0.721	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MSH_rcpt,prints_Melcrt_ACTH_rcpt,prints_GPCR_Rhodpsn,prints_Melancort_rcpt	-	no_errors	MC1R	HGNC	ENSG00000258839				41	0	0	31	3	8.82353
DNAH9	0	genome.wustl.edu	37	17	11554622	11554622	+	Silent	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	11554622	11554622	T	G	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.2334	p.T778	0.565	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				76	0	0	25	51	67.1053
CCL8	0	genome.wustl.edu	37	17	32647376	32647376	+	Silent	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	32647376	32647376	C	A	SNP	CCL8	ENST00000394620	human	ensembl	74_37	+1	known	silent	c.165	p.T55	0.667	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL8	HGNC	ENSG00000108700				58	0	0	32	9	21.9512
KRT25	0	genome.wustl.edu	37	17	38907471	38907471	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	38907471	38907471	G	A	SNP	KRT25	ENST00000312150	human	ensembl	74_37	-1	known	silent	c.777	p.Y259	1.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT25	HGNC	ENSG00000204897				79	0	0	125	46	26.9006
KRT26	0	genome.wustl.edu	37	17	38927474	38927474	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	38927474	38927474	G	A	SNP	KRT26	ENST00000335552	human	ensembl	74_37	-1	known	silent	c.456	p.T152	0.044	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT26	HGNC	ENSG00000186393				29	0	0	80	9	10.1124
ZZEF1	0	genome.wustl.edu	37	17	3921227	3921227	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	3921227	3921227	C	T	SNP	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	missense	c.7544	p.R2515Q	1.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				87	0	0	83	9	9.78261
MLX	0	genome.wustl.edu	37	17	40721585	40721585	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	40721585	40721585	C	T	SNP	MLX	ENST00000246912	human	ensembl	74_37	+1	known	missense	c.599	p.T200M	0.991	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MLX	HGNC	ENSG00000108788				68	0	0	131	20	13.245
RABEP1	0	genome.wustl.edu	37	17	5264577	5264577	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	5264577	5264577	C	T	SNP	RABEP1	ENST00000262477	human	ensembl	74_37	+1	known	silent	c.1170	p.F390	1.000	NULL	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP1	HGNC	ENSG00000029725				73	0	0	59	4	6.34921
TMEM104	0	genome.wustl.edu	37	17	72784932	72784932	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	72784932	72784932	G	A	SNP	TMEM104	ENST00000335464	human	ensembl	74_37	+1	known	missense	c.172	p.V58M	0.702	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	TMEM104	HGNC	ENSG00000109066				65	0	0	47	5	9.61538
TP53	0	genome.wustl.edu	37	17	7577094	7577094	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	7577094	7577094	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.844	p.R282W	0.997	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				43	0	0	13	40	75.4717
KCNAB3	0	genome.wustl.edu	37	17	7829022	7829022	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	7829022	7829022	T	C	SNP	KCNAB3	ENST00000303790	human	ensembl	74_37	-1	known	missense	c.517	p.S173G	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB3,prints_K_chnl_volt-dep_bsu_KCNAB1,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB3	HGNC	ENSG00000170049				253	0	0	283	37	11.5625
CXADRP3	0	genome.wustl.edu	37	18	14479143	14479143	+	RNA	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	18	14479143	14479143	T	C	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766				40	0	0	17	14	45.1613
DSG4	0	genome.wustl.edu	37	18	28980860	28980860	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	18	28980860	28980860	G	A	SNP	DSG4	ENST00000359747	human	ensembl	74_37	+1	known	missense	c.1294	p.D432N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG4	HGNC	ENSG00000175065				97	0	0	83	17	17
CCDC151	0	genome.wustl.edu	37	19	11531515	11531515	+	Silent	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	11531515	11531515	A	C	SNP	CCDC151	ENST00000356392	human	ensembl	74_37	-1	known	silent	c.1776	p.S592	0.000	NULL	NULL	-	no_errors	CCDC151	HGNC	ENSG00000198003				87	0	0	96	8	7.69231
CHERP	0	genome.wustl.edu	37	19	16641681	16641681	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	16641681	16641681	G	A	SNP	CHERP	ENST00000546361	human	ensembl	74_37	-1	known	nonsense	c.685	p.Q229*	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS	pfam_Surp,pfam_G_patch_dom,pfam_RNA_pol_II-bd,superfamily_Surp,superfamily_ENTH_VHS,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	CHERP	HGNC	ENSG00000085872				49	0	0	51	12	19.0476
NWD1	0	genome.wustl.edu	37	19	16884108	16884108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	16884108	16884108	G	A	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.2582	p.R861Q	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				59	0	0	42	12	22.2222
DOT1L	0	genome.wustl.edu	37	19	2210445	2210445	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	2210445	2210445	G	A	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	missense	c.1052	p.S351N	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885				9	0	0	38	2	5
LINGO3	0	genome.wustl.edu	37	19	2290977	2290977	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	2290977	2290977	G	A	SNP	LINGO3	ENST00000404279	human	ensembl	74_37	-1	known	missense	c.799	p.R267W	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO3	HGNC	ENSG00000220008				39	0	0	70	13	15.6627
FBXO46	0	genome.wustl.edu	37	19	46215503	46215503	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	46215503	46215503	G	A	SNP	FBXO46	ENST00000317683	human	ensembl	74_37	-1	known	silent	c.1251	p.D417	0.044	NULL	superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO46	HGNC	ENSG00000177051				33	0	0	95	9	8.65385
CCDC114	0	genome.wustl.edu	37	19	48806095	48806095	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	48806095	48806095	G	A	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	missense	c.985	p.R329C	0.001	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				141	0	0	92	18	16.3636
KLK8	0	genome.wustl.edu	37	19	51501058	51501058	+	Silent	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	51501058	51501058	G	T	SNP	KLK8	ENST00000391806	human	ensembl	74_37	-1	known	silent	c.711	p.I237	0.480	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK8	HGNC	ENSG00000129455				115	0	0	61	19	23.75
TPM3P9	0	genome.wustl.edu	37	19	53945679	53945679	+	RNA	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	53945679	53945679	T	G	SNP	TPM3P9	ENST00000424846	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TPM3P9	HGNC	ENSG00000241015				56	0	0	44	3	6.38298
KIR2DL4	0	genome.wustl.edu	37	19	55324712	55324712	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	55324712	55324712	A	C	SNP	KIR2DL4	ENST00000396284	human	ensembl	74_37	+1	known	missense	c.833	p.N278T	0.000	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013				33	0	0	33	8	19.5122
MUC16	0	genome.wustl.edu	37	19	9003640	9003640	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	9003640	9003640	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.40000	p.L13334M	0.315	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				244	0	0	138	87	38.6667
MUC16	0	genome.wustl.edu	37	19	9059771	9059771	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	9059771	9059771	C	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.27675	p.M9225I	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				89	0	0	88	35	28.4553
BUB1	0	genome.wustl.edu	37	2	111415164	111415164	+	Silent	SNP	A	A	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	111415164	111415164	A	T	SNP	BUB1	ENST00000302759	human	ensembl	74_37	-1	known	silent	c.1575	p.S525	1.000	NULL	pfam_Mad3_BUB1_I,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Mad3_BUB1_I,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	BUB1	HGNC	ENSG00000169679				83	0	0	49	14	22.2222
LRP1B	0	genome.wustl.edu	37	2	141004675	141004675	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	141004675	141004675	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13304	p.K4435T	0.998	NULL	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				62	0	0	31	10	24.3902
NEB	0	genome.wustl.edu	37	2	152529051	152529051	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	152529051	152529051	G	A	SNP	NEB	ENST00000397345	human	ensembl	74_37	-1	known	silent	c.4131	p.T1377	0.999	pfam_Nebulin_35r-motif,pfscan_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_Adhesion_dom,superfamily_6-PGluconate_DH_C-like,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_Nebulin	-	no_errors	NEB	HGNC	ENSG00000183091				91	0	0	73	6	7.59494
NBAS	0	genome.wustl.edu	37	2	15542374	15542374	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	15542374	15542374	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.2989	p.E997K	0.971	pfam_Sec39	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				99	0	0	143	31	17.8161
ANKRD44	0	genome.wustl.edu	37	2	197865188	197865188	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	197865188	197865188	C	A	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	missense	c.2399	p.G800V	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413				77	0	0	67	9	11.8421
ALS2CR12	0	genome.wustl.edu	37	2	202216070	202216070	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	202216070	202216070	G	A	SNP	ALS2CR12	ENST00000286190	human	ensembl	74_37	-1	known	missense	c.58	p.R20W	0.838	NULL	superfamily_t-SNARE	-	no_errors	ALS2CR12	HGNC	ENSG00000155749				70	0	0	42	48	53.3333
GDF7	0	genome.wustl.edu	37	2	20871023	20871023	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	20871023	20871023	C	T	SNP	GDF7	ENST00000272224	human	ensembl	74_37	+1	known	silent	c.1191	p.I397	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF7	HGNC	ENSG00000143869				53	0	0	36	20	35.7143
VWC2L	0	genome.wustl.edu	37	2	215279303	215279303	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	215279303	215279303	T	A	SNP	VWC2L	ENST00000312504	human	ensembl	74_37	+1	known	missense	c.386	p.F129Y	1.000	smart_VWF_C,pfscan_VWF_C	smart_VWF_C,pfscan_VWF_C	-	no_errors	VWC2L	HGNC	ENSG00000174453				24	0	0	22	4	15.3846
ASB1	0	genome.wustl.edu	37	2	239353036	239353036	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	239353036	239353036	G	T	SNP	ASB1	ENST00000264607	human	ensembl	74_37	+1	known	missense	c.548	p.R183L	0.031	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB1	HGNC	ENSG00000065802				49	0	0	59	29	32.9545
ITSN2	0	genome.wustl.edu	37	2	24480916	24480916	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	24480916	24480916	G	A	SNP	ITSN2	ENST00000355123	human	ensembl	74_37	-1	known	missense	c.2729	p.T910I	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN2	HGNC	ENSG00000198399				108	0	0	100	15	13.0435
FAM179A	0	genome.wustl.edu	37	2	29246051	29246051	+	Silent	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	29246051	29246051	T	C	SNP	FAM179A	ENST00000379558	human	ensembl	74_37	+1	known	silent	c.1611	p.T537	0.004	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,superfamily_ARM-type_fold	-	no_errors	FAM179A	HGNC	ENSG00000189350				16	0	0	9	3	25
FAM161A	0	genome.wustl.edu	37	2	62066655	62066655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	62066655	62066655	C	T	SNP	FAM161A	ENST00000405894	human	ensembl	74_37	-1	known	missense	c.1484	p.R495H	0.000	pfam_UPF0564	pfam_UPF0564	-	no_errors	FAM161A	HGNC	ENSG00000170264				109	0	0	70	23	24.7312
CD8B	0	genome.wustl.edu	37	2	87085225	87085225	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	87085225	87085225	C	T	SNP	CD8B	ENST00000331469	human	ensembl	74_37	-1	known	missense	c.358	p.G120R	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD8B	HGNC	ENSG00000172116				188	0	0	184	27	12.7962
MITD1	0	genome.wustl.edu	37	2	99797402	99797402	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	99797402	99797402	C	A	SNP	MITD1	ENST00000289359	human	ensembl	74_37	-1	known	missense	c.43	p.A15S	0.981	pfam_MIT,smart_MIT	pfam_MIT,smart_MIT	-	no_errors	MITD1	HGNC	ENSG00000158411				86	0	0	60	10	14.2857
C20orf26	0	genome.wustl.edu	37	20	20243713	20243713	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	20	20243713	20243713	C	T	SNP	C20orf26	ENST00000245957	human	ensembl	74_37	+1	known	silent	c.2442	p.N814	0.041	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	C20orf26	HGNC	ENSG00000089101				126	0	0	99	71	41.7647
TSHZ2	0	genome.wustl.edu	37	20	51870644	51870644	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	20	51870644	51870644	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.647	p.R216Q	1.000	smart_Znf_C2H2-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				61	0	0	35	24	40.678
DIDO1	0	genome.wustl.edu	37	20	61512623	61512623	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	20	61512623	61512623	T	A	SNP	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	missense	c.4685	p.Q1562L	1.000	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				74	0	0	86	14	14
DGCR14	0	genome.wustl.edu	37	22	19130142	19130142	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	22	19130142	19130142	C	T	SNP	DGCR14	ENST00000252137	human	ensembl	74_37	-1	known	silent	c.309	p.V103	1.000	pfam_Nuclear_protein_DGCR14	pfam_Nuclear_protein_DGCR14	-	no_errors	DGCR14	HGNC	ENSG00000100056				137	0	0	51	43	45.7447
DMC1	0	genome.wustl.edu	37	22	38962648	38962648	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	22	38962648	38962648	C	T	SNP	DMC1	ENST00000216024	human	ensembl	74_37	-1	known	missense	c.190	p.G64R	1.000	superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,tigrfam_DMC1_rcmbase	pfam_DNA_recomb/repair_Rad51_C,pfam_DNA_recomb/repair_RecA,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_AAA+_ATPase,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd,pfscan_RecA_monomer-monomer_interface,tigrfam_DMC1_rcmbase	-	no_errors	DMC1	HGNC	ENSG00000100206				61	0	0	17	15	46.875
SEMA5B	0	genome.wustl.edu	37	3	122630793	122630793	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	3	122630793	122630793	C	T	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.3182	p.R1061H	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684				33	0	0	11	13	54.1667
GYG1	0	genome.wustl.edu	37	3	148742051	148742051	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	3	148742051	148742051	G	A	SNP	GYG1	ENST00000345003	human	ensembl	74_37	+1	known	missense	c.820	p.V274I	0.000	NULL	pfam_Glyco_trans_8	-	no_errors	GYG1	HGNC	ENSG00000163754				93	0	0	32	53	62.3529
TNIK	0	genome.wustl.edu	37	3	170805248	170805248	+	Silent	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	3	170805248	170805248	A	G	SNP	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	silent	c.2769	p.F923	0.087	NULL	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				152	0	0	219	17	7.20339
ROBO2	0	genome.wustl.edu	37	3	77666773	77666773	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	3	77666773	77666773	C	T	SNP	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	nonsense	c.3403	p.R1135*	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008				125	0	0	39	36	48
ANK2	0	genome.wustl.edu	37	4	114204000	114204000	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	114204000	114204000	A	G	SNP	ANK2	ENST00000357077	human	ensembl	74_37	+1	known	missense	c.2051	p.K684R	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK2	HGNC	ENSG00000145362				70	0	0	31	23	42.5926
NPY2R	0	genome.wustl.edu	37	4	156135406	156135406	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	156135406	156135406	G	A	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	silent	c.315	p.P105	0.846	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPFF_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149				73	0	0	24	21	46.6667
PDGFC	0	genome.wustl.edu	37	4	157771437	157771437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	157771437	157771437	C	T	SNP	PDGFC	ENST00000502773	human	ensembl	74_37	-1	known	missense	c.250	p.V84I	0.082	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,smart_PDGF/VEGF_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFC	HGNC	ENSG00000145431				59	0	0	36	8	18.1818
MSMO1	0	genome.wustl.edu	37	4	166258981	166258981	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	166258981	166258981	A	G	SNP	MSMO1	ENST00000261507	human	ensembl	74_37	+1	known	missense	c.296	p.K99R	1.000	NULL	pfam_Fatty_acid_hydroxylase	-	no_errors	MSMO1	HGNC	ENSG00000052802				93	0	0	55	4	6.77966
GPM6A	0	genome.wustl.edu	37	4	176622915	176622915	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	176622915	176622915	C	A	SNP	GPM6A	ENST00000280187	human	ensembl	74_37	-1	known	missense	c.41	p.C14F	1.000	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6A	HGNC	ENSG00000150625				112	0	0	36	11	23.4043
SHISA3	0	genome.wustl.edu	37	4	42403249	42403249	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	42403249	42403249	G	A	SNP	SHISA3	ENST00000319234	human	ensembl	74_37	+1	known	silent	c.498	p.T166	1.000	NULL	NULL	-	no_errors	SHISA3	HGNC	ENSG00000178343				176	0	0	60	63	51.2195
KCTD8	0	genome.wustl.edu	37	4	44449773	44449773	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	44449773	44449773	G	A	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	silent	c.768	p.R256	0.993	NULL	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783				32	0	0	16	7	30.4348
CWH43	0	genome.wustl.edu	37	4	48993570	48993570	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	48993570	48993570	G	T	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	missense	c.335	p.W112L	1.000	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182				147	1	0.675676	32	58	64.4444
DCUN1D4	0	genome.wustl.edu	37	4	52779533	52779533	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	52779533	52779533	C	T	SNP	DCUN1D4	ENST00000451288	human	ensembl	74_37	+1	known	silent	c.930	p.L310	1.000	pfam_PONY_dom	pfam_PONY_dom	-	no_errors	DCUN1D4	HGNC	ENSG00000109184				56	0	0	20	12	37.5
EPHA5	0	genome.wustl.edu	37	4	66356300	66356300	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	4	66356300	66356300	G	A	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	silent	c.1197	p.N399	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				81	0	0	37	7	15.9091
APBB3	0	genome.wustl.edu	37	5	139940666	139940666	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	139940666	139940666	T	G	SNP	APBB3	ENST00000356738	human	ensembl	74_37	-1	known	missense	c.868	p.S290R	1.000	NULL	pfam_PTB/PI_dom,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB3	HGNC	ENSG00000113108				363	0	0	113	114	50.2203
PCDHB6	0	genome.wustl.edu	37	5	140531624	140531624	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	140531624	140531624	C	A	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.1786	p.Q596K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				112	0	0	35	42	54.5455
TRIM7	0	genome.wustl.edu	37	5	180622459	180622459	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	180622459	180622459	G	A	SNP	TRIM7	ENST00000274773	human	ensembl	74_37	-1	known	missense	c.1243	p.R415C	0.799	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM7	HGNC	ENSG00000146054				23	0	0	13	5	27.7778
SPEF2	0	genome.wustl.edu	37	5	35667221	35667221	+	Silent	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	35667221	35667221	A	G	SNP	SPEF2	ENST00000356031	human	ensembl	74_37	+1	known	silent	c.1215	p.K405	0.987	NULL	pfam_DUF1042,pfam_Adenylate_kin,pfam_HATC_dom_C,superfamily_P-loop_NTPase,superfamily_CH-domain,pfscan_CH-domain	-	no_errors	SPEF2	HGNC	ENSG00000152582				41	0	0	13	55	80.8824
GDNF	0	genome.wustl.edu	37	5	37834836	37834836	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	37834836	37834836	C	T	SNP	GDNF	ENST00000326524	human	ensembl	74_37	-1	known	silent	c.63	p.P21	1.000	pirsf_GDNF	pfam_TGF-b_C,smart_TGF-b_C,pirsf_GDNF	-	no_errors	GDNF	HGNC	ENSG00000168621				53	0	0	127	22	14.7651
EGFLAM	0	genome.wustl.edu	37	5	38258870	38258870	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	38258870	38258870	G	A	SNP	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	missense	c.14	p.R5Q	0.003	NULL	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318				41	0	0	42	3	6.66667
ADAMTS16	0	genome.wustl.edu	37	5	5186212	5186212	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	5186212	5186212	T	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.811	p.Y271N	1.000	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536				207	0	0	135	41	23.2955
SKIV2L2	0	genome.wustl.edu	37	5	54649063	54649063	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	5	54649063	54649063	A	G	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.1499	p.N500S	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_C	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				106	0	0	71	17	19.3182
SIM1	0	genome.wustl.edu	37	6	100897520	100897520	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	100897520	100897520	T	A	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.404	p.E135V	1.000	pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246				93	0	0	54	29	34.9398
RNF217	0	genome.wustl.edu	37	6	125402621	125402621	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	125402621	125402621	G	A	SNP	RNF217	ENST00000560949	human	ensembl	74_37	+1	known	missense	c.818	p.G273E	1.000	NULL	pfam_Znf_C6HC,smart_Znf_C6HC	-	no_errors	RNF217	HGNC	ENSG00000146373				34	0	0	41	11	21.1538
ENPP1	0	genome.wustl.edu	37	6	132194115	132194115	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	132194115	132194115	A	C	SNP	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	missense	c.1490	p.K497T	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594				214	0	0	154	115	42.7509
SGK1	0	genome.wustl.edu	37	6	134494621	134494621	+	Silent	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	134494621	134494621	G	A	SNP	SGK1	ENST00000367858	human	ensembl	74_37	-1	known	silent	c.597	p.I199	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK1	HGNC	ENSG00000118515				61	0	0	139	17	10.8974
TDRD6	0	genome.wustl.edu	37	6	46657611	46657611	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	46657611	46657611	C	T	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.1746	p.D582	0.009	pfam_Tudor,smart_Tudor,pfscan_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113				176	0	0	179	14	7.25389
ACHE	0	genome.wustl.edu	37	7	100490818	100490818	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	100490818	100490818	G	T	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.1036	p.L346I	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085				42	0	0	57	4	6.55738
MUC17	0	genome.wustl.edu	37	7	100677488	100677488	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	100677488	100677488	G	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.2791	p.D931N	0.004	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876				942	0	0	1005	87	7.96703
PSMC2	0	genome.wustl.edu	37	7	102994396	102994396	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	102994396	102994396	G	C	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	missense	c.99	p.L33F	1.000	NULL	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				53	0	0	16	11	40.7407
ZNF777	0	genome.wustl.edu	37	7	149129715	149129715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	149129715	149129715	C	T	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.1648	p.E550K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453				32	0	0	10	4	28.5714
TRIL	0	genome.wustl.edu	37	7	28996249	28996249	+	RNA	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	28996249	28996249	C	T	SNP	TRIL	ENST00000322982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TRIL	HGNC	ENSG00000176734				34	0	0	36	6	14.2857
CCDC129	0	genome.wustl.edu	37	7	31690769	31690769	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	31690769	31690769	A	T	SNP	CCDC129	ENST00000451887	human	ensembl	74_37	+1	known	missense	c.2675	p.E892V	0.926	NULL	NULL	-	no_errors	CCDC129	HGNC	ENSG00000180347				105	0	0	116	25	17.7305
BMPER	0	genome.wustl.edu	37	7	34118544	34118544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	34118544	34118544	C	T	SNP	BMPER	ENST00000297161	human	ensembl	74_37	+1	known	missense	c.1154	p.T385M	1.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_VWF_C,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_C,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_VWF_C	-	no_errors	BMPER	HGNC	ENSG00000164619				174	0	0	136	52	27.6596
STARD3NL	0	genome.wustl.edu	37	7	38247172	38247172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	38247172	38247172	C	T	SNP	STARD3NL	ENST00000009041	human	ensembl	74_37	+1	known	missense	c.67	p.R23C	0.352	NULL	pfam_MENTAL	-	no_errors	STARD3NL	HGNC	ENSG00000010270				97	0	0	102	19	15.7025
SDK1	0	genome.wustl.edu	37	7	4002413	4002413	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	4002413	4002413	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	silent	c.1359	p.S453	0.543	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				40	0	0	28	13	31.7073
POLR2J4	0	genome.wustl.edu	37	7	43992390	43992390	+	RNA	SNP	G	G	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	43992390	43992390	G	A	SNP	POLR2J4	ENST00000427076	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POLR2J4	HGNC	ENSG00000214783				29	0	0	24	6	20
TRPS1	0	genome.wustl.edu	37	8	116631899	116631899	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	8	116631899	116631899	T	G	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.426	p.Q142H	0.996	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				91	0	0	79	27	25.4717
GPIHBP1	0	genome.wustl.edu	37	8	144297360	144297360	+	Silent	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	8	144297360	144297360	C	T	SNP	GPIHBP1	ENST00000330824	human	ensembl	74_37	+1	known	silent	c.522	p.A174	0.000	NULL	pfam_LY6_UPAR	-	no_errors	GPIHBP1	HGNC	ENSG00000182851				21	0	0	36	6	14.2857
HR	0	genome.wustl.edu	37	8	21983209	21983209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	8	21983209	21983209	C	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.1442	p.G481E	0.364	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				34	0	0	10	5	33.3333
PREX2	0	genome.wustl.edu	37	8	68939478	68939478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	8	68939478	68939478	C	T	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.463	p.R155W	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				109	0	0	73	55	42.9688
PI15	0	genome.wustl.edu	37	8	75737570	75737570	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	8	75737570	75737570	A	T	SNP	PI15	ENST00000260113	human	ensembl	74_37	+1	known	missense	c.86	p.D29V	1.000	NULL	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	PI15	HGNC	ENSG00000137558				188	0	0	111	126	53.1646
ZNF618	0	genome.wustl.edu	37	9	116811236	116811236	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	9	116811236	116811236	A	C	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.1654	p.T552P	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				16	0	0	15	4	21.0526
FAM129B	0	genome.wustl.edu	37	9	130279138	130279138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	9	130279138	130279138	C	T	SNP	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	missense	c.971	p.R324Q	1.000	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				453	0	0	257	143	35.75
PPP1R26	0	genome.wustl.edu	37	9	138377878	138377878	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	9	138377878	138377878	G	T	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.1522	p.A508S	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422				97	0	0	74	24	24.4898
IFNA5	0	genome.wustl.edu	37	9	21304767	21304767	+	Silent	SNP	T	T	A			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	9	21304767	21304767	T	A	SNP	IFNA5	ENST00000259555	human	ensembl	74_37	-1	known	silent	c.489	p.A163	1.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA5	HGNC	ENSG00000147873				354	0	0	133	133	50
FRMD3	0	genome.wustl.edu	37	9	85863158	85863158	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	9	85863158	85863158	T	G	SNP	FRMD3	ENST00000304195	human	ensembl	74_37	-1	known	missense	c.1469	p.E490A	1.000	NULL	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FRMD3	HGNC	ENSG00000172159				193	0	0	124	21	14.4828
DOCK11	0	genome.wustl.edu	37	X	117752692	117752692	+	Splice_Site	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	X	117752692	117752692	G	C	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	splice_site	c.3471+1	e31+1	1.000	-	-	-	no_errors	DOCK11	HGNC	ENSG00000147251				70	0	0	68	11	13.9241
MAGEA3	0	genome.wustl.edu	37	X	151935401	151935401	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	X	151935401	151935401	G	C	SNP	MAGEA3	ENST00000370278	human	ensembl	74_37	-1	known	missense	c.766	p.L256V	0.002	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA3	HGNC	ENSG00000221867				271	0	0	207	27	11.5385
MXRA5	0	genome.wustl.edu	37	X	3239828	3239828	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	X	3239828	3239828	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.3898	p.R1300G	0.001	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				181	0	0	75	5	6.25
MSN	0	genome.wustl.edu	37	X	64957071	64957071	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	X	64957071	64957071	A	C	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	missense	c.1122	p.E374D	1.000	pirsf_ERM,pfam_ERM_C_dom	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				30	0	0	7	12	63.1579
VCX3B	0	genome.wustl.edu	37	X	8433819	8433819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	X	8433819	8433819	C	T	SNP	VCX3B	ENST00000444481	human	ensembl	74_37	+1	known	missense	c.136	p.R46C	0.000	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642				12	0	0	3	5	62.5
DISP1	0	genome.wustl.edu	37	1	223178997	223178998	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	1	223178997	223178998	AG	-	DEL	DISP1	ENST00000284476	human	ensembl	74_37	+1	novel	frame_shift_del	c.4258_4259	p.D1421fs	0.006:0.778	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	DISP1	HGNC	ENSG00000154309				121	0	0	82	30	26.7857
SENP1	0	genome.wustl.edu	37	12	48458896	48458896	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	12	48458896	48458896	T	-	DEL	SENP1	ENST00000004980	human	ensembl	74_37	-1	known	frame_shift_del	c.1227	p.G410fs	0.206	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP1	HGNC	ENSG00000079387				41	0	0	21	9	30
SGK494	0	genome.wustl.edu	37	17	26940497	26940498	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	17	26940497	26940498	CT	-	DEL	SGK494	ENST00000301037	human	ensembl	74_37	-1	known	frame_shift_del	c.285_284	p.E95fs	0.992:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524				113	0	0	52	45	46.3918
ENSG00000266156	0	genome.wustl.edu	37	19	20988370	20988370	+	RNA	DEL	T	T	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	19	20988370	20988370	T	-	DEL	ENSG00000266156	ENST00000582722	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC010329.1	Clone_based_ensembl_gene	ENSG00000266156				13	0	0	8	5	38.4615
CENPO	0	genome.wustl.edu	37	2	25038399	25038410	+	In_Frame_Del	DEL	GTGTCTGCATCA	GTGTCTGCATCA	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	GTGTCTGCATCA	GTGTCTGCATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	2	25038399	25038410	GTGTCTGCATCA	-	DEL	CENPO	ENST00000260662	human	ensembl	74_37	+1	known	in_frame_del	c.368_379	p.VCIS124in_frame_del	0.990:0.414:0.474:0.900:0.903:0.995:1.000:1.000:1.000:1.000:1.000:1.000	pfam_CENP-O	pfam_CENP-O	-	no_errors	CENPO	HGNC	ENSG00000138092				119	0	0	120	41	25.4658
TNIK	0	genome.wustl.edu	37	3	170912366	170912366	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	3	170912366	170912366	C	-	DEL	TNIK	ENST00000436636	human	ensembl	74_37	-1	known	frame_shift_del	c.365	p.G122fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	TNIK	HGNC	ENSG00000154310				242	0	0	451	35	7.20165
PARK2	0	genome.wustl.edu	37	6	161990446	161990447	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	6	161990446	161990447	-	T	INS	PARK2	ENST00000366898	human	ensembl	74_37	-1	known	frame_shift_ins	c.874_873	p.G291fs	1.000:1.000	pirsf_Parkin	pfam_Ubiquitin_dom,pfam_Znf_C6HC,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,smart_Znf_C6HC,pirsf_Parkin,pfscan_Ubiquitin_supergroup,prints_Parkin,prints_Ubiquitin	-	no_errors	PARK2	HGNC	ENSG00000185345				90	0	0	36	25	40.9836
PRSS3P2	0	genome.wustl.edu	37	7	142482280	142482280	+	RNA	DEL	T	T	-			TCGA-BR-A4QI-01A-12D-A25D-08	TCGA-BR-A4QI-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	699db1f3-e03d-4f08-89c9-40a77a78c2f1	9e553223-b1fc-43e1-b357-3f22bc1e89f5	7	142482280	142482280	T	-	DEL	PRSS3P2	ENST00000603901	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRSS3P2	HGNC	ENSG00000250606				60	0	0	17	2	10.5263
