Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LRRC39	0	genome.wustl.edu	37	1	100618013	100618013	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	100618013	100618013	C	T	SNP	LRRC39	ENST00000370138	human	ensembl	74_37	-1	known	missense	c.880	p.E294K	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC39	HGNC	ENSG00000122477				154	0	0	83	70	45.7516
RTCA	0	genome.wustl.edu	37	1	100756997	100756997	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	100756997	100756997	C	T	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	silent	c.1077	p.D359	0.993	superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996				141	0	0	85	49	36.5672
S1PR1	0	genome.wustl.edu	37	1	101705418	101705418	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	101705418	101705418	C	T	SNP	S1PR1	ENST00000305352	human	ensembl	74_37	+1	known	missense	c.878	p.A293V	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_S1P_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_EDG1_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn,prints_Melcrt_ACTH_rcpt	-	no_errors	S1PR1	HGNC	ENSG00000170989				294	0	0	175	104	37.276
COL11A1	0	genome.wustl.edu	37	1	103491152	103491152	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	103491152	103491152	A	G	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.951	p.D317	0.989	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				49	0	0	29	20	40.8163
AMY2B	0	genome.wustl.edu	37	1	104120026	104120026	+	RNA	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	104120026	104120026	A	T	SNP	AMY2B	ENST00000481821	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AMY2B	HGNC	ENSG00000240038				48	0	0	29	12	29.2683
AMY2B	0	genome.wustl.edu	37	1	104120145	104120145	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	104120145	104120145	A	G	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1135	p.N379D	0.985	superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				194	0	0	113	55	32.7381
AMY2B	0	genome.wustl.edu	37	1	104120389	104120389	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	104120389	104120389	A	G	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.1268	p.N423S	1.000	smart_A-amylase_b_C	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038				193	0	0	131	91	40.991
CASZ1	0	genome.wustl.edu	37	1	10700033	10700033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	10700033	10700033	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	74_37	-1	known	missense	c.4246	p.R1416W	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940				58	0	0	25	22	46.8085
EPS8L3	0	genome.wustl.edu	37	1	110300588	110300588	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	110300588	110300588	C	T	SNP	EPS8L3	ENST00000369805	human	ensembl	74_37	-1	known	silent	c.813	p.G271	0.936	NULL	pfam_PTB,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	EPS8L3	HGNC	ENSG00000198758				126	0	0	94	10	9.61538
KCNA3	0	genome.wustl.edu	37	1	111216137	111216137	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	111216137	111216137	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	missense	c.1295	p.P432L	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				71	0	0	28	19	40.4255
KCNA3	0	genome.wustl.edu	37	1	111217309	111217309	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	111217309	111217309	C	T	SNP	KCNA3	ENST00000369769	human	ensembl	74_37	-1	known	silent	c.123	p.A41	0.451	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC	ENSG00000177272				20	0	0	4	7	63.6364
MTOR	0	genome.wustl.edu	37	1	11303337	11303337	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	11303337	11303337	T	C	SNP	MTOR	ENST00000361445	human	ensembl	74_37	-1	known	missense	c.1246	p.T416A	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_Rapamycin-bd_dom,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_Rapamycin-bd_dom,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793				91	0	0	57	46	44.6602
MOV10	0	genome.wustl.edu	37	1	113231495	113231495	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	113231495	113231495	G	A	SNP	MOV10	ENST00000496577	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MOV10	HGNC	ENSG00000155363				20	0	0	13	15	53.5714
MAGI3	0	genome.wustl.edu	37	1	114225544	114225544	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	114225544	114225544	G	A	SNP	MAGI3	ENST00000307546	human	ensembl	74_37	+1	novel	silent	c.3354	p.S1118	0.998	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI3	HGNC	ENSG00000081026				24	0	0	26	9	25.7143
SLC22A15	0	genome.wustl.edu	37	1	116534699	116534699	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	116534699	116534699	G	A	SNP	SLC22A15	ENST00000369503	human	ensembl	74_37	+1	known	silent	c.135	p.T45	0.394	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A15	HGNC	ENSG00000163393				38	0	0	18	19	51.3514
IGSF3	0	genome.wustl.edu	37	1	117150572	117150572	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	117150572	117150572	A	G	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	missense	c.1214	p.L405P	0.998	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				111	1	0.892857	69	48	41.0256
IGSF3	0	genome.wustl.edu	37	1	117150721	117150721	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	117150721	117150721	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.1065	p.S355	0.543	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				111	0	0	66	35	34.6535
IGSF3	0	genome.wustl.edu	37	1	117150811	117150811	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	117150811	117150811	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.975	p.I325	0.498	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061				29	0	0	8	11	57.8947
DRAXIN	0	genome.wustl.edu	37	1	11766419	11766419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	11766419	11766419	G	A	SNP	DRAXIN	ENST00000294485	human	ensembl	74_37	+1	known	missense	c.104	p.R35Q	0.000	NULL	NULL	-	no_errors	DRAXIN	HGNC	ENSG00000162490				47	0	0	33	18	35.2941
CLCN6	0	genome.wustl.edu	37	1	11900199	11900199	+	Splice_Site	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	11900199	11900199	G	C	SNP	CLCN6	ENST00000346436	human	ensembl	74_37	+1	known	splice_site	c.2530-1	e23-1	1.000	-	-	-	no_errors	CLCN6	HGNC	ENSG00000011021				93	0	0	65	42	39.2523
HAO2	0	genome.wustl.edu	37	1	119923812	119923812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	119923812	119923812	G	A	SNP	HAO2	ENST00000361035	human	ensembl	74_37	+1	known	missense	c.143	p.R48Q	0.567	pfam_FMN-dep_DH,pirsf_Alpha-hydoxy_acid_DH_FMN	pfam_FMN-dep_DH,pfam_IMP_DH_GMPRt,pfam_Glu_synth_centr_C,pirsf_Alpha-hydoxy_acid_DH_FMN	-	no_errors	HAO2	HGNC	ENSG00000116882				106	0	0	80	49	37.9845
HMGCS2	0	genome.wustl.edu	37	1	120302555	120302555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	120302555	120302555	C	T	SNP	HMGCS2	ENST00000369406	human	ensembl	74_37	-1	known	missense	c.617	p.R206H	1.000	pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	pfam_HMG_CoA_synt_C,pfam_HMG_CoA_synth_N,superfamily_Thiolase-like,tigrfam_HMG_CoA_synthase_euk	-	no_errors	HMGCS2	HGNC	ENSG00000134240				63	0	0	36	25	40.9836
NOTCH2	0	genome.wustl.edu	37	1	120539712	120539712	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	120539712	120539712	C	T	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.659	p.S220N	0.461	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250				55	0	0	39	23	37.0968
VPS13D	0	genome.wustl.edu	37	1	12401935	12401935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	12401935	12401935	C	T	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.8725	p.P2909S	1.000	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707				99	0	0	65	33	33.6735
MXRA8	0	genome.wustl.edu	37	1	1290355	1290355	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1290355	1290355	G	A	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	missense	c.656	p.A219V	0.998	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				9	0	0	7	4	36.3636
PRAMEF4	0	genome.wustl.edu	37	1	12943044	12943044	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	12943044	12943044	C	T	SNP	PRAMEF4	ENST00000235349	human	ensembl	74_37	-1	known	missense	c.172	p.V58M	0.717	NULL	NULL	-	no_errors	PRAMEF4	HGNC	ENSG00000243073				116	0	0	125	14	10.0719
CCNL2	0	genome.wustl.edu	37	1	1322694	1322694	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1322694	1322694	G	A	SNP	CCNL2	ENST00000400809	human	ensembl	74_37	-1	known	nonsense	c.1480	p.R494*	0.996	pirsf_Cyclin_L	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL2	HGNC	ENSG00000221978				128	0	0	71	49	40.8333
PRDM2	0	genome.wustl.edu	37	1	14075941	14075941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	14075941	14075941	C	T	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	missense	c.470	p.A157V	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731				20	0	0	20	7	25.9259
PIAS3	0	genome.wustl.edu	37	1	145581207	145581207	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	145581207	145581207	T	C	SNP	PIAS3	ENST00000393045	human	ensembl	74_37	+1	known	silent	c.936	p.P312	0.529	pfscan_Znf_MIZ	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS3	HGNC	ENSG00000131788				59	0	0	32	18	36
BCL9	0	genome.wustl.edu	37	1	147096166	147096166	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	147096166	147096166	C	T	SNP	BCL9	ENST00000234739	human	ensembl	74_37	+1	known	silent	c.3687	p.T1229	0.953	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9	HGNC	ENSG00000116128				113	0	0	63	34	35.0515
SV2A	0	genome.wustl.edu	37	1	149882489	149882489	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	149882489	149882489	C	G	SNP	SV2A	ENST00000369146	human	ensembl	74_37	-1	known	missense	c.844	p.E282Q	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_SV2	-	no_errors	SV2A	HGNC	ENSG00000159164				51	0	0	26	11	29.7297
ADAMTSL4	0	genome.wustl.edu	37	1	150525976	150525976	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	150525976	150525976	G	A	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	missense	c.509	p.R170Q	1.000	pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				98	0	0	56	27	32.5301
POGZ	0	genome.wustl.edu	37	1	151397495	151397495	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	151397495	151397495	C	T	SNP	POGZ	ENST00000271715	human	ensembl	74_37	-1	known	missense	c.1121	p.R374Q	1.000	NULL	pfam_DDE_SF_endonuclease_CENPB-like,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_HTH_CenpB_DNA-bd_dom,pfscan_Znf_C2H2	-	no_errors	POGZ	HGNC	ENSG00000143442				18	0	0	7	4	36.3636
NBPF18P	0	genome.wustl.edu	37	1	151994944	151994944	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	151994944	151994944	C	T	SNP	NBPF18P	ENST00000432386	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF18P	HGNC	ENSG00000229021				28	0	0	17	9	34.6154
FLG	0	genome.wustl.edu	37	1	152283170	152283170	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	152283170	152283170	T	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.4192	p.S1398R	0.002	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				420	0	0	221	156	41.3793
FLG	0	genome.wustl.edu	37	1	152285339	152285339	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	152285339	152285339	C	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.2023	p.D675Y	0.004	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				424	0	0	254	158	38.3495
CRCT1	0	genome.wustl.edu	37	1	152488062	152488062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	152488062	152488062	G	A	SNP	CRCT1	ENST00000368790	human	ensembl	74_37	+1	known	missense	c.203	p.R68H	0.984	NULL	NULL	-	no_errors	CRCT1	HGNC	ENSG00000169509				17	0	0	6	6	50
LCE1D	0	genome.wustl.edu	37	1	152770558	152770558	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	152770558	152770558	G	A	SNP	LCE1D	ENST00000326233	human	ensembl	74_37	+1	known	silent	c.288	p.S96	0.000	NULL	NULL	-	no_errors	LCE1D	HGNC	ENSG00000172155				86	0	0	59	7	10.6061
ATP8B2	0	genome.wustl.edu	37	1	154302929	154302929	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	154302929	154302929	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.188	p.A63V	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515				45	0	0	46	27	36.9863
SHE	0	genome.wustl.edu	37	1	154461771	154461771	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	154461771	154461771	G	T	SNP	SHE	ENST00000304760	human	ensembl	74_37	-1	known	silent	c.780	p.P260	0.995	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHE	HGNC	ENSG00000169291				98	0	0	59	41	41
CHRNB2	0	genome.wustl.edu	37	1	154544057	154544057	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	154544057	154544057	T	C	SNP	CHRNB2	ENST00000368476	human	ensembl	74_37	+1	known	missense	c.758	p.I253T	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB2	HGNC	ENSG00000160716				171	0	0	76	56	42.4242
DCST1	0	genome.wustl.edu	37	1	155015874	155015874	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155015874	155015874	G	A	SNP	DCST1	ENST00000295542	human	ensembl	74_37	+1	known	missense	c.1061	p.R354H	0.958	NULL	pfam_DC_STAMP-like,pfscan_Znf_RING	-	no_errors	DCST1	HGNC	ENSG00000163357				87	0	0	53	19	26.3889
EFNA4	0	genome.wustl.edu	37	1	155041446	155041446	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155041446	155041446	G	A	SNP	EFNA4	ENST00000368409	human	ensembl	74_37	+1	known	missense	c.587	p.R196H	0.995	NULL	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNA4	HGNC	ENSG00000243364				99	0	0	61	37	37.7551
MUC1	0	genome.wustl.edu	37	1	155160514	155160514	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155160514	155160514	C	T	SNP	MUC1	ENST00000368395	human	ensembl	74_37	-1	known	missense	c.914	p.G305D	0.000	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC1	HGNC	ENSG00000185499				132	0	0	85	51	37.5
PKLR	0	genome.wustl.edu	37	1	155265256	155265256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155265256	155265256	G	A	SNP	PKLR	ENST00000342741	human	ensembl	74_37	-1	known	missense	c.479	p.P160L	0.993	pfam_Pyrv_Knase_brl,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKLR	HGNC	ENSG00000143627				11	0	0	5	8	61.5385
RUSC1	0	genome.wustl.edu	37	1	155296779	155296779	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155296779	155296779	G	A	SNP	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	missense	c.2270	p.R757H	0.000	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				94	0	0	58	38	39.5833
ASH1L	0	genome.wustl.edu	37	1	155448107	155448107	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155448107	155448107	T	G	SNP	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	missense	c.4554	p.R1518S	0.997	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539				83	0	0	49	39	44.3182
SEMA4A	0	genome.wustl.edu	37	1	156132858	156132858	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	156132858	156132858	C	T	SNP	SEMA4A	ENST00000355014	human	ensembl	74_37	+1	known	silent	c.1107	p.G369	0.012	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA4A	HGNC	ENSG00000196189				71	0	0	54	20	27.027
RHBG	0	genome.wustl.edu	37	1	156347148	156347148	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	156347148	156347148	C	A	SNP	RHBG	ENST00000368246	human	ensembl	74_37	+1	known	missense	c.244	p.L82M	1.000	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHBG	HGNC	ENSG00000132677				171	0	0	119	65	35.3261
EFHD2	0	genome.wustl.edu	37	1	15755104	15755104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	15755104	15755104	G	A	SNP	EFHD2	ENST00000375980	human	ensembl	74_37	+1	known	missense	c.607	p.V203M	0.002	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHD2	HGNC	ENSG00000142634				26	0	0	19	3	13.6364
OR6K2	0	genome.wustl.edu	37	1	158670411	158670411	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	158670411	158670411	T	C	SNP	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	missense	c.32	p.E11G	0.997	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171				66	0	0	44	21	32.3077
CRP	0	genome.wustl.edu	37	1	159683558	159683558	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	159683558	159683558	A	C	SNP	CRP	ENST00000255030	human	ensembl	74_37	-1	known	silent	c.432	p.T144	0.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	CRP	HGNC	ENSG00000132693				344	0	0	217	140	39.2157
ATP1A2	0	genome.wustl.edu	37	1	160098557	160098557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	160098557	160098557	C	T	SNP	ATP1A2	ENST00000361216	human	ensembl	74_37	+1	known	missense	c.1133	p.T378I	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A2	HGNC	ENSG00000018625				97	0	0	52	26	33.3333
PLEKHM2	0	genome.wustl.edu	37	1	16011067	16011067	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16011067	16011067	A	G	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.14	p.E5G	1.000	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				16	0	0	11	7	38.8889
COPA	0	genome.wustl.edu	37	1	160275305	160275305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	160275305	160275305	G	A	SNP	COPA	ENST00000368069	human	ensembl	74_37	-1	known	missense	c.1612	p.R538C	1.000	pfam_Coatomer_WD-assoc_reg,pirsf_Coatomer_asu	pfam_Coatomer_asu_C,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Coatomer_asu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	COPA	HGNC	ENSG00000122218				100	0	0	58	42	42
PLEKHM2	0	genome.wustl.edu	37	1	16052022	16052022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16052022	16052022	C	T	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.923	p.T308M	0.821	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				8	0	0	4	4	50
PLEKHM2	0	genome.wustl.edu	37	1	16053733	16053733	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16053733	16053733	C	T	SNP	PLEKHM2	ENST00000375799	human	ensembl	74_37	+1	known	missense	c.1166	p.S389F	0.646	NULL	pfam_Run,pfam_Pleckstrin_homology,smart_Run,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Run	-	no_errors	PLEKHM2	HGNC	ENSG00000116786				19	0	0	9	11	55
FCRLA	0	genome.wustl.edu	37	1	161682964	161682964	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	161682964	161682964	C	T	SNP	FCRLA	ENST00000367959	human	ensembl	74_37	+1	known	missense	c.943	p.P315S	0.251	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCRLA	HGNC	ENSG00000132185				102	0	0	46	28	37.8378
FAM131C	0	genome.wustl.edu	37	1	16389001	16389001	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16389001	16389001	G	T	SNP	FAM131C	ENST00000375662	human	ensembl	74_37	-1	known	missense	c.167	p.P56H	1.000	NULL	superfamily_Chromodomain-like	-	no_errors	FAM131C	HGNC	ENSG00000185519				12	0	0	4	3	42.8571
FBXO42	0	genome.wustl.edu	37	1	16583174	16583174	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16583174	16583174	G	A	SNP	FBXO42	ENST00000375592	human	ensembl	74_37	-1	known	missense	c.583	p.P195S	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO42	HGNC	ENSG00000037637				71	0	0	38	20	34.4828
ADCY10	0	genome.wustl.edu	37	1	167839514	167839514	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	167839514	167839514	C	A	SNP	ADCY10	ENST00000367851	human	ensembl	74_37	-1	known	missense	c.1597	p.A533S	1.000	superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10	pfam_A/G_cyclase,superfamily_A/G_cyclase,superfamily_P-loop_NTPase,pirsf_Adenylate_cylcase_typ10,pfscan_A/G_cyclase	-	no_errors	ADCY10	HGNC	ENSG00000143199				61	0	0	37	18	32.7273
NADK	0	genome.wustl.edu	37	1	1685501	1685501	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1685501	1685501	C	T	SNP	NADK	ENST00000344463	human	ensembl	74_37	-1	known	missense	c.1525	p.V509I	1.000	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	pfam_PolyP/ATP_NADK_prd,superfamily_ATP-NAD_kinase_PpnK-typ	-	no_errors	NADK	HGNC	ENSG00000008130				131	0	0	77	44	36.3636
NBPF1	0	genome.wustl.edu	37	1	16914226	16914226	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	16914226	16914226	G	A	SNP	NBPF1	ENST00000430580	human	ensembl	74_37	-1	novel	missense	c.560	p.A187V	0.045	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF1	HGNC	ENSG00000219481				370	0	0	364	85	18.931
C1orf112	0	genome.wustl.edu	37	1	169822720	169822720	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	169822720	169822720	A	G	SNP	C1orf112	ENST00000459772	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.163	-	-	-	no_errors	C1orf112	HGNC	ENSG00000000460				24	0	0	7	9	56.25
CROCC	0	genome.wustl.edu	37	1	17256811	17256811	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	17256811	17256811	G	A	SNP	CROCC	ENST00000375541	human	ensembl	74_37	+1	known	missense	c.652	p.A218T	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CROCC	HGNC	ENSG00000058453				15	0	0	21	7	25
CEP350	0	genome.wustl.edu	37	1	179965804	179965804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	179965804	179965804	G	A	SNP	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	missense	c.512	p.R171Q	0.001	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837				18	0	0	24	4	14.2857
LHX4	0	genome.wustl.edu	37	1	180243343	180243343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	180243343	180243343	G	A	SNP	LHX4	ENST00000263726	human	ensembl	74_37	+1	known	missense	c.802	p.G268S	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX4	HGNC	ENSG00000121454				137	0	0	74	47	38.843
CACNA1E	0	genome.wustl.edu	37	1	181706764	181706764	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	181706764	181706764	G	A	SNP	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	missense	c.3526	p.V1176I	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216				134	0	0	67	48	41.7391
SHCBP1L	0	genome.wustl.edu	37	1	182922237	182922237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	182922237	182922237	G	A	SNP	SHCBP1L	ENST00000367547	human	ensembl	74_37	-1	known	missense	c.32	p.A11V	0.032	NULL	superfamily_Pectin_lyase_fold/virulence,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1	-	no_errors	SHCBP1L	HGNC	ENSG00000157060				12	0	0	4	6	60
FAM129A	0	genome.wustl.edu	37	1	184764591	184764591	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	184764591	184764591	G	A	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	silent	c.2307	p.S769	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842				350	0	0	208	139	40.0576
PAX7	0	genome.wustl.edu	37	1	19062247	19062247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	19062247	19062247	G	A	SNP	PAX7	ENST00000375375	human	ensembl	74_37	+1	known	missense	c.1277	p.R426Q	1.000	NULL	pfam_Paired_dom,pfam_Homeobox_dom,pfam_Pax7,superfamily_Homeodomain-like,smart_Paired_dom,smart_Homeobox_dom,prints_Paired_dom,pfscan_Homeobox_dom,pfscan_Paired_dom	-	no_errors	PAX7	HGNC	ENSG00000009709				130	0	0	67	47	41.2281
MIR4695	0	genome.wustl.edu	37	1	19209748	19209748	+	RNA	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	19209748	19209748	C	G	SNP	MIR4695	ENST00000577305	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR4695	HGNC	ENSG00000265606				66	0	0	41	24	36.9231
CDC73	0	genome.wustl.edu	37	1	193104571	193104571	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	193104571	193104571	C	T	SNP	CDC73	ENST00000367435	human	ensembl	74_37	+1	known	nonsense	c.358	p.R120*	0.999	NULL	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371				69	0	0	38	19	33.3333
EMC1	0	genome.wustl.edu	37	1	19565614	19565614	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	19565614	19565614	C	T	SNP	EMC1	ENST00000467423	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EMC1	HGNC	ENSG00000127463				14	0	0	7	5	41.6667
CACNA1S	0	genome.wustl.edu	37	1	201042762	201042762	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	201042762	201042762	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.2072	p.P691L	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				330	0	0	170	116	40.5594
CACNA1S	0	genome.wustl.edu	37	1	201047120	201047120	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	201047120	201047120	G	A	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	silent	c.1506	p.F502	0.982	pfam_Ion_trans_dom,prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				78	0	0	45	32	41.5584
CACNA1S	0	genome.wustl.edu	37	1	201063104	201063104	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	201063104	201063104	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.304	p.A102T	0.742	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248				80	0	0	38	24	38.7097
GPR37L1	0	genome.wustl.edu	37	1	202096944	202096944	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	202096944	202096944	C	A	SNP	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	missense	c.706	p.L236M	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075				71	0	0	75	5	6.25
PIK3C2B	0	genome.wustl.edu	37	1	204438269	204438269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	204438269	204438269	C	T	SNP	PIK3C2B	ENST00000367187	human	ensembl	74_37	-1	known	missense	c.662	p.R221H	0.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,pfam_Phox,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2B	HGNC	ENSG00000133056				459	0	0	282	164	36.7713
NFASC	0	genome.wustl.edu	37	1	204951100	204951100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	204951100	204951100	G	A	SNP	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	missense	c.2422	p.G808R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531				26	0	0	20	6	23.0769
PIGR	0	genome.wustl.edu	37	1	207109149	207109149	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	207109149	207109149	G	A	SNP	PIGR	ENST00000356495	human	ensembl	74_37	-1	known	missense	c.1060	p.R354C	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PIGR	HGNC	ENSG00000162896				26	0	0	17	8	32
CR1	0	genome.wustl.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	207787753	207787753	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	nonsense	c.6580	p.R2194*	0.477	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				40	0	0	48	6	11.1111
CAMK1G	0	genome.wustl.edu	37	1	209776581	209776581	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	209776581	209776581	A	G	SNP	CAMK1G	ENST00000009105	human	ensembl	74_37	+1	known	missense	c.244	p.T82A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMK1G	HGNC	ENSG00000008118				51	0	0	32	18	36
HP1BP3	0	genome.wustl.edu	37	1	21076290	21076290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	21076290	21076290	G	A	SNP	HP1BP3	ENST00000312239	human	ensembl	74_37	-1	known	missense	c.1067	p.P356L	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	-	no_errors	HP1BP3	HGNC	ENSG00000127483				105	0	0	79	41	34.1667
RCOR3	0	genome.wustl.edu	37	1	211486067	211486067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	211486067	211486067	C	T	SNP	RCOR3	ENST00000367005	human	ensembl	74_37	+1	known	missense	c.907	p.R303C	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb	pfam_SANT/Myb,pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	RCOR3	HGNC	ENSG00000117625				110	0	0	78	41	34.4538
EIF4G3	0	genome.wustl.edu	37	1	21191619	21191619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	21191619	21191619	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.2609	p.A870V	1.000	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151				96	0	0	69	48	41.0256
ATF3	0	genome.wustl.edu	37	1	212792490	212792490	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	212792490	212792490	G	A	SNP	ATF3	ENST00000465155	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATF3	HGNC	ENSG00000162772				50	0	0	14	14	50
FLVCR1	0	genome.wustl.edu	37	1	213032160	213032160	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	213032160	213032160	C	T	SNP	FLVCR1	ENST00000366971	human	ensembl	74_37	+1	known	silent	c.366	p.A122	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	FLVCR1	HGNC	ENSG00000162769				47	0	0	26	20	43.4783
CENPF	0	genome.wustl.edu	37	1	214828555	214828555	+	RNA	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	214828555	214828555	T	G	SNP	CENPF	ENST00000469862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.661	-	-	-	no_errors	CENPF	HGNC	ENSG00000117724				15	0	0	6	7	53.8462
RAP1GAP	0	genome.wustl.edu	37	1	21929366	21929366	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	21929366	21929366	G	A	SNP	RAP1GAP	ENST00000290101	human	ensembl	74_37	-1	known	missense	c.1661	p.S554L	1.000	NULL	pfam_Rap_GAP_dom,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP_dom	-	no_errors	RAP1GAP	HGNC	ENSG00000076864				79	0	0	26	20	43.4783
EPRS	0	genome.wustl.edu	37	1	220195819	220195819	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	220195819	220195819	C	T	SNP	EPRS	ENST00000366923	human	ensembl	74_37	-1	known	missense	c.985	p.G329R	1.000	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,tigrfam_Glu-tRNA-synth_arc/euk	pfam_Glu/Gln-tRNA-synth_Ib_cat-dom,pfam_WHEP-TRS,pfam_Glu/Gln-tRNA-synth_Ib_codon-bd,pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Pro-tRNA_ligase_II_C,pfam_Anticodon-bd,superfamily_Ribosomal_L25/Gln-tRNA_synth,superfamily_Anticodon-bd,superfamily_Pro-tRNA_synth_II,superfamily_S15_NS1_RNA-bd,superfamily_Glutathione-S-Trfase_C-like,smart_Pro-tRNA_ligase_II_C,prints_Glu/Gln-tRNA-synth,prints_Pro-tRNA-ligase_IIa,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_Pro-tRNA-ligase_IIa_arc-type,tigrfam_Glu-tRNA-synth_arc/euk	-	no_errors	EPRS	HGNC	ENSG00000136628				119	0	0	87	37	29.8387
IARS2	0	genome.wustl.edu	37	1	220313568	220313568	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	220313568	220313568	G	C	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	missense	c.2351	p.R784P	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Ile-tRNA-ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_Znf_DNA_glyclase/IsotRNA_synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Val/Leu/Ile-tRNA-synth_edit,prints_Ile-tRNA-ligase,tigrfam_Ile-tRNA-ligase	-	no_errors	IARS2	HGNC	ENSG00000067704				58	0	0	27	12	30.7692
DUSP10	0	genome.wustl.edu	37	1	221912920	221912920	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	221912920	221912920	G	A	SNP	DUSP10	ENST00000366899	human	ensembl	74_37	-1	known	missense	c.167	p.A56V	1.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_Blood-coag_inhib_Disintegrin,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP10	HGNC	ENSG00000143507				102	0	0	62	21	25.3012
HHIPL2	0	genome.wustl.edu	37	1	222713534	222713534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	222713534	222713534	C	T	SNP	HHIPL2	ENST00000343410	human	ensembl	74_37	-1	known	missense	c.1268	p.R423H	1.000	superfamily_Quinoprot_gluc/sorb_DH	pfam_Folate_rcpt-like,pfam_Glc/Sorbosone_DH,superfamily_Quinoprot_gluc/sorb_DH,superfamily_Saposin-like	-	no_errors	HHIPL2	HGNC	ENSG00000143512				99	0	0	70	6	7.89474
MIA3	0	genome.wustl.edu	37	1	222794552	222794552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	222794552	222794552	G	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	1.000	pfam_SH3_2,superfamily_SH3_domain	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305				46	0	0	45	21	31.8182
TLR5	0	genome.wustl.edu	37	1	223284234	223284234	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	223284234	223284234	G	C	SNP	TLR5	ENST00000342210	human	ensembl	74_37	-1	known	missense	c.2140	p.H714D	0.983	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR5	HGNC	ENSG00000187554				54	0	0	34	19	35.8491
SRP9	0	genome.wustl.edu	37	1	225971006	225971006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	225971006	225971006	G	A	SNP	SRP9	ENST00000304786	human	ensembl	74_37	+1	known	missense	c.77	p.R26H	1.000	superfamily_Signal_recog_particle_SRP9/14,pirsf_Signal_recog_particle_SRP9	superfamily_Signal_recog_particle_SRP9/14,pirsf_Signal_recog_particle_SRP9	-	no_errors	SRP9	HGNC	ENSG00000143742				52	0	0	28	32	53.3333
WNT3A	0	genome.wustl.edu	37	1	228210547	228210547	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	228210547	228210547	G	A	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	missense	c.251	p.R84H	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				59	0	0	37	19	33.9286
OBSCN	0	genome.wustl.edu	37	1	228407097	228407097	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	228407097	228407097	C	T	SNP	OBSCN	ENST00000570156	human	ensembl	74_37	+1	putative	missense	c.2726	p.T909M	0.776	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				34	0	0	15	7	31.8182
OBSCN	0	genome.wustl.edu	37	1	228481946	228481946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	228481946	228481946	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.11225	p.P3742L	0.997	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				165	0	0	91	64	41.2903
EPHA8	0	genome.wustl.edu	37	1	22925427	22925427	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	22925427	22925427	C	T	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	nonsense	c.2275	p.R759*	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886				34	0	0	25	11	30.5556
ACTA1	0	genome.wustl.edu	37	1	229568141	229568141	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	229568141	229568141	G	A	SNP	ACTA1	ENST00000366684	human	ensembl	74_37	-1	known	silent	c.492	p.N164	0.980	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTA1	HGNC	ENSG00000143632				56	0	0	34	16	32
NUP133	0	genome.wustl.edu	37	1	229599297	229599297	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	229599297	229599297	G	C	SNP	NUP133	ENST00000261396	human	ensembl	74_37	-1	known	missense	c.2678	p.A893G	1.000	pfam_Nucleoporin_Nup133/Nup155_C	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N	-	no_errors	NUP133	HGNC	ENSG00000069248				69	0	0	42	18	30
PGBD5	0	genome.wustl.edu	37	1	230486757	230486757	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	230486757	230486757	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	74_37	-1	known	missense	c.931	p.R311W	1.000	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614				101	0	0	61	28	31.4607
TARBP1	0	genome.wustl.edu	37	1	234527354	234527354	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	234527354	234527354	T	A	SNP	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	missense	c.4835	p.Q1612L	0.994	NULL	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				45	0	0	20	20	50
ASAP3	0	genome.wustl.edu	37	1	23782638	23782638	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	23782638	23782638	C	T	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	missense	c.179	p.R60Q	0.885	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280				56	0	0	24	24	50
FH	0	genome.wustl.edu	37	1	241672068	241672068	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	241672068	241672068	A	G	SNP	FH	ENST00000366560	human	ensembl	74_37	-1	known	silent	c.573	p.F191	0.844	pfam_Fumarate_lyase_N,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Fum_hydII	pfam_Fumarate_lyase_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase_fam,tigrfam_Fum_hydII	-	no_errors	FH	HGNC	ENSG00000091483				44	0	0	24	14	36.8421
IFNLR1	0	genome.wustl.edu	37	1	24485550	24485550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	24485550	24485550	G	A	SNP	IFNLR1	ENST00000327535	human	ensembl	74_37	-1	known	missense	c.793	p.R265W	0.000	NULL	superfamily_Fibronectin_type3	-	no_errors	IFNLR1	HGNC	ENSG00000185436				131	0	0	64	38	37.2549
ZNF496	0	genome.wustl.edu	37	1	247473056	247473056	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	247473056	247473056	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	silent	c.945	p.R315	0.000	pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				54	0	0	27	22	44.898
OR2T8	0	genome.wustl.edu	37	1	248084854	248084854	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	248084854	248084854	A	G	SNP	OR2T8	ENST00000319968	human	ensembl	74_37	+1	known	missense	c.535	p.T179A	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462				12	0	0	10	4	28.5714
OR2T33	0	genome.wustl.edu	37	1	248436550	248436550	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	248436550	248436550	G	T	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	missense	c.567	p.D189E	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212				57	0	0	56	12	17.6471
OR2T3	0	genome.wustl.edu	37	1	248636988	248636988	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	248636988	248636988	G	C	SNP	OR2T3	ENST00000359594	human	ensembl	74_37	+1	known	missense	c.337	p.A113P	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T3	HGNC	ENSG00000196539				87	0	0	45	28	38.3562
OR2T10	0	genome.wustl.edu	37	1	248756419	248756419	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	248756419	248756419	A	G	SNP	OR2T10	ENST00000330500	human	ensembl	74_37	-1	known	silent	c.651	p.S217	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T10	HGNC	ENSG00000184022				65	0	0	78	13	14.2857
MMEL1	0	genome.wustl.edu	37	1	2526797	2526797	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	2526797	2526797	G	A	SNP	MMEL1	ENST00000378412	human	ensembl	74_37	-1	known	missense	c.1502	p.A501V	1.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MMEL1	HGNC	ENSG00000142606				59	0	0	31	22	41.5094
AIM1L	0	genome.wustl.edu	37	1	26648679	26648679	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	26648679	26648679	C	T	SNP	AIM1L	ENST00000527815	human	ensembl	74_37	-1	known	missense	c.2251	p.E751K	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1L	HGNC	ENSG00000176092				228	1	0.436681	128	101	44.1048
ZNF683	0	genome.wustl.edu	37	1	26691260	26691260	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	26691260	26691260	G	A	SNP	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	silent	c.777	p.A259	0.002	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083				51	0	0	28	15	34.8837
ARID1A	0	genome.wustl.edu	37	1	27058097	27058097	+	Splice_Site	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	27058097	27058097	T	C	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	splice_site	c.1803+2	e3+2	1.000	-	-	-	no_errors	ARID1A	HGNC	ENSG00000117713				97	0	0	62	44	41.5094
SLC9A1	0	genome.wustl.edu	37	1	27428997	27428997	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	27428997	27428997	G	A	SNP	SLC9A1	ENST00000263980	human	ensembl	74_37	-1	known	missense	c.1699	p.R567C	1.000	tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020				173	0	0	83	64	43.5374
RCC1	0	genome.wustl.edu	37	1	28864477	28864477	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	28864477	28864477	C	T	SNP	RCC1	ENST00000373831	human	ensembl	74_37	+1	known	silent	c.1317	p.G439	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCC1	HGNC	ENSG00000180198				27	0	0	15	11	42.3077
PTPRU	0	genome.wustl.edu	37	1	29586063	29586063	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	29586063	29586063	G	A	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.662	p.R221H	0.089	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				59	0	0	22	15	40.5405
PTPRU	0	genome.wustl.edu	37	1	29644433	29644433	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	29644433	29644433	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	silent	c.3717	p.D1239	0.622	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656				32	0	0	22	11	33.3333
KPNA6	0	genome.wustl.edu	37	1	32628102	32628102	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	32628102	32628102	C	T	SNP	KPNA6	ENST00000545542	human	ensembl	74_37	+1	known	silent	c.903	p.C301	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA6	HGNC	ENSG00000025800				95	0	0	49	34	40.9639
TXLNA	0	genome.wustl.edu	37	1	32655736	32655736	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	32655736	32655736	C	T	SNP	TXLNA	ENST00000373609	human	ensembl	74_37	+1	known	silent	c.849	p.D283	1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNA	HGNC	ENSG00000084652				9	0	0	6	5	45.4545
TXLNA	0	genome.wustl.edu	37	1	32658000	32658000	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	32658000	32658000	C	T	SNP	TXLNA	ENST00000373609	human	ensembl	74_37	+1	known	missense	c.1052	p.A351V	0.998	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNA	HGNC	ENSG00000084652				70	0	0	30	23	43.3962
TSSK3	0	genome.wustl.edu	37	1	32829406	32829406	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	32829406	32829406	T	C	SNP	TSSK3	ENST00000373534	human	ensembl	74_37	+1	known	missense	c.356	p.V119A	0.976	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TSSK3	HGNC	ENSG00000162526				81	0	0	58	39	40.2062
KIAA1522	0	genome.wustl.edu	37	1	33236614	33236614	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	33236614	33236614	A	T	SNP	KIAA1522	ENST00000401073	human	ensembl	74_37	+1	known	nonsense	c.1834	p.K612*	1.000	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522				88	0	0	49	39	44.3182
ADC	0	genome.wustl.edu	37	1	33563625	33563625	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	33563625	33563625	C	T	SNP	ADC	ENST00000373441	human	ensembl	74_37	+1	known	missense	c.934	p.H312Y	0.021	superfamily_Ala_racemase/Decarboxylase_C	pfam_De-COase2_N,pfam_De-COase2_C,superfamily_Ala_racemase/Decarboxylase_C,prints_Orn_de-COase,prints_Orn/DAP/Arg_de-COase	-	no_errors	ADC	HGNC	ENSG00000142920				17	0	0	10	10	50
MEGF6	0	genome.wustl.edu	37	1	3410411	3410411	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	3410411	3410411	G	A	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.4311	p.D1437	0.000	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				12	0	0	5	3	37.5
AGO1	0	genome.wustl.edu	37	1	36384666	36384666	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36384666	36384666	G	A	SNP	AGO1	ENST00000373204	human	ensembl	74_37	+1	known	missense	c.2276	p.R759Q	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO1	HGNC	ENSG00000092847				45	0	0	19	15	44.1176
MAP7D1	0	genome.wustl.edu	37	1	36636750	36636750	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36636750	36636750	C	T	SNP	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	silent	c.225	p.V75	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				103	0	0	37	30	44.7761
SH3D21	0	genome.wustl.edu	37	1	36785787	36785787	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36785787	36785787	C	T	SNP	SH3D21	ENST00000453908	human	ensembl	74_37	+1	known	missense	c.1523	p.S508L	0.001	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox,prints_Spectrin_alpha_SH3	-	no_errors	SH3D21	HGNC	ENSG00000214193				71	0	0	36	28	43.75
MRPS15	0	genome.wustl.edu	37	1	36921447	36921447	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36921447	36921447	C	T	SNP	MRPS15	ENST00000373116	human	ensembl	74_37	-1	known	missense	c.716	p.R239Q	0.000	NULL	pfam_Ribosomal_S15,superfamily_S15_NS1_RNA-bd	-	no_errors	MRPS15	HGNC	ENSG00000116898				144	0	0	72	56	43.75
CSF3R	0	genome.wustl.edu	37	1	36934824	36934824	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36934824	36934824	G	A	SNP	CSF3R	ENST00000373103	human	ensembl	74_37	-1	known	silent	c.1509	p.I503	0.120	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_IgC2-like_lig-bd,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CSF3R	HGNC	ENSG00000119535				65	0	0	25	21	45.6522
EPHA10	0	genome.wustl.edu	37	1	38227453	38227453	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	38227453	38227453	G	A	SNP	EPHA10	ENST00000427468	human	ensembl	74_37	-1	known	silent	c.474	p.D158	0.877	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA10	HGNC	ENSG00000183317				64	0	0	37	28	43.0769
MTF1	0	genome.wustl.edu	37	1	38288281	38288281	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	38288281	38288281	G	T	SNP	MTF1	ENST00000373036	human	ensembl	74_37	-1	known	missense	c.1279	p.L427I	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MTF1	HGNC	ENSG00000188786				73	0	0	38	26	40.625
POU3F1	0	genome.wustl.edu	37	1	38512179	38512179	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	38512179	38512179	G	T	SNP	POU3F1	ENST00000373012	human	ensembl	74_37	-1	known	silent	c.237	p.G79	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F1	HGNC	ENSG00000185668				9	0	0	3	4	57.1429
PPT1	0	genome.wustl.edu	37	1	40546109	40546109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	40546109	40546109	C	T	SNP	PPT1	ENST00000433473	human	ensembl	74_37	-1	known	missense	c.587	p.R196H	1.000	pfam_Palm_thioest,prints_Palm_thioest	pfam_Palm_thioest,prints_Palm_thioest	-	no_errors	PPT1	HGNC	ENSG00000131238				267	0	0	153	89	36.7769
HIVEP3	0	genome.wustl.edu	37	1	42047178	42047178	+	Silent	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	42047178	42047178	T	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	silent	c.3291	p.G1097	0.014	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124				74	0	0	55	7	11.2903
ELOVL1	0	genome.wustl.edu	37	1	43831048	43831048	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	43831048	43831048	C	T	SNP	ELOVL1	ENST00000372458	human	ensembl	74_37	-1	known	splice_site	c.47-1	e2-1	1.000	-	-	-	no_errors	ELOVL1	HGNC	ENSG00000066322				19	0	0	6	11	64.7059
ST3GAL3	0	genome.wustl.edu	37	1	44202014	44202014	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	44202014	44202014	G	A	SNP	ST3GAL3	ENST00000262915	human	ensembl	74_37	+1	known	silent	c.81	p.A27	0.406	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL3	HGNC	ENSG00000126091				108	0	0	65	60	48
KIF2C	0	genome.wustl.edu	37	1	45226082	45226082	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	45226082	45226082	G	A	SNP	KIF2C	ENST00000372224	human	ensembl	74_37	+1	known	missense	c.1498	p.A500T	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2C	HGNC	ENSG00000142945				57	0	0	20	20	50
MKNK1	0	genome.wustl.edu	37	1	47024370	47024370	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	47024370	47024370	C	A	SNP	MKNK1	ENST00000371946	human	ensembl	74_37	-1	known	missense	c.1275	p.E425D	0.956	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277				69	0	0	44	31	41.3333
MOB3C	0	genome.wustl.edu	37	1	47078650	47078650	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	47078650	47078650	G	A	SNP	MOB3C	ENST00000271139	human	ensembl	74_37	-1	known	missense	c.500	p.P167L	0.974	pfam_Mob1_phocein,superfamily_Mob1_phocein	pfam_Mob1_phocein,superfamily_Mob1_phocein	-	no_errors	MOB3C	HGNC	ENSG00000142961				55	0	0	32	22	40.7407
TAL1	0	genome.wustl.edu	37	1	47685538	47685538	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	47685538	47685538	C	T	SNP	TAL1	ENST00000371883	human	ensembl	74_37	-1	known	missense	c.856	p.V286M	0.998	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TAL1	HGNC	ENSG00000162367				66	0	0	44	20	31.25
AJAP1	0	genome.wustl.edu	37	1	4829964	4829964	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	4829964	4829964	T	C	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	missense	c.881	p.I294T	1.000	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581				205	0	0	114	63	35.5932
SSBP3	0	genome.wustl.edu	37	1	54694479	54694479	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	54694479	54694479	C	T	SNP	SSBP3	ENST00000371320	human	ensembl	74_37	-1	known	silent	c.948	p.S316	0.099	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd	-	no_errors	SSBP3	HGNC	ENSG00000157216				29	0	0	14	7	33.3333
PCSK9	0	genome.wustl.edu	37	1	55524222	55524222	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	55524222	55524222	C	T	SNP	PCSK9	ENST00000302118	human	ensembl	74_37	+1	known	missense	c.1405	p.R469W	0.000	NULL	pfam_Peptidase_S8/S53_dom,pfam_Inhibitor_I9,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK9	HGNC	ENSG00000169174				76	0	0	46	18	28.125
PRKAA2	0	genome.wustl.edu	37	1	57169680	57169680	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	57169680	57169680	C	T	SNP	PRKAA2	ENST00000371244	human	ensembl	74_37	+1	known	silent	c.825	p.Y275	0.997	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKAA2	HGNC	ENSG00000162409				162	0	0	101	63	38.4146
C1orf168	0	genome.wustl.edu	37	1	57258264	57258264	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	57258264	57258264	A	G	SNP	C1orf168	ENST00000343433	human	ensembl	74_37	-1	known	silent	c.222	p.L74	0.000	NULL	superfamily_SH3_domain	-	no_errors	C1orf168	HGNC	ENSG00000187889				142	1	0.699301	75	54	41.8605
DAB1	0	genome.wustl.edu	37	1	57480759	57480759	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	57480759	57480759	G	A	SNP	DAB1	ENST00000371231	human	ensembl	74_37	-1	known	missense	c.1340	p.T447M	1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	DAB1	HGNC	ENSG00000173406				82	0	0	51	17	25
C1orf87	0	genome.wustl.edu	37	1	60491137	60491137	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	60491137	60491137	G	A	SNP	C1orf87	ENST00000371201	human	ensembl	74_37	-1	known	silent	c.1063	p.L355	0.003	NULL	NULL	-	no_errors	C1orf87	HGNC	ENSG00000162598				78	0	0	52	33	38.8235
CHD5	0	genome.wustl.edu	37	1	6209392	6209392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6209392	6209392	C	T	SNP	CHD5	ENST00000262450	human	ensembl	74_37	-1	known	missense	c.1075	p.D359N	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254				34	0	0	37	17	31.4815
DOCK7	0	genome.wustl.edu	37	1	62961311	62961311	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	62961311	62961311	A	T	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.4938	p.D1646E	0.999	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				52	0	0	41	14	25.4545
ALG6	0	genome.wustl.edu	37	1	63876980	63876980	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	63876980	63876980	A	T	SNP	ALG6	ENST00000371108	human	ensembl	74_37	+1	known	nonsense	c.658	p.K220*	1.000	pfam_Glyco_trans_ALG6/ALG8	pfam_Glyco_trans_ALG6/ALG8	-	no_errors	ALG6	HGNC	ENSG00000088035				61	0	0	36	22	37.931
EFCAB7	0	genome.wustl.edu	37	1	64027499	64027499	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	64027499	64027499	G	T	SNP	EFCAB7	ENST00000371088	human	ensembl	74_37	+1	known	missense	c.1468	p.G490C	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB7	HGNC	ENSG00000203965				30	0	0	26	15	36.5854
TNFRSF25	0	genome.wustl.edu	37	1	6521693	6521693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6521693	6521693	C	T	SNP	TNFRSF25	ENST00000377782	human	ensembl	74_37	-1	known	missense	c.1082	p.R361H	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_25,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF25	HGNC	ENSG00000215788				26	0	0	17	11	39.2857
TNFRSF25	0	genome.wustl.edu	37	1	6525249	6525249	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6525249	6525249	C	T	SNP	TNFRSF25	ENST00000377782	human	ensembl	74_37	-1	known	missense	c.194	p.C65Y	0.097	smart_TNFR/NGFR_Cys_rich_reg	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,prints_TNFR_25,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF25	HGNC	ENSG00000215788				30	0	0	17	13	43.3333
KLHL21	0	genome.wustl.edu	37	1	6659214	6659214	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6659214	6659214	G	A	SNP	KLHL21	ENST00000377658	human	ensembl	74_37	-1	known	silent	c.1320	p.C440	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL21	HGNC	ENSG00000162413				39	0	0	28	15	34.8837
IL12RB2	0	genome.wustl.edu	37	1	67861595	67861595	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	67861595	67861595	C	T	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	silent	c.2412	p.N804	0.036	NULL	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985				244	0	0	146	98	40.1639
LRRIQ3	0	genome.wustl.edu	37	1	74649219	74649219	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	74649219	74649219	G	A	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	silent	c.150	p.I50	0.997	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620				28	0	0	23	14	37.8378
ST6GALNAC3	0	genome.wustl.edu	37	1	76779524	76779524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	76779524	76779524	C	T	SNP	ST6GALNAC3	ENST00000328299	human	ensembl	74_37	+1	known	missense	c.53	p.A18V	0.958	NULL	pfam_Glyco_trans_29	-	no_errors	ST6GALNAC3	HGNC	ENSG00000184005				107	0	0	47	25	34.7222
PER3	0	genome.wustl.edu	37	1	7887206	7887206	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	7887206	7887206	G	A	SNP	PER3	ENST00000361923	human	ensembl	74_37	+1	known	silent	c.2193	p.S731	0.000	NULL	pfam_Period_circadian-like_C,pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,smart_PAS,pfscan_PAS	-	no_errors	PER3	HGNC	ENSG00000049246				45	0	0	16	21	56.7568
IFI44L	0	genome.wustl.edu	37	1	79102859	79102859	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	79102859	79102859	A	G	SNP	IFI44L	ENST00000370751	human	ensembl	74_37	+1	known	missense	c.1019	p.K340R	0.002	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	IFI44L	HGNC	ENSG00000137959				57	0	0	38	25	39.6825
SLC45A1	0	genome.wustl.edu	37	1	8390709	8390709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	8390709	8390709	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	missense	c.1258	p.D420N	0.039	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				57	0	0	33	16	32.6531
PRKACB	0	genome.wustl.edu	37	1	84639014	84639014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	84639014	84639014	C	T	SNP	PRKACB	ENST00000394838	human	ensembl	74_37	+1	known	missense	c.13	p.R5C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875				11	0	0	5	3	37.5
SLC2A7	0	genome.wustl.edu	37	1	9075181	9075181	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	9075181	9075181	C	T	SNP	SLC2A7	ENST00000400906	human	ensembl	74_37	-1	known	missense	c.710	p.R237Q	0.002	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A7	HGNC	ENSG00000197241				22	0	0	11	10	47.619
TGFBR3	0	genome.wustl.edu	37	1	92178028	92178028	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	92178028	92178028	G	A	SNP	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	silent	c.1938	p.N646	1.000	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702				81	0	0	56	39	41.0526
EVI5	0	genome.wustl.edu	37	1	93202119	93202119	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	93202119	93202119	C	T	SNP	EVI5	ENST00000543509	human	ensembl	74_37	-1	known	silent	c.117	p.S39	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5	HGNC	ENSG00000067208				165	0	0	94	54	36.4865
MTF2	0	genome.wustl.edu	37	1	93599728	93599728	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	93599728	93599728	C	A	SNP	MTF2	ENST00000370298	human	ensembl	74_37	+1	known	nonsense	c.1400	p.S467*	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	MTF2	HGNC	ENSG00000143033				69	0	0	36	30	45.4545
CNNM1	0	genome.wustl.edu	37	10	101120624	101120624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	101120624	101120624	C	T	SNP	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	missense	c.1750	p.R584W	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				237	1	0.420168	124	48	27.907
NKX2-3	0	genome.wustl.edu	37	10	101295035	101295035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	101295035	101295035	G	A	SNP	NKX2-3	ENST00000344586	human	ensembl	74_37	+1	known	missense	c.652	p.A218T	0.991	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-3	HGNC	ENSG00000119919				13	0	0	12	8	40
ENTPD7	0	genome.wustl.edu	37	10	101464363	101464363	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	101464363	101464363	A	G	SNP	ENTPD7	ENST00000370489	human	ensembl	74_37	+1	known	missense	c.1738	p.T580A	0.934	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD7	HGNC	ENSG00000198018				43	0	0	32	15	31.9149
FGF8	0	genome.wustl.edu	37	10	103531218	103531218	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	103531218	103531218	A	G	SNP	FGF8	ENST00000320185	human	ensembl	74_37	-1	known	splice_site	c.444+2	e5+2	1.000	-	-	-	no_errors	FGF8	HGNC	ENSG00000107831				53	0	0	38	21	35.5932
PITX3	0	genome.wustl.edu	37	10	103991469	103991469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	103991469	103991469	C	T	SNP	PITX3	ENST00000370002	human	ensembl	74_37	-1	known	missense	c.197	p.R66H	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Pitx/unc30,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	PITX3	HGNC	ENSG00000107859				16	0	0	9	10	52.6316
GBF1	0	genome.wustl.edu	37	10	104128195	104128195	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	104128195	104128195	G	A	SNP	GBF1	ENST00000369983	human	ensembl	74_37	+1	known	missense	c.2860	p.A954T	1.000	NULL	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	GBF1	HGNC	ENSG00000107862				93	0	0	41	24	36.9231
PDCD11	0	genome.wustl.edu	37	10	105162907	105162907	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	105162907	105162907	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	silent	c.267	p.C89	0.999	superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				148	1	0.671141	109	65	37.3563
PDCD11	0	genome.wustl.edu	37	10	105185248	105185248	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	105185248	105185248	C	T	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	nonsense	c.3271	p.R1091*	1.000	pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				60	0	0	42	18	30
PDCD11	0	genome.wustl.edu	37	10	105200090	105200090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	105200090	105200090	G	A	SNP	PDCD11	ENST00000369797	human	ensembl	74_37	+1	known	missense	c.4192	p.G1398R	0.000	NULL	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_Suf,superfamily_NA-bd_OB-fold,smart_RNA-binding_domain_S1,smart_HAT,pfscan_TPR-contain_dom,pfscan_Rbsml_prot_S1_RNA-bd_dom,prints_Ribosomal_S1	-	no_errors	PDCD11	HGNC	ENSG00000148843				133	0	0	96	48	33.3333
SH3PXD2A	0	genome.wustl.edu	37	10	105372688	105372688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	105372688	105372688	C	T	SNP	SH3PXD2A	ENST00000369774	human	ensembl	74_37	-1	known	missense	c.1180	p.V394I	0.001	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2A	HGNC	ENSG00000107957				61	0	0	28	16	36.3636
TCF7L2	0	genome.wustl.edu	37	10	114912186	114912186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	114912186	114912186	C	T	SNP	TCF7L2	ENST00000355995	human	ensembl	74_37	+1	known	missense	c.1256	p.A419V	1.000	superfamily_HMG_box_dom,smart_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L2	HGNC	ENSG00000148737				150	0	0	105	57	35.1852
USP6NL	0	genome.wustl.edu	37	10	11504898	11504898	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	11504898	11504898	C	T	SNP	USP6NL	ENST00000379237	human	ensembl	74_37	-1	known	missense	c.2098	p.V700I	0.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	USP6NL	HGNC	ENSG00000148429				23	0	0	20	8	28.5714
AFAP1L2	0	genome.wustl.edu	37	10	116082999	116082999	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	116082999	116082999	C	G	SNP	AFAP1L2	ENST00000545353	human	ensembl	74_37	-1	known	missense	c.496	p.A166P	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129				16	0	0	5	4	44.4444
ECHDC3	0	genome.wustl.edu	37	10	11805348	11805348	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	11805348	11805348	G	A	SNP	ECHDC3	ENST00000379215	human	ensembl	74_37	+1	known	silent	c.717	p.K239	1.000	NULL	pfam_Crotonase_core_superfam	-	no_errors	ECHDC3	HGNC	ENSG00000134463				71	0	0	36	24	40
VAX1	0	genome.wustl.edu	37	10	118896129	118896129	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	118896129	118896129	G	T	SNP	VAX1	ENST00000369206	human	ensembl	74_37	-1	known	missense	c.283	p.L95M	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	VAX1	HGNC	ENSG00000148704				80	0	0	50	6	10.7143
INPP5F	0	genome.wustl.edu	37	10	121582587	121582587	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	121582587	121582587	T	C	SNP	INPP5F	ENST00000361976	human	ensembl	74_37	+1	known	silent	c.2037	p.P679	0.987	pfam_Inositol_phosphatase	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825				69	0	0	59	28	32.1839
WDR11	0	genome.wustl.edu	37	10	122645359	122645359	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	122645359	122645359	A	G	SNP	WDR11	ENST00000263461	human	ensembl	74_37	+1	known	missense	c.1882	p.R628G	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR11	HGNC	ENSG00000120008				107	0	0	60	36	37.5
C10orf88	0	genome.wustl.edu	37	10	124713679	124713679	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	124713679	124713679	C	A	SNP	C10orf88	ENST00000481909	human	ensembl	74_37	-1	known	nonsense	c.16	p.E6*	0.004	NULL	NULL	-	no_errors	C10orf88	HGNC	ENSG00000119965				8	0	0	12	2	14.2857
CTBP2	0	genome.wustl.edu	37	10	126727587	126727587	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	126727587	126727587	G	A	SNP	CTBP2	ENST00000337195	human	ensembl	74_37	-1	known	nonsense	c.37	p.R13*	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029				95	0	0	58	36	38.2979
C10orf137	0	genome.wustl.edu	37	10	127438079	127438079	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	127438079	127438079	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	silent	c.3222	p.C1074	0.998	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938				67	0	0	52	26	33.3333
DOCK1	0	genome.wustl.edu	37	10	128851058	128851058	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	128851058	128851058	G	A	SNP	DOCK1	ENST00000280333	human	ensembl	74_37	+1	known	missense	c.2252	p.R751H	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,superfamily_Cyt_c-like_dom,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK1	HGNC	ENSG00000150760				15	0	0	12	8	40
MKI67	0	genome.wustl.edu	37	10	129902379	129902379	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	129902379	129902379	T	C	SNP	MKI67	ENST00000368654	human	ensembl	74_37	-1	known	silent	c.7725	p.S2575	0.000	NULL	pfam_K167R,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MKI67	HGNC	ENSG00000148773				121	0	0	75	58	43.609
EBF3	0	genome.wustl.edu	37	10	131641447	131641447	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	131641447	131641447	G	A	SNP	EBF3	ENST00000355311	human	ensembl	74_37	-1	known	missense	c.1148	p.A383V	1.000	NULL	pfam_IPT,superfamily_Ig_E-set,smart_IPT	-	no_errors	EBF3	HGNC	ENSG00000108001				21	0	0	19	4	17.3913
SEPHS1	0	genome.wustl.edu	37	10	13364896	13364896	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	13364896	13364896	C	T	SNP	SEPHS1	ENST00000327347	human	ensembl	74_37	-1	known	silent	c.903	p.A301	0.495	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,pirsf_SelD,tigrfam_SelD	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,pirsf_SelD,tigrfam_SelD	-	no_errors	SEPHS1	HGNC	ENSG00000086475				50	0	0	23	16	41.0256
GPR123	0	genome.wustl.edu	37	10	134942560	134942560	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	134942560	134942560	G	A	SNP	GPR123	ENST00000607359	human	ensembl	74_37	+1	putative	missense	c.3385	p.D1129N	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	-	no_errors	GPR123	HGNC	ENSG00000197177				11	0	0	1	3	75
C1QL3	0	genome.wustl.edu	37	10	16562696	16562696	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	16562696	16562696	C	T	SNP	C1QL3	ENST00000298943	human	ensembl	74_37	-1	known	silent	c.369	p.T123	0.991	smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QL3	HGNC	ENSG00000165985				81	0	0	46	25	35.2113
SKIDA1	0	genome.wustl.edu	37	10	21804329	21804329	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	21804329	21804329	C	T	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	missense	c.2423	p.R808H	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592				112	0	0	69	54	43.9024
MYO3A	0	genome.wustl.edu	37	10	26305796	26305796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	26305796	26305796	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.556	p.V186I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				88	0	0	52	23	30.6667
MYO3A	0	genome.wustl.edu	37	10	26446278	26446278	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	26446278	26446278	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	nonsense	c.2833	p.Q945*	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				72	0	0	51	32	38.5542
GAD2	0	genome.wustl.edu	37	10	26570016	26570016	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	26570016	26570016	G	T	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	missense	c.1236	p.E412D	1.000	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750				96	0	0	43	26	37.6812
PTCHD3	0	genome.wustl.edu	37	10	27702415	27702415	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	27702415	27702415	G	A	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	silent	c.765	p.C255	0.983	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				57	0	0	20	27	57.4468
KIAA1462	0	genome.wustl.edu	37	10	30315305	30315305	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	30315305	30315305	G	A	SNP	KIAA1462	ENST00000375377	human	ensembl	74_37	-1	known	missense	c.3772	p.R1258C	1.000	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757				108	0	0	51	14	21.5385
ZNF438	0	genome.wustl.edu	37	10	31137669	31137669	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	31137669	31137669	T	C	SNP	ZNF438	ENST00000361310	human	ensembl	74_37	-1	known	silent	c.1665	p.K555	0.897	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF438	HGNC	ENSG00000183621				230	0	0	134	85	38.8128
CCDC7	0	genome.wustl.edu	37	10	32740786	32740786	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	32740786	32740786	T	C	SNP	CCDC7	ENST00000277657	human	ensembl	74_37	+1	known	silent	c.216	p.S72	0.016	NULL	NULL	-	no_errors	CCDC7	HGNC	ENSG00000216937				39	0	0	32	17	34.6939
CCDC7	0	genome.wustl.edu	37	10	32833336	32833336	+	RNA	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	32833336	32833336	G	C	SNP	CCDC7	ENST00000471905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CCDC7	HGNC	ENSG00000216937				19	0	0	16	7	30.4348
FZD8	0	genome.wustl.edu	37	10	35929087	35929087	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	35929087	35929087	G	A	SNP	FZD8	ENST00000374694	human	ensembl	74_37	-1	known	missense	c.1271	p.A424V	1.000	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD8	HGNC	ENSG00000177283				29	0	0	23	12	34.2857
DIP2C	0	genome.wustl.edu	37	10	372999	372999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	372999	372999	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	74_37	-1	known	missense	c.3871	p.R1291W	0.848	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240				66	0	0	34	21	38.1818
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				65	0	0	46	7	13.2075
ENSG00000237389	0	genome.wustl.edu	37	10	44126808	44126808	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	44126808	44126808	G	A	SNP	ENSG00000237389	ENST00000431956	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.864	-	-	-	no_errors	RP11-402L1.4	Clone_based_vega_gene	ENSG00000237389				10	0	0	6	6	50
NPY4R	0	genome.wustl.edu	37	10	47087071	47087071	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	47087071	47087071	G	A	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	silent	c.288	p.P96	0.025	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174				206	0	0	159	23	12.6374
AGAP7	0	genome.wustl.edu	37	10	51464747	51464747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	51464747	51464747	C	T	SNP	AGAP7	ENST00000374095	human	ensembl	74_37	-1	known	missense	c.1709	p.R570Q	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP7	HGNC	ENSG00000204169				27	0	0	15	13	46.4286
AGAP6	0	genome.wustl.edu	37	10	51754188	51754188	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	51754188	51754188	A	G	SNP	AGAP6	ENST00000374056	human	ensembl	74_37	+1	known	missense	c.326	p.H109R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	AGAP6	HGNC	ENSG00000204149				58	0	0	89	9	9.18367
PRKG1	0	genome.wustl.edu	37	10	53667314	53667314	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	53667314	53667314	C	T	SNP	PRKG1	ENST00000373980	human	ensembl	74_37	+1	known	missense	c.746	p.A249V	1.000	pirsf_cGMP-dependent_protein_kinase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_cGMP_dep_kinase,pfscan_cNMP-bd_dom	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532				107	0	0	72	41	36.2832
PCDH15	0	genome.wustl.edu	37	10	56077099	56077099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	56077099	56077099	G	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.808	p.L270F	0.926	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275				97	0	0	69	40	36.6972
FAM208B	0	genome.wustl.edu	37	10	5762725	5762725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	5762725	5762725	C	T	SNP	FAM208B	ENST00000328090	human	ensembl	74_37	+1	known	missense	c.34	p.R12C	0.000	NULL	pfam_DUF3715,pfam_DUF3699	-	no_errors	FAM208B	HGNC	ENSG00000108021				25	0	0	15	10	40
RTKN2	0	genome.wustl.edu	37	10	63959571	63959571	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	63959571	63959571	T	C	SNP	RTKN2	ENST00000373789	human	ensembl	74_37	-1	known	silent	c.1236	p.S412	1.000	NULL	pfam_Pleckstrin_homology,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN2	HGNC	ENSG00000182010				90	0	0	55	21	27.6316
JMJD1C	0	genome.wustl.edu	37	10	64967560	64967560	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	64967560	64967560	T	C	SNP	JMJD1C	ENST00000399262	human	ensembl	74_37	-1	known	missense	c.3869	p.H1290R	0.885	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	JMJD1C	HGNC	ENSG00000171988				149	0	0	94	44	31.8841
PRKCQ	0	genome.wustl.edu	37	10	6533724	6533724	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	6533724	6533724	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	silent	c.711	p.Y237	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				93	0	0	76	37	32.7434
H2AFY2	0	genome.wustl.edu	37	10	71835526	71835526	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	71835526	71835526	A	G	SNP	H2AFY2	ENST00000373255	human	ensembl	74_37	+1	known	missense	c.112	p.K38E	1.000	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,pirsf_Core_histone_macro-H2A	pfam_Macro_dom,pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H2A,smart_Macro_dom,pirsf_Core_histone_macro-H2A,pfscan_Macro_dom,prints_Histone_H2A	-	no_errors	H2AFY2	HGNC	ENSG00000099284				47	0	0	30	17	36.1702
ADAMTS14	0	genome.wustl.edu	37	10	72495033	72495033	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	72495033	72495033	C	T	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	silent	c.1470	p.G490	0.991	smart_ADAM_Cys-rich	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				72	0	0	27	15	35.7143
UNC5B	0	genome.wustl.edu	37	10	73058904	73058904	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	73058904	73058904	C	T	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.2708	p.T903M	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				231	0	0	134	84	38.5321
PSAP	0	genome.wustl.edu	37	10	73594249	73594249	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	73594249	73594249	C	T	SNP	PSAP	ENST00000394934	human	ensembl	74_37	-1	known	silent	c.54	p.P18	0.004	pirsf_Saposin_chordata,prints_Saposin,pfscan_SapA	pirsf_Saposin_chordata,pfam_SapB_1,pfam_SapB_2,pfam_SapA,superfamily_Saposin-like,smart_SapA,smart_SaposinB,prints_Saposin,pfscan_SapA,pfscan_SaposinB	-	no_errors	PSAP	HGNC	ENSG00000197746				27	0	0	20	4	16.6667
PPP3CB	0	genome.wustl.edu	37	10	75238307	75238307	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	75238307	75238307	G	A	SNP	PPP3CB	ENST00000394829	human	ensembl	74_37	-1	known	nonsense	c.361	p.R121*	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CB	HGNC	ENSG00000107758				61	0	0	39	32	45.0704
KAT6B	0	genome.wustl.edu	37	10	76789460	76789460	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	76789460	76789460	C	T	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	silent	c.4878	p.Y1626	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				114	1	0.869565	55	53	49.0741
ZNF503	0	genome.wustl.edu	37	10	77158594	77158594	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	77158594	77158594	C	T	SNP	ZNF503	ENST00000372524	human	ensembl	74_37	-1	known	silent	c.1854	p.P618	0.770	NULL	pfam_Tscrpt_rep_NocA-like,pfscan_Znf_C2H2	-	no_errors	ZNF503	HGNC	ENSG00000165655				18	0	0	8	5	38.4615
DLG5	0	genome.wustl.edu	37	10	79553804	79553804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	79553804	79553804	G	A	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.5618	p.A1873V	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208				183	0	0	144	10	6.49351
TAF3	0	genome.wustl.edu	37	10	8006080	8006080	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	8006080	8006080	G	A	SNP	TAF3	ENST00000344293	human	ensembl	74_37	+1	known	missense	c.607	p.D203N	0.997	NULL	pfam_BTP,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_Histone-fold,smart_BTP,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	TAF3	HGNC	ENSG00000165632				80	0	0	49	44	47.3118
ZMIZ1	0	genome.wustl.edu	37	10	81053363	81053363	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	81053363	81053363	C	G	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.1183	p.P395A	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				134	0	0	70	48	40.678
SFTPD	0	genome.wustl.edu	37	10	81701716	81701716	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	81701716	81701716	C	T	SNP	SFTPD	ENST00000372292	human	ensembl	74_37	-1	known	missense	c.544	p.A182T	0.975	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,pfam_Surfac_D-trimer,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	SFTPD	HGNC	ENSG00000133661				118	0	0	61	40	39.604
SH2D4B	0	genome.wustl.edu	37	10	82403841	82403841	+	Nonstop_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	82403841	82403841	A	T	SNP	SH2D4B	ENST00000470604	human	ensembl	74_37	+1	known	nonstop	c.1296	p.*432Y	0.993	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217				36	0	0	25	16	39.0244
CCSER2	0	genome.wustl.edu	37	10	86132007	86132007	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	86132007	86132007	C	T	SNP	CCSER2	ENST00000372088	human	ensembl	74_37	+1	known	missense	c.1199	p.S400L	0.991	NULL	NULL	-	no_errors	CCSER2	HGNC	ENSG00000107771				45	0	0	32	22	40.7407
BMPR1A	0	genome.wustl.edu	37	10	88676973	88676973	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	88676973	88676973	G	A	SNP	BMPR1A	ENST00000372037	human	ensembl	74_37	+1	known	nonsense	c.758	p.W253*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMPR1A	HGNC	ENSG00000107779				48	0	0	29	28	49.1228
ENSG00000271880	0	genome.wustl.edu	37	10	88768527	88768527	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	88768527	88768527	G	A	SNP	ENSG00000271880	ENST00000433214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.489	-	-	-	no_errors	RP11-96C23.5	Clone_based_vega_gene	ENSG00000271880				203	0	0	124	42	25.3012
CYP26A1	0	genome.wustl.edu	37	10	94834693	94834693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	94834693	94834693	G	A	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	missense	c.572	p.R191H	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596				83	0	0	42	31	42.4658
FFAR4	0	genome.wustl.edu	37	10	95326941	95326941	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	95326941	95326941	G	A	SNP	FFAR4	ENST00000371483	human	ensembl	74_37	+1	known	missense	c.464	p.R155Q	0.368	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	FFAR4	HGNC	ENSG00000186188				14	0	0	14	14	50
SORBS1	0	genome.wustl.edu	37	10	97117446	97117446	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	97117446	97117446	G	A	SNP	SORBS1	ENST00000607232	human	ensembl	74_37	-1	known	silent	c.1371	p.D457	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637				71	0	0	49	25	33.7838
ALDH18A1	0	genome.wustl.edu	37	10	97371130	97371130	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	97371130	97371130	G	A	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	nonsense	c.1993	p.R665*	1.000	superfamily_Ald_DH/histidinol_DH,pirsf_P5_carboxy_syn,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573				262	0	0	134	97	41.9913
PIK3AP1	0	genome.wustl.edu	37	10	98469322	98469322	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	98469322	98469322	A	G	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	splice_site	c.430+2	e2+2	1.000	-	-	-	no_errors	PIK3AP1	HGNC	ENSG00000155629				119	0	0	110	6	5.17241
RRP12	0	genome.wustl.edu	37	10	99139503	99139503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	99139503	99139503	G	A	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.1558	p.R520C	1.000	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				46	0	0	25	17	40.4762
SFRP5	0	genome.wustl.edu	37	10	99531377	99531377	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	99531377	99531377	G	A	SNP	SFRP5	ENST00000266066	human	ensembl	74_37	-1	known	missense	c.214	p.R72W	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP5	HGNC	ENSG00000120057				37	0	0	24	16	40
CRTAC1	0	genome.wustl.edu	37	10	99625397	99625397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	99625397	99625397	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.1894	p.A632T	0.839	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				25	0	0	11	10	47.619
PGR	0	genome.wustl.edu	37	11	100933308	100933308	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	100933308	100933308	A	G	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.2082	p.I694	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				233	0	0	142	93	39.5745
PGR	0	genome.wustl.edu	37	11	100998809	100998809	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	100998809	100998809	G	A	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	silent	c.993	p.G331	0.014	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				36	0	0	20	23	53.4884
PGR	0	genome.wustl.edu	37	11	100999101	100999101	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	100999101	100999101	C	A	SNP	PGR	ENST00000325455	human	ensembl	74_37	-1	known	missense	c.701	p.G234V	0.000	pfam_Progest_rcpt	pfam_Progest_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Progest_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	PGR	HGNC	ENSG00000082175				24	0	0	17	4	19.0476
MUC6	0	genome.wustl.edu	37	11	1013590	1013590	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	1013590	1013590	A	G	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.7186	p.C2396R	0.994	smart_Cys_knot_C,pfscan_Cys_knot_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956				8	0	0	2	3	60
MUC2	0	genome.wustl.edu	37	11	1084335	1084335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	1084335	1084335	G	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.2467	p.V823I	0.001	smart_VWC_out,smart_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				49	0	0	20	13	39.3939
MUC2	0	genome.wustl.edu	37	11	1096474	1096474	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	1096474	1096474	C	A	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	missense	c.6499	p.P2167T	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788				99	0	0	45	27	37.5
RDX	0	genome.wustl.edu	37	11	110128524	110128524	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	110128524	110128524	A	C	SNP	RDX	ENST00000530749	human	ensembl	74_37	-1	known	silent	c.666	p.A222	0.517	pirsf_ERM,pfam_FERM_PH-like_C,prints_Ez/rad/moesin_like,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	RDX	HGNC	ENSG00000137710				126	0	0	96	52	35.1351
NXPE1	0	genome.wustl.edu	37	11	114393092	114393092	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	114393092	114393092	T	C	SNP	NXPE1	ENST00000424269	human	ensembl	74_37	-1	known	missense	c.1242	p.I414M	0.906	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE1	HGNC	ENSG00000095110				116	0	0	71	33	31.7308
APOA4	0	genome.wustl.edu	37	11	116692194	116692194	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	116692194	116692194	C	T	SNP	APOA4	ENST00000357780	human	ensembl	74_37	-1	known	missense	c.580	p.V194M	0.544	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA4	HGNC	ENSG00000110244				243	1	0.409836	145	85	36.9565
APOA1	0	genome.wustl.edu	37	11	116707074	116707074	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	116707074	116707074	C	T	SNP	APOA1	ENST00000236850	human	ensembl	74_37	-1	known	missense	c.254	p.R85H	0.000	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA1	HGNC	ENSG00000118137				64	0	0	46	18	28.125
SIK3	0	genome.wustl.edu	37	11	116719913	116719913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	116719913	116719913	G	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.3598	p.R1200C	0.005	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				87	0	0	51	23	31.0811
SIK3	0	genome.wustl.edu	37	11	116745890	116745890	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	116745890	116745890	C	A	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.1411	p.G471C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				33	0	0	27	19	41.3043
SIK3	0	genome.wustl.edu	37	11	116746643	116746643	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	116746643	116746643	C	T	SNP	SIK3	ENST00000375300	human	ensembl	74_37	-1	known	missense	c.1178	p.R393H	0.999	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	SIK3	HGNC	ENSG00000160584				87	0	0	58	40	40.8163
IL10RA	0	genome.wustl.edu	37	11	117860269	117860269	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	117860269	117860269	C	T	SNP	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	missense	c.301	p.R101W	0.998	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324				76	0	0	56	4	6.66667
MPZL2	0	genome.wustl.edu	37	11	118130911	118130911	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	118130911	118130911	A	G	SNP	MPZL2	ENST00000438295	human	ensembl	74_37	-1	known	missense	c.442	p.F148L	0.997	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom,prints_Myelin_P0	-	no_errors	MPZL2	HGNC	ENSG00000149573				102	0	0	71	41	36.6071
KMT2A	0	genome.wustl.edu	37	11	118365419	118365419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	118365419	118365419	G	A	SNP	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	missense	c.5291	p.R1764H	1.000	superfamily_Bromodomain,smart_Bromodomain,pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058				34	0	0	26	8	23.5294
PHLDB1	0	genome.wustl.edu	37	11	118499081	118499081	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	118499081	118499081	T	C	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	silent	c.1542	p.R514	0.037	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				16	0	0	13	15	53.5714
RNF26	0	genome.wustl.edu	37	11	119206681	119206681	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	119206681	119206681	C	A	SNP	RNF26	ENST00000311413	human	ensembl	74_37	+1	known	silent	c.849	p.G283	0.035	NULL	pfscan_Znf_RING	-	no_errors	RNF26	HGNC	ENSG00000173456				56	0	0	63	5	7.35294
MICAL2	0	genome.wustl.edu	37	11	12247894	12247894	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	12247894	12247894	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.1865	p.R622Q	1.000	superfamily_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				74	0	0	37	27	42.1875
MICAL2	0	genome.wustl.edu	37	11	12247914	12247914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	12247914	12247914	G	A	SNP	MICAL2	ENST00000256194	human	ensembl	74_37	+1	known	missense	c.1885	p.V629M	0.695	NULL	pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,pfam_FAD_bind_dom,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL2	HGNC	ENSG00000133816				65	0	0	38	20	34.4828
C11orf63	0	genome.wustl.edu	37	11	122774667	122774667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	122774667	122774667	C	T	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.379	p.R127C	0.795	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				228	0	0	158	111	41.2639
OR10S1	0	genome.wustl.edu	37	11	123848364	123848364	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	123848364	123848364	A	G	SNP	OR10S1	ENST00000531945	human	ensembl	74_37	-1	known	missense	c.35	p.M12T	0.002	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10S1	HGNC	ENSG00000196248				113	0	0	64	48	42.8571
OR8D1	0	genome.wustl.edu	37	11	124180467	124180467	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	124180467	124180467	A	G	SNP	OR8D1	ENST00000357821	human	ensembl	74_37	-1	known	silent	c.196	p.L66	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341				58	0	0	48	21	30.4348
ROBO3	0	genome.wustl.edu	37	11	124744032	124744032	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	124744032	124744032	C	T	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	silent	c.1851	p.S617	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				154	0	0	88	44	33.3333
ROBO3	0	genome.wustl.edu	37	11	124748587	124748587	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	124748587	124748587	C	A	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.3428	p.S1143Y	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134				40	0	0	19	16	45.7143
MUC5B	0	genome.wustl.edu	37	11	1278846	1278846	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	1278846	1278846	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	silent	c.16365	p.D5455	0.000	smart_VWC_out,smart_VWF_C,pfscan_VWF_C	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				32	0	0	12	10	45.4545
ADAMTS8	0	genome.wustl.edu	37	11	130278465	130278465	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	130278465	130278465	C	T	SNP	ADAMTS8	ENST00000257359	human	ensembl	74_37	-1	known	missense	c.1993	p.G665S	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS8,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS8	HGNC	ENSG00000134917				99	0	0	66	27	29.0323
JAM3	0	genome.wustl.edu	37	11	133938946	133938946	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	133938946	133938946	C	T	SNP	JAM3	ENST00000529443	human	ensembl	74_37	+1	known	missense	c.103	p.R35C	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	JAM3	HGNC	ENSG00000166086				19	0	0	17	6	26.087
MRGPRX1	0	genome.wustl.edu	37	11	18955440	18955440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	18955440	18955440	C	T	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	missense	c.892	p.A298T	0.091	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255				65	0	0	47	23	32.8571
E2F8	0	genome.wustl.edu	37	11	19256596	19256596	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	19256596	19256596	C	T	SNP	E2F8	ENST00000250024	human	ensembl	74_37	-1	known	missense	c.461	p.R154H	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F8	HGNC	ENSG00000129173				22	0	0	16	5	23.8095
NAV2	0	genome.wustl.edu	37	11	20104605	20104605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	20104605	20104605	C	T	SNP	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	missense	c.5555	p.A1852V	1.000	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				54	0	0	28	20	41.6667
ANO5	0	genome.wustl.edu	37	11	22272355	22272355	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	22272355	22272355	A	T	SNP	ANO5	ENST00000324559	human	ensembl	74_37	+1	known	missense	c.1082	p.D361V	0.996	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO5	HGNC	ENSG00000171714				108	0	0	55	44	44.4444
RPL26P30	0	genome.wustl.edu	37	11	2356954	2356954	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	2356954	2356954	G	A	SNP	RPL26P30	ENST00000602923	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL26P30	HGNC	ENSG00000236264				166	0	0	97	75	43.6047
BDNF	0	genome.wustl.edu	37	11	27680000	27680000	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	27680000	27680000	G	A	SNP	BDNF	ENST00000438929	human	ensembl	74_37	-1	known	missense	c.358	p.R120W	0.998	NULL	pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel,prints_Brain-der_neurotrophic_factor,prints_Nerve_growth_factor-rel	-	no_errors	BDNF	HGNC	ENSG00000176697				126	0	0	67	53	44.1667
OSBPL5	0	genome.wustl.edu	37	11	3125509	3125509	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	3125509	3125509	G	A	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.1158	p.R386	0.104	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				57	0	0	34	25	42.3729
QSER1	0	genome.wustl.edu	37	11	32953667	32953667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	32953667	32953667	C	T	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	missense	c.476	p.S159F	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				130	0	0	92	59	39.0728
C11orf74	0	genome.wustl.edu	37	11	36669606	36669606	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	36669606	36669606	C	T	SNP	C11orf74	ENST00000334307	human	ensembl	74_37	+1	known	silent	c.399	p.S133	0.000	NULL	NULL	-	no_errors	C11orf74	HGNC	ENSG00000166352				161	0	0	107	69	39.2045
B4GALNT4	0	genome.wustl.edu	37	11	375731	375731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	375731	375731	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.943	p.A315T	0.980	NULL	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272				50	0	0	44	5	10.2041
SIGIRR	0	genome.wustl.edu	37	11	406484	406484	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	406484	406484	G	A	SNP	SIGIRR	ENST00000382520	human	ensembl	74_37	-1	known	nonsense	c.934	p.Q312*	0.305	NULL	pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	SIGIRR	HGNC	ENSG00000185187				104	0	0	60	9	13.0435
RRM1	0	genome.wustl.edu	37	11	4148290	4148290	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	4148290	4148290	G	A	SNP	RRM1	ENST00000300738	human	ensembl	74_37	+1	known	missense	c.1496	p.R499H	1.000	pfam_RNR_lg_C,prints_RNR_lg_C,tigrfam_NrdE_NrdA	pfam_RNR_lg_C,pfam_RNR_lsu_N,pfam_ATP-cone,superfamily_RNR_R1-su_N,pfscan_ATP-cone,prints_RNR_lg_C,tigrfam_NrdE_NrdA	-	no_errors	RRM1	HGNC	ENSG00000167325				136	0	0	78	36	31.5789
TTC17	0	genome.wustl.edu	37	11	43427343	43427343	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	43427343	43427343	G	A	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	missense	c.1603	p.E535K	0.998	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				94	0	0	67	32	32.3232
TRIM21	0	genome.wustl.edu	37	11	4406852	4406852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	4406852	4406852	C	T	SNP	TRIM21	ENST00000254436	human	ensembl	74_37	-1	known	missense	c.1091	p.R364H	0.041	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Ubox_domain,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin,prints_Znf_B-box_chordata	-	no_errors	TRIM21	HGNC	ENSG00000132109				22	0	0	8	6	42.8571
AMBRA1	0	genome.wustl.edu	37	11	46419316	46419316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	46419316	46419316	G	A	SNP	AMBRA1	ENST00000458649	human	ensembl	74_37	-1	known	missense	c.3581	p.T1194M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	AMBRA1	HGNC	ENSG00000110497				57	0	0	29	16	35.5556
CKAP5	0	genome.wustl.edu	37	11	46804910	46804910	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	46804910	46804910	T	C	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.2163	p.S721	0.998	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				42	0	0	42	22	34.375
CKAP5	0	genome.wustl.edu	37	11	46819663	46819663	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	46819663	46819663	C	T	SNP	CKAP5	ENST00000415402	human	ensembl	74_37	-1	known	silent	c.1143	p.L381	0.330	pfam_CLASP_N_dom,superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,superfamily_Homing_endonucl,pfscan_HEAT_type_2	-	no_errors	CKAP5	HGNC	ENSG00000175216				124	0	0	91	51	35.9155
MADD	0	genome.wustl.edu	37	11	47312287	47312287	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	47312287	47312287	G	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.3281	p.R1094Q	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514				59	0	0	30	17	36.1702
CELF1	0	genome.wustl.edu	37	11	47504307	47504307	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	47504307	47504307	G	A	SNP	CELF1	ENST00000532048	human	ensembl	74_37	-1	known	silent	c.705	p.S235	0.998	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CELF1	HGNC	ENSG00000149187				68	0	0	43	32	42.6667
C1QTNF4	0	genome.wustl.edu	37	11	47612294	47612294	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	47612294	47612294	C	T	SNP	C1QTNF4	ENST00000302514	human	ensembl	74_37	-1	known	silent	c.69	p.P23	0.005	smart_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,prints_C1q,pfscan_C1q	-	no_errors	C1QTNF4	HGNC	ENSG00000172247				15	0	0	11	8	42.1053
OR4C13	0	genome.wustl.edu	37	11	49974073	49974073	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	49974073	49974073	C	A	SNP	OR4C13	ENST00000555099	human	ensembl	74_37	+1	known	nonsense	c.99	p.Y33*	0.015	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C13	HGNC	ENSG00000258817				151	0	0	180	10	5.26316
TRIM48	0	genome.wustl.edu	37	11	55035844	55035844	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	55035844	55035844	T	C	SNP	TRIM48	ENST00000417545	human	ensembl	74_37	+1	known	missense	c.574	p.Y192H	0.183	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM48	HGNC	ENSG00000150244				25	0	0	41	23	35.9375
OR4C16	0	genome.wustl.edu	37	11	55339828	55339828	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	55339828	55339828	A	G	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	missense	c.225	p.I75M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935				163	0	0	105	67	38.9535
OR52H1	0	genome.wustl.edu	37	11	5566416	5566416	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	5566416	5566416	T	C	SNP	OR52H1	ENST00000322653	human	ensembl	74_37	-1	known	missense	c.338	p.H113R	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52H1	HGNC	ENSG00000181616				80	0	0	58	24	29.2683
OR8H1	0	genome.wustl.edu	37	11	56058538	56058538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	56058538	56058538	T	C	SNP	OR8H1	ENST00000313022	human	ensembl	74_37	-1	known	missense	c.1	p.M1V	0.054	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H1	HGNC	ENSG00000181693				73	0	0	64	28	30.4348
OR8J1	0	genome.wustl.edu	37	11	56128015	56128015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	56128015	56128015	C	T	SNP	OR8J1	ENST00000303039	human	ensembl	74_37	+1	known	missense	c.293	p.A98V	0.928	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J1	HGNC	ENSG00000172487				98	0	0	57	31	35.2273
OR8J1	0	genome.wustl.edu	37	11	56128086	56128086	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	56128086	56128086	C	T	SNP	OR8J1	ENST00000303039	human	ensembl	74_37	+1	known	missense	c.364	p.R122C	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8J1	HGNC	ENSG00000172487				86	0	0	60	29	32.5843
OR9Q1	0	genome.wustl.edu	37	11	57947085	57947085	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	57947085	57947085	G	A	SNP	OR9Q1	ENST00000335397	human	ensembl	74_37	+1	known	missense	c.169	p.A57T	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9Q1	HGNC	ENSG00000186509				193	0	0	163	17	9.44444
OR52E4	0	genome.wustl.edu	37	11	5905781	5905781	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	5905781	5905781	T	C	SNP	OR52E4	ENST00000316987	human	ensembl	74_37	+1	known	missense	c.259	p.F87L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR52E4	HGNC	ENSG00000180974				135	0	0	76	59	43.7037
MS4A14	0	genome.wustl.edu	37	11	60183894	60183894	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	60183894	60183894	C	T	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.1453	p.R485W	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928				93	0	0	66	45	40.5405
MS4A5	0	genome.wustl.edu	37	11	60197139	60197139	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	60197139	60197139	G	A	SNP	MS4A5	ENST00000534071	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MS4A5	HGNC	ENSG00000166930				110	0	0	81	41	33.6066
OR56B3P	0	genome.wustl.edu	37	11	6149997	6149997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6149997	6149997	C	T	SNP	OR56B3P	ENST00000316517	human	ensembl	74_37	+1	known	missense	c.158	p.T53I	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR56B3P	HGNC	ENSG00000180913				28	0	0	22	11	33.3333
HNRNPUL2	0	genome.wustl.edu	37	11	62490153	62490153	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	62490153	62490153	G	A	SNP	HNRNPUL2	ENST00000301785	human	ensembl	74_37	-1	known	nonsense	c.1015	p.R339*	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_dom,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753				89	0	0	63	40	38.835
ZBTB3	0	genome.wustl.edu	37	11	62519825	62519825	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	62519825	62519825	G	A	SNP	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	missense	c.1462	p.R488W	0.728	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670				71	0	0	34	21	38.1818
CNGA4	0	genome.wustl.edu	37	11	6261451	6261451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6261451	6261451	C	T	SNP	CNGA4	ENST00000379936	human	ensembl	74_37	+1	known	missense	c.427	p.R143C	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA4	HGNC	ENSG00000132259				205	0	0	119	63	34.6154
FERMT3	0	genome.wustl.edu	37	11	63990891	63990891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	63990891	63990891	G	A	SNP	FERMT3	ENST00000279227	human	ensembl	74_37	+1	known	missense	c.1931	p.R644Q	1.000	NULL	pfam_FERM_central,pfam_Pleckstrin_homology,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT3	HGNC	ENSG00000149781				53	0	0	42	18	30
CCDC88B	0	genome.wustl.edu	37	11	64112079	64112079	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64112079	64112079	C	T	SNP	CCDC88B	ENST00000356786	human	ensembl	74_37	+1	known	missense	c.2066	p.T689M	0.001	NULL	pfam_Hook-related_fam	-	no_errors	CCDC88B	HGNC	ENSG00000168071				21	0	0	6	3	33.3333
APBB1	0	genome.wustl.edu	37	11	6416782	6416782	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6416782	6416782	C	T	SNP	APBB1	ENST00000389906	human	ensembl	74_37	-1	known	silent	c.2115	p.L705	0.006	NULL	pfam_PTB/PI_dom,pfam_WW_dom,pfam_PTB,superfamily_WW_dom,smart_WW_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_WW_dom	-	no_errors	APBB1	HGNC	ENSG00000166313				17	0	0	10	8	44.4444
NRXN2	0	genome.wustl.edu	37	11	64390500	64390500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64390500	64390500	G	A	SNP	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	missense	c.3898	p.R1300W	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				22	0	0	17	5	22.7273
CDC42BPG	0	genome.wustl.edu	37	11	64597667	64597667	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64597667	64597667	G	A	SNP	CDC42BPG	ENST00000342711	human	ensembl	74_37	-1	known	silent	c.3366	p.N1122	0.830	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPG	HGNC	ENSG00000171219				25	0	0	20	10	33.3333
SAC3D1	0	genome.wustl.edu	37	11	64812092	64812092	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64812092	64812092	A	G	SNP	SAC3D1	ENST00000398846	human	ensembl	74_37	+1	known	missense	c.970	p.T324A	0.003	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	SAC3D1	HGNC	ENSG00000168061				77	0	0	64	4	5.88235
SYVN1	0	genome.wustl.edu	37	11	64897648	64897648	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64897648	64897648	C	T	SNP	SYVN1	ENST00000377190	human	ensembl	74_37	-1	known	splice_site	c.1235-1	e12-1	0.010	-	-	-	no_errors	SYVN1	HGNC	ENSG00000162298				22	0	0	17	11	39.2857
MALAT1	0	genome.wustl.edu	37	11	65272702	65272702	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	65272702	65272702	T	C	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.919	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562				40	0	0	23	15	39.4737
EHBP1L1	0	genome.wustl.edu	37	11	65350743	65350743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	65350743	65350743	G	A	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.2600	p.R867H	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442				45	0	0	28	18	39.1304
SIPA1	0	genome.wustl.edu	37	11	65417119	65417119	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	65417119	65417119	T	C	SNP	SIPA1	ENST00000394224	human	ensembl	74_37	+1	known	silent	c.2613	p.A871	0.091	NULL	pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1	HGNC	ENSG00000213445				115	0	0	67	36	34.9515
CST6	0	genome.wustl.edu	37	11	65779667	65779667	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	65779667	65779667	C	T	SNP	CST6	ENST00000312134	human	ensembl	74_37	+1	known	missense	c.152	p.A51V	0.016	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST6	HGNC	ENSG00000175315				8	0	0	6	3	33.3333
DNHD1	0	genome.wustl.edu	37	11	6592278	6592278	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6592278	6592278	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	silent	c.13536	p.G4512	0.006	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532				52	0	0	32	11	25.5814
CD248	0	genome.wustl.edu	37	11	66084119	66084119	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	66084119	66084119	G	A	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	missense	c.380	p.P127L	0.991	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807				60	0	0	34	15	30.6122
SPTBN2	0	genome.wustl.edu	37	11	66458926	66458926	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	66458926	66458926	G	A	SNP	SPTBN2	ENST00000309996	human	ensembl	74_37	-1	known	silent	c.5394	p.A1798	0.023	pirsf_Spectrin_bsu,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN2	HGNC	ENSG00000173898				32	0	0	10	16	61.5385
DCHS1	0	genome.wustl.edu	37	11	6653519	6653519	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6653519	6653519	A	G	SNP	DCHS1	ENST00000299441	human	ensembl	74_37	-1	known	missense	c.3224	p.V1075A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341				106	0	0	47	34	41.9753
PC	0	genome.wustl.edu	37	11	66639172	66639172	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	66639172	66639172	T	C	SNP	PC	ENST00000393958	human	ensembl	74_37	-1	known	missense	c.307	p.I103V	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,pirsf_Pyruv_COase,pfscan_Biotin_carboxylation_dom,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599				12	0	0	4	4	50
RHOD	0	genome.wustl.edu	37	11	66838982	66838982	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	66838982	66838982	C	T	SNP	RHOD	ENST00000308831	human	ensembl	74_37	+1	known	missense	c.542	p.A181V	0.008	pfam_Small_GTPase,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOD	HGNC	ENSG00000173156				44	0	0	18	8	30.7692
CABP4	0	genome.wustl.edu	37	11	67225916	67225916	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67225916	67225916	G	A	SNP	CABP4	ENST00000325656	human	ensembl	74_37	+1	known	silent	c.726	p.P242	0.030	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP4	HGNC	ENSG00000175544				100	0	0	58	48	45.283
TBX10	0	genome.wustl.edu	37	11	67400555	67400555	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67400555	67400555	T	C	SNP	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	missense	c.569	p.H190R	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				236	0	0	125	74	37.1859
SUV420H1	0	genome.wustl.edu	37	11	67934466	67934466	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67934466	67934466	T	C	SNP	SUV420H1	ENST00000304363	human	ensembl	74_37	-1	known	missense	c.1157	p.Q386R	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SUV420H1	HGNC	ENSG00000110066				52	0	0	30	25	45.4545
LRP5	0	genome.wustl.edu	37	11	68153968	68153968	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	68153968	68153968	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	silent	c.1200	p.A400	0.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				75	0	0	42	21	33.3333
LRP5	0	genome.wustl.edu	37	11	68204455	68204455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	68204455	68204455	G	A	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	missense	c.4099	p.E1367K	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				89	0	0	44	27	38.0282
MTL5	0	genome.wustl.edu	37	11	68506209	68506209	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	68506209	68506209	C	T	SNP	MTL5	ENST00000255087	human	ensembl	74_37	-1	known	silent	c.876	p.S292	0.002	NULL	pfam_CRC,superfamily_Thionin	-	no_errors	MTL5	HGNC	ENSG00000132749				71	0	0	42	22	34.375
ARAP1	0	genome.wustl.edu	37	11	72423533	72423533	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	72423533	72423533	G	A	SNP	ARAP1	ENST00000393609	human	ensembl	74_37	-1	known	silent	c.828	p.D276	0.011	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_Ras-assoc,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				187	0	0	102	76	42.6966
P2RY2	0	genome.wustl.edu	37	11	72946018	72946018	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	72946018	72946018	C	T	SNP	P2RY2	ENST00000311131	human	ensembl	74_37	+1	known	missense	c.814	p.R272C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_P2Y4_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y2_rcpt,prints_GPCR_Rhodpsn,prints_P2Y4_rcpt	-	no_errors	P2RY2	HGNC	ENSG00000175591				76	0	0	40	17	29.8246
P2RY6	0	genome.wustl.edu	37	11	73008366	73008366	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	73008366	73008366	C	T	SNP	P2RY6	ENST00000349767	human	ensembl	74_37	+1	known	missense	c.803	p.T268M	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y3_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_P2Y6_rcpt,prints_GPCR_Rhodpsn,prints_P2Y3_rcpt,prints_Protea_act_rcpt	-	no_errors	P2RY6	HGNC	ENSG00000171631				146	0	0	74	40	35.0877
SYT9	0	genome.wustl.edu	37	11	7334764	7334764	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	7334764	7334764	C	T	SNP	SYT9	ENST00000318881	human	ensembl	74_37	+1	known	silent	c.636	p.D212	0.961	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743				104	0	0	55	36	39.5604
ENSG00000255847	0	genome.wustl.edu	37	11	73681282	73681282	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	73681282	73681282	G	A	SNP	ENSG00000255847	ENST00000537019	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-167N4.2	Clone_based_vega_gene	ENSG00000255847				16	0	0	12	10	45.4545
PPME1	0	genome.wustl.edu	37	11	73950295	73950295	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	73950295	73950295	C	T	SNP	PPME1	ENST00000328257	human	ensembl	74_37	+1	known	silent	c.828	p.D276	1.000	pirsf_PPase_methylesterase_euk	pirsf_PPase_methylesterase_euk	-	no_errors	PPME1	HGNC	ENSG00000214517				21	0	0	18	7	28
XRRA1	0	genome.wustl.edu	37	11	74638466	74638466	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	74638466	74638466	G	A	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	silent	c.468	p.Y156	0.910	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435				32	0	0	26	13	33.3333
ARRB1	0	genome.wustl.edu	37	11	74994515	74994515	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	74994515	74994515	A	G	SNP	ARRB1	ENST00000393505	human	ensembl	74_37	-1	known	missense	c.170	p.L57P	1.000	pfam_Arrestin-like_N,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set,prints_Arrestin	-	no_errors	ARRB1	HGNC	ENSG00000137486				31	0	0	25	11	30.5556
MAP6	0	genome.wustl.edu	37	11	75298331	75298331	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	75298331	75298331	C	A	SNP	MAP6	ENST00000304771	human	ensembl	74_37	-1	known	missense	c.2215	p.G739C	0.001	NULL	pfam_MAP6/FAM154	-	no_errors	MAP6	HGNC	ENSG00000171533				167	0	0	153	15	8.92857
OMP	0	genome.wustl.edu	37	11	76814175	76814175	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	76814175	76814175	G	A	SNP	OMP	ENST00000529803	human	ensembl	74_37	+1	known	missense	c.290	p.R97H	1.000	pfam_Olfactory_marker,superfamily_Olfactory_marker	pfam_Olfactory_marker,superfamily_Olfactory_marker	-	no_errors	OMP	HGNC	ENSG00000254550				40	0	0	16	10	38.4615
ME3	0	genome.wustl.edu	37	11	86209065	86209065	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	86209065	86209065	G	A	SNP	ME3	ENST00000359636	human	ensembl	74_37	-1	known	silent	c.645	p.C215	0.022	pfam_Malic_N	pfam_Malic_NAD-bd,pfam_Malic_N,smart_Malic_NAD-bd,prints_Malic_OxRdtase	-	no_errors	ME3	HGNC	ENSG00000151376				123	0	0	70	44	38.5965
CTSC	0	genome.wustl.edu	37	11	88068128	88068128	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	88068128	88068128	A	G	SNP	CTSC	ENST00000227266	human	ensembl	74_37	-1	known	missense	c.295	p.Y99H	1.000	pfam_CathepsinC_exc	pfam_Peptidase_C1A_C,pfam_CathepsinC_exc,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSC	HGNC	ENSG00000109861				58	0	0	39	17	30.3571
GRM5	0	genome.wustl.edu	37	11	88583098	88583098	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	88583098	88583098	G	A	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.887	p.A296V	0.913	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959				101	1	0.980392	56	23	29.1139
FAT3	0	genome.wustl.edu	37	11	92507279	92507279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	92507279	92507279	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.4268	p.A1423V	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				59	0	0	40	17	29.8246
FAT3	0	genome.wustl.edu	37	11	92533807	92533807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	92533807	92533807	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7628	p.R2543Q	0.984	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				23	0	0	10	5	33.3333
FUT4	0	genome.wustl.edu	37	11	94278208	94278208	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	94278208	94278208	C	T	SNP	FUT4	ENST00000358752	human	ensembl	74_37	+1	known	silent	c.909	p.S303	0.682	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT4	HGNC	ENSG00000196371				42	0	0	23	9	28.125
UTP20	0	genome.wustl.edu	37	12	101736357	101736357	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	101736357	101736357	C	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	missense	c.4235	p.T1412M	0.008	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800				25	0	0	13	13	50
STAB2	0	genome.wustl.edu	37	12	104139055	104139055	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	104139055	104139055	G	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.6136	p.V2046F	1.000	smart_EGF_laminin	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011				24	0	0	15	9	37.5
NUAK1	0	genome.wustl.edu	37	12	106461103	106461103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	106461103	106461103	G	A	SNP	NUAK1	ENST00000261402	human	ensembl	74_37	-1	known	missense	c.1463	p.S488L	0.987	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	NUAK1	HGNC	ENSG00000074590				92	0	0	56	28	33.3333
FICD	0	genome.wustl.edu	37	12	108910878	108910878	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	108910878	108910878	G	A	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	silent	c.129	p.P43	0.670	NULL	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				37	0	0	26	17	39.5349
MYO1H	0	genome.wustl.edu	37	12	109839056	109839056	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	109839056	109839056	G	A	SNP	MYO1H	ENST00000431443	human	ensembl	74_37	+1	known	silent	c.681	p.Q227	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYO1H	HGNC	ENSG00000174527				21	0	0	16	11	40.7407
ATXN2	0	genome.wustl.edu	37	12	111908405	111908405	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	111908405	111908405	G	T	SNP	ATXN2	ENST00000377617	human	ensembl	74_37	-1	known	missense	c.3140	p.P1047Q	1.000	NULL	pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom	-	no_errors	ATXN2	HGNC	ENSG00000204842				123	0	0	69	37	34.9057
RPH3A	0	genome.wustl.edu	37	12	113328777	113328777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	113328777	113328777	G	A	SNP	RPH3A	ENST00000389385	human	ensembl	74_37	+1	known	missense	c.1744	p.A582T	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	pfam_C2_dom,pfam_Znf_FYVE-typ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel,prints_Synaptotagmin,prints_C2_dom	-	no_errors	RPH3A	HGNC	ENSG00000089169				38	0	0	21	13	38.2353
DTX1	0	genome.wustl.edu	37	12	113515236	113515236	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	113515236	113515236	G	A	SNP	DTX1	ENST00000257600	human	ensembl	74_37	+1	known	missense	c.267	p.M89I	1.000	pfam_WWE-dom,smart_WWE-dom_subgr,pfscan_WWE-dom	pfam_WWE-dom,smart_WWE-dom_subgr,smart_Znf_RING,pfscan_WWE-dom,pfscan_Znf_RING	-	no_errors	DTX1	HGNC	ENSG00000135144				65	0	0	31	20	39.2157
DDX54	0	genome.wustl.edu	37	12	113601049	113601049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	113601049	113601049	G	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.1969	p.R657W	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				60	0	0	28	28	50
DDX54	0	genome.wustl.edu	37	12	113603823	113603823	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	113603823	113603823	C	A	SNP	DDX54	ENST00000314045	human	ensembl	74_37	-1	known	missense	c.1429	p.D477Y	0.984	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DBP10CT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX54	HGNC	ENSG00000123064				61	0	0	39	13	25
IQCD	0	genome.wustl.edu	37	12	113645772	113645772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	113645772	113645772	G	A	SNP	IQCD	ENST00000416617	human	ensembl	74_37	-1	known	missense	c.200	p.T67I	0.615	NULL	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCD	HGNC	ENSG00000166578				201	0	0	114	72	38.7097
MAP1LC3B2	0	genome.wustl.edu	37	12	117013778	117013778	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	117013778	117013778	C	T	SNP	MAP1LC3B2	ENST00000306985	human	ensembl	74_37	+1	known	missense	c.31	p.R11C	0.183	NULL	pfam_Atg8_fam,pfam_Atg12	-	no_errors	MAP1LC3B2	HGNC	ENSG00000171471				97	0	0	54	57	51.3514
NOS1	0	genome.wustl.edu	37	12	117672561	117672561	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	117672561	117672561	C	T	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3044	p.R1015Q	1.000	pfam_FAD-binding_1,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				22	0	0	9	8	47.0588
KSR2	0	genome.wustl.edu	37	12	118198971	118198971	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	118198971	118198971	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	silent	c.831	p.P277	0.142	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435				299	0	0	149	99	39.9194
CCDC60	0	genome.wustl.edu	37	12	119916943	119916943	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	119916943	119916943	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	missense	c.386	p.T129I	0.000	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273				55	0	0	30	19	38.7755
GCN1L1	0	genome.wustl.edu	37	12	120576636	120576636	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	120576636	120576636	C	T	SNP	GCN1L1	ENST00000300648	human	ensembl	74_37	-1	known	missense	c.6019	p.V2007M	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_DUF3554,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	GCN1L1	HGNC	ENSG00000089154				191	0	0	112	53	32.1212
SPPL3	0	genome.wustl.edu	37	12	121229361	121229361	+	Splice_Site	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	121229361	121229361	C	A	SNP	SPPL3	ENST00000353487	human	ensembl	74_37	-1	known	splice_site	c.102-1	e3-1	1.000	-	-	-	no_errors	SPPL3	HGNC	ENSG00000157837				51	0	0	27	24	47.0588
RNF34	0	genome.wustl.edu	37	12	121868063	121868063	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	121868063	121868063	G	A	SNP	RNF34	ENST00000392464	human	ensembl	74_37	+1	putative	silent	c.1290	p.P430	0.016	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	RNF34	HGNC	ENSG00000170633				68	0	0	45	30	40
KDM2B	0	genome.wustl.edu	37	12	121932375	121932375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	121932375	121932375	G	A	SNP	KDM2B	ENST00000538046	human	ensembl	74_37	-1	putative	missense	c.1471	p.R491C	0.000	NULL	NULL	-	no_errors	KDM2B	HGNC	ENSG00000089094				23	0	0	13	10	43.4783
HPD	0	genome.wustl.edu	37	12	122295334	122295334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	122295334	122295334	G	A	SNP	HPD	ENST00000289004	human	ensembl	74_37	-1	known	missense	c.98	p.T33M	0.980	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104				69	0	0	52	30	36.5854
WDR66	0	genome.wustl.edu	37	12	122439464	122439464	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	122439464	122439464	C	T	SNP	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	silent	c.3297	p.P1099	0.030	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023				110	0	0	53	42	44.2105
HCAR3	0	genome.wustl.edu	37	12	123200619	123200619	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	123200619	123200619	C	T	SNP	HCAR3	ENST00000528880	human	ensembl	74_37	-1	known	silent	c.666	p.R222	0.111	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	HCAR3	HGNC	ENSG00000255398				37	0	0	29	12	29.2683
HIP1R	0	genome.wustl.edu	37	12	123334437	123334437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	123334437	123334437	C	T	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	missense	c.373	p.R125C	1.000	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				59	0	0	41	8	16.3265
PITPNM2	0	genome.wustl.edu	37	12	123472180	123472180	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	123472180	123472180	C	T	SNP	PITPNM2	ENST00000320201	human	ensembl	74_37	-1	known	silent	c.3141	p.P1047	0.115	NULL	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM2	HGNC	ENSG00000090975				64	0	0	30	14	31.8182
FZD10	0	genome.wustl.edu	37	12	130647705	130647705	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	130647705	130647705	C	T	SNP	FZD10	ENST00000229030	human	ensembl	74_37	+1	known	missense	c.218	p.P73L	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD10	HGNC	ENSG00000111432				73	0	0	60	8	11.7647
RIMBP2	0	genome.wustl.edu	37	12	130926898	130926898	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	130926898	130926898	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.948	p.G316	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709				144	0	0	104	59	36.1963
EP400	0	genome.wustl.edu	37	12	132445535	132445535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	132445535	132445535	C	T	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	missense	c.371	p.T124M	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495				15	0	0	10	9	47.3684
GOLGA3	0	genome.wustl.edu	37	12	133362988	133362988	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	133362988	133362988	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	silent	c.3060	p.A1020	0.001	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615				34	0	0	21	13	38.2353
GRIN2B	0	genome.wustl.edu	37	12	13717474	13717474	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	13717474	13717474	G	A	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.2698	p.R900C	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079				188	0	0	130	73	35.9606
PLEKHA5	0	genome.wustl.edu	37	12	19418767	19418767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	19418767	19418767	C	T	SNP	PLEKHA5	ENST00000317589	human	ensembl	74_37	+1	known	missense	c.694	p.R232C	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				85	0	0	63	28	30.7692
PDE3A	0	genome.wustl.edu	37	12	20523104	20523104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	20523104	20523104	G	A	SNP	PDE3A	ENST00000359062	human	ensembl	74_37	+1	known	missense	c.886	p.V296M	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572				35	0	0	32	21	39.6226
DCP1B	0	genome.wustl.edu	37	12	2058419	2058419	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	2058419	2058419	C	T	SNP	DCP1B	ENST00000280665	human	ensembl	74_37	-1	known	missense	c.1606	p.V536I	0.000	NULL	pfam_DCP1	-	no_errors	DCP1B	HGNC	ENSG00000151065				51	0	0	23	14	37.8378
SLCO1C1	0	genome.wustl.edu	37	12	20874789	20874789	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	20874789	20874789	T	G	SNP	SLCO1C1	ENST00000381552	human	ensembl	74_37	+1	known	missense	c.827	p.L276R	1.000	pfam_OA_transporter,pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO1C1	HGNC	ENSG00000139155				40	0	0	31	15	32.6087
SLCO1A2	0	genome.wustl.edu	37	12	21453486	21453486	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	21453486	21453486	G	A	SNP	SLCO1A2	ENST00000307378	human	ensembl	74_37	-1	known	missense	c.706	p.P236S	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1A2	HGNC	ENSG00000084453				24	0	0	17	12	41.3793
ST8SIA1	0	genome.wustl.edu	37	12	22408261	22408261	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	22408261	22408261	C	A	SNP	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	missense	c.444	p.K148N	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				134	0	0	87	50	36.4964
ST8SIA1	0	genome.wustl.edu	37	12	22487107	22487107	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	22487107	22487107	C	T	SNP	ST8SIA1	ENST00000396037	human	ensembl	74_37	-1	known	silent	c.60	p.A20	1.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST8SIA1	HGNC	ENSG00000111728				111	0	0	59	46	43.8095
KRAS	0	genome.wustl.edu	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	25398281	25398281	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.38	p.G13D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703				31	0	0	14	11	44
CACNA1C	0	genome.wustl.edu	37	12	2717706	2717706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	2717706	2717706	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.3386	p.T1129M	0.995	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				20	0	0	13	4	23.5294
C12orf71	0	genome.wustl.edu	37	12	27235392	27235392	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	27235392	27235392	C	T	SNP	C12orf71	ENST00000429849	human	ensembl	74_37	-1	known	missense	c.25	p.D9N	0.000	NULL	NULL	-	no_errors	C12orf71	HGNC	ENSG00000214700				31	0	0	16	11	40.7407
FAR2	0	genome.wustl.edu	37	12	29486714	29486714	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	29486714	29486714	C	T	SNP	FAR2	ENST00000182377	human	ensembl	74_37	+1	known	missense	c.1535	p.T512M	0.991	NULL	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_Polysac_CapD-like	-	no_errors	FAR2	HGNC	ENSG00000064763				72	0	0	45	33	42.3077
OVCH1	0	genome.wustl.edu	37	12	29639191	29639191	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	29639191	29639191	C	A	SNP	OVCH1	ENST00000318184	human	ensembl	74_37	-1	known	missense	c.983	p.R328I	0.001	NULL	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,smart_Peptidase_S1,smart_CUB_dom,pfscan_CUB_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	OVCH1	HGNC	ENSG00000187950				80	0	0	37	37	50
TMTC1	0	genome.wustl.edu	37	12	29659730	29659730	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	29659730	29659730	C	T	SNP	TMTC1	ENST00000319685	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	TMTC1	HGNC	ENSG00000133687				58	0	0	38	31	44.9275
DDX11	0	genome.wustl.edu	37	12	31242911	31242911	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	31242911	31242911	C	T	SNP	DDX11	ENST00000542129	human	ensembl	74_37	+1	known	missense	c.884	p.A295V	0.995	smart_Helicase-like_DEXD_c2	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573				11	0	0	8	5	38.4615
ENSG00000245482	0	genome.wustl.edu	37	12	34176779	34176779	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	34176779	34176779	T	C	SNP	ENSG00000245482	ENST00000501954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-847H18.2	Clone_based_vega_gene	ENSG00000245482				18	0	0	14	7	33.3333
KIF21A	0	genome.wustl.edu	37	12	39752103	39752103	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	39752103	39752103	G	A	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	silent	c.1092	p.Y364	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116				188	0	0	112	65	36.7232
LRRK2	0	genome.wustl.edu	37	12	40704300	40704300	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	40704300	40704300	G	A	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	missense	c.4385	p.R1462H	1.000	superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				145	0	0	154	17	9.94152
LRRK2	0	genome.wustl.edu	37	12	40740562	40740562	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	40740562	40740562	T	C	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.6117	p.R2039	0.685	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				28	0	0	30	9	23.0769
CNTN1	0	genome.wustl.edu	37	12	41374776	41374776	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	41374776	41374776	T	C	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	missense	c.1870	p.W624R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				132	0	0	66	59	47.2
CCNT1	0	genome.wustl.edu	37	12	49110342	49110342	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49110342	49110342	C	T	SNP	CCNT1	ENST00000261900	human	ensembl	74_37	-1	known	silent	c.117	p.Q39	1.000	pfam_Cyclin_N,superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNT1	HGNC	ENSG00000129315				138	0	0	95	58	37.9085
ADCY6	0	genome.wustl.edu	37	12	49177014	49177014	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49177014	49177014	G	A	SNP	ADCY6	ENST00000307885	human	ensembl	74_37	-1	known	silent	c.204	p.D68	0.759	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY6	HGNC	ENSG00000174233				70	0	0	33	15	31.25
CACNB3	0	genome.wustl.edu	37	12	49221650	49221650	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49221650	49221650	C	T	SNP	CACNB3	ENST00000301050	human	ensembl	74_37	+1	known	missense	c.1423	p.R475C	1.000	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB3	HGNC	ENSG00000167535				46	0	0	34	13	27.6596
LOC101927267	0	genome.wustl.edu	37	12	49690915	49690915	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49690915	49690915	T	C	SNP	LOC101927267	ENST00000553259	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-161H23.9	Clone_based_vega_gene	ENSG00000258334				83	0	0	46	30	39.4737
KCNH3	0	genome.wustl.edu	37	12	49938099	49938099	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49938099	49938099	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1123	p.A375T	1.000	pfam_Ion_trans_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519				33	0	0	11	5	31.25
ACVR1B	0	genome.wustl.edu	37	12	52374774	52374774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	52374774	52374774	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	missense	c.602	p.R201H	1.000	pfam_TGF_beta_rcpt_GS,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				53	0	0	40	19	32.2034
KRT86	0	genome.wustl.edu	37	12	52695798	52695798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	52695798	52695798	G	A	SNP	KRT86	ENST00000293525	human	ensembl	74_37	+1	known	missense	c.98	p.R33H	0.989	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT86	HGNC	ENSG00000170442				60	0	0	24	27	52.9412
KRT6B	0	genome.wustl.edu	37	12	52845339	52845339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	52845339	52845339	G	A	SNP	KRT6B	ENST00000252252	human	ensembl	74_37	-1	known	missense	c.524	p.A175V	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6B	HGNC	ENSG00000185479				145	0	0	115	22	16.0584
KRT6A	0	genome.wustl.edu	37	12	52886449	52886449	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	52886449	52886449	G	A	SNP	KRT6A	ENST00000330722	human	ensembl	74_37	-1	known	missense	c.524	p.A175V	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT6A	HGNC	ENSG00000205420				174	0	0	158	9	5.38922
KRT73	0	genome.wustl.edu	37	12	53002213	53002213	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	53002213	53002213	C	T	SNP	KRT73	ENST00000305748	human	ensembl	74_37	-1	known	missense	c.1390	p.G464R	0.005	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT73	HGNC	ENSG00000186049				32	0	0	25	13	34.2105
KRT4	0	genome.wustl.edu	37	12	53207430	53207430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	53207430	53207430	C	T	SNP	KRT4	ENST00000293774	human	ensembl	74_37	-1	known	missense	c.635	p.R212H	0.965	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT4	HGNC	ENSG00000170477				166	0	0	96	83	46.3687
MAP3K12	0	genome.wustl.edu	37	12	53875972	53875972	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	53875972	53875972	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	missense	c.2234	p.R745H	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				134	0	0	140	13	8.49673
HOXC13	0	genome.wustl.edu	37	12	54338978	54338978	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	54338978	54338978	C	T	SNP	HOXC13	ENST00000243056	human	ensembl	74_37	+1	known	missense	c.931	p.R311W	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_HoxA13_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HOXC13	HGNC	ENSG00000123364				95	0	0	51	27	34.6154
HOXC8	0	genome.wustl.edu	37	12	54403386	54403386	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	54403386	54403386	G	A	SNP	HOXC8	ENST00000040584	human	ensembl	74_37	+1	known	silent	c.318	p.A106	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_HTH_motif	-	no_errors	HOXC8	HGNC	ENSG00000037965				207	1	0.480769	121	82	40.3941
IKZF4	0	genome.wustl.edu	37	12	56415292	56415292	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56415292	56415292	C	T	SNP	IKZF4	ENST00000262032	human	ensembl	74_37	+1	known	silent	c.15	p.P5	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF4	HGNC	ENSG00000123411				11	0	0	8	4	33.3333
ERBB3	0	genome.wustl.edu	37	12	56481671	56481671	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56481671	56481671	T	C	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.706	p.S236P	0.987	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				185	0	0	105	55	34.375
ERBB3	0	genome.wustl.edu	37	12	56487604	56487604	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56487604	56487604	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.1537	p.G513C	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				133	0	0	81	38	31.9328
PAN2	0	genome.wustl.edu	37	12	56720737	56720737	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56720737	56720737	C	T	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.926	p.C309Y	1.000	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473				71	0	0	44	21	32.3077
RBMS2	0	genome.wustl.edu	37	12	56962790	56962790	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56962790	56962790	C	T	SNP	RBMS2	ENST00000262031	human	ensembl	74_37	+1	known	silent	c.265	p.L89	0.972	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMS2	HGNC	ENSG00000076067				30	0	0	30	14	31.8182
NACA	0	genome.wustl.edu	37	12	57113059	57113059	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57113059	57113059	T	C	SNP	NACA	ENST00000454682	human	ensembl	74_37	-1	known	missense	c.2255	p.D752G	0.304	NULL	pfam_Nas_poly-pep-assoc_cplx_dom,superfamily_UBA-like,pfscan_Nas_poly-pep-assoc_cplx_dom	-	no_errors	NACA	HGNC	ENSG00000196531				13	0	0	9	3	25
RDH16	0	genome.wustl.edu	37	12	57351279	57351279	+	RNA	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57351279	57351279	G	T	SNP	RDH16	ENST00000360752	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RDH16	HGNC	ENSG00000139547				68	0	0	40	23	36.5079
NAB2	0	genome.wustl.edu	37	12	57485188	57485188	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57485188	57485188	G	A	SNP	NAB2	ENST00000300131	human	ensembl	74_37	+1	known	missense	c.364	p.V122I	0.625	NULL	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886				166	0	0	74	37	33.3333
STAT6	0	genome.wustl.edu	37	12	57499332	57499332	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57499332	57499332	G	A	SNP	STAT6	ENST00000300134	human	ensembl	74_37	-1	known	missense	c.731	p.A244V	0.639	pfam_STAT_TF_alpha,superfamily_STAT_TF_coiled-coil	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT6	HGNC	ENSG00000166888				35	0	0	20	12	37.5
MBD6	0	genome.wustl.edu	37	12	57919830	57919830	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57919830	57919830	G	A	SNP	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	missense	c.1079	p.R360H	0.999	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				72	0	0	35	36	50.7042
MBD6	0	genome.wustl.edu	37	12	57922092	57922092	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57922092	57922092	C	T	SNP	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	missense	c.2569	p.R857W	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				25	0	0	20	12	37.5
AVIL	0	genome.wustl.edu	37	12	58203443	58203443	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	58203443	58203443	G	T	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.876	p.I292	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				78	0	0	48	29	37.6623
AVIL	0	genome.wustl.edu	37	12	58207051	58207051	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	58207051	58207051	A	G	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.297	p.H99	0.943	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				173	0	0	76	52	40.625
ANO2	0	genome.wustl.edu	37	12	5939605	5939605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	5939605	5939605	C	T	SNP	ANO2	ENST00000356134	human	ensembl	74_37	-1	known	missense	c.827	p.R276H	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO2	HGNC	ENSG00000047617				20	0	0	9	8	47.0588
VWF	0	genome.wustl.edu	37	12	6103094	6103094	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	6103094	6103094	C	T	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.6532	p.A2178T	0.045	pirsf_VWF,pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				65	0	0	47	30	38.961
MSRB3	0	genome.wustl.edu	37	12	65762800	65762800	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	65762800	65762800	G	A	SNP	MSRB3	ENST00000355192	human	ensembl	74_37	+1	known	missense	c.307	p.G103S	1.000	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	pfam_Met_Sox_Rdtase_MsrB,superfamily_Mss4-like,tigrfam_Met_Sox_Rdtase_MsrB	-	no_errors	MSRB3	HGNC	ENSG00000174099				36	0	0	24	16	40
B4GALNT3	0	genome.wustl.edu	37	12	662743	662743	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	662743	662743	G	A	SNP	B4GALNT3	ENST00000266383	human	ensembl	74_37	+1	known	missense	c.1654	p.A552T	0.000	NULL	pfam_PA14,pfam_Chond_GalNAc,smart_PA14	-	no_errors	B4GALNT3	HGNC	ENSG00000139044				69	0	0	40	18	31.0345
LPAR5	0	genome.wustl.edu	37	12	6729439	6729439	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	6729439	6729439	G	A	SNP	LPAR5	ENST00000329858	human	ensembl	74_37	-1	known	missense	c.976	p.R326W	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR5	HGNC	ENSG00000184574				22	0	0	6	8	57.1429
COPS7A	0	genome.wustl.edu	37	12	6840179	6840179	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	6840179	6840179	G	A	SNP	COPS7A	ENST00000229251	human	ensembl	74_37	+1	known	missense	c.802	p.A268T	0.995	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652				51	0	0	30	14	31.8182
NUP107	0	genome.wustl.edu	37	12	69113183	69113183	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	69113183	69113183	A	G	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	silent	c.1146	p.K382	0.893	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581				51	0	0	44	19	30.1587
ZFC3H1	0	genome.wustl.edu	37	12	72013181	72013181	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	72013181	72013181	G	A	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	silent	c.5058	p.G1686	0.543	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858				36	0	0	24	20	45.4545
TPH2	0	genome.wustl.edu	37	12	72425063	72425063	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	72425063	72425063	T	C	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.1190	p.V397A	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287				115	0	0	60	53	46.9027
TRHDE	0	genome.wustl.edu	37	12	73014965	73014965	+	Silent	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	73014965	73014965	T	A	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	silent	c.2412	p.V804	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657				58	0	0	54	16	22.8571
CD163L1	0	genome.wustl.edu	37	12	7531681	7531681	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	7531681	7531681	G	A	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.2264	p.S755L	0.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675				78	0	0	63	34	35.0515
SLC2A3	0	genome.wustl.edu	37	12	8083109	8083109	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	8083109	8083109	T	G	SNP	SLC2A3	ENST00000075120	human	ensembl	74_37	-1	known	missense	c.640	p.I214L	1.000	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,prints_Sugar/inositol_transpt,prints_Glc_transpt_3,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A3	HGNC	ENSG00000059804				125	0	0	58	51	46.789
PPFIA2	0	genome.wustl.edu	37	12	81661753	81661753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	81661753	81661753	C	T	SNP	PPFIA2	ENST00000549396	human	ensembl	74_37	-1	known	missense	c.3424	p.D1142N	1.000	pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA2	HGNC	ENSG00000139220				13	0	0	4	4	50
FAM86FP	0	genome.wustl.edu	37	12	8391292	8391292	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	8391292	8391292	G	A	SNP	FAM86FP	ENST00000427893	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.197	-	-	-	no_errors	FAM86FP	HGNC	ENSG00000164845				46	0	0	53	13	19.697
LOC101927905	0	genome.wustl.edu	37	12	8391338	8391338	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	8391338	8391338	T	C	SNP	LOC101927905	ENST00000304751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	RP11-266K4.9	Clone_based_vega_gene	ENSG00000215241				43	0	0	51	17	25
ALX1	0	genome.wustl.edu	37	12	85674140	85674140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	85674140	85674140	C	T	SNP	ALX1	ENST00000316824	human	ensembl	74_37	+1	known	missense	c.101	p.T34M	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX1	HGNC	ENSG00000180318				106	0	0	61	34	35.7895
PHC1	0	genome.wustl.edu	37	12	9089850	9089850	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	9089850	9089850	C	T	SNP	PHC1	ENST00000543824	human	ensembl	74_37	+1	known	silent	c.2556	p.R852	0.006	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_Znf_MYM,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC1	HGNC	ENSG00000111752				17	0	0	17	7	29.1667
LUM	0	genome.wustl.edu	37	12	91497971	91497971	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	91497971	91497971	G	A	SNP	LUM	ENST00000266718	human	ensembl	74_37	-1	known	missense	c.988	p.R330C	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329				67	0	0	55	24	30.3797
EEA1	0	genome.wustl.edu	37	12	93206754	93206754	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	93206754	93206754	A	G	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	splice_site	c.2043+2	e16+2	1.000	-	-	-	no_errors	EEA1	HGNC	ENSG00000102189				73	0	0	46	26	36.1111
PZP	0	genome.wustl.edu	37	12	9345170	9345170	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	9345170	9345170	C	T	SNP	PZP	ENST00000261336	human	ensembl	74_37	-1	known	missense	c.1420	p.A474T	0.001	pfam_A2M_N_2	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd	-	no_errors	PZP	HGNC	ENSG00000126838				126	0	0	82	9	9.89011
ELK3	0	genome.wustl.edu	37	12	96641143	96641143	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	96641143	96641143	C	T	SNP	ELK3	ENST00000228741	human	ensembl	74_37	+1	known	silent	c.633	p.S211	0.918	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELK3	HGNC	ENSG00000111145				128	0	0	63	47	42.7273
CLEC2D	0	genome.wustl.edu	37	12	9847461	9847461	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	9847461	9847461	A	G	SNP	CLEC2D	ENST00000290855	human	ensembl	74_37	+1	known	missense	c.567	p.I189M	0.000	NULL	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493				44	0	0	21	11	34.375
FAM155A	0	genome.wustl.edu	37	13	108518676	108518676	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	108518676	108518676	T	C	SNP	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	missense	c.269	p.Q90R	0.989	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442				34	0	0	15	19	55.8824
LIG4	0	genome.wustl.edu	37	13	108861668	108861668	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	108861668	108861668	G	T	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.1949	p.T650N	0.867	superfamily_BRCT_dom	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				51	0	0	40	19	32.2034
COL4A1	0	genome.wustl.edu	37	13	110828808	110828808	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	110828808	110828808	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.3021	p.P1007	0.997	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498				98	0	0	67	8	10.6667
CARS2	0	genome.wustl.edu	37	13	111358282	111358282	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	111358282	111358282	C	A	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.159	p.Q53H	0.993	tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905				8	0	0	3	3	50
TEX29	0	genome.wustl.edu	37	13	111980580	111980580	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	111980580	111980580	C	T	SNP	TEX29	ENST00000283547	human	ensembl	74_37	+1	known	nonsense	c.109	p.R37*	0.516	NULL	NULL	-	no_errors	TEX29	HGNC	ENSG00000153495				89	0	0	36	26	41.9355
SPACA7	0	genome.wustl.edu	37	13	113052428	113052428	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	113052428	113052428	G	T	SNP	SPACA7	ENST00000283550	human	ensembl	74_37	+1	known	missense	c.217	p.A73S	0.000	NULL	NULL	-	no_errors	SPACA7	HGNC	ENSG00000153498				103	0	0	86	6	6.52174
GAS6	0	genome.wustl.edu	37	13	114535847	114535847	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	114535847	114535847	G	A	SNP	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	missense	c.842	p.A281V	0.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				11	0	0	4	5	55.5556
MPHOSPH8	0	genome.wustl.edu	37	13	20235838	20235838	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	20235838	20235838	G	A	SNP	MPHOSPH8	ENST00000414242	human	ensembl	74_37	+1	known	missense	c.1792	p.D598N	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Chromo_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Chromo_domain/shadow	-	no_errors	MPHOSPH8	HGNC	ENSG00000196199				184	0	0	113	65	36.5169
SACS	0	genome.wustl.edu	37	13	23905080	23905080	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	23905080	23905080	G	T	SNP	SACS	ENST00000382292	human	ensembl	74_37	-1	known	missense	c.12935	p.S4312Y	0.769	superfamily_DnaJ_domain,pfscan_DnaJ_domain	pfam_HEPN,pfam_Ubiquitin_dom,superfamily_HATPase_ATP-bd,superfamily_DnaJ_domain,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_domain,pfscan_Ubiquitin_supergroup	-	no_errors	SACS	HGNC	ENSG00000151835				160	0	0	105	58	35.5828
C1QTNF9	0	genome.wustl.edu	37	13	24892996	24892996	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	24892996	24892996	G	A	SNP	C1QTNF9	ENST00000332018	human	ensembl	74_37	+1	known	silent	c.207	p.T69	0.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF9	HGNC	ENSG00000240654				111	0	0	50	24	32.4324
PARP4	0	genome.wustl.edu	37	13	25030482	25030482	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	25030482	25030482	G	A	SNP	PARP4	ENST00000381989	human	ensembl	74_37	-1	known	silent	c.2559	p.S853	0.558	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_VIT,pfam_VWF_A,pfam_BRCT_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_VIT,smart_VWF_A,pfscan_BRCT_dom,pfscan_VWF_A,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP4	HGNC	ENSG00000102699				68	0	0	49	18	26.8657
AMER2	0	genome.wustl.edu	37	13	25745243	25745243	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	25745243	25745243	C	T	SNP	AMER2	ENST00000515384	human	ensembl	74_37	-1	known	missense	c.515	p.R172H	0.010	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER2	HGNC	ENSG00000165566				49	0	0	38	5	11.6279
ATP8A2	0	genome.wustl.edu	37	13	26117431	26117431	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	26117431	26117431	T	C	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.782	p.L261P	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				104	0	0	57	31	35.2273
ATP8A2	0	genome.wustl.edu	37	13	26153014	26153014	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	26153014	26153014	A	C	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	missense	c.1844	p.H615P	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932				48	0	0	37	16	30.1887
SHISA2	0	genome.wustl.edu	37	13	26620777	26620777	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	26620777	26620777	G	A	SNP	SHISA2	ENST00000319420	human	ensembl	74_37	-1	known	silent	c.762	p.H254	0.108	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730				78	0	0	34	25	42.3729
GPR12	0	genome.wustl.edu	37	13	27332975	27332975	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	27332975	27332975	C	T	SNP	GPR12	ENST00000381436	human	ensembl	74_37	-1	known	silent	c.990	p.S330	0.008	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR_3/6/12_orphan,prints_GPR12,prints_GPCR_Rhodpsn	-	no_errors	GPR12	HGNC	ENSG00000132975				42	0	0	31	17	35.4167
USP12	0	genome.wustl.edu	37	13	27645266	27645266	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	27645266	27645266	T	C	SNP	USP12	ENST00000282344	human	ensembl	74_37	-1	known	missense	c.953	p.Y318C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP12	HGNC	ENSG00000152484				48	0	0	31	22	41.5094
SLC46A3	0	genome.wustl.edu	37	13	29292078	29292078	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	29292078	29292078	T	C	SNP	SLC46A3	ENST00000266943	human	ensembl	74_37	-1	known	missense	c.58	p.T20A	0.147	pfam_MFS	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC46A3	HGNC	ENSG00000139508				97	0	0	46	30	39.4737
SPG20	0	genome.wustl.edu	37	13	36888472	36888472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	36888472	36888472	G	A	SNP	SPG20	ENST00000355182	human	ensembl	74_37	-1	known	missense	c.1375	p.R459W	1.000	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104				125	0	0	78	35	30.9735
SMAD9	0	genome.wustl.edu	37	13	37427804	37427804	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	37427804	37427804	A	C	SNP	SMAD9	ENST00000379826	human	ensembl	74_37	-1	known	missense	c.1012	p.L338V	0.999	pfam_SMAD_dom_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD9	HGNC	ENSG00000120693				55	0	0	34	13	27.6596
POSTN	0	genome.wustl.edu	37	13	38145470	38145470	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	38145470	38145470	G	A	SNP	POSTN	ENST00000497145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POSTN	HGNC	ENSG00000133110				58	0	0	35	17	32.6923
POSTN	0	genome.wustl.edu	37	13	38171373	38171373	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	38171373	38171373	A	T	SNP	POSTN	ENST00000379747	human	ensembl	74_37	-1	known	missense	c.166	p.Y56N	1.000	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	POSTN	HGNC	ENSG00000133110				49	0	0	33	19	36.5385
PROSER1	0	genome.wustl.edu	37	13	39586971	39586971	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	39586971	39586971	G	A	SNP	PROSER1	ENST00000352251	human	ensembl	74_37	-1	known	silent	c.2418	p.F806	1.000	NULL	NULL	-	no_errors	PROSER1	HGNC	ENSG00000120685				147	0	0	108	9	7.69231
MTRF1	0	genome.wustl.edu	37	13	41834765	41834765	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	41834765	41834765	C	T	SNP	MTRF1	ENST00000430347	human	ensembl	74_37	-1	known	silent	c.318	p.L106	0.032	NULL	pfam_Pep_chain_release_fac_I_II,pfam_PCRF,smart_PCRF	-	no_errors	MTRF1	HGNC	ENSG00000120662				207	0	0	151	78	34.0611
TNFSF11	0	genome.wustl.edu	37	13	43174915	43174915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	43174915	43174915	C	T	SNP	TNFSF11	ENST00000239849	human	ensembl	74_37	+1	known	missense	c.415	p.H139Y	0.005	pirsf_TNF_ligand_10/11	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF11	HGNC	ENSG00000120659				54	0	0	36	20	35.7143
NUFIP1	0	genome.wustl.edu	37	13	45563529	45563529	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	45563529	45563529	G	A	SNP	NUFIP1	ENST00000379161	human	ensembl	74_37	-1	known	missense	c.43	p.H15Y	0.012	NULL	pfam_NUFIP1_cons_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	NUFIP1	HGNC	ENSG00000083635				18	0	0	11	4	26.6667
SIAH3	0	genome.wustl.edu	37	13	46358084	46358084	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	46358084	46358084	G	A	SNP	SIAH3	ENST00000400405	human	ensembl	74_37	-1	known	missense	c.244	p.R82C	0.007	NULL	pfam_7-in-absentia-prot_TRAF-dom,superfamily_TRAF-like	-	no_errors	SIAH3	HGNC	ENSG00000215475				48	0	0	24	21	46.6667
KIAA0226L	0	genome.wustl.edu	37	13	46917563	46917563	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	46917563	46917563	G	A	SNP	KIAA0226L	ENST00000378787	human	ensembl	74_37	-1	known	nonsense	c.1792	p.R598*	0.174	NULL	NULL	-	no_errors	KIAA0226L	HGNC	ENSG00000102445				57	0	0	32	16	33.3333
RCBTB2	0	genome.wustl.edu	37	13	49085916	49085916	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	49085916	49085916	C	T	SNP	RCBTB2	ENST00000430805	human	ensembl	74_37	-1	known	missense	c.788	p.R263H	0.980	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161				46	0	0	30	18	37.5
FNDC3A	0	genome.wustl.edu	37	13	49781277	49781277	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	49781277	49781277	C	T	SNP	FNDC3A	ENST00000492622	human	ensembl	74_37	+1	known	missense	c.3343	p.R1115C	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC3A	HGNC	ENSG00000102531				83	0	0	62	32	34.0426
KPNA3	0	genome.wustl.edu	37	13	50296165	50296165	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	50296165	50296165	G	A	SNP	KPNA3	ENST00000261667	human	ensembl	74_37	-1	known	missense	c.652	p.R218W	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,pfam_HEAT,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA3	HGNC	ENSG00000102753				86	0	0	52	27	34.1772
CCDC70	0	genome.wustl.edu	37	13	52439720	52439720	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	52439720	52439720	T	C	SNP	CCDC70	ENST00000242819	human	ensembl	74_37	+1	known	missense	c.206	p.M69T	0.000	NULL	NULL	-	no_errors	CCDC70	HGNC	ENSG00000123171				101	0	0	53	30	36.1446
ATP7B	0	genome.wustl.edu	37	13	52513215	52513215	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	52513215	52513215	C	T	SNP	ATP7B	ENST00000242839	human	ensembl	74_37	-1	known	missense	c.3671	p.R1224Q	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7B	HGNC	ENSG00000123191				107	1	0.925926	53	31	36.9048
MRPS31P5	0	genome.wustl.edu	37	13	52742420	52742420	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	52742420	52742420	C	T	SNP	MRPS31P5	ENST00000416599	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.983	-	-	-	no_errors	MRPS31P5	HGNC	ENSG00000243406				44	0	0	33	28	45.9016
PCDH8	0	genome.wustl.edu	37	13	53421516	53421516	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	53421516	53421516	G	A	SNP	PCDH8	ENST00000377942	human	ensembl	74_37	-1	known	silent	c.1056	p.P352	0.086	smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH8	HGNC	ENSG00000136099				15	0	0	5	13	72.2222
PCDH17	0	genome.wustl.edu	37	13	58207236	58207236	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	58207236	58207236	C	T	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.556	p.R186C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				31	0	0	15	9	37.5
PCDH17	0	genome.wustl.edu	37	13	58298910	58298910	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	58298910	58298910	G	A	SNP	PCDH17	ENST00000377918	human	ensembl	74_37	+1	known	missense	c.2962	p.E988K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH17	HGNC	ENSG00000118946				62	0	0	29	27	48.2143
SLITRK1	0	genome.wustl.edu	37	13	84454612	84454612	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	84454612	84454612	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.1031	p.G344D	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				110	0	0	56	28	33.3333
SLITRK5	0	genome.wustl.edu	37	13	88330138	88330138	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	88330138	88330138	C	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.2495	p.A832V	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				18	0	0	20	9	31.0345
GPC5	0	genome.wustl.edu	37	13	92345484	92345484	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	92345484	92345484	T	C	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	silent	c.369	p.S123	0.992	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				69	0	0	37	23	38.3333
DOCK9	0	genome.wustl.edu	37	13	99520227	99520227	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	99520227	99520227	C	T	SNP	DOCK9	ENST00000339416	human	ensembl	74_37	-1	known	silent	c.3132	p.K1044	0.944	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK9	HGNC	ENSG00000088387				23	0	0	12	17	58.6207
DEGS2	0	genome.wustl.edu	37	14	100615484	100615484	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	100615484	100615484	A	C	SNP	DEGS2	ENST00000305631	human	ensembl	74_37	-1	known	missense	c.646	p.S216A	0.909	pfam_Fatty_acid_desaturase-1,pirsf_Sphingolipid_d4-desaturase	pfam_Fatty_acid_desaturase-1,pfam_Sphingolipid_d4-desaturase_N,pirsf_Sphingolipid_d4-desaturase	-	no_errors	DEGS2	HGNC	ENSG00000168350				106	0	0	47	30	38.961
WDR25	0	genome.wustl.edu	37	14	100992378	100992378	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	100992378	100992378	G	A	SNP	WDR25	ENST00000335290	human	ensembl	74_37	+1	known	splice_site	c.1272+1	e4+1	0.999	-	-	-	no_errors	WDR25	HGNC	ENSG00000176473				35	0	0	18	23	56.0976
RTL1	0	genome.wustl.edu	37	14	101347457	101347457	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	101347457	101347457	G	A	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	silent	c.3669	p.H1223	0.991	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656				9	0	0	5	5	50
DYNC1H1	0	genome.wustl.edu	37	14	102476662	102476662	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	102476662	102476662	C	T	SNP	DYNC1H1	ENST00000360184	human	ensembl	74_37	+1	known	missense	c.6271	p.R2091W	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Thioredoxin-like_fold,superfamily_Glutathione-S-Trfase_C-like,smart_AAA+_ATPase	-	no_errors	DYNC1H1	HGNC	ENSG00000197102				81	0	0	43	27	38.5714
EXOC3L4	0	genome.wustl.edu	37	14	103566847	103566847	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	103566847	103566847	C	T	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	silent	c.291	p.T97	0.000	NULL	pfam_Sec6	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				41	0	0	15	14	48.2759
EXOC3L4	0	genome.wustl.edu	37	14	103574001	103574001	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	103574001	103574001	C	T	SNP	EXOC3L4	ENST00000380069	human	ensembl	74_37	+1	known	missense	c.1735	p.R579C	0.983	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L4	HGNC	ENSG00000205436				8	0	0	1	4	80
EIF5	0	genome.wustl.edu	37	14	103803484	103803484	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	103803484	103803484	A	T	SNP	EIF5	ENST00000216554	human	ensembl	74_37	+1	known	missense	c.359	p.N120I	1.000	pfam_Transl_init_fac_IF2/IF5,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5	pfam_Transl_init_fac_IF2/IF5,pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Transl_init_fac_IF2/IF5_N,superfamily_Transl_init_fac_IF2/IF5_Zn-bd,smart_Transl_init_fac_IF2/IF5,smart_W2_domain	-	no_errors	EIF5	HGNC	ENSG00000100664				63	0	0	91	8	8.08081
MARK3	0	genome.wustl.edu	37	14	103934416	103934416	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	103934416	103934416	A	G	SNP	MARK3	ENST00000216288	human	ensembl	74_37	+1	known	splice_site	c.1111-2	e12-2	1.000	-	-	-	no_errors	MARK3	HGNC	ENSG00000075413				78	0	0	49	30	37.9747
C14orf180	0	genome.wustl.edu	37	14	105054178	105054178	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105054178	105054178	C	T	SNP	C14orf180	ENST00000410013	human	ensembl	74_37	+1	known	silent	c.204	p.R68	0.002	NULL	NULL	-	no_errors	C14orf180	HGNC	ENSG00000184601				25	0	0	13	6	31.5789
CEP170B	0	genome.wustl.edu	37	14	105352923	105352923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105352923	105352923	C	T	SNP	CEP170B	ENST00000453495	human	ensembl	74_37	+1	known	missense	c.2350	p.R784W	0.014	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	CEP170B	HGNC	ENSG00000099814				22	0	0	16	4	20
CDCA4	0	genome.wustl.edu	37	14	105478046	105478046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105478046	105478046	G	A	SNP	CDCA4	ENST00000336219	human	ensembl	74_37	-1	known	missense	c.221	p.T74M	1.000	pfscan_SERTA	pfam_SERTA,pfscan_SERTA	-	no_errors	CDCA4	HGNC	ENSG00000170779				58	0	0	39	27	40.9091
GPR132	0	genome.wustl.edu	37	14	105518286	105518286	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105518286	105518286	G	A	SNP	GPR132	ENST00000329797	human	ensembl	74_37	-1	known	missense	c.188	p.T63I	0.972	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_G2A_lysphc_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR132	HGNC	ENSG00000183484				83	0	0	44	28	38.8889
JAG2	0	genome.wustl.edu	37	14	105612833	105612833	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105612833	105612833	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	silent	c.2598	p.I866	0.008	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				79	0	0	30	28	48.2759
BTBD6	0	genome.wustl.edu	37	14	105716436	105716436	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	105716436	105716436	C	T	SNP	BTBD6	ENST00000392554	human	ensembl	74_37	+1	known	silent	c.885	p.N295	0.395	smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD6	HGNC	ENSG00000184887				133	0	0	68	30	30.6122
OR4K1	0	genome.wustl.edu	37	14	20404217	20404217	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	20404217	20404217	A	G	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	missense	c.392	p.H131R	0.084	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				125	0	0	114	35	23.4899
CHD8	0	genome.wustl.edu	37	14	21896280	21896280	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	21896280	21896280	C	T	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.1349	p.R450H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888				180	0	0	116	47	28.8344
TOX4	0	genome.wustl.edu	37	14	21961062	21961062	+	Silent	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	21961062	21961062	T	A	SNP	TOX4	ENST00000262709	human	ensembl	74_37	+1	known	silent	c.1287	p.A429	0.939	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TOX4	HGNC	ENSG00000092203				178	1	0.558659	115	84	42.2111
OR10G3	0	genome.wustl.edu	37	14	22038482	22038482	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	22038482	22038482	G	A	SNP	OR10G3	ENST00000303532	human	ensembl	74_37	-1	known	missense	c.394	p.R132C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208				48	0	0	31	15	32.6087
DHRS4-AS1	0	genome.wustl.edu	37	14	24422889	24422889	+	RNA	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	24422889	24422889	G	C	SNP	DHRS4-AS1	ENST00000553454	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DHRS4-AS1	HGNC	ENSG00000215256				17	0	0	5	15	75
FOXG1	0	genome.wustl.edu	37	14	29237391	29237391	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	29237391	29237391	C	T	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	silent	c.906	p.R302	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165				99	0	0	50	40	44.4444
PRKD1	0	genome.wustl.edu	37	14	30107951	30107951	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	30107951	30107951	A	G	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.856	p.Y286H	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_DAG/PE-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				42	0	0	27	16	37.2093
NPAS3	0	genome.wustl.edu	37	14	34269285	34269285	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	34269285	34269285	C	T	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.1772	p.A591V	0.995	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322				15	0	0	8	5	38.4615
SSTR1	0	genome.wustl.edu	37	14	38679518	38679518	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	38679518	38679518	G	A	SNP	SSTR1	ENST00000267377	human	ensembl	74_37	+1	known	silent	c.924	p.S308	0.533	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Opioid_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_1,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_NPY_rcpt,prints_Neuropept_B/W_rcpt	-	no_errors	SSTR1	HGNC	ENSG00000139874				96	0	0	60	55	47.8261
CTAGE5	0	genome.wustl.edu	37	14	39748655	39748655	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	39748655	39748655	C	T	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	nonsense	c.220	p.R74*	0.974	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				50	0	0	36	14	28
CTAGE5	0	genome.wustl.edu	37	14	39790150	39790150	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	39790150	39790150	C	A	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	missense	c.1577	p.P526H	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527				84	0	0	76	39	33.913
FBXO33	0	genome.wustl.edu	37	14	39871611	39871611	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	39871611	39871611	A	T	SNP	FBXO33	ENST00000298097	human	ensembl	74_37	-1	known	missense	c.704	p.I235N	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO33	HGNC	ENSG00000165355				47	0	0	41	18	30.5085
KLHL28	0	genome.wustl.edu	37	14	45414389	45414389	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45414389	45414389	C	T	SNP	KLHL28	ENST00000396128	human	ensembl	74_37	-1	known	missense	c.743	p.R248H	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454				70	0	0	47	24	33.8028
FAM179B	0	genome.wustl.edu	37	14	45431631	45431631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45431631	45431631	G	A	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.7	p.A3T	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				52	0	0	31	21	40.3846
FAM179B	0	genome.wustl.edu	37	14	45497410	45497410	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45497410	45497410	A	G	SNP	FAM179B	ENST00000361577	human	ensembl	74_37	+1	known	missense	c.3536	p.N1179S	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	FAM179B	HGNC	ENSG00000198718				41	0	0	51	7	12.069
FANCM	0	genome.wustl.edu	37	14	45605395	45605395	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45605395	45605395	A	G	SNP	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	missense	c.161	p.D54G	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790				92	0	0	40	36	47.3684
MIS18BP1	0	genome.wustl.edu	37	14	45693275	45693275	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45693275	45693275	C	T	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.2515	p.V839I	0.212	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				44	0	0	38	14	26.9231
MIS18BP1	0	genome.wustl.edu	37	14	45711515	45711515	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	45711515	45711515	T	C	SNP	MIS18BP1	ENST00000310806	human	ensembl	74_37	-1	known	missense	c.865	p.S289G	0.000	NULL	pfam_SANTA,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MIS18BP1	HGNC	ENSG00000129534				106	0	0	96	6	5.88235
FRMD6	0	genome.wustl.edu	37	14	52178272	52178272	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	52178272	52178272	G	A	SNP	FRMD6	ENST00000344768	human	ensembl	74_37	+1	known	silent	c.738	p.S246	0.558	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	-	no_errors	FRMD6	HGNC	ENSG00000139926				90	0	0	47	26	35.6164
PELI2	0	genome.wustl.edu	37	14	56645119	56645119	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	56645119	56645119	G	A	SNP	PELI2	ENST00000267460	human	ensembl	74_37	+1	known	silent	c.144	p.R48	0.572	pfam_Pellino_fam	pfam_Pellino_fam	-	no_errors	PELI2	HGNC	ENSG00000139946				75	0	0	55	41	42.7083
DAAM1	0	genome.wustl.edu	37	14	59789729	59789729	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	59789729	59789729	C	T	SNP	DAAM1	ENST00000351081	human	ensembl	74_37	+1	known	missense	c.560	p.A187V	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,superfamily_tRNA-bd_arm,smart_FH2_Formin	-	no_errors	DAAM1	HGNC	ENSG00000100592				61	0	0	34	21	38.1818
GPR135	0	genome.wustl.edu	37	14	59930994	59930994	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	59930994	59930994	G	A	SNP	GPR135	ENST00000395116	human	ensembl	74_37	-1	known	silent	c.951	p.Y317	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR135	HGNC	ENSG00000181619				45	0	0	21	16	43.2432
MTHFD1	0	genome.wustl.edu	37	14	64855117	64855117	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	64855117	64855117	C	T	SNP	MTHFD1	ENST00000545908	human	ensembl	74_37	+1	novel	missense	c.140	p.S47F	0.000	NULL	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1	HGNC	ENSG00000100714				89	0	0	47	21	30.8824
MAP3K9	0	genome.wustl.edu	37	14	71199761	71199761	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	71199761	71199761	G	A	SNP	MAP3K9	ENST00000555993	human	ensembl	74_37	-1	known	silent	c.2367	p.C789	1.000	pirsf_MAPKKK9/10/11	pirsf_MAPKKK9/10/11,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_Regulat_G_prot_signal_superfam,smart_SH3_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	MAP3K9	HGNC	ENSG00000006432				80	0	0	41	24	36.9231
PCNX	0	genome.wustl.edu	37	14	71444403	71444403	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	71444403	71444403	G	T	SNP	PCNX	ENST00000304743	human	ensembl	74_37	+1	known	missense	c.1349	p.S450I	0.994	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731				50	0	0	42	5	10.6383
C14orf169	0	genome.wustl.edu	37	14	73958888	73958888	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	73958888	73958888	C	T	SNP	C14orf169	ENST00000531973	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242				163	0	0	99	64	39.2638
HEATR4	0	genome.wustl.edu	37	14	73989186	73989186	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	73989186	73989186	C	T	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.671	p.R224Q	0.000	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				47	0	0	34	18	34.6154
LTBP2	0	genome.wustl.edu	37	14	74995223	74995223	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	74995223	74995223	C	T	SNP	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	silent	c.2331	p.T777	0.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				74	0	0	37	26	41.2698
IRF2BPL	0	genome.wustl.edu	37	14	77492225	77492225	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	77492225	77492225	C	T	SNP	IRF2BPL	ENST00000238647	human	ensembl	74_37	-1	known	silent	c.1911	p.A637	0.992	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BPL	HGNC	ENSG00000119669				35	0	0	18	11	37.931
ALKBH1	0	genome.wustl.edu	37	14	78174328	78174328	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	78174328	78174328	G	A	SNP	ALKBH1	ENST00000216489	human	ensembl	74_37	-1	known	missense	c.20	p.A7V	0.005	NULL	tigrfam_Alkb	-	no_errors	ALKBH1	HGNC	ENSG00000100601				68	0	0	36	29	44.6154
NRXN3	0	genome.wustl.edu	37	14	80328229	80328229	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	80328229	80328229	G	A	SNP	NRXN3	ENST00000335750	human	ensembl	74_37	+1	known	silent	c.3108	p.T1036	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645				21	0	0	22	15	40.5405
TSHR	0	genome.wustl.edu	37	14	81610526	81610526	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	81610526	81610526	G	A	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	silent	c.2124	p.G708	0.204	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409				132	0	0	72	47	39.4958
FOXN3	0	genome.wustl.edu	37	14	89878419	89878419	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	89878419	89878419	G	A	SNP	FOXN3	ENST00000261302	human	ensembl	74_37	-1	known	silent	c.402	p.R134	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXN3	HGNC	ENSG00000053254				124	0	0	70	38	35.1852
TTC7B	0	genome.wustl.edu	37	14	91142998	91142998	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	91142998	91142998	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	missense	c.1021	p.R341W	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914				79	0	0	49	27	35.5263
CCDC88C	0	genome.wustl.edu	37	14	91779774	91779774	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	91779774	91779774	G	A	SNP	CCDC88C	ENST00000389857	human	ensembl	74_37	-1	known	missense	c.2386	p.R796C	0.982	superfamily_Prefoldin	pfam_Hook-related_fam,superfamily_Prefoldin,superfamily_Fum_Rdtase/Succ_DH_flav-like_C	-	no_errors	CCDC88C	HGNC	ENSG00000015133				29	0	0	21	5	19.2308
FBLN5	0	genome.wustl.edu	37	14	92347755	92347755	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	92347755	92347755	G	A	SNP	FBLN5	ENST00000342058	human	ensembl	74_37	-1	known	silent	c.870	p.N290	0.995	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	pfam_EGF-like_Ca-bd_dom,superfamily_TIL_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	FBLN5	HGNC	ENSG00000140092				78	0	0	52	26	33.3333
FAM181A	0	genome.wustl.edu	37	14	94394791	94394791	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	94394791	94394791	C	T	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	missense	c.346	p.R116W	1.000	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067				47	0	0	21	19	47.5
LRRK1	0	genome.wustl.edu	37	15	101586241	101586241	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	101586241	101586241	C	T	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.3019	p.R1007W	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				122	0	0	84	41	32.8
LRRK1	0	genome.wustl.edu	37	15	101593491	101593491	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	101593491	101593491	A	C	SNP	LRRK1	ENST00000388948	human	ensembl	74_37	+1	known	missense	c.3920	p.E1307A	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Leu-rich_rpt,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,superfamily_WD40_repeat_dom,smart_Ankyrin_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom	-	no_errors	LRRK1	HGNC	ENSG00000154237				62	0	0	31	20	39.2157
DNM1P47	0	genome.wustl.edu	37	15	102294430	102294430	+	RNA	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	102294430	102294430	A	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				13	0	0	9	7	43.75
DNM1P47	0	genome.wustl.edu	37	15	102294443	102294443	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	102294443	102294443	A	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				12	0	0	9	7	43.75
HERC2P3	0	genome.wustl.edu	37	15	20644812	20644812	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	20644812	20644812	A	G	SNP	HERC2P3	ENST00000426501	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229				45	0	0	26	6	18.75
OR4M2	0	genome.wustl.edu	37	15	22369050	22369050	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	22369050	22369050	C	T	SNP	OR4M2	ENST00000332663	human	ensembl	74_37	+1	putative	nonsense	c.475	p.Q159*	0.999	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4M2	HGNC	ENSG00000182974				357	0	0	289	57	16.474
LOC101927079	0	genome.wustl.edu	37	15	22383431	22383431	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	22383431	22383431	G	A	SNP	LOC101927079	ENST00000558312	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-69H14.6	Clone_based_vega_gene	ENSG00000259176				45	0	0	33	5	13.1579
NIPA1	0	genome.wustl.edu	37	15	23049010	23049010	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	23049010	23049010	G	A	SNP	NIPA1	ENST00000337435	human	ensembl	74_37	-1	known	missense	c.809	p.T270M	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA	-	no_errors	NIPA1	HGNC	ENSG00000170113				35	0	0	24	15	38.4615
ATP10A	0	genome.wustl.edu	37	15	25925385	25925385	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	25925385	25925385	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.3749	p.A1250V	0.533	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				99	0	0	72	34	32.0755
ATP10A	0	genome.wustl.edu	37	15	25958891	25958891	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	25958891	25958891	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.2274	p.T758	0.001	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				63	0	0	40	19	32.2034
GABRA5	0	genome.wustl.edu	37	15	27188486	27188486	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	27188486	27188486	G	A	SNP	GABRA5	ENST00000335625	human	ensembl	74_37	+1	known	silent	c.1002	p.A334	0.079	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa5_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA5	HGNC	ENSG00000186297				16	0	0	5	3	37.5
HERC2	0	genome.wustl.edu	37	15	28437159	28437159	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	28437159	28437159	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.8399	p.R2800H	1.000	superfamily_Galactose-bd-like	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731				173	0	0	106	65	38.0117
CHRNA7	0	genome.wustl.edu	37	15	32460419	32460419	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	32460419	32460419	C	T	SNP	CHRNA7	ENST00000454250	human	ensembl	74_37	+1	known	silent	c.1356	p.G452	0.001	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA7	HGNC	ENSG00000175344				8	0	0	3	6	66.6667
RYR3	0	genome.wustl.edu	37	15	33858966	33858966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	33858966	33858966	C	T	SNP	RYR3	ENST00000389232	human	ensembl	74_37	+1	known	missense	c.1234	p.R412W	1.000	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838				97	0	0	55	24	30.3797
GOLGA8A	0	genome.wustl.edu	37	15	34673720	34673720	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	34673720	34673720	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	74_37	-1	known	silent	c.1794	p.V598	1.000	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265				130	0	0	131	23	14.9351
MEIS2	0	genome.wustl.edu	37	15	37375970	37375970	+	Splice_Site	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	37375970	37375970	A	G	SNP	MEIS2	ENST00000561208	human	ensembl	74_37	-1	known	splice_site	c.754+2	e7+2	1.000	-	-	-	no_errors	MEIS2	HGNC	ENSG00000134138				81	0	0	44	22	33.3333
PLCB2	0	genome.wustl.edu	37	15	40590816	40590816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	40590816	40590816	G	A	SNP	PLCB2	ENST00000260402	human	ensembl	74_37	-1	known	missense	c.944	p.T315M	0.593	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,prints_Pinositol_PLipase_C,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841				55	0	0	31	26	45.614
DISP2	0	genome.wustl.edu	37	15	40659533	40659533	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	40659533	40659533	C	T	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.1220	p.A407V	0.673	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				303	0	0	175	78	30.83
DISP2	0	genome.wustl.edu	37	15	40661144	40661144	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	40661144	40661144	G	A	SNP	DISP2	ENST00000267889	human	ensembl	74_37	+1	known	missense	c.2831	p.R944H	0.000	NULL	pfscan_SSD	-	no_errors	DISP2	HGNC	ENSG00000140323				135	0	0	72	44	37.931
RPAP1	0	genome.wustl.edu	37	15	41812993	41812993	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	41812993	41812993	G	A	SNP	RPAP1	ENST00000304330	human	ensembl	74_37	-1	known	missense	c.3391	p.R1131W	0.825	NULL	pfam_RNA_pol_II_AP1_C,pfam_RNA_pol_II_AP1_N,superfamily_ARM-type_fold	-	no_errors	RPAP1	HGNC	ENSG00000103932				48	0	0	36	27	42.8571
JMJD7-PLA2G4B	0	genome.wustl.edu	37	15	42139703	42139703	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	42139703	42139703	C	T	SNP	JMJD7-PLA2G4B	ENST00000382448	human	ensembl	74_37	+1	known	missense	c.2809	p.R937W	0.144	superfamily_Acyl_Trfase/lysoPLipase,smart_LysoPLipase_cat_dom,pfscan_LysoPLipase_cat_dom	pfam_LysoPLipase_cat_dom,pfam_C2_dom,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_dom,smart_JmjC_dom,smart_C2_dom,smart_LysoPLipase_cat_dom,pfscan_JmjC_dom,pfscan_C2_dom,pfscan_LysoPLipase_cat_dom	-	no_errors	JMJD7-PLA2G4B	HGNC	ENSG00000168970				101	1	0.980392	63	40	38.835
TMEM87A	0	genome.wustl.edu	37	15	42519917	42519917	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	42519917	42519917	A	G	SNP	TMEM87A	ENST00000389834	human	ensembl	74_37	-1	known	missense	c.1291	p.C431R	1.000	pfam_TM_rcpt_euk	pfam_TM_rcpt_euk	-	no_errors	TMEM87A	HGNC	ENSG00000103978				40	0	0	39	18	31.5789
ZNF106	0	genome.wustl.edu	37	15	42734448	42734448	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	42734448	42734448	C	T	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.3517	p.G1173R	0.527	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				80	0	0	49	39	44.3182
ZNF106	0	genome.wustl.edu	37	15	42743379	42743379	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	42743379	42743379	G	A	SNP	ZNF106	ENST00000263805	human	ensembl	74_37	-1	known	missense	c.1022	p.A341V	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_Znf_C2H2-like,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	ZNF106	HGNC	ENSG00000103994				87	0	0	97	6	5.82524
UBR1	0	genome.wustl.edu	37	15	43237587	43237587	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	43237587	43237587	C	T	SNP	UBR1	ENST00000290650	human	ensembl	74_37	-1	known	silent	c.5190	p.E1730	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR1	HGNC	ENSG00000159459				50	0	0	40	19	32.2034
CCNDBP1	0	genome.wustl.edu	37	15	43482524	43482524	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	43482524	43482524	C	A	SNP	CCNDBP1	ENST00000300213	human	ensembl	74_37	+1	known	missense	c.430	p.P144T	0.235	NULL	NULL	-	no_errors	CCNDBP1	HGNC	ENSG00000166946				45	0	0	28	19	40.4255
TUBGCP4	0	genome.wustl.edu	37	15	43692300	43692300	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	43692300	43692300	C	T	SNP	TUBGCP4	ENST00000260383	human	ensembl	74_37	+1	known	missense	c.1480	p.H494Y	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP4	HGNC	ENSG00000137822				45	0	0	27	15	35.7143
CATSPER2P1	0	genome.wustl.edu	37	15	44020984	44020984	+	RNA	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	44020984	44020984	G	C	SNP	CATSPER2P1	ENST00000446479	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.997	-	-	-	no_errors	CATSPER2P1	HGNC	ENSG00000205771				35	0	0	17	22	56.4103
DUOX2	0	genome.wustl.edu	37	15	45399615	45399615	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	45399615	45399615	G	A	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	missense	c.1621	p.R541W	0.321	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				125	0	0	64	43	40.1869
DUOX2	0	genome.wustl.edu	37	15	45404879	45404879	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	45404879	45404879	G	T	SNP	DUOX2	ENST00000389039	human	ensembl	74_37	-1	known	silent	c.198	p.A66	0.008	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF_hand_dom,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr,prints_Recoverin	-	no_errors	DUOX2	HGNC	ENSG00000140279				106	0	0	64	32	33.3333
BLOC1S6	0	genome.wustl.edu	37	15	45884368	45884368	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	45884368	45884368	G	A	SNP	BLOC1S6	ENST00000220531	human	ensembl	74_37	+1	known	missense	c.118	p.E40K	0.998	pirsf_BLOC-1_pallidin	pirsf_BLOC-1_pallidin	-	no_errors	BLOC1S6	HGNC	ENSG00000104164				60	0	0	41	24	36.9231
CEP152	0	genome.wustl.edu	37	15	49048167	49048167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	49048167	49048167	C	T	SNP	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	missense	c.3278	p.C1093Y	1.000	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995				141	0	0	77	42	35.2941
CYP19A1	0	genome.wustl.edu	37	15	51503148	51503148	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	51503148	51503148	G	A	SNP	CYP19A1	ENST00000260433	human	ensembl	74_37	-1	known	nonsense	c.1369	p.R457*	0.992	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP19A1	HGNC	ENSG00000137869				79	0	0	53	31	36.9048
MYO5C	0	genome.wustl.edu	37	15	52556467	52556467	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	52556467	52556467	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	missense	c.967	p.V323I	0.935	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833				45	0	0	30	13	30.2326
UNC13C	0	genome.wustl.edu	37	15	54786877	54786877	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	54786877	54786877	A	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	missense	c.5005	p.N1669H	1.000	NULL	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				97	0	0	68	38	35.8491
UNC13C	0	genome.wustl.edu	37	15	54916051	54916051	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	54916051	54916051	A	G	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.6258	p.E2086	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				37	0	0	30	17	36.1702
SLTM	0	genome.wustl.edu	37	15	59181694	59181694	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	59181694	59181694	T	C	SNP	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	silent	c.2139	p.Q713	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				76	0	0	36	28	43.75
TLN2	0	genome.wustl.edu	37	15	63000909	63000909	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	63000909	63000909	G	A	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.2381	p.R794Q	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914				69	0	0	25	24	48.9796
USP3	0	genome.wustl.edu	37	15	63824852	63824852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	63824852	63824852	G	A	SNP	USP3	ENST00000380324	human	ensembl	74_37	+1	known	missense	c.98	p.R33Q	1.000	pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP3	HGNC	ENSG00000140455				89	0	0	48	37	43.5294
SMAD3	0	genome.wustl.edu	37	15	67473668	67473668	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	67473668	67473668	G	A	SNP	SMAD3	ENST00000327367	human	ensembl	74_37	+1	known	missense	c.748	p.A250T	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD3	HGNC	ENSG00000166949				48	0	0	31	23	42.5926
SKOR1	0	genome.wustl.edu	37	15	68122574	68122574	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	68122574	68122574	C	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.2453	p.T818M	0.994	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				60	0	0	30	22	42.3077
PKM	0	genome.wustl.edu	37	15	72511345	72511345	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	72511345	72511345	G	A	SNP	PKM	ENST00000319622	human	ensembl	74_37	-1	known	missense	c.94	p.R32C	1.000	superfamily_Pyrv/PenolPyrv_Kinase-like_dom	pfam_Pyrv_Knase_brl,pfam_Pyrv_Knase_C,superfamily_Pyrv/PenolPyrv_Kinase-like_dom,superfamily_Pyrv_Knase_C,superfamily_Pyrv_Knase-like_insert_dom,prints_Pyr_Knase,tigrfam_Pyr_Knase	-	no_errors	PKM	HGNC	ENSG00000067225				61	0	0	41	30	42.2535
NEO1	0	genome.wustl.edu	37	15	73581529	73581529	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	73581529	73581529	G	T	SNP	NEO1	ENST00000261908	human	ensembl	74_37	+1	known	missense	c.3692	p.R1231L	0.999	pfam_Neogenin_C	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NEO1	HGNC	ENSG00000067141				41	0	0	20	16	44.4444
CD276	0	genome.wustl.edu	37	15	73994653	73994653	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	73994653	73994653	C	T	SNP	CD276	ENST00000318443	human	ensembl	74_37	+1	known	missense	c.137	p.A46V	1.000	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	CD276	HGNC	ENSG00000103855				40	0	0	28	2	6.66667
LOXL1	0	genome.wustl.edu	37	15	74235272	74235272	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	74235272	74235272	C	T	SNP	LOXL1	ENST00000261921	human	ensembl	74_37	+1	known	missense	c.1180	p.R394C	1.000	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	-	no_errors	LOXL1	HGNC	ENSG00000129038				189	0	0	150	10	6.25
GOLGA6A	0	genome.wustl.edu	37	15	74367334	74367334	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	74367334	74367334	G	T	SNP	GOLGA6A	ENST00000290438	human	ensembl	74_37	-1	known	missense	c.856	p.P286T	0.011	NULL	NULL	-	no_errors	GOLGA6A	HGNC	ENSG00000159289				72	0	0	88	18	16.9811
ISLR	0	genome.wustl.edu	37	15	74468067	74468067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	74468067	74468067	C	T	SNP	ISLR	ENST00000249842	human	ensembl	74_37	+1	known	missense	c.868	p.R290C	0.004	pfam_Ig_I-set,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Leu-rich_rpt,pfam_Ig_I-set,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	ISLR	HGNC	ENSG00000129009				171	0	0	85	44	34.1085
CCDC33	0	genome.wustl.edu	37	15	74627335	74627335	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	74627335	74627335	G	A	SNP	CCDC33	ENST00000321288	human	ensembl	74_37	+1	known	missense	c.2756	p.R919H	0.997	NULL	pfam_C2_dom,superfamily_C2_dom	-	no_errors	CCDC33	HGNC	ENSG00000140481				106	0	0	66	29	30.5263
CLK3	0	genome.wustl.edu	37	15	74911553	74911553	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	74911553	74911553	C	T	SNP	CLK3	ENST00000395066	human	ensembl	74_37	+1	known	nonsense	c.460	p.R154*	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CLK3	HGNC	ENSG00000179335				141	0	0	85	64	42.953
CSK	0	genome.wustl.edu	37	15	75094779	75094779	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	75094779	75094779	C	T	SNP	CSK	ENST00000220003	human	ensembl	74_37	+1	known	silent	c.1278	p.D426	0.021	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	CSK	HGNC	ENSG00000103653				152	0	0	70	36	33.9623
SIN3A	0	genome.wustl.edu	37	15	75664484	75664484	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	75664484	75664484	C	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	nonsense	c.3658	p.E1220*	1.000	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375				159	0	0	83	46	35.6589
SNX33	0	genome.wustl.edu	37	15	75949393	75949393	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	75949393	75949393	G	A	SNP	SNX33	ENST00000308527	human	ensembl	74_37	+1	known	missense	c.1562	p.R521H	0.995	pfam_Sorting_nexin_WASP-bd-dom,pirsf_Snx9	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX33	HGNC	ENSG00000173548				60	0	0	40	37	48.0519
CHRNB4	0	genome.wustl.edu	37	15	78921324	78921324	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	78921324	78921324	G	A	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	silent	c.1323	p.D441	0.045	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971				46	0	0	26	25	49.0196
CTSH	0	genome.wustl.edu	37	15	79227367	79227367	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	79227367	79227367	C	T	SNP	CTSH	ENST00000220166	human	ensembl	74_37	-1	known	missense	c.358	p.V120M	0.012	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSH	HGNC	ENSG00000103811				77	0	0	70	4	5.40541
KIAA1024	0	genome.wustl.edu	37	15	79760622	79760622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	79760622	79760622	G	A	SNP	KIAA1024	ENST00000305428	human	ensembl	74_37	+1	known	missense	c.2647	p.E883K	0.989	pfam_UPF0258	pfam_UPF0258	-	no_errors	KIAA1024	HGNC	ENSG00000169330				36	0	0	15	10	40
FSD2	0	genome.wustl.edu	37	15	83451559	83451559	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	83451559	83451559	C	A	SNP	FSD2	ENST00000334574	human	ensembl	74_37	-1	known	silent	c.954	p.V318	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD2	HGNC	ENSG00000186628				166	1	0.598802	131	49	27.2222
TM6SF1	0	genome.wustl.edu	37	15	83776556	83776556	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	83776556	83776556	G	A	SNP	TM6SF1	ENST00000564988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	TM6SF1	HGNC	ENSG00000136404				17	0	0	11	3	21.4286
AKAP13	0	genome.wustl.edu	37	15	86205628	86205628	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	86205628	86205628	G	A	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	nonsense	c.4755	p.W1585*	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				140	0	0	98	61	38.3648
AEN	0	genome.wustl.edu	37	15	89169555	89169555	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	89169555	89169555	C	T	SNP	AEN	ENST00000379231	human	ensembl	74_37	+1	known	missense	c.115	p.R39W	0.983	NULL	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	AEN	HGNC	ENSG00000181026				29	0	0	12	6	33.3333
RLBP1	0	genome.wustl.edu	37	15	89754024	89754024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	89754024	89754024	C	T	SNP	RLBP1	ENST00000268125	human	ensembl	74_37	-1	known	missense	c.701	p.R234Q	1.000	pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran,pfscan_CRAL-TRIO_dom	-	no_errors	RLBP1	HGNC	ENSG00000140522				14	0	0	1	7	87.5
FANCI	0	genome.wustl.edu	37	15	89848426	89848426	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	89848426	89848426	C	T	SNP	FANCI	ENST00000310775	human	ensembl	74_37	+1	known	missense	c.3139	p.R1047C	0.952	NULL	NULL	-	no_errors	FANCI	HGNC	ENSG00000140525				130	0	0	63	40	38.835
TICRR	0	genome.wustl.edu	37	15	90169247	90169247	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	90169247	90169247	C	T	SNP	TICRR	ENST00000268138	human	ensembl	74_37	+1	known	silent	c.5557	p.L1853	1.000	NULL	NULL	-	no_errors	TICRR	HGNC	ENSG00000140534				60	0	0	43	20	31.746
ANPEP	0	genome.wustl.edu	37	15	90349232	90349232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	90349232	90349232	G	A	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.583	p.R195C	1.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				106	0	0	74	36	32.7273
CRTC3	0	genome.wustl.edu	37	15	91185350	91185350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	91185350	91185350	C	T	SNP	CRTC3	ENST00000268184	human	ensembl	74_37	+1	known	missense	c.1838	p.T613M	0.500	NULL	NULL	-	no_errors	CRTC3	HGNC	ENSG00000140577				70	0	0	38	22	36.6667
BLM	0	genome.wustl.edu	37	15	91312684	91312684	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	91312684	91312684	G	A	SNP	BLM	ENST00000355112	human	ensembl	74_37	+1	known	missense	c.2423	p.R808H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				89	0	0	48	50	51.0204
PRC1	0	genome.wustl.edu	37	15	91528045	91528045	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	91528045	91528045	C	T	SNP	PRC1	ENST00000394249	human	ensembl	74_37	-1	known	missense	c.22	p.A8T	1.000	NULL	pfam_MAP65_Ase1_PRC1	-	no_errors	PRC1	HGNC	ENSG00000198901				99	0	0	62	37	37.3737
MCTP2	0	genome.wustl.edu	37	15	94901823	94901823	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	94901823	94901823	A	G	SNP	MCTP2	ENST00000357742	human	ensembl	74_37	+1	known	missense	c.1283	p.H428R	0.436	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	MCTP2	HGNC	ENSG00000140563				48	0	0	27	15	35.7143
IGF1R	0	genome.wustl.edu	37	15	99500322	99500322	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	99500322	99500322	A	G	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.3755	p.N1252S	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443				108	0	0	54	34	38.6364
TXNDC11	0	genome.wustl.edu	37	16	11829888	11829888	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	11829888	11829888	A	G	SNP	TXNDC11	ENST00000356957	human	ensembl	74_37	-1	known	silent	c.456	p.S152	0.021	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC11	HGNC	ENSG00000153066				81	0	0	85	5	5.55556
RSL1D1	0	genome.wustl.edu	37	16	11933615	11933615	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	11933615	11933615	G	A	SNP	RSL1D1	ENST00000571133	human	ensembl	74_37	-1	known	silent	c.1083	p.S361	0.008	NULL	pfam_Ribosomal_L1/biogenesis,superfamily_Ribosomal_L1-like	-	no_errors	RSL1D1	HGNC	ENSG00000171490				184	0	0	103	58	36.0248
CACNA1H	0	genome.wustl.edu	37	16	1270618	1270618	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1270618	1270618	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.6686	p.R2229K	1.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				16	0	0	12	8	40
BAIAP3	0	genome.wustl.edu	37	16	1395258	1395258	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1395258	1395258	G	A	SNP	BAIAP3	ENST00000324385	human	ensembl	74_37	+1	known	missense	c.2054	p.R685H	0.794	NULL	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	BAIAP3	HGNC	ENSG00000007516				133	0	0	48	43	47.2527
GNPTG	0	genome.wustl.edu	37	16	1412311	1412311	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1412311	1412311	C	T	SNP	GNPTG	ENST00000204679	human	ensembl	74_37	+1	known	silent	c.516	p.H172	0.671	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	GNPTG	HGNC	ENSG00000090581				47	0	0	21	21	50
PKD1P6	0	genome.wustl.edu	37	16	15224285	15224285	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15224285	15224285	C	T	SNP	PKD1P6	ENST00000424133	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	PKD1P6	HGNC	ENSG00000250251				14	0	0	8	9	52.9412
ENSG00000270580	0	genome.wustl.edu	37	16	15225424	15225424	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15225424	15225424	C	T	SNP	ENSG00000270580	ENST00000605794	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1186N24.5	Clone_based_vega_gene	ENSG00000270580				35	0	0	23	7	23.3333
NPIPA5	0	genome.wustl.edu	37	16	15457624	15457624	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15457624	15457624	G	T	SNP	NPIPA5	ENST00000360151	human	ensembl	74_37	-1	novel	silent	c.945	p.P315	0.000	NULL	NULL	-	no_errors	NPIPA5	HGNC	ENSG00000183793				75	0	0	42	33	44
IFT140	0	genome.wustl.edu	37	16	1561152	1561152	+	Splice_Site	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1561152	1561152	C	A	SNP	IFT140	ENST00000426508	human	ensembl	74_37	-1	known	splice_site	c.4183-1	e29-1	1.000	-	-	-	no_errors	IFT140	HGNC	ENSG00000187535				17	0	0	11	3	21.4286
KIAA0430	0	genome.wustl.edu	37	16	15710928	15710928	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15710928	15710928	C	T	SNP	KIAA0430	ENST00000396368	human	ensembl	74_37	-1	known	missense	c.3058	p.G1020S	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783				97	0	0	51	36	41.3793
MYH11	0	genome.wustl.edu	37	16	15847322	15847322	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15847322	15847322	G	A	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.1814	p.P605L	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392				80	0	0	48	22	31.4286
ABCC1	0	genome.wustl.edu	37	16	16200615	16200615	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	16200615	16200615	C	A	SNP	ABCC1	ENST00000399408	human	ensembl	74_37	+1	known	missense	c.2786	p.S929Y	0.994	tigrfam_Multidrug-R_assoc	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_Multidrug-R_assoc	-	no_errors	ABCC1	HGNC	ENSG00000103222				75	0	0	46	32	41.0256
IGFALS	0	genome.wustl.edu	37	16	1841250	1841250	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1841250	1841250	C	T	SNP	IGFALS	ENST00000415638	human	ensembl	74_37	-1	known	missense	c.1283	p.S428N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	IGFALS	HGNC	ENSG00000099769				42	0	0	35	20	36.3636
RPL3L	0	genome.wustl.edu	37	16	1996656	1996656	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1996656	1996656	G	A	SNP	RPL3L	ENST00000268661	human	ensembl	74_37	-1	known	silent	c.921	p.Y307	0.432	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	pfam_Ribosomal_L3,superfamily_Transl_B-barrel	-	no_errors	RPL3L	HGNC	ENSG00000140986				68	0	0	37	25	40.3226
GPR139	0	genome.wustl.edu	37	16	20084857	20084857	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	20084857	20084857	C	T	SNP	GPR139	ENST00000570682	human	ensembl	74_37	-1	known	missense	c.82	p.V28M	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR139	HGNC	ENSG00000180269				28	0	0	8	7	46.6667
PDILT	0	genome.wustl.edu	37	16	20380898	20380898	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	20380898	20380898	G	A	SNP	PDILT	ENST00000302451	human	ensembl	74_37	-1	known	silent	c.1032	p.D344	0.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340				150	0	0	88	64	42.1053
CASKIN1	0	genome.wustl.edu	37	16	2228903	2228903	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	2228903	2228903	C	T	SNP	CASKIN1	ENST00000343516	human	ensembl	74_37	-1	known	missense	c.4199	p.R1400H	0.331	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN1	HGNC	ENSG00000167971				10	0	0	3	4	57.1429
NPIPB5	0	genome.wustl.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	22545865	22545865	G	C	SNP	NPIPB5	ENST00000424340	human	ensembl	74_37	+1	known	missense	c.1561	p.A521P	0.003	NULL	NULL	-	no_errors	NPIPB5	HGNC	ENSG00000243716				318	1	0.31348	319	48	13.079
HS3ST2	0	genome.wustl.edu	37	16	22826228	22826228	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	22826228	22826228	C	T	SNP	HS3ST2	ENST00000261374	human	ensembl	74_37	+1	known	silent	c.297	p.S99	0.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST2	HGNC	ENSG00000122254				17	0	0	7	4	36.3636
ABCA3	0	genome.wustl.edu	37	16	2328359	2328359	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	2328359	2328359	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.4648	p.R1550W	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				81	0	0	50	34	40.4762
ABCA3	0	genome.wustl.edu	37	16	2349441	2349441	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	2349441	2349441	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.1704	p.N568	0.548	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972				125	0	0	112	7	5.88235
ERN2	0	genome.wustl.edu	37	16	23713538	23713538	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	23713538	23713538	G	A	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	silent	c.1282	p.L428	0.014	NULL	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				150	0	0	83	42	33.6
ERN2	0	genome.wustl.edu	37	16	23716327	23716327	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	23716327	23716327	G	A	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.875	p.P292L	1.000	NULL	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				86	0	0	45	27	37.5
PRKCB	0	genome.wustl.edu	37	16	24192209	24192209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	24192209	24192209	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	missense	c.1493	p.T498I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501				100	0	0	61	38	38.3838
RBBP6	0	genome.wustl.edu	37	16	24582742	24582742	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	24582742	24582742	C	T	SNP	RBBP6	ENST00000319715	human	ensembl	74_37	+1	known	missense	c.4355	p.T1452M	0.889	NULL	pfam_DWNN_domain,pfam_Ubox_domain,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_Znf_RING,pfscan_Znf_RING,pfscan_Znf_CCHC	-	no_errors	RBBP6	HGNC	ENSG00000122257				53	0	0	41	20	32.7869
GTF3C1	0	genome.wustl.edu	37	16	27561201	27561201	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	27561201	27561201	A	G	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	missense	c.11	p.L4P	0.995	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235				44	0	0	16	11	40.7407
PRSS21	0	genome.wustl.edu	37	16	2871046	2871046	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	2871046	2871046	G	A	SNP	PRSS21	ENST00000005995	human	ensembl	74_37	+1	known	missense	c.641	p.R214H	0.003	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS21	HGNC	ENSG00000007038				352	0	0	177	108	37.8947
CD19	0	genome.wustl.edu	37	16	28948671	28948671	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	28948671	28948671	C	T	SNP	CD19	ENST00000538922	human	ensembl	74_37	+1	known	silent	c.1278	p.N426	0.014	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD19	HGNC	ENSG00000177455				50	0	0	33	23	41.0714
NFATC2IP	0	genome.wustl.edu	37	16	28967620	28967620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	28967620	28967620	C	T	SNP	NFATC2IP	ENST00000320805	human	ensembl	74_37	+1	known	missense	c.808	p.R270C	0.993	smart_Ubiquitin_dom	pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	NFATC2IP	HGNC	ENSG00000176953				40	0	0	28	14	33.3333
SEZ6L2	0	genome.wustl.edu	37	16	29884960	29884960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	29884960	29884960	C	T	SNP	SEZ6L2	ENST00000308713	human	ensembl	74_37	-1	known	missense	c.2195	p.R732H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L2	HGNC	ENSG00000174938				40	0	0	26	20	43.4783
TAOK2	0	genome.wustl.edu	37	16	29997691	29997691	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	29997691	29997691	C	T	SNP	TAOK2	ENST00000308893	human	ensembl	74_37	+1	known	missense	c.2098	p.R700C	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK2	HGNC	ENSG00000149930				71	0	0	43	33	43.4211
ZNF689	0	genome.wustl.edu	37	16	30616334	30616334	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30616334	30616334	G	A	SNP	ZNF689	ENST00000287461	human	ensembl	74_37	-1	known	missense	c.754	p.R252W	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF689	HGNC	ENSG00000156853				96	0	0	52	30	36.5854
PHKG2	0	genome.wustl.edu	37	16	30767987	30767987	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30767987	30767987	G	A	SNP	PHKG2	ENST00000563588	human	ensembl	74_37	+1	known	missense	c.878	p.R293H	0.997	superfamily_Kinase-like_dom,prints_Phosph_kin_gamma	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Phosph_kin_gamma,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PHKG2	HGNC	ENSG00000156873				101	0	0	49	32	39.5062
ZNF646	0	genome.wustl.edu	37	16	31089180	31089180	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	31089180	31089180	G	A	SNP	ZNF646	ENST00000300850	human	ensembl	74_37	+1	known	missense	c.1535	p.R512Q	0.415	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395				37	0	0	25	4	13.7931
KAT8	0	genome.wustl.edu	37	16	31131804	31131804	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	31131804	31131804	G	A	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.431	p.R144H	1.000	superfamily_Chromodomain-like	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				38	0	0	17	11	39.2857
PRSS36	0	genome.wustl.edu	37	16	31154777	31154777	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	31154777	31154777	G	T	SNP	PRSS36	ENST00000268281	human	ensembl	74_37	-1	known	missense	c.986	p.P329Q	0.000	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_polyserase-2,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	PRSS36	HGNC	ENSG00000178226				72	0	0	26	19	42.2222
ITGAM	0	genome.wustl.edu	37	16	31309156	31309156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	31309156	31309156	G	A	SNP	ITGAM	ENST00000544665	human	ensembl	74_37	+1	known	missense	c.1591	p.V531I	0.957	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGAM	HGNC	ENSG00000169896				87	0	0	61	38	38.3838
ITFG3	0	genome.wustl.edu	37	16	314628	314628	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	314628	314628	C	T	SNP	ITFG3	ENST00000301678	human	ensembl	74_37	+1	known	missense	c.1360	p.R454W	0.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	ITFG3	HGNC	ENSG00000167930				59	0	0	29	19	39.5833
NLRC3	0	genome.wustl.edu	37	16	3613868	3613868	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	3613868	3613868	G	A	SNP	NLRC3	ENST00000448023	human	ensembl	74_37	-1	known	missense	c.1211	p.P404L	0.989	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRC3	HGNC	ENSG00000167984				77	0	0	35	19	35.1852
CREBBP	0	genome.wustl.edu	37	16	3828769	3828769	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	3828769	3828769	G	A	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.1873	p.R625C	1.000	pfam_KIX_dom,superfamily_KIX_dom,pfscan_KIX_dom	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				174	0	0	75	62	45.2555
LOC100134368	0	genome.wustl.edu	37	16	436734	436734	+	RNA	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	436734	436734	A	C	SNP	LOC100134368	ENST00000457760	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.521	-	-	-	no_errors	Z97634.3	Clone_based_vega_gene	ENSG00000236829				32	0	0	15	6	28.5714
VASN	0	genome.wustl.edu	37	16	4432309	4432309	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	4432309	4432309	C	T	SNP	VASN	ENST00000304735	human	ensembl	74_37	+1	known	silent	c.1431	p.R477	0.001	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	VASN	HGNC	ENSG00000168140				29	0	0	12	6	33.3333
N4BP1	0	genome.wustl.edu	37	16	48585361	48585361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	48585361	48585361	C	T	SNP	N4BP1	ENST00000262384	human	ensembl	74_37	-1	known	missense	c.2053	p.G685R	0.993	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	N4BP1	HGNC	ENSG00000102921				152	0	0	78	52	40
GLYR1	0	genome.wustl.edu	37	16	4862113	4862113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	4862113	4862113	G	A	SNP	GLYR1	ENST00000321919	human	ensembl	74_37	-1	known	missense	c.1256	p.A419V	1.000	pfam_6PGDH_NADP-bd	pfam_6PGDH_NADP-bd,pfam_PWWP_dom,superfamily_6-PGluconate_DH_C-like,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	GLYR1	HGNC	ENSG00000140632				47	0	0	34	25	42.3729
SNX20	0	genome.wustl.edu	37	16	50707922	50707922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	50707922	50707922	G	A	SNP	SNX20	ENST00000330943	human	ensembl	74_37	-1	known	missense	c.346	p.R116C	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX20	HGNC	ENSG00000167208				64	0	0	44	24	35.2941
CYLD	0	genome.wustl.edu	37	16	50826538	50826538	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	50826538	50826538	C	T	SNP	CYLD	ENST00000311559	human	ensembl	74_37	+1	known	nonsense	c.2272	p.R758*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_CAP-Gly_domain,pfam_Peptidase_C19/C67,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain,pfscan_Peptidase_C19/C67	-	no_errors	CYLD	HGNC	ENSG00000083799				22	0	0	13	6	31.5789
RBL2	0	genome.wustl.edu	37	16	53501054	53501054	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	53501054	53501054	C	T	SNP	RBL2	ENST00000262133	human	ensembl	74_37	+1	known	missense	c.1948	p.R650C	1.000	NULL	pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RBL2	HGNC	ENSG00000103479				152	0	0	86	56	39.4366
MMP2	0	genome.wustl.edu	37	16	55522591	55522591	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	55522591	55522591	C	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	silent	c.969	p.Y323	0.917	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245				24	0	0	6	5	45.4545
FAM192A	0	genome.wustl.edu	37	16	57201038	57201038	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	57201038	57201038	G	A	SNP	FAM192A	ENST00000309137	human	ensembl	74_37	-1	known	missense	c.449	p.A150V	1.000	NULL	pfam_Nefa_Nip30_N	-	no_errors	FAM192A	HGNC	ENSG00000172775				152	0	0	88	64	42.1053
CNGB1	0	genome.wustl.edu	37	16	57935308	57935308	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	57935308	57935308	A	G	SNP	CNGB1	ENST00000251102	human	ensembl	74_37	-1	known	missense	c.2924	p.L975P	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGB1	HGNC	ENSG00000070729				132	0	0	89	43	32.5758
E2F4	0	genome.wustl.edu	37	16	67229829	67229829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67229829	67229829	G	A	SNP	E2F4	ENST00000379378	human	ensembl	74_37	+1	known	missense	c.953	p.S318N	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250				110	1	0.900901	77	12	13.4831
TPPP3	0	genome.wustl.edu	37	16	67424238	67424238	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67424238	67424238	G	A	SNP	TPPP3	ENST00000290942	human	ensembl	74_37	-1	known	missense	c.370	p.R124W	1.000	pfam_P25-alpha	pfam_P25-alpha	-	no_errors	TPPP3	HGNC	ENSG00000159713				192	0	0	90	80	47.0588
HSD11B2	0	genome.wustl.edu	37	16	67470747	67470747	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67470747	67470747	C	T	SNP	HSD11B2	ENST00000326152	human	ensembl	74_37	+1	known	silent	c.1059	p.Y353	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH	-	no_errors	HSD11B2	HGNC	ENSG00000176387				193	0	0	88	55	38.4615
CTCF	0	genome.wustl.edu	37	16	67670706	67670706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67670706	67670706	C	T	SNP	CTCF	ENST00000264010	human	ensembl	74_37	+1	known	missense	c.1951	p.R651W	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974				254	0	0	161	61	27.4775
CENPT	0	genome.wustl.edu	37	16	67865197	67865197	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67865197	67865197	G	A	SNP	CENPT	ENST00000219172	human	ensembl	74_37	-1	known	missense	c.625	p.R209C	0.998	NULL	superfamily_Histone-fold	-	no_errors	CENPT	HGNC	ENSG00000102901				65	0	0	30	19	38.7755
WFIKKN1	0	genome.wustl.edu	37	16	683935	683935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	683935	683935	G	A	SNP	WFIKKN1	ENST00000319070	human	ensembl	74_37	+1	known	missense	c.1525	p.D509N	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_WAP-type_4-diS_core,pfam_Kazal_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like_dom,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578				12	0	0	7	3	30
SMPD3	0	genome.wustl.edu	37	16	68395144	68395144	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	68395144	68395144	G	A	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	nonsense	c.1933	p.R645*	1.000	superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				26	0	0	9	15	62.5
SMPD3	0	genome.wustl.edu	37	16	68405487	68405487	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	68405487	68405487	C	T	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.598	p.V200I	0.004	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056				25	0	0	19	15	44.1176
CDH3	0	genome.wustl.edu	37	16	68713830	68713830	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	68713830	68713830	C	T	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.820	p.R274W	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038				84	0	0	38	32	45.7143
TANGO6	0	genome.wustl.edu	37	16	68941412	68941412	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	68941412	68941412	C	T	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	silent	c.1734	p.L578	0.275	pfam_DUF2435,superfamily_ARM-type_fold	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047				41	0	0	41	27	39.7059
TANGO6	0	genome.wustl.edu	37	16	69117396	69117396	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	69117396	69117396	C	T	SNP	TANGO6	ENST00000261778	human	ensembl	74_37	+1	known	silent	c.3117	p.S1039	0.493	superfamily_ARM-type_fold	pfam_DUF2435,pfam_DUF2411,superfamily_ARM-type_fold	-	no_errors	TANGO6	HGNC	ENSG00000103047				19	0	0	10	6	37.5
RHOT2	0	genome.wustl.edu	37	16	720697	720697	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	720697	720697	C	T	SNP	RHOT2	ENST00000315082	human	ensembl	74_37	+1	known	missense	c.563	p.A188V	0.995	pirsf_Rho_GTPase_Mt,superfamily_P-loop_NTPase	pirsf_Rho_GTPase_Mt,pfam_EF_hand_assoc_2,pfam_MIRO-like,pfam_EF_hand_assoc_1,pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,pfscan_EF_hand_dom	-	no_errors	RHOT2	HGNC	ENSG00000140983				143	0	0	75	42	35.8974
DHX38	0	genome.wustl.edu	37	16	72141380	72141380	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	72141380	72141380	G	A	SNP	DHX38	ENST00000268482	human	ensembl	74_37	+1	known	silent	c.2742	p.P914	0.141	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX38	HGNC	ENSG00000140829				43	0	0	26	15	36.5854
ZFHX3	0	genome.wustl.edu	37	16	72831391	72831391	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	72831391	72831391	T	C	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.5190	p.Q1730	0.993	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				30	0	0	32	2	5.88235
TMEM231	0	genome.wustl.edu	37	16	75579361	75579361	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	75579361	75579361	C	T	SNP	TMEM231	ENST00000570006	human	ensembl	74_37	-1	known	missense	c.433	p.V145I	0.005	NULL	pfam_TMEM231	-	no_errors	TMEM231	HGNC	ENSG00000205084				65	0	0	43	25	36.7647
CNTNAP4	0	genome.wustl.edu	37	16	76528929	76528929	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	76528929	76528929	T	C	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.2200	p.Y734H	0.954	NULL	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				157	0	0	90	43	32.3308
ADAMTS18	0	genome.wustl.edu	37	16	77369733	77369733	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	77369733	77369733	G	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	silent	c.1779	p.S593	0.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873				217	1	0.458716	133	79	37.2642
MBTPS1	0	genome.wustl.edu	37	16	84129294	84129294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	84129294	84129294	G	A	SNP	MBTPS1	ENST00000343411	human	ensembl	74_37	-1	known	missense	c.538	p.H180Y	1.000	superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	MBTPS1	HGNC	ENSG00000140943				157	0	0	83	61	42.3611
ENSG00000261286	0	genome.wustl.edu	37	16	84493038	84493038	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	84493038	84493038	C	T	SNP	ENSG00000261286	ENST00000565700	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-517C16.2	Clone_based_vega_gene	ENSG00000261286				38	0	0	20	12	37.5
CHTF18	0	genome.wustl.edu	37	16	847749	847749	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	847749	847749	C	T	SNP	CHTF18	ENST00000317063	human	ensembl	74_37	+1	known	missense	c.3416	p.A1139V	0.116	NULL	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586				73	0	0	27	20	42.5532
FOXF1	0	genome.wustl.edu	37	16	86544636	86544636	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	86544636	86544636	T	C	SNP	FOXF1	ENST00000262426	human	ensembl	74_37	+1	known	missense	c.461	p.M154T	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXF1	HGNC	ENSG00000103241				123	0	0	58	27	31.7647
JPH3	0	genome.wustl.edu	37	16	87678038	87678038	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	87678038	87678038	C	T	SNP	JPH3	ENST00000284262	human	ensembl	74_37	+1	known	missense	c.557	p.A186V	0.996	pirsf_Junctophilin	pirsf_Junctophilin,pfam_MORN,smart_MORN	-	no_errors	JPH3	HGNC	ENSG00000154118				107	0	0	97	7	6.73077
TRAPPC2L	0	genome.wustl.edu	37	16	88926431	88926431	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	88926431	88926431	T	C	SNP	TRAPPC2L	ENST00000565504	human	ensembl	74_37	+1	putative	missense	c.425	p.L142S	0.094	NULL	pfam_Sedlin,pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC2L	HGNC	ENSG00000167515				44	0	0	23	14	37.8378
VPS9D1	0	genome.wustl.edu	37	16	89777020	89777020	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	89777020	89777020	G	A	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.1232	p.A411V	0.156	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				52	0	0	11	22	66.6667
VPS9D1	0	genome.wustl.edu	37	16	89777021	89777021	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	89777021	89777021	C	T	SNP	VPS9D1	ENST00000389386	human	ensembl	74_37	-1	known	missense	c.1231	p.A411T	0.183	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	VPS9D1	HGNC	ENSG00000075399				52	0	0	27	5	15.625
GRIN2A	0	genome.wustl.edu	37	16	9858350	9858350	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	9858350	9858350	G	A	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.3051	p.S1017	0.998	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				117	0	0	59	42	41.5842
GRIN2A	0	genome.wustl.edu	37	16	9943710	9943710	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	9943710	9943710	G	T	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.1231	p.L411M	0.958	NULL	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				97	0	0	58	38	39.5833
MYH4	0	genome.wustl.edu	37	17	10348335	10348335	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	10348335	10348335	C	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	silent	c.5424	p.A1808	0.737	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424				122	0	0	93	46	33.0935
MYH3	0	genome.wustl.edu	37	17	10533718	10533718	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	10533718	10533718	G	A	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.5344	p.R1782W	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				137	0	0	92	45	32.8467
MYH3	0	genome.wustl.edu	37	17	10533732	10533732	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	10533732	10533732	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.5330	p.S1777N	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				137	0	0	94	38	28.7879
MAP2K4	0	genome.wustl.edu	37	17	12011144	12011144	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	12011144	12011144	C	T	SNP	MAP2K4	ENST00000415385	human	ensembl	74_37	+1	known	missense	c.584	p.S195L	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559				117	0	0	88	44	33.3333
ELAC2	0	genome.wustl.edu	37	17	12920927	12920927	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	12920927	12920927	G	A	SNP	ELAC2	ENST00000609345	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ELAC2	HGNC	ENSG00000006744				8	0	0	6	6	50
TVP23C	0	genome.wustl.edu	37	17	15441469	15441469	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	15441469	15441469	C	T	SNP	TVP23C	ENST00000523573	human	ensembl	74_37	-1	known	splice_site	c.162-2	e5-2	0.998	-	-	-	no_errors	TVP23C	HGNC	ENSG00000175106				74	0	0	91	47	34.058
SCARF1	0	genome.wustl.edu	37	17	1548210	1548210	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	1548210	1548210	G	A	SNP	SCARF1	ENST00000263071	human	ensembl	74_37	-1	known	silent	c.183	p.D61	0.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_laminin,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC	ENSG00000074660				28	0	0	19	11	36.6667
TRIM16	0	genome.wustl.edu	37	17	15532407	15532407	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	15532407	15532407	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.1217	p.P406L	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				41	0	0	26	11	29.7297
TRIM16	0	genome.wustl.edu	37	17	15554526	15554526	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	15554526	15554526	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.398	p.A133V	0.217	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926				66	0	0	37	28	43.0769
WDR81	0	genome.wustl.edu	37	17	1637421	1637421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	1637421	1637421	G	A	SNP	WDR81	ENST00000409644	human	ensembl	74_37	+1	known	missense	c.5090	p.R1697H	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Kinase-like_dom,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR81	HGNC	ENSG00000167716				77	0	0	28	21	42.8571
RAI1	0	genome.wustl.edu	37	17	17698048	17698048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	17698048	17698048	C	T	SNP	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	missense	c.1786	p.R596W	0.816	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557				109	0	0	58	20	25.641
MYO15A	0	genome.wustl.edu	37	17	18023050	18023050	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	18023050	18023050	C	T	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	silent	c.936	p.Y312	0.001	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536				112	0	0	63	32	33.6842
TOP3A	0	genome.wustl.edu	37	17	18180995	18180995	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	18180995	18180995	C	T	SNP	TOP3A	ENST00000321105	human	ensembl	74_37	-1	known	missense	c.2821	p.A941T	0.797	NULL	pfam_Topo_IA_cen,pfam_Znf_GRF,pfam_Toprim_domain,pfam_Topo_IA_Znf,superfamily_Topo_IA_core_domain,superfamily_Znf_CCHC,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3A	HGNC	ENSG00000177302				107	0	0	68	36	34.6154
SNORD3B-2	0	genome.wustl.edu	37	17	18967340	18967340	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	18967340	18967340	C	A	SNP	SNORD3B-2	ENST00000364880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.052	-	-	-	no_errors	SNORD3B-2	HGNC	ENSG00000262074				40	0	0	34	11	24.4444
MAPK7	0	genome.wustl.edu	37	17	19284209	19284209	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	19284209	19284209	G	A	SNP	MAPK7	ENST00000308406	human	ensembl	74_37	+1	known	silent	c.687	p.A229	0.986	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK7	HGNC	ENSG00000166484				42	0	0	19	16	45.7143
RNF112	0	genome.wustl.edu	37	17	19315988	19315988	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	19315988	19315988	G	A	SNP	RNF112	ENST00000461366	human	ensembl	74_37	+1	novel	silent	c.273	p.P91	0.211	smart_Znf_RING,pfscan_Znf_RING	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF112	HGNC	ENSG00000128482				37	0	0	20	14	41.1765
MAP2K3	0	genome.wustl.edu	37	17	21208385	21208385	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	21208385	21208385	T	C	SNP	MAP2K3	ENST00000342679	human	ensembl	74_37	+1	known	missense	c.719	p.L240P	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152				171	0	0	127	18	12.4138
WSB1	0	genome.wustl.edu	37	17	25637145	25637145	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	25637145	25637145	C	T	SNP	WSB1	ENST00000262394	human	ensembl	74_37	+1	known	nonsense	c.943	p.R315*	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB1	HGNC	ENSG00000109046				84	0	0	54	36	40
FLOT2	0	genome.wustl.edu	37	17	27215973	27215973	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27215973	27215973	C	T	SNP	FLOT2	ENST00000394908	human	ensembl	74_37	-1	known	missense	c.121	p.D41N	1.000	pfam_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589				40	0	0	20	12	37.5
SEZ6	0	genome.wustl.edu	37	17	27285070	27285070	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27285070	27285070	C	T	SNP	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	missense	c.2197	p.V733M	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				88	0	0	49	26	34.6667
SEZ6	0	genome.wustl.edu	37	17	27308688	27308688	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27308688	27308688	G	A	SNP	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	missense	c.425	p.P142L	0.005	NULL	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				30	0	0	17	5	22.7273
MYO18A	0	genome.wustl.edu	37	17	27493048	27493048	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27493048	27493048	C	T	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.911	p.R304Q	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				143	1	0.694444	77	58	42.963
TAOK1	0	genome.wustl.edu	37	17	27869613	27869613	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27869613	27869613	G	A	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	missense	c.2579	p.R860H	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				97	0	0	65	45	40.9091
SSH2	0	genome.wustl.edu	37	17	27958582	27958582	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27958582	27958582	G	A	SNP	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	silent	c.3549	p.S1183	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				107	0	0	71	37	34.2593
SLC6A4	0	genome.wustl.edu	37	17	28525491	28525491	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	28525491	28525491	G	A	SNP	SLC6A4	ENST00000261707	human	ensembl	74_37	-1	known	missense	c.1876	p.R626C	1.000	NULL	pfam_Na/ntran_symport,pfam_Na/ntran_symport_serotonin_N,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_serotonin_N	-	no_errors	SLC6A4	HGNC	ENSG00000108576				57	0	0	43	25	36.7647
LRRC37B	0	genome.wustl.edu	37	17	30348267	30348267	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	30348267	30348267	G	A	SNP	LRRC37B	ENST00000341671	human	ensembl	74_37	+1	known	silent	c.102	p.P34	0.001	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37B	HGNC	ENSG00000185158				130	0	0	97	18	15.6522
RHBDL3	0	genome.wustl.edu	37	17	30621430	30621430	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	30621430	30621430	C	T	SNP	RHBDL3	ENST00000269051	human	ensembl	74_37	+1	known	missense	c.637	p.R213C	1.000	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met	pfam_Peptidase_S54_rhomboid_dom,pirsf_Peptidase_S54_rhomboid_met,pfscan_EF_hand_dom	-	no_errors	RHBDL3	HGNC	ENSG00000141314				70	0	0	64	5	7.24638
PSMD11	0	genome.wustl.edu	37	17	30804557	30804557	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	30804557	30804557	G	A	SNP	PSMD11	ENST00000261712	human	ensembl	74_37	+1	known	missense	c.868	p.V290M	1.000	pfam_PCI_dom,smart_PAM	pfam_PCI_dom,smart_PAM,smart_PCI_dom	-	no_errors	PSMD11	HGNC	ENSG00000108671				78	0	0	75	4	5.06329
ZNF830	0	genome.wustl.edu	37	17	33289371	33289371	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	33289371	33289371	G	T	SNP	ZNF830	ENST00000361952	human	ensembl	74_37	+1	known	missense	c.786	p.K262N	1.000	NULL	smart_Znf_U1	-	no_errors	ZNF830	HGNC	ENSG00000198783				58	0	0	36	25	40.9836
SLC35G3	0	genome.wustl.edu	37	17	33521221	33521221	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	33521221	33521221	C	T	SNP	SLC35G3	ENST00000297307	human	ensembl	74_37	-1	known	missense	c.106	p.A36T	0.991	NULL	pfam_DMT	-	no_errors	SLC35G3	HGNC	ENSG00000164729				93	0	0	38	38	50
SLFN12	0	genome.wustl.edu	37	17	33749996	33749996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	33749996	33749996	C	T	SNP	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	missense	c.52	p.V18M	0.001	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				152	0	0	102	61	37.4233
ITGAE	0	genome.wustl.edu	37	17	3651333	3651333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	3651333	3651333	C	T	SNP	ITGAE	ENST00000263087	human	ensembl	74_37	-1	known	missense	c.2038	p.V680I	0.959	pfam_Integrin_alpha-2,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_Integrin_alpha_C_CS,smart_VWF_A,smart_Int_alpha_beta-p,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAE	HGNC	ENSG00000083457				60	0	0	24	11	31.4286
CASC3	0	genome.wustl.edu	37	17	38319960	38319960	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	38319960	38319960	C	T	SNP	CASC3	ENST00000264645	human	ensembl	74_37	+1	known	missense	c.1012	p.R338W	0.896	NULL	pfam_Btz_dom	-	no_errors	CASC3	HGNC	ENSG00000108349				231	0	0	147	68	31.6279
KRT27	0	genome.wustl.edu	37	17	38938526	38938526	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	38938526	38938526	C	A	SNP	KRT27	ENST00000301656	human	ensembl	74_37	-1	known	missense	c.220	p.G74W	0.102	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446				112	0	0	48	35	42.1687
KRT39	0	genome.wustl.edu	37	17	39116561	39116561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	39116561	39116561	G	A	SNP	KRT39	ENST00000355612	human	ensembl	74_37	-1	known	missense	c.1189	p.R397C	0.965	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT39	HGNC	ENSG00000196859				106	0	0	116	12	9.375
KRT31	0	genome.wustl.edu	37	17	39551220	39551220	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	39551220	39551220	G	A	SNP	KRT31	ENST00000251645	human	ensembl	74_37	-1	known	missense	c.977	p.A326V	0.485	pfam_IF,prints_Keratin_I	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT31	HGNC	ENSG00000094796				110	0	0	57	34	37.3626
JUP	0	genome.wustl.edu	37	17	39777997	39777997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	39777997	39777997	C	T	SNP	JUP	ENST00000540235	human	ensembl	74_37	-1	known	missense	c.1159	p.A387T	0.019	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801				75	0	0	33	15	31.25
STAT5A	0	genome.wustl.edu	37	17	40453375	40453375	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40453375	40453375	G	A	SNP	STAT5A	ENST00000345506	human	ensembl	74_37	+1	known	missense	c.1072	p.G358R	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,smart_SH2,pfscan_SH2	-	no_errors	STAT5A	HGNC	ENSG00000126561				131	0	0	78	44	36.0656
HSD17B1	0	genome.wustl.edu	37	17	40705488	40705488	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40705488	40705488	G	A	SNP	HSD17B1	ENST00000585807	human	ensembl	74_37	+1	known	silent	c.297	p.P99	0.963	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B1	HGNC	ENSG00000108786				65	0	0	30	24	44.4444
TUBG1	0	genome.wustl.edu	37	17	40765935	40765935	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40765935	40765935	C	T	SNP	TUBG1	ENST00000251413	human	ensembl	74_37	+1	known	silent	c.762	p.I254	0.958	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG1	HGNC	ENSG00000131462				163	0	0	132	38	22.3529
TUBG2	0	genome.wustl.edu	37	17	40814996	40814996	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40814996	40814996	C	T	SNP	TUBG2	ENST00000251412	human	ensembl	74_37	+1	known	silent	c.405	p.F135	0.957	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Gamma_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBG2	HGNC	ENSG00000037042				133	0	0	69	60	46.5116
CNTNAP1	0	genome.wustl.edu	37	17	40844682	40844682	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40844682	40844682	G	A	SNP	CNTNAP1	ENST00000264638	human	ensembl	74_37	+1	known	missense	c.2696	p.R899Q	0.961	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP1	HGNC	ENSG00000108797				84	0	0	59	30	33.7079
AOC3	0	genome.wustl.edu	37	17	41004138	41004138	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	41004138	41004138	A	G	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.778	p.T260A	0.224	pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_N-reg	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				63	0	0	38	19	33.3333
AOC3	0	genome.wustl.edu	37	17	41006671	41006671	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	41006671	41006671	T	A	SNP	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	missense	c.1807	p.Y603N	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				50	0	0	31	25	44.6429
PTGES3L-AARSD1	0	genome.wustl.edu	37	17	41108509	41108509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	41108509	41108509	G	A	SNP	PTGES3L-AARSD1	ENST00000409399	human	ensembl	74_37	-1	known	missense	c.980	p.A327V	0.999	superfamily_Thr/Ala-tRNA-synth_IIc_edit,pfscan_Ala-tRNA-synth_IIc_core	pfam_tRNA_SAD,pfam_CS_dom,pfam_Ala-tRNA-synth_IIc_N,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_HSP20-like_chaperone,smart_tRNA_SAD,pfscan_CS_dom,pfscan_Ala-tRNA-synth_IIc_core	-	no_errors	PTGES3L-AARSD1	HGNC	ENSG00000108825				48	0	0	37	17	31.4815
NBR1	0	genome.wustl.edu	37	17	41343459	41343459	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	41343459	41343459	C	T	SNP	NBR1	ENST00000341165	human	ensembl	74_37	+1	known	missense	c.934	p.R312C	1.000	NULL	pfam_OPR_PB1,pfam_Znf_ZZ,superfamily_UBA-like,smart_OPR_PB1,smart_Znf_ZZ,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_ZZ	-	no_errors	NBR1	HGNC	ENSG00000188554				18	0	0	13	6	31.5789
UBTF	0	genome.wustl.edu	37	17	42288502	42288502	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	42288502	42288502	G	C	SNP	UBTF	ENST00000302904	human	ensembl	74_37	-1	known	missense	c.1108	p.Q370E	1.000	superfamily_HMG_box_dom,superfamily_ARM-type_fold	pfam_HMG_box_dom,superfamily_HMG_box_dom,superfamily_ARM-type_fold,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	UBTF	HGNC	ENSG00000108312				137	0	0	66	52	44.0678
SLC4A1	0	genome.wustl.edu	37	17	42330695	42330695	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	42330695	42330695	C	T	SNP	SLC4A1	ENST00000262418	human	ensembl	74_37	-1	known	missense	c.2102	p.G701D	1.000	pfam_HCO3_transpt_C,prints_HCO3_transpt_euk,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A1	HGNC	ENSG00000004939				84	0	0	48	23	32.3944
FZD2	0	genome.wustl.edu	37	17	42636425	42636425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	42636425	42636425	C	T	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	missense	c.1369	p.R457W	0.999	pfam_Frizzled,pfscan_GPCR_2-like	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340				91	0	0	47	42	47.191
PLCD3	0	genome.wustl.edu	37	17	43192542	43192542	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	43192542	43192542	T	G	SNP	PLCD3	ENST00000322765	human	ensembl	74_37	-1	known	missense	c.1628	p.H543P	0.002	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD3	HGNC	ENSG00000161714				13	0	0	4	3	42.8571
TBKBP1	0	genome.wustl.edu	37	17	45786619	45786619	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	45786619	45786619	G	A	SNP	TBKBP1	ENST00000361722	human	ensembl	74_37	+1	known	missense	c.1520	p.R507H	0.996	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933				9	0	0	1	3	75
PELP1	0	genome.wustl.edu	37	17	4579121	4579121	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	4579121	4579121	G	A	SNP	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	missense	c.1039	p.R347W	1.000	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				10	0	0	8	2	20
HOXB5	0	genome.wustl.edu	37	17	46670643	46670643	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	46670643	46670643	G	A	SNP	HOXB5	ENST00000239151	human	ensembl	74_37	-1	known	silent	c.402	p.D134	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB5	HGNC	ENSG00000120075				58	0	0	25	20	44.4444
HOXB6	0	genome.wustl.edu	37	17	46674002	46674002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	46674002	46674002	G	A	SNP	HOXB6	ENST00000225648	human	ensembl	74_37	-1	known	missense	c.448	p.R150C	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB6	HGNC	ENSG00000108511				103	0	0	59	36	37.8947
COL1A1	0	genome.wustl.edu	37	17	48267382	48267382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	48267382	48267382	C	T	SNP	COL1A1	ENST00000225964	human	ensembl	74_37	-1	known	missense	c.2539	p.A847T	0.982	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL1A1	HGNC	ENSG00000108821				71	0	0	45	48	51.6129
XYLT2	0	genome.wustl.edu	37	17	48434499	48434499	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	48434499	48434499	G	A	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	silent	c.1827	p.A609	0.498	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				51	0	0	22	20	47.619
EPN3	0	genome.wustl.edu	37	17	48618282	48618282	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	48618282	48618282	T	G	SNP	EPN3	ENST00000537145	human	ensembl	74_37	+1	known	missense	c.1192	p.S398A	1.000	NULL	pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N,pfscan_Ubiquitin-int_motif	-	no_errors	EPN3	HGNC	ENSG00000049283				50	0	0	26	14	35
CAMTA2	0	genome.wustl.edu	37	17	4880409	4880409	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	4880409	4880409	C	T	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	missense	c.1913	p.R638Q	1.000	superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				108	0	0	63	46	42.2018
CAMTA2	0	genome.wustl.edu	37	17	4886166	4886166	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	4886166	4886166	G	A	SNP	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	silent	c.294	p.I98	1.000	pfam_CG-1_dom	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				97	0	0	54	31	36.4706
KIF2B	0	genome.wustl.edu	37	17	51901717	51901717	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	51901717	51901717	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	silent	c.1323	p.G441	0.997	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				56	0	0	38	23	37.7049
TOM1L1	0	genome.wustl.edu	37	17	53014489	53014489	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	53014489	53014489	C	T	SNP	TOM1L1	ENST00000575882	human	ensembl	74_37	+1	known	missense	c.935	p.A312V	1.000	pirsf_TOM1	pfam_VHS,pfam_GAT,superfamily_ENTH_VHS,smart_VHS_subgr,pirsf_TOM1,pfscan_GAT,pfscan_VHS	-	no_errors	TOM1L1	HGNC	ENSG00000141198				104	0	0	51	38	42.6966
VEZF1	0	genome.wustl.edu	37	17	56056639	56056639	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	56056639	56056639	G	T	SNP	VEZF1	ENST00000581208	human	ensembl	74_37	-1	known	missense	c.1012	p.Q338K	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	VEZF1	HGNC	ENSG00000136451				154	0	0	106	10	8.62069
OR4D1	0	genome.wustl.edu	37	17	56233200	56233200	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	56233200	56233200	C	T	SNP	OR4D1	ENST00000268912	human	ensembl	74_37	+1	known	missense	c.686	p.S229L	0.194	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D1	HGNC	ENSG00000141194				59	0	0	36	23	38.9831
RAD51C	0	genome.wustl.edu	37	17	56811500	56811500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	56811500	56811500	G	A	SNP	RAD51C	ENST00000337432	human	ensembl	74_37	+1	known	missense	c.1048	p.V350I	0.903	superfamily_P-loop_NTPase,pirsf_DNA_recomb/repair_RecA-like	pfam_DNA_recomb/repair_Rad51_C,pfam_Circ_KaiC/RadA,superfamily_P-loop_NTPase,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,pirsf_DNA_recomb/repair_RecA-like,pfscan_DNA_recomb_RecA/RadB_ATP-bd	-	no_errors	RAD51C	HGNC	ENSG00000108384				32	0	0	19	12	38.7097
TBX2	0	genome.wustl.edu	37	17	59485721	59485721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	59485721	59485721	C	T	SNP	TBX2	ENST00000240328	human	ensembl	74_37	+1	novel	missense	c.1993	p.R665C	0.872	NULL	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX2	HGNC	ENSG00000121068				13	0	0	7	5	41.6667
TANC2	0	genome.wustl.edu	37	17	61498206	61498206	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	61498206	61498206	C	T	SNP	TANC2	ENST00000424789	human	ensembl	74_37	+1	known	silent	c.4863	p.A1621	0.183	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC2	HGNC	ENSG00000170921				113	0	0	78	36	31.5789
CCDC47	0	genome.wustl.edu	37	17	61824306	61824306	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	61824306	61824306	G	A	SNP	CCDC47	ENST00000225726	human	ensembl	74_37	-1	known	missense	c.1387	p.R463C	1.000	pfam_DUF1682	pfam_DUF1682	-	no_errors	CCDC47	HGNC	ENSG00000108588				20	0	0	13	15	53.5714
FTSJ3	0	genome.wustl.edu	37	17	61898289	61898289	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	61898289	61898289	C	T	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.1982	p.R661Q	1.000	pfam_rRNA_MeTfrase_Spb1_C	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592				93	0	0	54	34	38.6364
SMARCD2	0	genome.wustl.edu	37	17	61912912	61912912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	61912912	61912912	G	A	SNP	SMARCD2	ENST00000448276	human	ensembl	74_37	-1	known	missense	c.583	p.R195W	1.000	NULL	pfam_SWIB_MDM2_domain,superfamily_SWIB_MDM2_domain,smart_SWIB_domain	-	no_errors	SMARCD2	HGNC	ENSG00000108604				89	0	0	47	26	35.6164
CSH1	0	genome.wustl.edu	37	17	61972557	61972557	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	61972557	61972557	C	T	SNP	CSH1	ENST00000316193	human	ensembl	74_37	-1	known	missense	c.479	p.R160Q	0.773	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	CSH1	HGNC	ENSG00000136488				159	1	0.625	97	61	38.6076
KPNA2	0	genome.wustl.edu	37	17	66040473	66040473	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	66040473	66040473	G	A	SNP	KPNA2	ENST00000330459	human	ensembl	74_37	+1	known	missense	c.1201	p.V401M	1.000	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_Importin-a_IBB,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo,pfscan_Importin-a_IBB	-	no_errors	KPNA2	HGNC	ENSG00000182481				266	0	0	213	17	7.3913
FAM20A	0	genome.wustl.edu	37	17	66533689	66533689	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	66533689	66533689	G	A	SNP	FAM20A	ENST00000592554	human	ensembl	74_37	-1	known	nonsense	c.1555	p.Q519*	0.989	pfam_DUF1193	pfam_DUF1193	-	no_errors	FAM20A	HGNC	ENSG00000108950				19	0	0	19	11	36.6667
KCNJ16	0	genome.wustl.edu	37	17	68128923	68128923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	68128923	68128923	C	T	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.695	p.T232M	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822				91	0	0	60	30	33.3333
KCNJ16	0	genome.wustl.edu	37	17	68129127	68129127	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	68129127	68129127	T	A	SNP	KCNJ16	ENST00000283936	human	ensembl	74_37	+1	known	missense	c.899	p.V300D	0.748	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir5,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ16	HGNC	ENSG00000153822				123	0	0	66	38	36.5385
MIR497HG	0	genome.wustl.edu	37	17	6920072	6920072	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	6920072	6920072	C	A	SNP	MIR497HG	ENST00000572453	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MIR497HG	HGNC	ENSG00000267532				20	0	0	18	12	40
RAB37	0	genome.wustl.edu	37	17	72739292	72739292	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	72739292	72739292	C	T	SNP	RAB37	ENST00000392614	human	ensembl	74_37	+1	known	missense	c.286	p.R96W	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB37	HGNC	ENSG00000172794				131	0	0	68	33	32.6733
GGA3	0	genome.wustl.edu	37	17	73239146	73239146	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	73239146	73239146	T	C	SNP	GGA3	ENST00000245541	human	ensembl	74_37	-1	known	missense	c.526	p.K176E	1.000	pfscan_GAT	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_ENTH_VHS,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA3	HGNC	ENSG00000125447				105	0	0	82	45	35.4331
C17orf74	0	genome.wustl.edu	37	17	7329696	7329696	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7329696	7329696	G	A	SNP	C17orf74	ENST00000333870	human	ensembl	74_37	+1	known	missense	c.386	p.R129H	0.000	NULL	NULL	-	no_errors	C17orf74	HGNC	ENSG00000184560				92	0	0	50	28	35.8974
GRB2	0	genome.wustl.edu	37	17	73316454	73316454	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	73316454	73316454	C	T	SNP	GRB2	ENST00000316804	human	ensembl	74_37	-1	known	missense	c.649	p.V217I	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_SH2,pfam_SH3-like_bac-type,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain,prints_p67phox	-	no_errors	GRB2	HGNC	ENSG00000177885				211	0	0	135	85	38.6364
KIAA0195	0	genome.wustl.edu	37	17	73486331	73486331	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	73486331	73486331	C	A	SNP	KIAA0195	ENST00000314256	human	ensembl	74_37	+1	known	missense	c.971	p.P324H	1.000	NULL	pfam_ATPase_P-typ_cation-transptr_C	-	no_errors	KIAA0195	HGNC	ENSG00000177728				137	0	0	77	40	34.188
ZBTB4	0	genome.wustl.edu	37	17	7365565	7365565	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7365565	7365565	A	G	SNP	ZBTB4	ENST00000311403	human	ensembl	74_37	-1	known	silent	c.2736	p.A912	0.998	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB4	HGNC	ENSG00000174282				172	0	0	88	62	41.3333
GALR2	0	genome.wustl.edu	37	17	74071131	74071131	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	74071131	74071131	C	T	SNP	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	missense	c.167	p.A56V	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				61	0	0	25	26	50.9804
BIRC5	0	genome.wustl.edu	37	17	76212679	76212679	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	76212679	76212679	C	T	SNP	BIRC5	ENST00000589892	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BIRC5	HGNC	ENSG00000089685				61	0	0	49	32	39.5062
ENPP7	0	genome.wustl.edu	37	17	77707394	77707394	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	77707394	77707394	C	T	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	silent	c.342	p.G114	0.006	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				69	0	0	22	17	43.5897
ENPP7	0	genome.wustl.edu	37	17	77709291	77709291	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	77709291	77709291	C	T	SNP	ENPP7	ENST00000328313	human	ensembl	74_37	+1	known	silent	c.849	p.N283	0.042	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Metalloenzyme,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP7	HGNC	ENSG00000182156				68	0	0	46	17	26.9841
GAA	0	genome.wustl.edu	37	17	78090851	78090851	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	78090851	78090851	C	T	SNP	GAA	ENST00000302262	human	ensembl	74_37	+1	known	silent	c.2274	p.A758	0.017	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	GAA	HGNC	ENSG00000171298				49	0	0	25	21	45.6522
SLC26A11	0	genome.wustl.edu	37	17	78195370	78195370	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	78195370	78195370	C	T	SNP	SLC26A11	ENST00000361193	human	ensembl	74_37	+1	known	missense	c.11	p.S4L	0.001	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A11	HGNC	ENSG00000181045				18	0	0	13	4	23.5294
TRAPPC1	0	genome.wustl.edu	37	17	7833935	7833935	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7833935	7833935	G	A	SNP	TRAPPC1	ENST00000303731	human	ensembl	74_37	-1	known	missense	c.427	p.R143W	1.000	NULL	pfam_Sybindin,superfamily_Longin-like_dom	-	no_errors	TRAPPC1	HGNC	ENSG00000170043				49	0	0	26	21	44.6809
LOC100294362	0	genome.wustl.edu	37	17	78388912	78388912	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	78388912	78388912	G	A	SNP	LOC100294362	ENST00000572151	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	CTD-2047H16.4	Clone_based_vega_gene	ENSG00000263069				14	0	0	4	5	55.5556
AATK	0	genome.wustl.edu	37	17	79094123	79094123	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79094123	79094123	G	A	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	missense	c.3613	p.R1205C	0.051	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				49	0	0	21	13	38.2353
AATK	0	genome.wustl.edu	37	17	79095729	79095729	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79095729	79095729	C	T	SNP	AATK	ENST00000326724	human	ensembl	74_37	-1	known	silent	c.2007	p.A669	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AATK	HGNC	ENSG00000181409				47	0	0	19	12	38.7097
SLC38A10	0	genome.wustl.edu	37	17	79220706	79220706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79220706	79220706	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.2221	p.E741K	0.540	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				77	0	0	37	26	41.2698
SLC38A10	0	genome.wustl.edu	37	17	79234119	79234119	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79234119	79234119	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.1207	p.E403K	0.001	NULL	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637				19	0	0	15	5	25
ALOX12B	0	genome.wustl.edu	37	17	7976235	7976235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7976235	7976235	C	T	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.1960	p.V654M	0.950	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477				44	0	0	22	16	42.1053
DCXR	0	genome.wustl.edu	37	17	79994510	79994510	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79994510	79994510	T	C	SNP	DCXR	ENST00000306869	human	ensembl	74_37	-1	known	missense	c.358	p.R120G	0.888	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DCXR	HGNC	ENSG00000169738				68	0	0	35	31	46.9697
FASN	0	genome.wustl.edu	37	17	80041487	80041487	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	80041487	80041487	C	T	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.5247	p.A1749	0.827	pfam_ADH_C,smart_PKS_ER	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				17	0	0	11	6	35.2941
FASN	0	genome.wustl.edu	37	17	80049207	80049207	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	80049207	80049207	G	A	SNP	FASN	ENST00000306749	human	ensembl	74_37	-1	known	silent	c.1383	p.P461	0.001	NULL	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710				19	0	0	10	9	47.3684
PFAS	0	genome.wustl.edu	37	17	8172397	8172397	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	8172397	8172397	C	A	SNP	PFAS	ENST00000314666	human	ensembl	74_37	+1	known	missense	c.3832	p.P1278T	0.999	tigrfam_PRibForGlyAmidine_synth	pfam_AIR_synth_C_dom,pfam_AIR_synth_N_dom,superfamily_PurM_N-like,superfamily_AIR_synth_C_dom,tigrfam_PRibForGlyAmidine_synth	-	no_errors	PFAS	HGNC	ENSG00000178921				85	0	0	53	37	41.1111
MYH10	0	genome.wustl.edu	37	17	8408178	8408178	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	8408178	8408178	G	A	SNP	MYH10	ENST00000396239	human	ensembl	74_37	-1	known	nonsense	c.3403	p.R1135*	0.975	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026				165	0	0	147	11	6.96203
MFSD6L	0	genome.wustl.edu	37	17	8700837	8700837	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	8700837	8700837	C	T	SNP	MFSD6L	ENST00000329805	human	ensembl	74_37	-1	known	nonsense	c.1602	p.W534*	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD6L	HGNC	ENSG00000185156				46	0	0	36	22	37.931
WDR16	0	genome.wustl.edu	37	17	9489257	9489257	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	9489257	9489257	G	A	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.268	p.A90T	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596				118	1	0.840336	70	37	34.5794
DHRS7C	0	genome.wustl.edu	37	17	9694592	9694592	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	9694592	9694592	T	C	SNP	DHRS7C	ENST00000330255	human	ensembl	74_37	-1	known	missense	c.10	p.M4V	0.536	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS7C	HGNC	ENSG00000184544				26	0	0	12	11	47.8261
TUBB6	0	genome.wustl.edu	37	18	12325616	12325616	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	12325616	12325616	C	T	SNP	TUBB6	ENST00000317702	human	ensembl	74_37	+1	known	silent	c.828	p.R276	0.080	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB6	HGNC	ENSG00000176014				83	0	0	32	34	51.5152
ANKRD20A5P	0	genome.wustl.edu	37	18	14179436	14179436	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	14179436	14179436	C	A	SNP	ANKRD20A5P	ENST00000581181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481				23	0	0	13	5	27.7778
RIOK3	0	genome.wustl.edu	37	18	21057190	21057190	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	21057190	21057190	C	T	SNP	RIOK3	ENST00000339486	human	ensembl	74_37	+1	known	silent	c.1302	p.H434	0.977	pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	pfam_RIO-like_kinase,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_RIO_kinase,pirsf_Ser/Thr_kinase_Rio3	-	no_errors	RIOK3	HGNC	ENSG00000101782				105	0	0	58	39	40.2062
ZNF521	0	genome.wustl.edu	37	18	22807137	22807137	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	22807137	22807137	T	C	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.745	p.S249G	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795				84	0	0	50	30	37.5
KCTD1	0	genome.wustl.edu	37	18	24039669	24039669	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	24039669	24039669	T	C	SNP	KCTD1	ENST00000417602	human	ensembl	74_37	-1	known	missense	c.2354	p.N785S	1.000	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504				69	0	0	47	36	43.3735
SYT4	0	genome.wustl.edu	37	18	40851770	40851770	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	40851770	40851770	T	A	SNP	SYT4	ENST00000255224	human	ensembl	74_37	-1	known	missense	c.877	p.I293F	1.000	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin	-	no_errors	SYT4	HGNC	ENSG00000132872				103	0	0	57	43	43
SETBP1	0	genome.wustl.edu	37	18	42281385	42281385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	42281385	42281385	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.74	p.A25V	0.709	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				13	0	0	3	4	57.1429
SETBP1	0	genome.wustl.edu	37	18	42281469	42281469	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	42281469	42281469	A	G	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	missense	c.158	p.E53G	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				42	0	0	28	19	40.4255
SETBP1	0	genome.wustl.edu	37	18	42531549	42531549	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	42531549	42531549	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.2244	p.H748	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				55	0	0	42	21	33.3333
SETBP1	0	genome.wustl.edu	37	18	42531687	42531687	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	42531687	42531687	C	T	SNP	SETBP1	ENST00000282030	human	ensembl	74_37	+1	known	silent	c.2382	p.S794	1.000	NULL	smart_AT_hook_DNA-bd_motif	-	no_errors	SETBP1	HGNC	ENSG00000152217				56	0	0	35	27	43.5484
SMAD2	0	genome.wustl.edu	37	18	45395688	45395688	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	45395688	45395688	C	T	SNP	SMAD2	ENST00000262160	human	ensembl	74_37	-1	known	missense	c.446	p.C149Y	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387				42	0	0	19	11	36.6667
ACAA2	0	genome.wustl.edu	37	18	47322226	47322226	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	47322226	47322226	A	G	SNP	ACAA2	ENST00000285093	human	ensembl	74_37	-1	known	missense	c.338	p.V113A	1.000	pfam_Thiolase_N,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	pfam_Thiolase_N,pfam_Thiolase_C,superfamily_Thiolase-like,pirsf_Thiolase,tigrfam_Thiolase	-	no_errors	ACAA2	HGNC	ENSG00000167315				50	0	0	34	23	40.3509
MAPK4	0	genome.wustl.edu	37	18	48256134	48256134	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	48256134	48256134	C	T	SNP	MAPK4	ENST00000400384	human	ensembl	74_37	+1	known	silent	c.1674	p.D558	0.923	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK4	HGNC	ENSG00000141639				18	0	0	5	4	44.4444
DCC	0	genome.wustl.edu	37	18	50936875	50936875	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	50936875	50936875	A	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.2989	p.M997L	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				127	0	0	83	53	38.9706
TMEM200C	0	genome.wustl.edu	37	18	5891840	5891840	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	5891840	5891840	A	G	SNP	TMEM200C	ENST00000383490	human	ensembl	74_37	-1	known	missense	c.223	p.W75R	1.000	pfam_DUF2371_TMEM200	pfam_DUF2371_TMEM200	-	no_errors	TMEM200C	HGNC	ENSG00000206432				66	0	0	26	11	29.7297
CDH20	0	genome.wustl.edu	37	18	59221697	59221697	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	59221697	59221697	C	T	SNP	CDH20	ENST00000262717	human	ensembl	74_37	+1	known	silent	c.2175	p.Y725	1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH20	HGNC	ENSG00000101542				33	0	0	18	10	35.7143
KIAA1468	0	genome.wustl.edu	37	18	59855209	59855209	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	59855209	59855209	C	T	SNP	KIAA1468	ENST00000256858	human	ensembl	74_37	+1	known	silent	c.471	p.G157	0.052	NULL	pfam_HEAT,superfamily_ARM-type_fold,smart_LisH_dimerisation,pfscan_HEAT_type_2,pfscan_LisH_dimerisation	-	no_errors	KIAA1468	HGNC	ENSG00000134444				19	0	0	8	7	46.6667
SERPINB5	0	genome.wustl.edu	37	18	61156698	61156698	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	61156698	61156698	G	A	SNP	SERPINB5	ENST00000382771	human	ensembl	74_37	+1	known	splice_site	c.424+1	e3+1	1.000	-	-	-	no_errors	SERPINB5	HGNC	ENSG00000206075				52	0	0	38	19	33.3333
SERPINB7	0	genome.wustl.edu	37	18	61463517	61463517	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	61463517	61463517	C	T	SNP	SERPINB7	ENST00000336429	human	ensembl	74_37	+1	known	silent	c.354	p.A118	0.631	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB7	HGNC	ENSG00000166396				37	0	0	24	16	40
SERPINB2	0	genome.wustl.edu	37	18	61570186	61570186	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	61570186	61570186	A	G	SNP	SERPINB2	ENST00000299502	human	ensembl	74_37	+1	known	missense	c.895	p.K299E	0.287	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB2	HGNC	ENSG00000197632				29	0	0	34	10	22.7273
DOK6	0	genome.wustl.edu	37	18	67365809	67365809	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	67365809	67365809	G	A	SNP	DOK6	ENST00000382713	human	ensembl	74_37	+1	known	nonsense	c.579	p.W193*	1.000	pfam_Insln_rcpt_S1,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK6	HGNC	ENSG00000206052				36	0	0	38	4	9.52381
RTTN	0	genome.wustl.edu	37	18	67788837	67788837	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	67788837	67788837	A	C	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	silent	c.3483	p.S1161	0.008	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				59	0	0	48	25	34.2466
LAMA1	0	genome.wustl.edu	37	18	6950849	6950849	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	6950849	6950849	A	C	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8329	p.F2777V	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				60	0	0	46	20	30.303
LAMA1	0	genome.wustl.edu	37	18	6958539	6958539	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	6958539	6958539	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.7901	p.T2634M	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				61	0	0	29	30	50.8475
CBLN2	0	genome.wustl.edu	37	18	70209264	70209264	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	70209264	70209264	G	A	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	silent	c.132	p.P44	0.997	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668				37	0	0	13	13	50
NETO1	0	genome.wustl.edu	37	18	70534513	70534513	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	70534513	70534513	C	T	SNP	NETO1	ENST00000327305	human	ensembl	74_37	-1	known	missense	c.14	p.R5H	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt	-	no_errors	NETO1	HGNC	ENSG00000166342				20	0	0	9	8	47.0588
ATP9B	0	genome.wustl.edu	37	18	77119425	77119425	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	77119425	77119425	C	T	SNP	ATP9B	ENST00000426216	human	ensembl	74_37	+1	known	missense	c.2975	p.A992V	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP9B	HGNC	ENSG00000166377				54	0	0	25	11	30.5556
KCNG2	0	genome.wustl.edu	37	18	77624158	77624158	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	77624158	77624158	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.491	p.R164H	1.000	prints_K_chnl_volt-dep_Kv6	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342				31	0	0	10	11	52.381
PQLC1	0	genome.wustl.edu	37	18	77679291	77679291	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	77679291	77679291	G	A	SNP	PQLC1	ENST00000397778	human	ensembl	74_37	-1	known	silent	c.501	p.S167	0.007	NULL	smart_CTNS	-	no_errors	PQLC1	HGNC	ENSG00000122490				69	0	0	33	20	37.7358
RBFA	0	genome.wustl.edu	37	18	77798609	77798609	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	77798609	77798609	G	A	SNP	RBFA	ENST00000306735	human	ensembl	74_37	+1	known	silent	c.483	p.A161	0.000	pfam_Ribosome-bd_facA,superfamily_Ribosome-bd_facA_dom	pfam_Ribosome-bd_facA,superfamily_Ribosome-bd_facA_dom	-	no_errors	RBFA	HGNC	ENSG00000101546				66	0	0	41	24	36.9231
ADCYAP1	0	genome.wustl.edu	37	18	909505	909505	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	909505	909505	G	C	SNP	ADCYAP1	ENST00000450565	human	ensembl	74_37	+1	known	missense	c.400	p.D134H	1.000	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	pfam_Glucagon_GIP_secretin_VIP,smart_Glucagon_GIP_secretin_VIP,prints_Glucagon_GIP_secretin_VIP	-	no_errors	ADCYAP1	HGNC	ENSG00000141433				135	0	0	98	44	30.9859
ANKRD12	0	genome.wustl.edu	37	18	9254358	9254358	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	9254358	9254358	G	T	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.1093	p.D365Y	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745				80	0	0	57	27	32.1429
CDKN2D	0	genome.wustl.edu	37	19	10677960	10677960	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	10677960	10677960	A	G	SNP	CDKN2D	ENST00000335766	human	ensembl	74_37	-1	known	missense	c.275	p.V92A	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CDKN2D	HGNC	ENSG00000129355				138	0	0	24	98	80.3279
SBNO2	0	genome.wustl.edu	37	19	1123582	1123582	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	1123582	1123582	C	T	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	silent	c.579	p.A193	0.204	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932				37	0	0	10	24	70.5882
PRKCSH	0	genome.wustl.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	11558370	11558370	G	A	SNP	PRKCSH	ENST00000252455	human	ensembl	74_37	+1	known	silent	c.966	p.E322	0.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_LDrepeatLR_classA_rpt,pfscan_EF_hand_dom	-	no_errors	PRKCSH	HGNC	ENSG00000130175				11	0	0	3	6	66.6667
ZNF69	0	genome.wustl.edu	37	19	12015726	12015726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	12015726	12015726	G	A	SNP	ZNF69	ENST00000429654	human	ensembl	74_37	+1	known	missense	c.514	p.A172T	0.030	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF69	HGNC	ENSG00000198429				189	0	0	31	146	82.4859
MAN2B1	0	genome.wustl.edu	37	19	12772078	12772078	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	12772078	12772078	G	A	SNP	MAN2B1	ENST00000456935	human	ensembl	74_37	-1	known	missense	c.1022	p.A341V	0.000	pfam_Glyco_hydro_38_N,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_N,pfam_Glyco_hydro_38_cen_dom,superfamily_Gal_mutarotase_SF_dom,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774				98	0	0	75	28	27.1845
PRDX2	0	genome.wustl.edu	37	19	12910705	12910705	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	12910705	12910705	T	C	SNP	PRDX2	ENST00000301522	human	ensembl	74_37	-1	known	missense	c.479	p.Q160R	1.000	superfamily_Thioredoxin-like_fold	pfam_AhpC/TSA,pfam_Redoxin,pfam_Peroxiredoxin_C,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX2	HGNC	ENSG00000167815				72	0	0	16	68	80.9524
CC2D1A	0	genome.wustl.edu	37	19	14034191	14034191	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	14034191	14034191	C	T	SNP	CC2D1A	ENST00000318003	human	ensembl	74_37	+1	known	missense	c.1687	p.R563W	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_DM14,smart_C2_dom	-	no_errors	CC2D1A	HGNC	ENSG00000132024				94	0	0	81	5	5.81395
PRKACA	0	genome.wustl.edu	37	19	14217673	14217673	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	14217673	14217673	G	A	SNP	PRKACA	ENST00000308677	human	ensembl	74_37	-1	known	nonsense	c.136	p.R46*	0.467	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062				81	0	0	18	66	78.5714
PCSK4	0	genome.wustl.edu	37	19	1483414	1483414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	1483414	1483414	G	A	SNP	PCSK4	ENST00000588195	human	ensembl	74_37	-1	known	missense	c.1426	p.R476W	0.016	NULL	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom,superfamily_Prot_inh_propept	-	no_errors	PCSK4	HGNC	ENSG00000115257				63	0	0	52	4	7.14286
BRD4	0	genome.wustl.edu	37	19	15355182	15355182	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	15355182	15355182	C	T	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	missense	c.2441	p.G814D	1.000	NULL	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				17	0	0	13	3	18.75
WIZ	0	genome.wustl.edu	37	19	15536330	15536330	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	15536330	15536330	G	A	SNP	WIZ	ENST00000389282	human	ensembl	74_37	-1	known	missense	c.3902	p.T1301I	0.175	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	WIZ	HGNC	ENSG00000011451				22	0	0	9	8	47.0588
CYP4F12	0	genome.wustl.edu	37	19	15795637	15795637	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	15795637	15795637	G	A	SNP	CYP4F12	ENST00000324632	human	ensembl	74_37	+1	known	silent	c.930	p.G310	0.500	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F12	HGNC	ENSG00000186204				72	0	0	41	24	36.9231
HSH2D	0	genome.wustl.edu	37	19	16268143	16268143	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	16268143	16268143	C	T	SNP	HSH2D	ENST00000253680	human	ensembl	74_37	+1	known	missense	c.598	p.R200C	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	HSH2D	HGNC	ENSG00000196684				63	0	0	31	22	41.5094
ABHD8	0	genome.wustl.edu	37	19	17411739	17411739	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	17411739	17411739	C	T	SNP	ABHD8	ENST00000247706	human	ensembl	74_37	-1	known	silent	c.687	p.A229	0.919	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,prints_AB_hydrolase_1,prints_Epox_hydrolase-like	-	no_errors	ABHD8	HGNC	ENSG00000127220				127	0	0	73	52	41.6
COLGALT1	0	genome.wustl.edu	37	19	17683348	17683348	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	17683348	17683348	C	T	SNP	COLGALT1	ENST00000252599	human	ensembl	74_37	+1	known	missense	c.886	p.R296C	1.000	NULL	pfam_Glyco_trans_25	-	no_errors	COLGALT1	HGNC	ENSG00000130309				118	0	0	70	33	32.0388
JAK3	0	genome.wustl.edu	37	19	17948862	17948862	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	17948862	17948862	A	C	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1580	p.L527R	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				94	0	0	54	45	45.4545
KCNN1	0	genome.wustl.edu	37	19	18092827	18092827	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18092827	18092827	A	G	SNP	KCNN1	ENST00000222249	human	ensembl	74_37	+1	known	missense	c.808	p.T270A	1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN1	HGNC	ENSG00000105642				20	0	0	7	5	41.6667
KIAA1683	0	genome.wustl.edu	37	19	18378115	18378115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18378115	18378115	C	T	SNP	KIAA1683	ENST00000392413	human	ensembl	74_37	-1	known	missense	c.235	p.V79I	0.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	KIAA1683	HGNC	ENSG00000130518				114	0	0	99	8	7.47664
GDF15	0	genome.wustl.edu	37	19	18499097	18499097	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18499097	18499097	G	A	SNP	GDF15	ENST00000252809	human	ensembl	74_37	+1	known	silent	c.279	p.V93	0.899	NULL	pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	GDF15	HGNC	ENSG00000130513				51	0	0	30	17	36.1702
ELL	0	genome.wustl.edu	37	19	18569015	18569015	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18569015	18569015	C	T	SNP	ELL	ENST00000262809	human	ensembl	74_37	-1	known	missense	c.869	p.R290Q	0.997	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656				60	0	0	37	21	36.2069
KLHL26	0	genome.wustl.edu	37	19	18779108	18779108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18779108	18779108	C	T	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	missense	c.901	p.R301C	0.992	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487				97	0	0	46	31	40.2597
GDF1	0	genome.wustl.edu	37	19	18980875	18980875	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18980875	18980875	G	A	SNP	GDF1	ENST00000247005	human	ensembl	74_37	-1	known	missense	c.242	p.T81M	0.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF1	HGNC	ENSG00000130283				9	0	0	4	4	50
COPE	0	genome.wustl.edu	37	19	19017912	19017912	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	19017912	19017912	G	A	SNP	COPE	ENST00000262812	human	ensembl	74_37	-1	known	silent	c.300	p.I100	0.450	pfam_Coatomer_esu,pirsf_Coatomer_esu	pfam_Coatomer_esu,pirsf_Coatomer_esu	-	no_errors	COPE	HGNC	ENSG00000105669				31	0	0	8	4	33.3333
SUGP2	0	genome.wustl.edu	37	19	19112468	19112468	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	19112468	19112468	C	T	SNP	SUGP2	ENST00000337018	human	ensembl	74_37	-1	known	missense	c.2945	p.R982Q	0.999	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP2	HGNC	ENSG00000064607				56	0	0	34	26	43.3333
HAPLN4	0	genome.wustl.edu	37	19	19371881	19371881	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	19371881	19371881	G	A	SNP	HAPLN4	ENST00000291481	human	ensembl	74_37	-1	known	silent	c.225	p.A75	0.054	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN4	HGNC	ENSG00000187664				48	0	0	28	19	40.4255
ATP13A1	0	genome.wustl.edu	37	19	19762529	19762529	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	19762529	19762529	G	A	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	silent	c.2304	p.H768	0.998	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				54	0	0	23	24	51.0638
ZNF208	0	genome.wustl.edu	37	19	22155896	22155896	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	22155896	22155896	A	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.1940	p.I647S	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321				65	0	0	66	5	7.04225
ZNF729	0	genome.wustl.edu	37	19	22497682	22497682	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	22497682	22497682	A	G	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.1463	p.Y488C	0.051	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				34	0	0	18	9	33.3333
ZNF729	0	genome.wustl.edu	37	19	22498012	22498012	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	22498012	22498012	A	G	SNP	ZNF729	ENST00000601693	human	ensembl	74_37	+1	novel	missense	c.1793	p.K598R	0.989	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF729	HGNC	ENSG00000196350				21	0	0	11	9	45
LOC101929124	0	genome.wustl.edu	37	19	22707462	22707462	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	22707462	22707462	A	G	SNP	LOC101929124	ENST00000562262	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.090	-	-	-	no_errors	CTC-457E21.1	Clone_based_vega_gene	ENSG00000260599				59	0	0	31	19	38
ZNF728	0	genome.wustl.edu	37	19	23158556	23158556	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	23158556	23158556	A	G	SNP	ZNF728	ENST00000594710	human	ensembl	74_37	-1	novel	missense	c.1583	p.V528A	0.952	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF728	HGNC	ENSG00000269067				18	0	0	17	7	29.1667
URI1	0	genome.wustl.edu	37	19	30500156	30500156	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	30500156	30500156	G	A	SNP	URI1	ENST00000542441	human	ensembl	74_37	+1	known	missense	c.931	p.D311N	0.002	NULL	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176				26	0	0	21	11	34.375
ZNF536	0	genome.wustl.edu	37	19	30934862	30934862	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	30934862	30934862	G	A	SNP	ZNF536	ENST00000355537	human	ensembl	74_37	+1	known	silent	c.393	p.P131	0.594	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF536	HGNC	ENSG00000198597				53	0	0	23	24	51.0638
TSHZ3	0	genome.wustl.edu	37	19	31767913	31767913	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	31767913	31767913	G	A	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.2786	p.P929L	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297				53	0	0	26	17	39.5349
S1PR4	0	genome.wustl.edu	37	19	3179235	3179235	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	3179235	3179235	C	T	SNP	S1PR4	ENST00000246115	human	ensembl	74_37	+1	known	missense	c.445	p.R149W	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_EDG6_rcpt,prints_S1P_rcpt,prints_GPCR_Rhodpsn	-	no_errors	S1PR4	HGNC	ENSG00000125910				106	0	0	17	76	81.7204
ATP4A	0	genome.wustl.edu	37	19	36046232	36046232	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36046232	36046232	G	A	SNP	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	missense	c.2162	p.A721V	0.992	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				63	0	0	24	9	27.2727
HAUS5	0	genome.wustl.edu	37	19	36106176	36106176	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36106176	36106176	C	T	SNP	HAUS5	ENST00000203166	human	ensembl	74_37	+1	known	nonsense	c.373	p.R125*	0.000	NULL	NULL	-	no_errors	HAUS5	HGNC	ENSG00000249115				37	0	0	18	6	25
KMT2B	0	genome.wustl.edu	37	19	36223432	36223432	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36223432	36223432	G	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	silent	c.5982	p.A1994	0.956	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333				69	0	0	40	16	28.5714
IGFLR1	0	genome.wustl.edu	37	19	36230720	36230720	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36230720	36230720	G	A	SNP	IGFLR1	ENST00000246532	human	ensembl	74_37	-1	known	silent	c.612	p.C204	0.000	NULL	superfamily_DEATH-like_dom	-	no_errors	IGFLR1	HGNC	ENSG00000126246				186	0	0	93	59	38.8158
NPHS1	0	genome.wustl.edu	37	19	36333366	36333366	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36333366	36333366	T	C	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	silent	c.2421	p.K807	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				152	0	0	80	50	38.4615
NPHS1	0	genome.wustl.edu	37	19	36339017	36339017	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36339017	36339017	G	A	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.1366	p.R456W	0.852	pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270				117	0	0	73	28	27.7228
KIRREL2	0	genome.wustl.edu	37	19	36351456	36351456	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36351456	36351456	G	A	SNP	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	missense	c.815	p.R272H	0.981	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				95	0	0	55	35	38.8889
APLP1	0	genome.wustl.edu	37	19	36370282	36370282	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36370282	36370282	G	A	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1895	p.R632H	0.978	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				125	0	0	68	19	21.8391
ZNF567	0	genome.wustl.edu	37	19	37211524	37211524	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	37211524	37211524	T	G	SNP	ZNF567	ENST00000536254	human	ensembl	74_37	+1	known	missense	c.1898	p.I633S	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF567	HGNC	ENSG00000189042				49	0	0	32	27	45.7627
TJP3	0	genome.wustl.edu	37	19	3730369	3730369	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	3730369	3730369	G	A	SNP	TJP3	ENST00000262968	human	ensembl	74_37	+1	known	missense	c.335	p.R112Q	0.782	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_SH3_2,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS3,prints_ZonOcculdens	-	no_errors	TJP3	HGNC	ENSG00000105289				9	0	0	6	4	40
ZNF571-AS1	0	genome.wustl.edu	37	19	38077712	38077712	+	RNA	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	38077712	38077712	A	T	SNP	ZNF571-AS1	ENST00000585578	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZNF571-AS1	HGNC	ENSG00000267470				27	0	0	12	9	42.8571
ZNF607	0	genome.wustl.edu	37	19	38190535	38190535	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	38190535	38190535	C	T	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	missense	c.497	p.R166H	0.705	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182				103	1	0.961538	54	32	37.2093
MAP4K1	0	genome.wustl.edu	37	19	39108029	39108029	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	39108029	39108029	G	A	SNP	MAP4K1	ENST00000591517	human	ensembl	74_37	-1	known	silent	c.213	p.H71	0.995	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814				77	0	0	46	28	37.8378
LRFN1	0	genome.wustl.edu	37	19	39798594	39798594	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	39798594	39798594	G	A	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	silent	c.1995	p.A665	0.283	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011				11	0	0	7	3	30
SUPT5H	0	genome.wustl.edu	37	19	39963854	39963854	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	39963854	39963854	G	A	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	missense	c.2270	p.R757H	0.998	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235				73	0	0	37	25	40.3226
FCGBP	0	genome.wustl.edu	37	19	40364397	40364397	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	40364397	40364397	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.14245	p.G4749S	0.130	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				62	0	0	22	15	40.5405
FCGBP	0	genome.wustl.edu	37	19	40384083	40384083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	40384083	40384083	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.9527	p.T3176M	0.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				214	0	0	173	34	16.4251
FCGBP	0	genome.wustl.edu	37	19	40424533	40424533	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	40424533	40424533	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.1670	p.S557L	0.008	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				12	0	0	10	5	33.3333
HIPK4	0	genome.wustl.edu	37	19	40886655	40886655	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	40886655	40886655	G	A	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	nonsense	c.1243	p.R415*	0.050	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396				121	0	0	72	35	32.7103
PRX	0	genome.wustl.edu	37	19	40900561	40900561	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	40900561	40900561	G	A	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.3698	p.A1233V	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				81	0	0	36	29	44.6154
LTBP4	0	genome.wustl.edu	37	19	41116547	41116547	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41116547	41116547	C	G	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	missense	c.1995	p.H665Q	0.763	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				15	0	0	11	6	35.2941
LTBP4	0	genome.wustl.edu	37	19	41133678	41133678	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41133678	41133678	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	74_37	+1	known	missense	c.4633	p.G1545S	1.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006				12	0	0	6	3	33.3333
NUMBL	0	genome.wustl.edu	37	19	41188655	41188655	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41188655	41188655	C	T	SNP	NUMBL	ENST00000252891	human	ensembl	74_37	-1	known	missense	c.377	p.R126Q	1.000	pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	pfam_Numb_domain,pfam_PTB/PI_dom,pfam_PTB,smart_PTB/PI_dom,pirsf_Numb/numb-like,pfscan_PTB/PI_dom	-	no_errors	NUMBL	HGNC	ENSG00000105245				68	0	0	41	4	8.88889
ADCK4	0	genome.wustl.edu	37	19	41211331	41211331	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41211331	41211331	G	A	SNP	ADCK4	ENST00000324464	human	ensembl	74_37	-1	known	missense	c.389	p.S130F	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK4	HGNC	ENSG00000123815				84	0	0	60	36	37.5
CYP2A7	0	genome.wustl.edu	37	19	41386063	41386063	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41386063	41386063	C	T	SNP	CYP2A7	ENST00000301146	human	ensembl	74_37	-1	known	missense	c.580	p.E194K	0.999	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I_CYP2B-like	-	no_errors	CYP2A7	HGNC	ENSG00000198077				114	0	0	73	7	8.75
AXL	0	genome.wustl.edu	37	19	41758814	41758814	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41758814	41758814	T	C	SNP	AXL	ENST00000301178	human	ensembl	74_37	+1	known	missense	c.1868	p.M623T	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	AXL	HGNC	ENSG00000167601				107	0	0	74	30	28.8462
CCDC97	0	genome.wustl.edu	37	19	41826288	41826288	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	41826288	41826288	C	T	SNP	CCDC97	ENST00000269967	human	ensembl	74_37	+1	known	missense	c.824	p.S275L	0.846	pfam_DUF2052_coiled-coil	pfam_DUF2052_coiled-coil	-	no_errors	CCDC97	HGNC	ENSG00000142039				76	0	0	42	23	35.3846
ANKRD24	0	genome.wustl.edu	37	19	4207553	4207553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	4207553	4207553	G	A	SNP	ANKRD24	ENST00000318934	human	ensembl	74_37	+1	known	missense	c.593	p.R198H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD24	HGNC	ENSG00000089847				137	0	0	78	41	34.4538
CEACAM5	0	genome.wustl.edu	37	19	42219022	42219022	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42219022	42219022	C	T	SNP	CEACAM5	ENST00000221992	human	ensembl	74_37	+1	known	missense	c.557	p.P186L	0.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM5	HGNC	ENSG00000105388				200	0	0	128	75	36.9458
DMRTC2	0	genome.wustl.edu	37	19	42354689	42354689	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42354689	42354689	A	G	SNP	DMRTC2	ENST00000269945	human	ensembl	74_37	+1	known	silent	c.912	p.S304	0.613	NULL	pfam_DM_DNA-bd,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRTC2	HGNC	ENSG00000142025				51	0	0	39	24	38.0952
ARHGEF1	0	genome.wustl.edu	37	19	42398554	42398554	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42398554	42398554	G	T	SNP	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	missense	c.820	p.A274S	0.503	NULL	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928				50	0	0	35	13	27.0833
ATP1A3	0	genome.wustl.edu	37	19	42485961	42485961	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42485961	42485961	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	silent	c.1215	p.S405	0.028	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				68	0	0	63	6	8.69565
DEDD2	0	genome.wustl.edu	37	19	42703893	42703893	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42703893	42703893	C	T	SNP	DEDD2	ENST00000595337	human	ensembl	74_37	-1	known	silent	c.678	p.A226	0.856	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	DEDD2	HGNC	ENSG00000160570				16	0	0	12	9	42.8571
ZNF526	0	genome.wustl.edu	37	19	42729656	42729656	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42729656	42729656	C	T	SNP	ZNF526	ENST00000301215	human	ensembl	74_37	+1	known	silent	c.1101	p.R367	0.001	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625				84	0	0	45	34	43.038
LIPE	0	genome.wustl.edu	37	19	42911849	42911849	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42911849	42911849	G	A	SNP	LIPE	ENST00000244289	human	ensembl	74_37	-1	known	missense	c.1751	p.T584M	0.062	pfam_HSL_N	pfam_HSL_N,pfam_AB_hydrolase_3,pfam_Steryl_acetyl_hydrolase	-	no_errors	LIPE	HGNC	ENSG00000079435				124	0	0	55	28	33.7349
CEACAM8	0	genome.wustl.edu	37	19	43093151	43093151	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	43093151	43093151	T	A	SNP	CEACAM8	ENST00000244336	human	ensembl	74_37	-1	known	missense	c.743	p.Y248F	0.028	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM8	HGNC	ENSG00000124469				95	0	0	43	33	43.4211
CD177	0	genome.wustl.edu	37	19	43859670	43859670	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	43859670	43859670	C	A	SNP	CD177	ENST00000378012	human	ensembl	74_37	+1	known	missense	c.383	p.P128H	0.000	NULL	NULL	-	no_errors	CD177	HGNC	ENSG00000204936				9	0	0	10	4	28.5714
IRGC	0	genome.wustl.edu	37	19	44223371	44223371	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	44223371	44223371	G	A	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	missense	c.661	p.A221T	0.000	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449				32	0	0	18	20	52.6316
CEACAM19	0	genome.wustl.edu	37	19	45175826	45175826	+	RNA	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	45175826	45175826	G	T	SNP	CEACAM19	ENST00000480278	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CEACAM19	HGNC	ENSG00000186567				79	0	0	65	29	30.8511
SEMA6B	0	genome.wustl.edu	37	19	4556000	4556000	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	4556000	4556000	G	A	SNP	SEMA6B	ENST00000301293	human	ensembl	74_37	-1	known	silent	c.471	p.S157	0.998	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,pfscan_Semap_dom	-	no_errors	SEMA6B	HGNC	ENSG00000167680				81	0	0	12	77	86.5169
ZC3H4	0	genome.wustl.edu	37	19	47569825	47569825	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	47569825	47569825	C	T	SNP	ZC3H4	ENST00000253048	human	ensembl	74_37	-1	known	missense	c.3700	p.A1234T	0.055	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H4	HGNC	ENSG00000130749				15	0	0	8	8	50
DHX34	0	genome.wustl.edu	37	19	47870299	47870299	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	47870299	47870299	C	T	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	missense	c.1655	p.A552V	1.000	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				56	0	0	36	9	20
SLC8A2	0	genome.wustl.edu	37	19	47969508	47969508	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	47969508	47969508	C	T	SNP	SLC8A2	ENST00000236877	human	ensembl	74_37	-1	known	silent	c.153	p.P51	0.370	tigrfam_Na_Ca_Ex	pfam_Calx_beta,pfam_NaCa_Exmemb,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A2	HGNC	ENSG00000118160				25	0	0	10	7	41.1765
EHD2	0	genome.wustl.edu	37	19	48220237	48220237	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48220237	48220237	G	A	SNP	EHD2	ENST00000263277	human	ensembl	74_37	+1	known	missense	c.368	p.R123H	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422				80	0	0	51	20	28.169
CCDC114	0	genome.wustl.edu	37	19	48806955	48806955	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48806955	48806955	G	T	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	missense	c.829	p.L277M	0.983	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				104	0	0	76	42	35.5932
GRIN2D	0	genome.wustl.edu	37	19	48946554	48946554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48946554	48946554	C	T	SNP	GRIN2D	ENST00000263269	human	ensembl	74_37	+1	known	missense	c.3371	p.A1124V	0.981	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464				24	0	0	13	6	31.5789
GRWD1	0	genome.wustl.edu	37	19	48954443	48954443	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48954443	48954443	C	T	SNP	GRWD1	ENST00000253237	human	ensembl	74_37	+1	known	silent	c.978	p.G326	0.311	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	GRWD1	HGNC	ENSG00000105447				79	0	0	30	20	40
FUT2	0	genome.wustl.edu	37	19	49206867	49206867	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49206867	49206867	C	T	SNP	FUT2	ENST00000391876	human	ensembl	74_37	+1	known	silent	c.654	p.A218	0.009	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT2	HGNC	ENSG00000176920				118	0	0	121	11	8.33333
IZUMO1	0	genome.wustl.edu	37	19	49247735	49247735	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49247735	49247735	G	T	SNP	IZUMO1	ENST00000332955	human	ensembl	74_37	-1	known	silent	c.372	p.T124	0.000	NULL	NULL	-	no_errors	IZUMO1	HGNC	ENSG00000182264				68	0	0	52	26	33.3333
FUT1	0	genome.wustl.edu	37	19	49254455	49254455	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49254455	49254455	A	G	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	silent	c.84	p.H28	0.000	NULL	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951				67	0	0	36	14	28
PPFIA3	0	genome.wustl.edu	37	19	49637338	49637338	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49637338	49637338	C	T	SNP	PPFIA3	ENST00000334186	human	ensembl	74_37	+1	known	silent	c.1293	p.S431	0.063	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA3	HGNC	ENSG00000177380				111	0	0	56	38	40.4255
HRC	0	genome.wustl.edu	37	19	49656860	49656860	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49656860	49656860	C	T	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	silent	c.1635	p.E545	0.877	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				21	0	0	7	7	50
PTH2	0	genome.wustl.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49926533	49926533	G	C	SNP	PTH2	ENST00000270631	human	ensembl	74_37	-1	known	missense	c.64	p.L22V	0.132	NULL	NULL	-	no_errors	PTH2	HGNC	ENSG00000142538				21	0	0	19	16	45.7143
PRR12	0	genome.wustl.edu	37	19	50128756	50128756	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50128756	50128756	G	A	SNP	PRR12	ENST00000418929	human	ensembl	74_37	+1	novel	silent	c.6003	p.Q2001	1.000	NULL	NULL	-	no_errors	PRR12	HGNC	ENSG00000126464				15	0	0	14	9	39.1304
SCAF1	0	genome.wustl.edu	37	19	50155638	50155638	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50155638	50155638	G	A	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	silent	c.1992	p.A664	0.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				10	0	0	7	5	41.6667
SCAF1	0	genome.wustl.edu	37	19	50155754	50155754	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50155754	50155754	G	A	SNP	SCAF1	ENST00000360565	human	ensembl	74_37	+1	known	missense	c.2108	p.R703Q	1.000	NULL	NULL	-	no_errors	SCAF1	HGNC	ENSG00000126461				22	0	0	10	7	41.1765
IZUMO2	0	genome.wustl.edu	37	19	50666366	50666366	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50666366	50666366	A	G	SNP	IZUMO2	ENST00000293405	human	ensembl	74_37	-1	known	missense	c.86	p.L29P	0.000	NULL	NULL	-	no_errors	IZUMO2	HGNC	ENSG00000161652				30	0	0	12	9	42.8571
KCNC3	0	genome.wustl.edu	37	19	50826646	50826646	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50826646	50826646	G	T	SNP	KCNC3	ENST00000477616	human	ensembl	74_37	-1	known	missense	c.1564	p.L522M	0.963	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC	ENSG00000131398				85	0	0	43	24	35.8209
MYBPC2	0	genome.wustl.edu	37	19	50939882	50939882	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50939882	50939882	C	A	SNP	MYBPC2	ENST00000357701	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.499	pfam_Ig_I-set,smart_Ig_sub	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPC2	HGNC	ENSG00000086967				88	0	0	49	24	32.8767
SHANK1	0	genome.wustl.edu	37	19	51217127	51217127	+	Silent	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	51217127	51217127	A	T	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	silent	c.720	p.I240	0.798	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				65	0	0	52	10	16.129
KLK10	0	genome.wustl.edu	37	19	51520463	51520463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	51520463	51520463	G	A	SNP	KLK10	ENST00000309958	human	ensembl	74_37	-1	known	missense	c.172	p.P58S	0.979	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK10	HGNC	ENSG00000129451				24	0	0	7	19	73.0769
ZNF836	0	genome.wustl.edu	37	19	52658574	52658574	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	52658574	52658574	G	A	SNP	ZNF836	ENST00000322146	human	ensembl	74_37	-1	known	missense	c.2362	p.R788C	0.190	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF836	HGNC	ENSG00000196267				114	0	0	57	37	39.3617
ZNF766	0	genome.wustl.edu	37	19	52793713	52793713	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	52793713	52793713	C	T	SNP	ZNF766	ENST00000359102	human	ensembl	74_37	+1	known	silent	c.714	p.T238	0.077	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF766	HGNC	ENSG00000196214				37	0	0	41	17	29.3103
ZNF480	0	genome.wustl.edu	37	19	52817449	52817449	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	52817449	52817449	C	T	SNP	ZNF480	ENST00000468240	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	0.908	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF480	HGNC	ENSG00000198464				142	0	0	106	59	35.7576
ZNF816	0	genome.wustl.edu	37	19	53453156	53453156	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	53453156	53453156	A	G	SNP	ZNF816	ENST00000357666	human	ensembl	74_37	-1	known	silent	c.1872	p.N624	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF816	HGNC	ENSG00000180257				136	0	0	100	63	38.6503
NLRP12	0	genome.wustl.edu	37	19	54301519	54301519	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	54301519	54301519	C	T	SNP	NLRP12	ENST00000324134	human	ensembl	74_37	-1	known	missense	c.2905	p.A969T	0.139	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP12	HGNC	ENSG00000142405				73	0	0	36	22	37.931
LILRA6	0	genome.wustl.edu	37	19	54742958	54742958	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	54742958	54742958	G	A	SNP	LILRA6	ENST00000245621	human	ensembl	74_37	-1	known	silent	c.1266	p.H422	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA6	HGNC	ENSG00000244482				83	0	0	69	19	21.5909
LILRA3	0	genome.wustl.edu	37	19	54803262	54803262	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	54803262	54803262	C	A	SNP	LILRA3	ENST00000251390	human	ensembl	74_37	-1	known	missense	c.415	p.G139W	0.117	pirsf_A1B_glyco/leuk_Ig-like_rcpt	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA3	HGNC	ENSG00000170866				145	0	0	134	8	5.6338
LILRA1	0	genome.wustl.edu	37	19	55106616	55106616	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55106616	55106616	C	T	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	missense	c.410	p.S137L	0.192	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974				157	0	0	112	7	5.88235
NLRP2	0	genome.wustl.edu	37	19	55481624	55481624	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55481624	55481624	C	T	SNP	NLRP2	ENST00000448584	human	ensembl	74_37	+1	known	nonsense	c.241	p.R81*	0.012	pfam_DAPIN,superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP2	HGNC	ENSG00000022556				71	0	0	41	24	36.9231
PTPRH	0	genome.wustl.edu	37	19	55693262	55693262	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55693262	55693262	C	T	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	missense	c.3208	p.V1070I	0.978	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031				89	0	0	66	47	41.5929
PTPRH	0	genome.wustl.edu	37	19	55696967	55696967	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55696967	55696967	C	T	SNP	PTPRH	ENST00000376350	human	ensembl	74_37	-1	known	missense	c.2965	p.V989I	0.959	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRH	HGNC	ENSG00000080031				57	0	0	23	13	36.1111
FIZ1	0	genome.wustl.edu	37	19	56104134	56104134	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56104134	56104134	G	A	SNP	FIZ1	ENST00000221665	human	ensembl	74_37	-1	known	silent	c.1173	p.T391	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FIZ1	HGNC	ENSG00000179943				47	0	0	23	14	37.8378
NLRP4	0	genome.wustl.edu	37	19	56390204	56390204	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56390204	56390204	C	T	SNP	NLRP4	ENST00000301295	human	ensembl	74_37	+1	known	missense	c.2741	p.A914V	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP4	HGNC	ENSG00000160505				45	0	0	18	13	41.9355
ZNF444	0	genome.wustl.edu	37	19	56671150	56671150	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56671150	56671150	C	A	SNP	ZNF444	ENST00000337080	human	ensembl	74_37	+1	known	silent	c.564	p.S188	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF444	HGNC	ENSG00000167685				10	0	0	4	4	50
ZNF256	0	genome.wustl.edu	37	19	58452730	58452730	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	58452730	58452730	C	A	SNP	ZNF256	ENST00000282308	human	ensembl	74_37	-1	known	missense	c.1446	p.W482C	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF256	HGNC	ENSG00000152454				66	0	0	38	30	44.1176
ZNF497	0	genome.wustl.edu	37	19	58867745	58867745	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	58867745	58867745	G	A	SNP	ZNF497	ENST00000311044	human	ensembl	74_37	-1	known	silent	c.1257	p.C419	0.987	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF497	HGNC	ENSG00000174586				14	0	0	6	3	33.3333
ZNF324	0	genome.wustl.edu	37	19	58982407	58982407	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	58982407	58982407	C	T	SNP	ZNF324	ENST00000196482	human	ensembl	74_37	+1	known	missense	c.548	p.A183V	0.007	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF324	HGNC	ENSG00000083812				58	0	0	20	21	51.2195
HCN2	0	genome.wustl.edu	37	19	608110	608110	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	608110	608110	C	T	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	silent	c.1365	p.Y455	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822				88	0	0	24	64	72.7273
INSR	0	genome.wustl.edu	37	19	7143042	7143042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	7143042	7143042	G	A	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.2327	p.T776M	0.878	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				51	0	0	40	23	36.5079
INSR	0	genome.wustl.edu	37	19	7170609	7170609	+	Silent	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	7170609	7170609	T	A	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	silent	c.1422	p.G474	0.978	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105				201	0	0	200	12	5.66038
ZNF358	0	genome.wustl.edu	37	19	7585043	7585043	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	7585043	7585043	G	A	SNP	ZNF358	ENST00000394341	human	ensembl	74_37	+1	known	silent	c.915	p.A305	0.992	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF358	HGNC	ENSG00000198816				55	0	0	8	32	80
LRRC8E	0	genome.wustl.edu	37	19	7963631	7963631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	7963631	7963631	G	A	SNP	LRRC8E	ENST00000306708	human	ensembl	74_37	+1	known	missense	c.224	p.R75Q	0.131	NULL	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8E	HGNC	ENSG00000171017				153	0	0	20	115	85.1852
ADAMTS10	0	genome.wustl.edu	37	19	8651494	8651494	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	8651494	8651494	T	C	SNP	ADAMTS10	ENST00000270328	human	ensembl	74_37	-1	known	missense	c.2351	p.Q784R	0.980	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS10	HGNC	ENSG00000142303				103	0	0	18	69	79.3103
MED16	0	genome.wustl.edu	37	19	871999	871999	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	871999	871999	C	T	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	silent	c.2025	p.V675	0.989	pfam_Mediator_Med16	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221				55	0	0	29	17	36.9565
MUC16	0	genome.wustl.edu	37	19	9083880	9083880	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	9083880	9083880	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.7935	p.P2645	0.025	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				38	0	0	25	10	28.5714
OR1M1	0	genome.wustl.edu	37	19	9204168	9204168	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	9204168	9204168	T	C	SNP	OR1M1	ENST00000429566	human	ensembl	74_37	+1	known	missense	c.248	p.V83A	0.174	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1M1	HGNC	ENSG00000170929				63	0	0	21	38	64.4068
REV1	0	genome.wustl.edu	37	2	100058920	100058920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	100058920	100058920	C	T	SNP	REV1	ENST00000258428	human	ensembl	74_37	-1	known	missense	c.362	p.G121E	1.000	superfamily_BRCT_dom,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_DNA_pol_Y-fam_little_finger,smart_BRCT_dom,pirsf_REV1,pfscan_BRCT_dom,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	REV1	HGNC	ENSG00000135945				65	0	0	41	26	38.806
AFF3	0	genome.wustl.edu	37	2	100266104	100266104	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	100266104	100266104	G	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.1243	p.R415C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				91	0	0	60	44	42.3077
PDCL3	0	genome.wustl.edu	37	2	101192912	101192912	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	101192912	101192912	G	A	SNP	PDCL3	ENST00000264254	human	ensembl	74_37	+1	known	missense	c.674	p.R225Q	0.996	NULL	pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Antitoxin_Phd/YefM	-	no_errors	PDCL3	HGNC	ENSG00000115539				54	0	0	28	24	46.1538
RNF149	0	genome.wustl.edu	37	2	101924991	101924991	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	101924991	101924991	C	T	SNP	RNF149	ENST00000295317	human	ensembl	74_37	-1	known	silent	c.60	p.L20	0.807	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF149	HGNC	ENSG00000163162				19	0	0	11	10	47.619
IL1R2	0	genome.wustl.edu	37	2	102641036	102641036	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	102641036	102641036	G	A	SNP	IL1R2	ENST00000332549	human	ensembl	74_37	+1	known	missense	c.793	p.G265S	0.001	pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_IL-1_rcpt_II-typ,prints_IL-1_rcpt_I/II-typ	-	no_errors	IL1R2	HGNC	ENSG00000115590				37	0	0	32	15	31.9149
RGPD4	0	genome.wustl.edu	37	2	108489198	108489198	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	108489198	108489198	A	C	SNP	RGPD4	ENST00000354986	human	ensembl	74_37	+1	known	missense	c.4738	p.S1580R	0.998	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862				269	0	0	193	126	39.4984
SULT1C2P1	0	genome.wustl.edu	37	2	108938844	108938844	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	108938844	108938844	C	T	SNP	SULT1C2P1	ENST00000427208	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SULT1C2P1	HGNC	ENSG00000237223				44	0	0	26	17	39.5349
RANBP2	0	genome.wustl.edu	37	2	109381658	109381658	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	109381658	109381658	C	T	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	nonsense	c.4663	p.R1555*	0.002	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201				202	1	0.492611	122	80	39.604
SH3RF3	0	genome.wustl.edu	37	2	110015252	110015252	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	110015252	110015252	G	A	SNP	SH3RF3	ENST00000309415	human	ensembl	74_37	+1	known	silent	c.1152	p.A384	0.468	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain,pfscan_Znf_RING	-	no_errors	SH3RF3	HGNC	ENSG00000172985				31	0	0	15	13	46.4286
ROCK2	0	genome.wustl.edu	37	2	11359113	11359113	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	11359113	11359113	G	T	SNP	ROCK2	ENST00000315872	human	ensembl	74_37	-1	known	silent	c.1299	p.S433	0.021	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Rho-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_tRNA-bd_arm,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK2	HGNC	ENSG00000134318				41	0	0	24	18	42.8571
MYO7B	0	genome.wustl.edu	37	2	128394393	128394393	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	128394393	128394393	A	G	SNP	MYO7B	ENST00000389524	human	ensembl	74_37	+1	known	missense	c.6157	p.T2053A	1.000	pfscan_FERM_domain	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom	-	no_errors	MYO7B	HGNC	ENSG00000169994				113	0	0	19	28	59.5745
HS6ST1	0	genome.wustl.edu	37	2	129026306	129026306	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	129026306	129026306	C	T	SNP	HS6ST1	ENST00000259241	human	ensembl	74_37	-1	known	silent	c.666	p.P222	0.154	pfam_Sulfotransferase,superfamily_P-loop_NTPase	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST1	HGNC	ENSG00000136720				143	0	0	59	32	35.1648
C2orf27A	0	genome.wustl.edu	37	2	132491526	132491526	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	132491526	132491526	G	A	SNP	C2orf27A	ENST00000463645	human	ensembl	74_37	+1	putative	splice_site	c.NULL	NULL	1.000	-	-	-	no_errors	C2orf27A	HGNC	ENSG00000197927				27	0	0	16	16	50
LCT	0	genome.wustl.edu	37	2	136547367	136547367	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	136547367	136547367	A	C	SNP	LCT	ENST00000264162	human	ensembl	74_37	-1	known	silent	c.5337	p.A1779	1.000	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850				85	0	0	59	23	28.0488
GTDC1	0	genome.wustl.edu	37	2	144899478	144899478	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	144899478	144899478	G	T	SNP	GTDC1	ENST00000344850	human	ensembl	74_37	-1	known	nonsense	c.492	p.Y164*	1.000	pfam_GlycosylTrfase_1_N	pfam_GlycosylTrfase_1_N,pfam_Glyco_trans_1	-	no_errors	GTDC1	HGNC	ENSG00000121964				71	0	0	52	27	34.1772
DDX1	0	genome.wustl.edu	37	2	15760382	15760382	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	15760382	15760382	C	T	SNP	DDX1	ENST00000233084	human	ensembl	74_37	+1	known	silent	c.1257	p.S419	0.096	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_SPRY_rcpt,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_ConA-like_lec_gl_sf,smart_Helicase_ATP-bd,smart_SPla/RYanodine_receptor_subgr,smart_Helicase_C,pfscan_B30.2/SPRY,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX1	HGNC	ENSG00000079785				123	0	0	65	30	31.5789
CCDC148	0	genome.wustl.edu	37	2	159077162	159077162	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	159077162	159077162	G	A	SNP	CCDC148	ENST00000283233	human	ensembl	74_37	-1	known	missense	c.1315	p.R439C	1.000	NULL	NULL	-	no_errors	CCDC148	HGNC	ENSG00000153237				27	0	0	15	10	40
TANC1	0	genome.wustl.edu	37	2	160080864	160080864	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	160080864	160080864	G	A	SNP	TANC1	ENST00000263635	human	ensembl	74_37	+1	known	missense	c.3800	p.G1267E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183				67	0	0	30	18	37.5
LY75	0	genome.wustl.edu	37	2	160667123	160667123	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	160667123	160667123	C	T	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.4613	p.R1538Q	0.996	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219				207	0	0	134	66	33
PXDN	0	genome.wustl.edu	37	2	1652064	1652064	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	1652064	1652064	C	T	SNP	PXDN	ENST00000252804	human	ensembl	74_37	-1	known	missense	c.3488	p.R1163Q	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDN	HGNC	ENSG00000130508				130	1	0.763359	75	39	34.2105
SCN1A	0	genome.wustl.edu	37	2	166908335	166908335	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	166908335	166908335	G	A	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	silent	c.858	p.S286	0.406	pfam_Ion_trans_dom,prints_Na_channel_a1su	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285				58	0	0	34	22	39.2857
FASTKD1	0	genome.wustl.edu	37	2	170393848	170393848	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	170393848	170393848	T	C	SNP	FASTKD1	ENST00000453153	human	ensembl	74_37	-1	known	missense	c.2077	p.I693V	0.015	pfam_FAST_2	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD1	HGNC	ENSG00000138399				85	0	0	93	5	5.10204
CYBRD1	0	genome.wustl.edu	37	2	172379172	172379172	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	172379172	172379172	C	T	SNP	CYBRD1	ENST00000321348	human	ensembl	74_37	+1	known	silent	c.117	p.G39	1.000	pfscan_Cyt_b561/ferric_Rdtase_TM	pfam_Cyt_b561_euk,smart_Cyt_b561/ferric_Rdtase_TM,pfscan_Cyt_b561/ferric_Rdtase_TM	-	no_errors	CYBRD1	HGNC	ENSG00000071967				41	0	0	31	11	26.1905
ATF2	0	genome.wustl.edu	37	2	175962206	175962206	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	175962206	175962206	A	T	SNP	ATF2	ENST00000264110	human	ensembl	74_37	-1	known	nonsense	c.944	p.L315*	0.884	pirsf_TF_cAMP-dep	pfam_bZIP,smart_bZIP,pirsf_TF_cAMP-dep,pfscan_Znf_C2H2,pfscan_bZIP	-	no_errors	ATF2	HGNC	ENSG00000115966				114	0	0	85	42	33.0709
EVX2	0	genome.wustl.edu	37	2	176947159	176947159	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	176947159	176947159	G	A	SNP	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	missense	c.446	p.S149L	0.998	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279				66	0	0	30	22	42.3077
HOXD4	0	genome.wustl.edu	37	2	177017378	177017378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	177017378	177017378	C	T	SNP	HOXD4	ENST00000306324	human	ensembl	74_37	+1	known	missense	c.476	p.T159M	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_antennapedia	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXD4	HGNC	ENSG00000170166				81	0	0	47	23	32.8571
HOXD3	0	genome.wustl.edu	37	2	177036848	177036848	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	177036848	177036848	C	T	SNP	HOXD3	ENST00000249440	human	ensembl	74_37	+1	known	missense	c.1145	p.P382L	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD3	HGNC	ENSG00000128652				43	0	0	20	12	37.5
HOXD1	0	genome.wustl.edu	37	2	177054164	177054164	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	177054164	177054164	G	T	SNP	HOXD1	ENST00000331462	human	ensembl	74_37	+1	known	missense	c.635	p.R212M	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD1	HGNC	ENSG00000128645				50	0	0	33	11	25
TTC30B	0	genome.wustl.edu	37	2	178416830	178416830	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	178416830	178416830	T	C	SNP	TTC30B	ENST00000408939	human	ensembl	74_37	-1	known	missense	c.662	p.Q221R	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	smart_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC30B	HGNC	ENSG00000196659				73	0	0	49	20	28.9855
SMC6	0	genome.wustl.edu	37	2	17899380	17899380	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	17899380	17899380	A	G	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	silent	c.1134	p.D378	0.312	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029				129	0	0	79	44	35.7724
TTN	0	genome.wustl.edu	37	2	179396497	179396497	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179396497	179396497	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.97141	p.R32381C	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				78	0	0	48	30	38.4615
TTN	0	genome.wustl.edu	37	2	179436014	179436014	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179436014	179436014	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.67141	p.E22381K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				118	0	0	64	32	33.3333
TTN	0	genome.wustl.edu	37	2	179454179	179454179	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179454179	179454179	T	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.54569	p.E18190V	1.000	superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				55	0	0	25	17	40.4762
TTN	0	genome.wustl.edu	37	2	179463736	179463736	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179463736	179463736	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.48997	p.M16333V	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				33	0	0	18	17	48.5714
TTN	0	genome.wustl.edu	37	2	179527138	179527138	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179527138	179527138	T	G	SNP	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	missense	c.36966	p.E12322D	0.007	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				57	0	0	46	18	28.125
ENSG00000267784	0	genome.wustl.edu	37	2	179591754	179591754	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179591754	179591754	C	T	SNP	ENSG00000267784	ENST00000590024	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-171I2.1	Clone_based_vega_gene	ENSG00000267784				45	0	0	32	11	25.5814
MYT1L	0	genome.wustl.edu	37	2	1796190	1796190	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	1796190	1796190	T	C	SNP	MYT1L	ENST00000399161	human	ensembl	74_37	-1	known	missense	c.3323	p.K1108R	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487				29	0	0	19	7	26.9231
ZNF385B	0	genome.wustl.edu	37	2	180348060	180348060	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	180348060	180348060	G	A	SNP	ZNF385B	ENST00000410066	human	ensembl	74_37	-1	known	silent	c.609	p.S203	1.000	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	-	no_errors	ZNF385B	HGNC	ENSG00000144331				54	0	0	31	21	40.3846
KCNS3	0	genome.wustl.edu	37	2	18112465	18112465	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	18112465	18112465	G	T	SNP	KCNS3	ENST00000304101	human	ensembl	74_37	+1	known	missense	c.190	p.D64Y	0.996	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv9	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC	ENSG00000170745				102	0	0	62	51	45.1327
ZNF804A	0	genome.wustl.edu	37	2	185801480	185801480	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	185801480	185801480	A	C	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.1357	p.I453L	0.993	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396				86	0	0	61	41	40.1961
FAM171B	0	genome.wustl.edu	37	2	187626790	187626790	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	187626790	187626790	T	C	SNP	FAM171B	ENST00000304698	human	ensembl	74_37	+1	known	missense	c.1721	p.M574T	1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171B	HGNC	ENSG00000144369				68	0	0	39	28	41.791
ENSG00000231689	0	genome.wustl.edu	37	2	189093057	189093057	+	RNA	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	189093057	189093057	A	C	SNP	ENSG00000231689	ENST00000415357	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	AC068718.1	Clone_based_vega_gene	ENSG00000231689				18	0	0	7	12	63.1579
DNAH7	0	genome.wustl.edu	37	2	196852767	196852767	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	196852767	196852767	C	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.1540	p.A514T	0.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997				43	0	0	18	22	55
GTF3C3	0	genome.wustl.edu	37	2	197636558	197636558	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	197636558	197636558	A	G	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	missense	c.2174	p.L725S	0.782	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				79	0	0	36	35	49.2958
MARS2	0	genome.wustl.edu	37	2	198571099	198571099	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	198571099	198571099	C	A	SNP	MARS2	ENST00000282276	human	ensembl	74_37	+1	known	missense	c.970	p.L324M	1.000	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,tigrfam_Met-tRNA_synth	pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,pfam_Cys-tRNA/MSH_ligase,superfamily_tRNAsynth_1a_anticodon-bd,prints_Met-tRNA_synth,tigrfam_Met-tRNA_synth	-	no_errors	MARS2	HGNC	ENSG00000247626				184	0	0	125	76	37.8109
SATB2	0	genome.wustl.edu	37	2	200137060	200137060	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	200137060	200137060	C	A	SNP	SATB2	ENST00000260926	human	ensembl	74_37	-1	known	missense	c.2076	p.E692D	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB2	HGNC	ENSG00000119042				103	0	0	76	40	34.4828
TMEM237	0	genome.wustl.edu	37	2	202488987	202488987	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	202488987	202488987	G	A	SNP	TMEM237	ENST00000409883	human	ensembl	74_37	-1	known	silent	c.1218	p.A406	0.046	NULL	NULL	-	no_errors	TMEM237	HGNC	ENSG00000155755				44	0	0	26	11	29.7297
INO80D	0	genome.wustl.edu	37	2	206872047	206872047	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	206872047	206872047	G	A	SNP	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	missense	c.1879	p.R627W	0.991	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				62	0	0	61	6	8.95522
MDH1B	0	genome.wustl.edu	37	2	207611098	207611098	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	207611098	207611098	C	A	SNP	MDH1B	ENST00000374412	human	ensembl	74_37	-1	known	missense	c.1269	p.E423D	1.000	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	pfam_Lactate/malate_DH_C,superfamily_Lactate_DH/Glyco_Ohase_4_C	-	no_errors	MDH1B	HGNC	ENSG00000138400				49	0	0	31	13	29.5455
CRYGC	0	genome.wustl.edu	37	2	208993062	208993062	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	208993062	208993062	G	A	SNP	CRYGC	ENST00000282141	human	ensembl	74_37	-1	known	silent	c.390	p.C130	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGC	HGNC	ENSG00000163254				79	0	0	47	23	32.8571
CRYGB	0	genome.wustl.edu	37	2	209010699	209010699	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	209010699	209010699	G	A	SNP	CRYGB	ENST00000260988	human	ensembl	74_37	-1	known	silent	c.51	p.Y17	0.982	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,prints_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	-	no_errors	CRYGB	HGNC	ENSG00000182187				77	0	0	59	35	37.234
MAP2	0	genome.wustl.edu	37	2	210560785	210560785	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	210560785	210560785	C	T	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	silent	c.3891	p.T1297	1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				114	0	0	77	43	35.8333
CPS1	0	genome.wustl.edu	37	2	211464228	211464228	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	211464228	211464228	G	A	SNP	CPS1	ENST00000430249	human	ensembl	74_37	+1	known	missense	c.1510	p.A504T	1.000	pfam_CarbamoylP_synth_lsu_N,superfamily_PreATP-grasp_dom,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_CarbamoylP_synth_lsu_oligo,pfam_GATASE,pfam_CarbamoylP_synth_lsu_N,pfam_MGS-like_dom,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu	-	no_errors	CPS1	HGNC	ENSG00000021826				108	0	0	67	43	39.0909
APOB	0	genome.wustl.edu	37	2	21232207	21232207	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	21232207	21232207	T	C	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.7533	p.K2511	0.006	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				80	0	0	44	34	43.5897
ATIC	0	genome.wustl.edu	37	2	216209520	216209520	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	216209520	216209520	C	T	SNP	ATIC	ENST00000236959	human	ensembl	74_37	+1	known	nonsense	c.1246	p.R416*	1.000	pfam_AICARFT_IMPCHas,superfamily_Cytidine_deaminase-like,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	pfam_AICARFT_IMPCHas,pfam_MGS-like_dom,superfamily_Cytidine_deaminase-like,superfamily_MGS-like_dom,smart_MGS-like_dom,smart_AICARFT_IMPCHas,pirsf_AICARFT_IMPCHas,tigrfam_AICARFT_IMPCHas	-	no_errors	ATIC	HGNC	ENSG00000138363				48	0	0	29	24	45.283
FN1	0	genome.wustl.edu	37	2	216286852	216286852	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	216286852	216286852	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.1508	p.R503H	1.000	pfam_Fibronectin_type1,smart_Fibronectin_type1,pfscan_Fibronectin_type1	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414				117	0	0	79	47	37.3016
SMARCAL1	0	genome.wustl.edu	37	2	217285119	217285119	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	217285119	217285119	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	silent	c.960	p.A320	0.000	NULL	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				58	0	0	29	20	40.8163
SMARCAL1	0	genome.wustl.edu	37	2	217315647	217315647	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	217315647	217315647	C	T	SNP	SMARCAL1	ENST00000357276	human	ensembl	74_37	+1	known	missense	c.1930	p.R644W	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_HARP_dom,pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCAL1	HGNC	ENSG00000138375				73	0	0	58	26	30.9524
USP37	0	genome.wustl.edu	37	2	219362579	219362579	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	219362579	219362579	G	A	SNP	USP37	ENST00000258399	human	ensembl	74_37	-1	known	missense	c.1159	p.R387C	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,pfscan_Ubiquitin-int_motif,pfscan_Peptidase_C19/C67	-	no_errors	USP37	HGNC	ENSG00000135913				62	0	0	43	32	42.6667
RNF25	0	genome.wustl.edu	37	2	219529162	219529162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	219529162	219529162	C	T	SNP	RNF25	ENST00000295704	human	ensembl	74_37	-1	known	missense	c.898	p.V300I	0.005	NULL	pfam_RWD-domain,superfamily_UBQ-conjugating_enzyme/RWD,smart_RWD-domain,smart_Znf_RING,pfscan_RWD-domain,pfscan_Znf_RING	-	no_errors	RNF25	HGNC	ENSG00000163481				113	1	0.877193	63	27	30
ASIC4	0	genome.wustl.edu	37	2	220400033	220400033	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	220400033	220400033	G	A	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.1540	p.E514K	0.999	pfam_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182				17	0	0	10	6	37.5
SLC4A3	0	genome.wustl.edu	37	2	220495067	220495067	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	220495067	220495067	C	T	SNP	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	silent	c.885	p.D295	1.000	NULL	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				70	0	0	35	15	30
CCL20	0	genome.wustl.edu	37	2	228681853	228681853	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	228681853	228681853	C	A	SNP	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.101	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009				53	0	0	33	29	46.7742
SPHKAP	0	genome.wustl.edu	37	2	228881735	228881735	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	228881735	228881735	T	C	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.3835	p.S1279G	0.002	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820				84	0	0	50	28	35.8974
ARMC9	0	genome.wustl.edu	37	2	232079734	232079734	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	232079734	232079734	C	T	SNP	ARMC9	ENST00000469789	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARMC9	HGNC	ENSG00000135931				35	0	0	20	15	42.8571
ALPPL2	0	genome.wustl.edu	37	2	233272672	233272672	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	233272672	233272672	G	A	SNP	ALPPL2	ENST00000295453	human	ensembl	74_37	+1	known	missense	c.593	p.R198H	0.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286				159	0	0	80	43	34.9593
EFHD1	0	genome.wustl.edu	37	2	233546345	233546345	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	233546345	233546345	G	T	SNP	EFHD1	ENST00000264059	human	ensembl	74_37	+1	known	missense	c.636	p.E212D	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHD1	HGNC	ENSG00000115468				130	0	0	85	56	39.7163
UGT1A4	0	genome.wustl.edu	37	2	234681073	234681073	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	234681073	234681073	C	T	SNP	UGT1A4	ENST00000373409	human	ensembl	74_37	+1	known	silent	c.1473	p.D491	0.282	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A4	HGNC	ENSG00000244474				138	0	0	85	50	37.037
AGAP1	0	genome.wustl.edu	37	2	237028996	237028996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	237028996	237028996	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.2275	p.E759K	0.994	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985				92	0	0	63	24	27.5862
ESPNL	0	genome.wustl.edu	37	2	239013386	239013386	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	239013386	239013386	A	C	SNP	ESPNL	ENST00000343063	human	ensembl	74_37	+1	known	missense	c.575	p.K192T	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ESPNL	HGNC	ENSG00000144488				18	0	0	12	3	20
HDAC4	0	genome.wustl.edu	37	2	240056118	240056118	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	240056118	240056118	C	T	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.1117	p.A373T	0.362	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024				22	0	0	15	4	21.0526
KIF1A	0	genome.wustl.edu	37	2	241658494	241658494	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	241658494	241658494	C	T	SNP	KIF1A	ENST00000498729	human	ensembl	74_37	-1	known	missense	c.5143	p.V1715M	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1A	HGNC	ENSG00000130294				135	0	0	59	43	42.1569
PASK	0	genome.wustl.edu	37	2	242066771	242066771	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	242066771	242066771	A	G	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	missense	c.1559	p.V520A	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687				172	0	0	96	62	39.2405
HDLBP	0	genome.wustl.edu	37	2	242196109	242196109	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	242196109	242196109	C	T	SNP	HDLBP	ENST00000310931	human	ensembl	74_37	-1	known	missense	c.563	p.R188H	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HDLBP	HGNC	ENSG00000115677				115	0	0	61	45	42.4528
ASXL2	0	genome.wustl.edu	37	2	26101090	26101090	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	26101090	26101090	A	G	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.2	p.M1T	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				156	0	0	92	49	34.7518
C2orf53	0	genome.wustl.edu	37	2	27360918	27360918	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	27360918	27360918	A	G	SNP	C2orf53	ENST00000335524	human	ensembl	74_37	-1	known	missense	c.280	p.S94P	0.025	NULL	NULL	-	no_errors	C2orf53	HGNC	ENSG00000186143				32	0	0	25	11	30.5556
SNX17	0	genome.wustl.edu	37	2	27597016	27597016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	27597016	27597016	G	A	SNP	SNX17	ENST00000233575	human	ensembl	74_37	+1	known	missense	c.497	p.R166Q	1.000	pfscan_Ras-assoc	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234				93	0	0	60	35	36.8421
FOSL2	0	genome.wustl.edu	37	2	28627027	28627027	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	28627027	28627027	C	T	SNP	FOSL2	ENST00000264716	human	ensembl	74_37	+1	known	silent	c.156	p.N52	1.000	prints_Leuzip_Fos	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL2	HGNC	ENSG00000075426				82	0	0	87	10	10.3093
EHD3	0	genome.wustl.edu	37	2	31483572	31483572	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	31483572	31483572	C	T	SNP	EHD3	ENST00000322054	human	ensembl	74_37	+1	known	silent	c.699	p.Y233	0.987	superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD3	HGNC	ENSG00000013016				60	0	0	26	40	60.6061
MEMO1	0	genome.wustl.edu	37	2	32093439	32093439	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	32093439	32093439	C	T	SNP	MEMO1	ENST00000379383	human	ensembl	74_37	-1	known	silent	c.894	p.T298	0.950	NULL	pfam_MEMO1_fam	-	no_errors	MEMO1	HGNC	ENSG00000162959				18	0	0	15	7	31.8182
NLRC4	0	genome.wustl.edu	37	2	32460605	32460605	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	32460605	32460605	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	missense	c.2647	p.A883T	0.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NLRC4	HGNC	ENSG00000091106				62	0	0	81	6	6.89655
BIRC6	0	genome.wustl.edu	37	2	32626547	32626547	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	32626547	32626547	A	T	SNP	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	missense	c.1274	p.E425V	1.000	NULL	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760				88	0	0	50	20	28.5714
FAM98A	0	genome.wustl.edu	37	2	33813510	33813510	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	33813510	33813510	G	A	SNP	FAM98A	ENST00000238823	human	ensembl	74_37	-1	known	silent	c.414	p.G138	1.000	pfam_Uncharacterised_FAM98	pfam_Uncharacterised_FAM98	-	no_errors	FAM98A	HGNC	ENSG00000119812				86	0	0	64	44	40.7407
RPS7	0	genome.wustl.edu	37	2	3628430	3628430	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	3628430	3628430	G	A	SNP	RPS7	ENST00000304921	human	ensembl	74_37	+1	known	silent	c.543	p.T181	0.744	pfam_Ribosomal_S7e	pfam_Ribosomal_S7e	-	no_errors	RPS7	HGNC	ENSG00000171863				39	0	0	23	16	41.0256
CRIM1	0	genome.wustl.edu	37	2	36739444	36739444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	36739444	36739444	C	T	SNP	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	missense	c.1687	p.R563C	1.000	pfam_Antistasin-like,superfamily_Hirudin/antistatin	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938				157	1	0.632911	91	61	40.1316
COLEC11	0	genome.wustl.edu	37	2	3691383	3691383	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	3691383	3691383	C	T	SNP	COLEC11	ENST00000418971	human	ensembl	74_37	+1	known	missense	c.533	p.A178V	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	COLEC11	HGNC	ENSG00000118004				79	0	0	46	26	36.1111
PKDCC	0	genome.wustl.edu	37	2	42282160	42282160	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	42282160	42282160	G	T	SNP	PKDCC	ENST00000294964	human	ensembl	74_37	+1	known	nonsense	c.1114	p.G372*	1.000	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	PKDCC	HGNC	ENSG00000162878				129	0	0	76	34	30.9091
MTA3	0	genome.wustl.edu	37	2	42909709	42909709	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	42909709	42909709	A	G	SNP	MTA3	ENST00000405094	human	ensembl	74_37	+1	known	missense	c.871	p.N291D	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom	-	no_errors	MTA3	HGNC	ENSG00000057935				25	0	0	5	10	66.6667
FAM110C	0	genome.wustl.edu	37	2	45589	45589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	45589	45589	C	T	SNP	FAM110C	ENST00000327669	human	ensembl	74_37	-1	known	missense	c.797	p.G266D	0.471	NULL	NULL	-	no_errors	FAM110C	HGNC	ENSG00000184731				32	0	0	18	13	41.9355
PRKCE	0	genome.wustl.edu	37	2	46313362	46313362	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	46313362	46313362	G	A	SNP	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	missense	c.1453	p.V485I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132				113	0	0	82	44	34.9206
EPAS1	0	genome.wustl.edu	37	2	46605204	46605204	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	46605204	46605204	G	C	SNP	EPAS1	ENST00000263734	human	ensembl	74_37	+1	known	missense	c.1421	p.S474T	0.994	NULL	pfam_PAS_fold_3,pfam_HIF-1_TAD_C,pfam_HIF_alpha_subunit,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,prints_Nuc_translocat,pfscan_PAS,pfscan_bHLH_dom,tigrfam_PAS	-	no_errors	EPAS1	HGNC	ENSG00000116016				18	0	0	1	8	88.8889
TSPYL6	0	genome.wustl.edu	37	2	54482354	54482354	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	54482354	54482354	A	G	SNP	TSPYL6	ENST00000317802	human	ensembl	74_37	-1	known	missense	c.935	p.V312A	0.979	pfam_NAP_family	pfam_NAP_family	-	no_errors	TSPYL6	HGNC	ENSG00000178021				103	0	0	59	43	42.1569
BCL11A	0	genome.wustl.edu	37	2	60688652	60688652	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	60688652	60688652	G	T	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	silent	c.1395	p.S465	0.360	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				47	0	0	22	16	42.1053
BCL11A	0	genome.wustl.edu	37	2	60688858	60688858	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	60688858	60688858	G	A	SNP	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	missense	c.1189	p.R397C	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				126	0	0	85	54	38.8489
USP34	0	genome.wustl.edu	37	2	61552563	61552563	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	61552563	61552563	C	T	SNP	USP34	ENST00000398571	human	ensembl	74_37	-1	known	missense	c.2960	p.R987H	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP34	HGNC	ENSG00000115464				44	0	0	33	11	25
UGP2	0	genome.wustl.edu	37	2	64085069	64085069	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	64085069	64085069	C	T	SNP	UGP2	ENST00000337130	human	ensembl	74_37	+1	known	missense	c.254	p.S85L	1.000	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	pfam_UDPGP_trans,pirsf_UDPGP_trans_subgr	-	no_errors	UGP2	HGNC	ENSG00000169764				117	0	0	89	44	33.0827
MEIS1	0	genome.wustl.edu	37	2	66667042	66667042	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	66667042	66667042	G	A	SNP	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	missense	c.307	p.E103K	1.000	NULL	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				29	0	0	14	6	30
MEIS1	0	genome.wustl.edu	37	2	66775109	66775109	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	66775109	66775109	T	C	SNP	MEIS1	ENST00000407092	human	ensembl	74_37	+1	known	missense	c.923	p.L308S	1.000	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS1	HGNC	ENSG00000143995				63	0	0	52	19	26.7606
GMCL1	0	genome.wustl.edu	37	2	70096881	70096881	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	70096881	70096881	G	A	SNP	GMCL1	ENST00000282570	human	ensembl	74_37	+1	known	missense	c.1249	p.G417S	1.000	NULL	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	GMCL1	HGNC	ENSG00000087338				75	0	0	53	35	39.7727
MXD1	0	genome.wustl.edu	37	2	70164383	70164383	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	70164383	70164383	A	G	SNP	MXD1	ENST00000264444	human	ensembl	74_37	+1	known	missense	c.335	p.D112G	1.000	superfamily_bHLH_dom,smart_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD1	HGNC	ENSG00000059728				142	0	0	76	68	47.2222
TIA1	0	genome.wustl.edu	37	2	70454867	70454867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	70454867	70454867	G	A	SNP	TIA1	ENST00000433529	human	ensembl	74_37	-1	known	missense	c.398	p.S133L	1.000	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001				75	0	0	56	31	35.6322
ZNF638	0	genome.wustl.edu	37	2	71658542	71658542	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	71658542	71658542	G	A	SNP	ZNF638	ENST00000264447	human	ensembl	74_37	+1	known	silent	c.5736	p.A1912	0.004	NULL	pfam_RRM_dom,smart_Znf_U1,smart_Znf_C2H2-like,smart_RRM_dom,pfscan_Znf_C2H2_matrin,pfscan_RRM_dom	-	no_errors	ZNF638	HGNC	ENSG00000075292				46	0	0	36	24	40
DYSF	0	genome.wustl.edu	37	2	71801427	71801427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	71801427	71801427	C	T	SNP	DYSF	ENST00000413539	human	ensembl	74_37	+1	known	missense	c.3367	p.R1123C	1.000	smart_Peroxin/Ferlin	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,superfamily_MFS_dom_general_subst_transpt,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	DYSF	HGNC	ENSG00000135636				193	1	0.515464	106	70	39.7727
TET3	0	genome.wustl.edu	37	2	74274599	74274599	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74274599	74274599	G	A	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	missense	c.1150	p.D384N	0.240	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				33	0	0	17	15	46.875
TET3	0	genome.wustl.edu	37	2	74328868	74328868	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74328868	74328868	C	T	SNP	TET3	ENST00000409262	human	ensembl	74_37	+1	known	silent	c.4548	p.I1516	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605				124	0	0	52	32	38.0952
SLC4A5	0	genome.wustl.edu	37	2	74491388	74491388	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74491388	74491388	G	A	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	missense	c.601	p.R201W	0.043	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687				61	0	0	39	38	49.3506
DCTN1	0	genome.wustl.edu	37	2	74589792	74589792	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74589792	74589792	G	A	SNP	DCTN1	ENST00000361874	human	ensembl	74_37	-1	known	silent	c.3594	p.T1198	1.000	NULL	pfam_Dynactin,pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,superfamily_Polyketide_synth_docking,superfamily_P-loop_NTPase,pfscan_CAP-Gly_domain	-	no_errors	DCTN1	HGNC	ENSG00000204843				32	0	0	18	12	40
LRRTM4	0	genome.wustl.edu	37	2	77745718	77745718	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	77745718	77745718	A	G	SNP	LRRTM4	ENST00000409911	human	ensembl	74_37	-1	known	missense	c.1280	p.I427T	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM4	HGNC	ENSG00000176204				72	0	0	47	26	35.6164
TCF7L1	0	genome.wustl.edu	37	2	85533374	85533374	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	85533374	85533374	C	T	SNP	TCF7L1	ENST00000282111	human	ensembl	74_37	+1	known	silent	c.1035	p.H345	0.482	superfamily_HMG_box_dom,smart_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	TCF7L1	HGNC	ENSG00000152284				60	0	0	30	19	38.7755
VAMP5	0	genome.wustl.edu	37	2	85818963	85818963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	85818963	85818963	G	A	SNP	VAMP5	ENST00000306384	human	ensembl	74_37	+1	known	missense	c.119	p.R40H	1.000	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin,pfscan_Synaptobrevin	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,prints_Synaptobrevin,pfscan_Synaptobrevin	-	no_errors	VAMP5	HGNC	ENSG00000168899				138	0	0	67	55	45.082
SFTPB	0	genome.wustl.edu	37	2	85892896	85892896	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	85892896	85892896	G	A	SNP	SFTPB	ENST00000393822	human	ensembl	74_37	-1	known	missense	c.451	p.H151Y	0.000	pfam_SapB_2,superfamily_Saposin-like,smart_SaposinB,pfscan_SaposinB,prints_Saposin	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878				62	0	0	48	31	39.2405
KDM3A	0	genome.wustl.edu	37	2	86676934	86676934	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	86676934	86676934	G	A	SNP	KDM3A	ENST00000312912	human	ensembl	74_37	+1	known	missense	c.191	p.C64Y	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3A	HGNC	ENSG00000115548				74	0	0	56	28	33.3333
ENSG00000240040	0	genome.wustl.edu	37	2	89111172	89111172	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	89111172	89111172	T	C	SNP	ENSG00000240040	ENST00000452230	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	AC096579.13	Clone_based_vega_gene	ENSG00000240040				51	0	0	23	10	30.303
ANKRD23	0	genome.wustl.edu	37	2	97506239	97506239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	97506239	97506239	C	T	SNP	ANKRD23	ENST00000318357	human	ensembl	74_37	-1	known	missense	c.439	p.A147T	0.996	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD23	HGNC	ENSG00000163126				45	0	0	30	11	26.8293
JAG1	0	genome.wustl.edu	37	20	10629262	10629262	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	10629262	10629262	A	G	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.1504	p.C502R	1.000	pfam_EG-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				54	0	0	25	16	39.0244
ISM1	0	genome.wustl.edu	37	20	13279773	13279773	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	13279773	13279773	C	T	SNP	ISM1	ENST00000262487	human	ensembl	74_37	+1	known	silent	c.1062	p.P354	0.999	pfam_AMOP,smart_AMOP,pfscan_AMOP	pfam_AMOP,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_AMOP,pfscan_AMOP,pfscan_Thrombospondin_1_rpt	-	no_errors	ISM1	HGNC	ENSG00000101230				24	0	0	16	5	23.8095
NINL	0	genome.wustl.edu	37	20	25442243	25442243	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	25442243	25442243	T	C	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.3611	p.E1204G	0.996	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004				65	0	0	32	27	45.7627
DEFB118	0	genome.wustl.edu	37	20	29960908	29960908	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	29960908	29960908	G	T	SNP	DEFB118	ENST00000253381	human	ensembl	74_37	+1	known	missense	c.307	p.V103F	0.000	NULL	NULL	-	no_errors	DEFB118	HGNC	ENSG00000131068				75	0	0	33	33	50
SNTA1	0	genome.wustl.edu	37	20	32000508	32000508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	32000508	32000508	G	A	SNP	SNTA1	ENST00000217381	human	ensembl	74_37	-1	known	missense	c.782	p.A261V	0.868	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_Pleckstrin_homology,smart_PDZ,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTA1	HGNC	ENSG00000101400				31	0	0	24	27	52.9412
SLC4A11	0	genome.wustl.edu	37	20	3211445	3211445	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	3211445	3211445	G	A	SNP	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	silent	c.1344	p.Y448	0.919	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836				70	0	0	39	21	35
CEP250	0	genome.wustl.edu	37	20	34092805	34092805	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	34092805	34092805	A	C	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.6608	p.E2203A	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001				32	0	0	23	10	30.303
DLGAP4	0	genome.wustl.edu	37	20	35127677	35127677	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	35127677	35127677	G	A	SNP	DLGAP4	ENST00000373913	human	ensembl	74_37	+1	known	silent	c.2043	p.S681	1.000	pfam_GKAP	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845				56	0	0	33	25	43.1034
SOGA1	0	genome.wustl.edu	37	20	35444560	35444560	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	35444560	35444560	C	T	SNP	SOGA1	ENST00000237536	human	ensembl	74_37	-1	known	missense	c.1285	p.A429T	0.943	pfam_SOGA	pfam_SOGA	-	no_errors	SOGA1	HGNC	ENSG00000149639				59	0	0	41	21	33.871
CTNNBL1	0	genome.wustl.edu	37	20	36470697	36470697	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	36470697	36470697	G	A	SNP	CTNNBL1	ENST00000472237	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CTNNBL1	HGNC	ENSG00000132792				21	0	0	18	10	35.7143
TTI1	0	genome.wustl.edu	37	20	36640541	36640541	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	36640541	36640541	T	C	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.1678	p.I560V	0.126	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407				151	0	0	102	80	43.956
PPP1R16B	0	genome.wustl.edu	37	20	37536791	37536791	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	37536791	37536791	C	T	SNP	PPP1R16B	ENST00000299824	human	ensembl	74_37	+1	known	silent	c.1149	p.N383	0.107	pirsf_Pase-1_reg_su_16AB_euk	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R16B	HGNC	ENSG00000101445				77	0	0	40	23	36.5079
CHD6	0	genome.wustl.edu	37	20	40045241	40045241	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	40045241	40045241	G	A	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.6473	p.A2158V	0.632	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177				118	0	0	82	50	37.8788
PABPC1L	0	genome.wustl.edu	37	20	43545401	43545401	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	43545401	43545401	C	T	SNP	PABPC1L	ENST00000217073	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	0.980	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC1L	HGNC	ENSG00000101104				197	0	0	115	55	32.3529
SPATA25	0	genome.wustl.edu	37	20	44515246	44515246	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44515246	44515246	C	T	SNP	SPATA25	ENST00000372519	human	ensembl	74_37	-1	known	silent	c.594	p.A198	0.000	NULL	NULL	-	no_errors	SPATA25	HGNC	ENSG00000149634				126	0	0	59	45	43.2692
CTSA	0	genome.wustl.edu	37	20	44527008	44527008	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44527008	44527008	C	T	SNP	CTSA	ENST00000372484	human	ensembl	74_37	+1	known	silent	c.1416	p.G472	0.357	pfam_Peptidase_S10,prints_Peptidase_S10	pfam_Peptidase_S10,prints_Peptidase_S10	-	no_errors	CTSA	HGNC	ENSG00000064601				32	0	0	17	8	32
MMP9	0	genome.wustl.edu	37	20	44639150	44639150	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44639150	44639150	C	T	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.400	p.R134W	0.636	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				68	0	0	37	26	41.2698
MMP9	0	genome.wustl.edu	37	20	44641102	44641102	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44641102	44641102	G	A	SNP	MMP9	ENST00000372330	human	ensembl	74_37	+1	known	missense	c.1211	p.G404D	1.000	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo,prints_Pept_M10A	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_PT,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP9	HGNC	ENSG00000100985				84	0	0	56	31	35.6322
SLC12A5	0	genome.wustl.edu	37	20	44669091	44669091	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44669091	44669091	G	A	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.761	p.R254H	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				70	0	0	42	29	40.8451
SLC12A5	0	genome.wustl.edu	37	20	44671923	44671923	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44671923	44671923	T	G	SNP	SLC12A5	ENST00000454036	human	ensembl	74_37	+1	known	missense	c.1267	p.F423V	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A5	HGNC	ENSG00000124140				291	0	0	128	113	46.888
ELMO2	0	genome.wustl.edu	37	20	44997547	44997547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44997547	44997547	C	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.1981	p.A661T	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				155	0	0	95	41	30.1471
ELMO2	0	genome.wustl.edu	37	20	45017707	45017707	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	45017707	45017707	G	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	silent	c.396	p.L132	0.178	pfam_DUF3361,superfamily_ARM-type_fold	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598				93	0	0	43	25	36.7647
SLC2A10	0	genome.wustl.edu	37	20	45354006	45354006	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	45354006	45354006	G	A	SNP	SLC2A10	ENST00000359271	human	ensembl	74_37	+1	known	missense	c.331	p.A111T	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A10	HGNC	ENSG00000197496				103	0	0	54	35	39.3258
SULF2	0	genome.wustl.edu	37	20	46295140	46295140	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	46295140	46295140	C	T	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	missense	c.1669	p.A557T	0.002	pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				110	0	0	68	36	34.6154
SULF2	0	genome.wustl.edu	37	20	46307454	46307454	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	46307454	46307454	G	T	SNP	SULF2	ENST00000359930	human	ensembl	74_37	-1	known	missense	c.1159	p.L387I	1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF2	HGNC	ENSG00000196562				201	0	0	137	60	30.4569
ARFGEF2	0	genome.wustl.edu	37	20	47605105	47605105	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	47605105	47605105	G	T	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.2439	p.E813D	0.871	pfam_Sec7_dom,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				95	0	0	47	38	44.7059
SLC9A8	0	genome.wustl.edu	37	20	48472053	48472053	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	48472053	48472053	C	T	SNP	SLC9A8	ENST00000417961	human	ensembl	74_37	+1	known	silent	c.696	p.P232	0.001	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A8	HGNC	ENSG00000197818				114	0	0	55	37	40.2174
PTPN1	0	genome.wustl.edu	37	20	49196318	49196318	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	49196318	49196318	C	T	SNP	PTPN1	ENST00000371621	human	ensembl	74_37	+1	known	nonsense	c.943	p.R315*	0.980	pirsf_Ptpn1/Ptpn2	pirsf_Ptpn1/Ptpn2,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN1	HGNC	ENSG00000196396				120	0	0	61	37	37.7551
RTFDC1	0	genome.wustl.edu	37	20	55093208	55093208	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	55093208	55093208	G	A	SNP	RTFDC1	ENST00000357348	human	ensembl	74_37	+1	known	missense	c.898	p.A300T	0.982	pfam_Rtf2_RING-finger	pfam_Rtf2_RING-finger	-	no_errors	RTFDC1	HGNC	ENSG00000022277				77	0	0	52	33	38.8235
STX16-NPEPL1	0	genome.wustl.edu	37	20	57246273	57246273	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	57246273	57246273	C	T	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	74_37	+1	known	nonsense	c.712	p.R238*	1.000	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995				100	0	0	55	41	42.7083
GNAS	0	genome.wustl.edu	37	20	57485424	57485424	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	57485424	57485424	C	T	SNP	GNAS	ENST00000354359	human	ensembl	74_37	+1	known	missense	c.1009	p.R337W	1.000	pfam_Gprotein_alpha_su,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				82	0	0	37	17	31.4815
SLMO2	0	genome.wustl.edu	37	20	57612316	57612316	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	57612316	57612316	G	A	SNP	SLMO2	ENST00000355937	human	ensembl	74_37	-1	known	missense	c.221	p.T74M	1.000	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	pfam_PRELI/MSF1,pfscan_PRELI/MSF1	-	no_errors	SLMO2	HGNC	ENSG00000101166				29	0	0	13	8	38.0952
ZNF831	0	genome.wustl.edu	37	20	57766438	57766438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	57766438	57766438	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.364	p.P122S	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				49	0	0	26	14	35
LAMA5	0	genome.wustl.edu	37	20	60887229	60887229	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	60887229	60887229	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.9504	p.P3168	0.968	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702				13	0	0	5	6	54.5455
BHLHE23	0	genome.wustl.edu	37	20	61637728	61637728	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	61637728	61637728	G	A	SNP	BHLHE23	ENST00000370346	human	ensembl	74_37	-1	known	silent	c.351	p.N117	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE23	HGNC	ENSG00000125533				29	0	0	9	14	60.8696
COL20A1	0	genome.wustl.edu	37	20	61941805	61941805	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	61941805	61941805	G	A	SNP	COL20A1	ENST00000326996	human	ensembl	74_37	+1	known	missense	c.1336	p.V446M	0.801	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL20A1	HGNC	ENSG00000101203				22	0	0	12	7	36.8421
CHRNA4	0	genome.wustl.edu	37	20	61981737	61981737	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	61981737	61981737	G	T	SNP	CHRNA4	ENST00000370263	human	ensembl	74_37	-1	known	silent	c.1026	p.T342	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA4	HGNC	ENSG00000101204				69	0	0	75	4	5.06329
DNAJC5	0	genome.wustl.edu	37	20	62560719	62560719	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	62560719	62560719	G	A	SNP	DNAJC5	ENST00000360864	human	ensembl	74_37	+1	known	silent	c.162	p.A54	0.993	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5	HGNC	ENSG00000101152				48	0	0	31	25	44.6429
UCKL1	0	genome.wustl.edu	37	20	62571561	62571561	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	62571561	62571561	G	A	SNP	UCKL1	ENST00000354216	human	ensembl	74_37	-1	known	silent	c.1509	p.I503	1.000	NULL	pfam_PRK/URK,pfam_CPT,superfamily_P-loop_NTPase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCKL1	HGNC	ENSG00000198276				56	0	0	30	17	36.1702
ZNF512B	0	genome.wustl.edu	37	20	62597786	62597786	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	62597786	62597786	C	T	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	missense	c.742	p.V248I	0.089	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512B	HGNC	ENSG00000196700				497	0	0	248	120	32.6087
DEFB125	0	genome.wustl.edu	37	20	76799	76799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	76799	76799	C	T	SNP	DEFB125	ENST00000382410	human	ensembl	74_37	+1	known	missense	c.212	p.P71L	0.000	NULL	NULL	-	no_errors	DEFB125	HGNC	ENSG00000178591				167	0	0	108	57	34.5455
TPTE	0	genome.wustl.edu	37	21	10951271	10951271	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	10951271	10951271	T	C	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	silent	c.441	p.V147	0.982	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				88	0	0	66	15	18.5185
TPTE	0	genome.wustl.edu	37	21	10996060	10996060	+	RNA	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	10996060	10996060	G	T	SNP	TPTE	ENST00000415664	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	TPTE	HGNC	ENSG00000166157				58	0	0	38	12	24
GABPA	0	genome.wustl.edu	37	21	27137032	27137032	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	27137032	27137032	C	T	SNP	GABPA	ENST00000354828	human	ensembl	74_37	+1	known	missense	c.1070	p.A357V	1.000	pfam_Ets_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	pfam_GABP_asu_N,pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pirsf_TF_GA-bd_asu,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	GABPA	HGNC	ENSG00000154727				79	0	0	67	34	33.6634
SYNJ1	0	genome.wustl.edu	37	21	34058147	34058147	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	34058147	34058147	C	A	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	missense	c.1146	p.K382N	0.436	pfam_Syja_N,pfscan_Syja_N	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082				75	0	0	70	4	5.40541
KCNJ6	0	genome.wustl.edu	37	21	38997730	38997730	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	38997730	38997730	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	missense	c.1003	p.R335W	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542				62	0	0	39	19	32.7586
BRWD1	0	genome.wustl.edu	37	21	40627704	40627704	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	40627704	40627704	G	A	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.2122	p.R708C	0.973	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658				59	0	0	44	20	31.25
ABCG1	0	genome.wustl.edu	37	21	43702507	43702507	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	43702507	43702507	A	G	SNP	ABCG1	ENST00000398437	human	ensembl	74_37	+1	known	missense	c.1150	p.M384V	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	pfam_ABC_2_trans,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Pigment_permease	-	no_errors	ABCG1	HGNC	ENSG00000160179				46	0	0	41	24	36.9231
TRPM2	0	genome.wustl.edu	37	21	45784127	45784127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	45784127	45784127	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.385	p.D129N	1.000	NULL	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				94	0	0	60	24	28.5714
TRPM2	0	genome.wustl.edu	37	21	45833790	45833790	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	45833790	45833790	G	A	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	silent	c.2979	p.P993	0.004	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185				231	0	0	134	89	39.9103
TSPEAR	0	genome.wustl.edu	37	21	45924736	45924736	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	45924736	45924736	C	A	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	nonsense	c.1783	p.G595*	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				82	0	0	44	24	35.2941
TSPEAR	0	genome.wustl.edu	37	21	45947323	45947323	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	45947323	45947323	C	T	SNP	TSPEAR	ENST00000323084	human	ensembl	74_37	-1	known	missense	c.1001	p.R334H	0.003	pfscan_EAR	pfam_EPTP,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_EAR	-	no_errors	TSPEAR	HGNC	ENSG00000175894				120	0	0	57	49	46.2264
KRTAP10-10	0	genome.wustl.edu	37	21	46057780	46057780	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	46057780	46057780	C	A	SNP	KRTAP10-10	ENST00000380095	human	ensembl	74_37	+1	known	missense	c.446	p.P149H	0.002	NULL	NULL	-	no_errors	KRTAP10-10	HGNC	ENSG00000221859				339	0	0	208	139	40.0576
PCBP3	0	genome.wustl.edu	37	21	47333910	47333910	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	47333910	47333910	T	A	SNP	PCBP3	ENST00000400314	human	ensembl	74_37	+1	known	missense	c.646	p.S216T	1.000	NULL	pfam_KH_dom_type_1,pfam_KH_dom_type_2,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	PCBP3	HGNC	ENSG00000183570				87	0	0	46	32	41.0256
CECR1	0	genome.wustl.edu	37	22	17687997	17687997	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	17687997	17687997	C	T	SNP	CECR1	ENST00000262607	human	ensembl	74_37	-1	known	missense	c.506	p.R169Q	0.018	tigrfam_Ad_deam-like	pfam_A/AMP_deaminase_dom,pfam_A_deaminase_N,tigrfam_Ad_deam-like	-	no_errors	CECR1	HGNC	ENSG00000093072				78	0	0	36	25	40.9836
DGCR2	0	genome.wustl.edu	37	22	19048366	19048366	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	19048366	19048366	G	T	SNP	DGCR2	ENST00000545799	human	ensembl	74_37	-1	known	missense	c.719	p.P240H	0.001	NULL	pfam_LDrepeatLR_classA_rpt,superfamily_C-type_lectin_fold,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_C-type_lectin,pfscan_LDrepeatLR_classA_rpt	-	no_errors	DGCR2	HGNC	ENSG00000070413				19	0	0	18	12	40
HIRA	0	genome.wustl.edu	37	22	19344515	19344515	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	19344515	19344515	C	T	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.2294	p.R765H	1.000	pfam_Hira	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084				202	0	0	132	75	36.2319
COMT	0	genome.wustl.edu	37	22	19956139	19956139	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	19956139	19956139	C	T	SNP	COMT	ENST00000361682	human	ensembl	74_37	+1	known	silent	c.696	p.H232	0.636	pirsf_Catechol_O-MeTrfase_euk	pfam_O-MeTrfase_3,pirsf_Catechol_O-MeTrfase_euk	-	no_errors	COMT	HGNC	ENSG00000093010				52	0	0	27	18	40
ZDHHC8	0	genome.wustl.edu	37	22	20131181	20131181	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	20131181	20131181	G	A	SNP	ZDHHC8	ENST00000405930	human	ensembl	74_37	+1	known	silent	c.2028	p.P676	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Plexin-like_fold,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC8	HGNC	ENSG00000099904				16	0	0	7	3	30
ZNF74	0	genome.wustl.edu	37	22	20759882	20759882	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	20759882	20759882	G	A	SNP	ZNF74	ENST00000356671	human	ensembl	74_37	+1	known	missense	c.559	p.A187T	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF74	HGNC	ENSG00000185252				27	0	0	6	13	68.4211
KLHL22	0	genome.wustl.edu	37	22	20796462	20796462	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	20796462	20796462	C	T	SNP	KLHL22	ENST00000328879	human	ensembl	74_37	-1	known	silent	c.1803	p.P601	0.000	NULL	pfam_Kelch_1,pfam_BTB_POZ,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL22	HGNC	ENSG00000099910				34	0	0	20	10	33.3333
HIC2	0	genome.wustl.edu	37	22	21799658	21799658	+	Silent	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	21799658	21799658	G	C	SNP	HIC2	ENST00000407464	human	ensembl	74_37	+1	known	silent	c.474	p.R158	0.928	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	HIC2	HGNC	ENSG00000169635				17	0	0	7	8	53.3333
UPB1	0	genome.wustl.edu	37	22	24911250	24911250	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	24911250	24911250	G	A	SNP	UPB1	ENST00000326010	human	ensembl	74_37	+1	known	missense	c.703	p.G235R	1.000	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024				110	0	0	70	49	41.1765
CRYBB1	0	genome.wustl.edu	37	22	27008142	27008142	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	27008142	27008142	C	T	SNP	CRYBB1	ENST00000215939	human	ensembl	74_37	-1	known	missense	c.193	p.E65K	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYBB1	HGNC	ENSG00000100122				62	0	0	14	50	78.125
TBC1D10A	0	genome.wustl.edu	37	22	30690039	30690039	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	30690039	30690039	C	T	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	missense	c.766	p.A256T	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992				134	0	0	51	37	42.0455
PES1	0	genome.wustl.edu	37	22	30980630	30980630	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	30980630	30980630	G	A	SNP	PES1	ENST00000354694	human	ensembl	74_37	-1	known	missense	c.443	p.P148L	1.000	pfam_Pescadillo	pfam_Pescadillo,pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PES1	HGNC	ENSG00000100029				37	0	0	14	13	48.1481
RASD2	0	genome.wustl.edu	37	22	35943100	35943100	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	35943100	35943100	G	A	SNP	RASD2	ENST00000216127	human	ensembl	74_37	+1	known	missense	c.244	p.A82T	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASD2	HGNC	ENSG00000100302				90	0	0	27	65	70.6522
TMPRSS6	0	genome.wustl.edu	37	22	37482393	37482393	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	37482393	37482393	G	A	SNP	TMPRSS6	ENST00000381792	human	ensembl	74_37	-1	known	silent	c.903	p.V301	1.000	pirsf_Pept_S1A_matriptase-2,superfamily_CUB_dom	pirsf_Pept_S1A_matriptase-2,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	TMPRSS6	HGNC	ENSG00000187045				25	0	0	6	21	77.7778
ELFN2	0	genome.wustl.edu	37	22	37771065	37771065	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	37771065	37771065	G	T	SNP	ELFN2	ENST00000402918	human	ensembl	74_37	-1	known	silent	c.510	p.T170	1.000	smart_Leu-rich_rpt_typical-subtyp	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897				97	0	0	53	30	36.1446
TRIOBP	0	genome.wustl.edu	37	22	38111795	38111795	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	38111795	38111795	A	C	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.482	p.E161A	0.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106				46	0	0	16	5	23.8095
SOX10	0	genome.wustl.edu	37	22	38373922	38373922	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	38373922	38373922	G	T	SNP	SOX10	ENST00000360880	human	ensembl	74_37	-1	known	missense	c.649	p.P217T	0.997	NULL	pfam_Sox_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX10	HGNC	ENSG00000100146				37	0	0	49	5	9.25926
KCNJ4	0	genome.wustl.edu	37	22	38824088	38824088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	38824088	38824088	C	T	SNP	KCNJ4	ENST00000303592	human	ensembl	74_37	-1	known	missense	c.50	p.R17H	1.000	pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.3	-	no_errors	KCNJ4	HGNC	ENSG00000168135				406	0	0	221	145	39.6175
CACNA1I	0	genome.wustl.edu	37	22	40055783	40055783	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	40055783	40055783	G	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.2548	p.A850T	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346				120	1	0.826446	98	15	13.2743
EP300	0	genome.wustl.edu	37	22	41572350	41572350	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	41572350	41572350	C	T	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.4879	p.R1627W	1.000	NULL	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				126	0	0	112	6	5.08475
RANGAP1	0	genome.wustl.edu	37	22	41650492	41650492	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	41650492	41650492	G	A	SNP	RANGAP1	ENST00000356244	human	ensembl	74_37	-1	known	silent	c.1080	p.D360	0.960	NULL	pfam_Ran_GTPase_activating_1_C,superfamily_Ran_GTPase_activating_1_C,smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	RANGAP1	HGNC	ENSG00000100401				155	0	0	72	48	40
ZC3H7B	0	genome.wustl.edu	37	22	41745305	41745305	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	41745305	41745305	G	T	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	missense	c.1948	p.G650C	1.000	NULL	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403				91	0	0	84	7	7.69231
PHF5A	0	genome.wustl.edu	37	22	41864625	41864625	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	41864625	41864625	G	A	SNP	PHF5A	ENST00000216252	human	ensembl	74_37	-1	known	silent	c.33	p.C11	1.000	pfam_PHF5,pirsf_PHF5	pfam_PHF5,pirsf_PHF5	-	no_errors	PHF5A	HGNC	ENSG00000100410				54	0	0	16	41	71.9298
A4GALT	0	genome.wustl.edu	37	22	43089474	43089474	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	43089474	43089474	C	T	SNP	A4GALT	ENST00000249005	human	ensembl	74_37	-1	known	missense	c.484	p.V162M	0.000	pfam_GlycoTrfase_DXD_sugar-bd_CS	pfam_A1-4-GlycosylTfrase_dom,pfam_GlycoTrfase_DXD_sugar-bd_CS	-	no_errors	A4GALT	HGNC	ENSG00000128274				79	0	0	46	18	28.125
KIAA0930	0	genome.wustl.edu	37	22	45599828	45599828	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	45599828	45599828	G	T	SNP	KIAA0930	ENST00000251993	human	ensembl	74_37	-1	known	silent	c.570	p.V190	1.000	pfam_DUF2045	pfam_DUF2045	-	no_errors	KIAA0930	HGNC	ENSG00000100364				79	0	0	60	5	7.69231
FAM118A	0	genome.wustl.edu	37	22	45719261	45719261	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	45719261	45719261	C	T	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	missense	c.253	p.R85W	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376				85	0	0	58	23	28.3951
CELSR1	0	genome.wustl.edu	37	22	46760452	46760452	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	46760452	46760452	G	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	silent	c.8736	p.G2912	0.001	NULL	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275				78	0	0	32	19	37.2549
BRD1	0	genome.wustl.edu	37	22	50216754	50216754	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	50216754	50216754	G	A	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	silent	c.1212	p.V404	0.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425				229	0	0	122	80	39.604
CRELD2	0	genome.wustl.edu	37	22	50315992	50315992	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	50315992	50315992	G	T	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	nonsense	c.640	p.G214*	0.000	superfamily_Growth_fac_rcpt_N_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164				17	0	0	15	5	25
TOMM70A	0	genome.wustl.edu	37	3	100096645	100096645	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	100096645	100096645	C	T	SNP	TOMM70A	ENST00000284320	human	ensembl	74_37	-1	known	silent	c.996	p.L332	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TOMM70A	HGNC	ENSG00000154174				88	0	0	49	30	37.9747
IRAK2	0	genome.wustl.edu	37	3	10268070	10268070	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	10268070	10268070	C	A	SNP	IRAK2	ENST00000256458	human	ensembl	74_37	+1	known	missense	c.1225	p.L409I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,superfamily_Kinase-like_dom,superfamily_DEATH-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IRAK2	HGNC	ENSG00000134070				29	0	0	9	15	62.5
BOC	0	genome.wustl.edu	37	3	112969723	112969723	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	112969723	112969723	C	T	SNP	BOC	ENST00000484034	human	ensembl	74_37	+1	putative	missense	c.419	p.P140L	0.000	NULL	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				22	0	0	12	7	36.8421
BOC	0	genome.wustl.edu	37	3	112998720	112998720	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	112998720	112998720	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	silent	c.2073	p.S691	0.768	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857				116	0	0	77	40	34.188
DRD3	0	genome.wustl.edu	37	3	113878640	113878640	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	113878640	113878640	T	C	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	silent	c.345	p.T115	0.866	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577				91	0	0	56	36	39.1304
POLQ	0	genome.wustl.edu	37	3	121251977	121251977	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	121251977	121251977	C	T	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.820	p.V274M	0.996	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				69	0	0	48	25	34.2466
CASR	0	genome.wustl.edu	37	3	121980530	121980530	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	121980530	121980530	C	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	silent	c.648	p.D216	0.993	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828				154	0	0	95	60	38.7097
ALDH1L1	0	genome.wustl.edu	37	3	125850310	125850310	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	125850310	125850310	C	T	SNP	ALDH1L1	ENST00000393434	human	ensembl	74_37	-1	known	missense	c.1540	p.V514I	0.971	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908				101	0	0	59	34	36.5591
CHST13	0	genome.wustl.edu	37	3	126261178	126261178	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	126261178	126261178	C	T	SNP	CHST13	ENST00000319340	human	ensembl	74_37	+1	known	silent	c.783	p.Y261	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	CHST13	HGNC	ENSG00000180767				10	0	0	5	6	54.5455
PLXNA1	0	genome.wustl.edu	37	3	126740964	126740964	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	126740964	126740964	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	missense	c.4075	p.G1359R	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				39	0	0	23	13	36.1111
PODXL2	0	genome.wustl.edu	37	3	127358266	127358266	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	127358266	127358266	C	T	SNP	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	silent	c.249	p.S83	0.614	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631				46	0	0	35	21	37.5
ABTB1	0	genome.wustl.edu	37	3	127399266	127399266	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	127399266	127399266	A	G	SNP	ABTB1	ENST00000232744	human	ensembl	74_37	+1	known	missense	c.1385	p.Q462R	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB1	HGNC	ENSG00000114626				12	0	0	7	8	53.3333
EEFSEC	0	genome.wustl.edu	37	3	127965713	127965713	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	127965713	127965713	C	T	SNP	EEFSEC	ENST00000254730	human	ensembl	74_37	+1	known	silent	c.351	p.I117	0.828	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EEFSEC	HGNC	ENSG00000132394				192	0	0	136	72	34.6154
GATA2	0	genome.wustl.edu	37	3	128204753	128204753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	128204753	128204753	G	A	SNP	GATA2	ENST00000341105	human	ensembl	74_37	-1	known	missense	c.688	p.R230C	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA2	HGNC	ENSG00000179348				56	0	0	29	18	38.2979
DNAJC13	0	genome.wustl.edu	37	3	132175582	132175582	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	132175582	132175582	G	A	SNP	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	missense	c.1255	p.V419I	1.000	NULL	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246				74	0	0	62	28	31.1111
HDAC11	0	genome.wustl.edu	37	3	13525045	13525045	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	13525045	13525045	G	A	SNP	HDAC11	ENST00000295757	human	ensembl	74_37	+1	known	missense	c.233	p.R78H	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517				133	1	0.746269	64	29	31.1828
PPP2R3A	0	genome.wustl.edu	37	3	135722322	135722322	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	135722322	135722322	C	T	SNP	PPP2R3A	ENST00000264977	human	ensembl	74_37	+1	known	missense	c.1982	p.P661L	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3A	HGNC	ENSG00000073711				65	0	0	62	25	28.7356
PRR23B	0	genome.wustl.edu	37	3	138738987	138738987	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	138738987	138738987	C	T	SNP	PRR23B	ENST00000329447	human	ensembl	74_37	-1	known	missense	c.517	p.G173S	0.000	pfam_UPF0572	pfam_UPF0572	-	no_errors	PRR23B	HGNC	ENSG00000184814				67	0	0	49	31	38.75
ZBTB38	0	genome.wustl.edu	37	3	141163979	141163979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	141163979	141163979	C	T	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.2752	p.R918C	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311				41	0	0	29	16	35.5556
CHST2	0	genome.wustl.edu	37	3	142840163	142840163	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	142840163	142840163	G	A	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	missense	c.505	p.V169M	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				36	0	0	21	11	34.375
FGD5	0	genome.wustl.edu	37	3	14861510	14861510	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	14861510	14861510	C	T	SNP	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	missense	c.932	p.T311I	0.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783				85	0	0	49	31	38.75
NR2C2	0	genome.wustl.edu	37	3	15062331	15062331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	15062331	15062331	A	G	SNP	NR2C2	ENST00000323373	human	ensembl	74_37	+1	known	missense	c.505	p.T169A	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463				112	0	0	58	33	36.2637
CLRN1	0	genome.wustl.edu	37	3	150645745	150645745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	150645745	150645745	A	G	SNP	CLRN1	ENST00000328863	human	ensembl	74_37	-1	known	missense	c.716	p.V239A	0.871	NULL	NULL	-	no_errors	CLRN1	HGNC	ENSG00000163646				70	0	0	43	29	40.2778
IGSF10	0	genome.wustl.edu	37	3	151154554	151154554	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	151154554	151154554	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.7795	p.D2599N	0.960	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				124	0	0	80	48	37.5
IGSF10	0	genome.wustl.edu	37	3	151164291	151164291	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	151164291	151164291	C	T	SNP	IGSF10	ENST00000282466	human	ensembl	74_37	-1	known	missense	c.3478	p.A1160T	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF10	HGNC	ENSG00000152580				291	0	0	201	116	36.5931
ZFYVE20	0	genome.wustl.edu	37	3	15119589	15119589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	15119589	15119589	C	T	SNP	ZFYVE20	ENST00000253699	human	ensembl	74_37	-1	known	missense	c.991	p.A331T	0.997	NULL	pfam_Rbsn,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	ZFYVE20	HGNC	ENSG00000131381				56	0	0	34	19	35.8491
ANKRD28	0	genome.wustl.edu	37	3	15737709	15737709	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	15737709	15737709	G	A	SNP	ANKRD28	ENST00000383777	human	ensembl	74_37	-1	known	missense	c.1600	p.R534C	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD28	HGNC	ENSG00000206560				16	0	0	1	5	83.3333
IQCJ-SCHIP1	0	genome.wustl.edu	37	3	159583997	159583997	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	159583997	159583997	G	T	SNP	IQCJ-SCHIP1	ENST00000485419	human	ensembl	74_37	+1	known	nonsense	c.1033	p.G345*	1.000	pfam_SCHIP_1	pfam_SCHIP_1	-	no_errors	IQCJ-SCHIP1	HGNC	ENSG00000250588				135	0	0	86	51	37.2263
SMC4	0	genome.wustl.edu	37	3	160141239	160141239	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	160141239	160141239	C	T	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	silent	c.2046	p.T682	0.318	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,smart_SMC_hinge	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				93	0	0	53	45	45.9184
SMC4	0	genome.wustl.edu	37	3	160150302	160150302	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	160150302	160150302	A	G	SNP	SMC4	ENST00000344722	human	ensembl	74_37	+1	known	missense	c.3529	p.S1177G	1.000	pfam_RecF/RecN/SMC_N,superfamily_P-loop_NTPase	pfam_RecF/RecN/SMC_N,pfam_SMC_hinge,superfamily_P-loop_NTPase,superfamily_SMC_hinge,superfamily_Chemotax_Me-accpt_rcpt_lig-bd,superfamily_Prefoldin,smart_SMC_hinge	-	no_errors	SMC4	HGNC	ENSG00000113810				25	0	0	11	7	38.8889
WDR49	0	genome.wustl.edu	37	3	167249049	167249049	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	167249049	167249049	A	G	SNP	WDR49	ENST00000308378	human	ensembl	74_37	-1	known	missense	c.1016	p.L339P	0.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR49	HGNC	ENSG00000174776				67	0	0	49	34	40.9639
TNFSF10	0	genome.wustl.edu	37	3	172241171	172241171	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	172241171	172241171	C	A	SNP	TNFSF10	ENST00000241261	human	ensembl	74_37	-1	known	missense	c.4	p.A2S	0.044	pirsf_TNF_ligand_10/11	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_10/11,pfscan_TNF_dom	-	no_errors	TNFSF10	HGNC	ENSG00000121858				63	0	0	59	29	32.9545
ACTL6A	0	genome.wustl.edu	37	3	179298752	179298752	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	179298752	179298752	C	T	SNP	ACTL6A	ENST00000429709	human	ensembl	74_37	+1	known	missense	c.901	p.R301W	0.997	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL6A	HGNC	ENSG00000136518				108	0	0	80	46	36.5079
LAMP3	0	genome.wustl.edu	37	3	182870248	182870248	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	182870248	182870248	G	A	SNP	LAMP3	ENST00000265598	human	ensembl	74_37	-1	known	missense	c.803	p.T268M	0.655	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081				290	0	0	172	108	38.5714
MCF2L2	0	genome.wustl.edu	37	3	183035921	183035921	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	183035921	183035921	G	A	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	missense	c.688	p.P230S	1.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524				51	0	0	27	14	34.1463
ABCC5	0	genome.wustl.edu	37	3	183665239	183665239	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	183665239	183665239	C	T	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	missense	c.3287	p.R1096Q	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770				37	0	0	16	14	46.6667
DVL3	0	genome.wustl.edu	37	3	183885455	183885455	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	183885455	183885455	G	A	SNP	DVL3	ENST00000313143	human	ensembl	74_37	+1	known	missense	c.1286	p.R429H	1.000	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam,prints_Dishevelled_3	-	no_errors	DVL3	HGNC	ENSG00000161202				60	0	0	43	20	31.746
SATB1	0	genome.wustl.edu	37	3	18393620	18393620	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	18393620	18393620	T	C	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	missense	c.1643	p.N548S	1.000	pfam_Hmoeo_CUT,superfamily_Lambda_DNA-bd_dom,pfscan_Hmoeo_CUT	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568				68	0	0	48	38	44.186
PSMD2	0	genome.wustl.edu	37	3	184018118	184018118	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	184018118	184018118	G	C	SNP	PSMD2	ENST00000310118	human	ensembl	74_37	+1	known	missense	c.243	p.Q81H	1.000	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn1	-	no_errors	PSMD2	HGNC	ENSG00000175166				89	0	0	45	30	40
RTP1	0	genome.wustl.edu	37	3	186915363	186915363	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	186915363	186915363	C	T	SNP	RTP1	ENST00000312295	human	ensembl	74_37	+1	known	silent	c.60	p.S20	0.000	NULL	NULL	-	no_errors	RTP1	HGNC	ENSG00000175077				113	0	0	65	38	36.8932
RTP2	0	genome.wustl.edu	37	3	187416477	187416477	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	187416477	187416477	C	T	SNP	RTP2	ENST00000358241	human	ensembl	74_37	-1	known	missense	c.487	p.V163I	0.998	NULL	NULL	-	no_errors	RTP2	HGNC	ENSG00000198471				51	0	0	38	21	35.5932
TPRG1	0	genome.wustl.edu	37	3	189038590	189038590	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	189038590	189038590	G	A	SNP	TPRG1	ENST00000345063	human	ensembl	74_37	+1	known	missense	c.809	p.R270H	1.000	NULL	pfam_Inositol_phosphatase	-	no_errors	TPRG1	HGNC	ENSG00000188001				32	0	0	23	10	30.303
CCDC50	0	genome.wustl.edu	37	3	191087798	191087798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	191087798	191087798	G	A	SNP	CCDC50	ENST00000392456	human	ensembl	74_37	+1	known	missense	c.421	p.A141T	0.964	NULL	NULL	-	no_errors	CCDC50	HGNC	ENSG00000152492				114	0	0	97	48	33.1034
MB21D2	0	genome.wustl.edu	37	3	192516769	192516769	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	192516769	192516769	G	A	SNP	MB21D2	ENST00000392452	human	ensembl	74_37	-1	known	silent	c.882	p.S294	0.998	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611				55	0	0	25	18	41.8605
OPA1	0	genome.wustl.edu	37	3	193336664	193336664	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	193336664	193336664	C	T	SNP	OPA1	ENST00000361510	human	ensembl	74_37	+1	known	missense	c.617	p.P206L	0.990	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,prints_Dynamin_SF	-	no_errors	OPA1	HGNC	ENSG00000198836				117	0	0	74	36	32.7273
SDHAP1	0	genome.wustl.edu	37	3	195701373	195701373	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	195701373	195701373	G	A	SNP	SDHAP1	ENST00000427841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485				101	0	0	122	15	10.9489
RNF168	0	genome.wustl.edu	37	3	196229935	196229935	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	196229935	196229935	T	C	SNP	RNF168	ENST00000318037	human	ensembl	74_37	-1	known	missense	c.110	p.K37R	0.285	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961				107	0	0	59	36	37.8947
NRROS	0	genome.wustl.edu	37	3	196386950	196386950	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	196386950	196386950	G	A	SNP	NRROS	ENST00000328557	human	ensembl	74_37	+1	known	missense	c.436	p.E146K	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	NRROS	HGNC	ENSG00000174004				37	0	0	25	13	34.2105
DLG1	0	genome.wustl.edu	37	3	196792302	196792302	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	196792302	196792302	G	A	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	nonsense	c.2317	p.R773*	1.000	pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_Guanylate_kin-like	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				55	0	0	35	18	33.9623
DLG1	0	genome.wustl.edu	37	3	196793609	196793609	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	196793609	196793609	G	A	SNP	DLG1	ENST00000346964	human	ensembl	74_37	-1	known	silent	c.2163	p.Y721	1.000	superfamily_SH3_domain,pirsf_M-assoc_guanylate_kinase	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG1	HGNC	ENSG00000075711				79	0	0	60	30	33.3333
TOP2B	0	genome.wustl.edu	37	3	25674015	25674015	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	25674015	25674015	A	C	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	silent	c.1188	p.S396	1.000	pfam_Topo_IIA_bsu_dom2,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097				11	0	0	5	5	50
EOMES	0	genome.wustl.edu	37	3	27759208	27759208	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	27759208	27759208	C	T	SNP	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	missense	c.1471	p.V491I	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508				82	0	0	62	31	33.3333
AZI2	0	genome.wustl.edu	37	3	28379465	28379465	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	28379465	28379465	T	C	SNP	AZI2	ENST00000479665	human	ensembl	74_37	-1	known	silent	c.402	p.E134	0.962	NULL	NULL	-	no_errors	AZI2	HGNC	ENSG00000163512				59	0	0	29	24	45.283
DYNC1LI1	0	genome.wustl.edu	37	3	32568309	32568309	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	32568309	32568309	C	T	SNP	DYNC1LI1	ENST00000273130	human	ensembl	74_37	-1	known	silent	c.1554	p.T518	0.996	NULL	pfam_Dynein_light_int_chain,superfamily_P-loop_NTPase	-	no_errors	DYNC1LI1	HGNC	ENSG00000144635				77	0	0	62	33	34.7368
ARPP21	0	genome.wustl.edu	37	3	35785437	35785437	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	35785437	35785437	C	T	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	missense	c.2015	p.P672L	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995				89	0	0	63	41	39.4231
DCLK3	0	genome.wustl.edu	37	3	36759553	36759553	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	36759553	36759553	G	T	SNP	DCLK3	ENST00000416516	human	ensembl	74_37	-1	known	silent	c.1701	p.I567	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	DCLK3	HGNC	ENSG00000163673				183	0	0	107	61	36.3095
PLCD1	0	genome.wustl.edu	37	3	38049344	38049344	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	38049344	38049344	G	A	SNP	PLCD1	ENST00000463876	human	ensembl	74_37	-1	known	missense	c.2254	p.R752C	1.000	superfamily_C2_dom,smart_C2_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091				48	0	0	22	9	29.0323
GORASP1	0	genome.wustl.edu	37	3	39142646	39142646	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	39142646	39142646	G	A	SNP	GORASP1	ENST00000479124	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	GORASP1	HGNC	ENSG00000114745				15	0	0	10	7	41.1765
ULK4	0	genome.wustl.edu	37	3	41938397	41938397	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	41938397	41938397	G	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	nonsense	c.1447	p.R483*	0.943	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038				94	0	0	79	38	32.4786
NKTR	0	genome.wustl.edu	37	3	42680001	42680001	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	42680001	42680001	G	A	SNP	NKTR	ENST00000232978	human	ensembl	74_37	+1	known	silent	c.2805	p.S935	0.000	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	NKTR	HGNC	ENSG00000114857				71	0	0	34	22	39.2857
KLHL40	0	genome.wustl.edu	37	3	42727708	42727708	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	42727708	42727708	C	T	SNP	KLHL40	ENST00000287777	human	ensembl	74_37	+1	known	missense	c.598	p.R200W	0.198	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL40	HGNC	ENSG00000157119				11	0	0	5	2	28.5714
ANO10	0	genome.wustl.edu	37	3	43647331	43647331	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	43647331	43647331	A	G	SNP	ANO10	ENST00000292246	human	ensembl	74_37	-1	known	missense	c.14	p.L5S	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO10	HGNC	ENSG00000160746				44	0	0	35	8	18.6047
XCR1	0	genome.wustl.edu	37	3	46063377	46063377	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	46063377	46063377	C	T	SNP	XCR1	ENST00000309285	human	ensembl	74_37	-1	known	silent	c.63	p.P21	0.210	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_XCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Brdyknn_rcpt	-	no_errors	XCR1	HGNC	ENSG00000173578				71	0	0	50	33	39.759
LRRC2	0	genome.wustl.edu	37	3	46563024	46563024	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	46563024	46563024	G	T	SNP	LRRC2	ENST00000296144	human	ensembl	74_37	-1	known	missense	c.1054	p.L352I	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC2	HGNC	ENSG00000163827				21	0	0	15	9	37.5
SETD2	0	genome.wustl.edu	37	3	47139450	47139450	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	47139450	47139450	C	A	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.5137	p.D1713Y	1.000	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				86	0	0	55	32	36.7816
SETD2	0	genome.wustl.edu	37	3	47163427	47163427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	47163427	47163427	C	T	SNP	SETD2	ENST00000409792	human	ensembl	74_37	-1	known	missense	c.2699	p.C900Y	0.664	NULL	pfam_SRI,pfam_SET_dom,pfam_WW_dom,superfamily_WW_dom,superfamily_Ferritin-like_SF,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_dom,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_dom	-	no_errors	SETD2	HGNC	ENSG00000181555				103	0	0	50	37	42.5287
SMARCC1	0	genome.wustl.edu	37	3	47629765	47629765	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	47629765	47629765	T	C	SNP	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	silent	c.3252	p.P1084	0.007	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473				52	0	0	30	21	41.1765
NME6	0	genome.wustl.edu	37	3	48336187	48336187	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	48336187	48336187	G	A	SNP	NME6	ENST00000450160	human	ensembl	74_37	-1	known	missense	c.461	p.A154V	0.491	NULL	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	-	no_errors	NME6	HGNC	ENSG00000172113				99	0	0	87	8	8.42105
ITPR1	0	genome.wustl.edu	37	3	4859884	4859884	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	4859884	4859884	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	silent	c.7941	p.T2647	0.005	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995				33	0	0	23	9	28.125
CELSR3	0	genome.wustl.edu	37	3	48682920	48682920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	48682920	48682920	C	T	SNP	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	missense	c.7768	p.A2590T	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				94	0	0	52	26	33.3333
USP19	0	genome.wustl.edu	37	3	49156569	49156569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49156569	49156569	C	T	SNP	USP19	ENST00000398888	human	ensembl	74_37	-1	known	missense	c.10	p.G4R	0.492	NULL	pfam_Peptidase_C19/C67,pfam_Znf_MYND,pfam_CS_dom,superfamily_HSP20-like_chaperone,pfscan_CS_dom,pfscan_Znf_MYND,pfscan_Peptidase_C19/C67	-	no_errors	USP19	HGNC	ENSG00000172046				93	0	0	62	28	31.1111
LAMB2	0	genome.wustl.edu	37	3	49162267	49162267	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49162267	49162267	A	G	SNP	LAMB2	ENST00000305544	human	ensembl	74_37	-1	known	silent	c.2976	p.I992	0.999	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB2	HGNC	ENSG00000172037				84	0	0	55	7	11.2903
BSN	0	genome.wustl.edu	37	3	49698693	49698693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49698693	49698693	C	T	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.9415	p.R3139C	0.863	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				55	0	0	43	24	35.8209
GMPPB	0	genome.wustl.edu	37	3	49760113	49760113	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49760113	49760113	G	A	SNP	GMPPB	ENST00000308375	human	ensembl	74_37	-1	known	silent	c.477	p.F159	0.882	pfam_NTP_transferase	pfam_NTP_transferase,pfam_Hexapep_transf	-	no_errors	GMPPB	HGNC	ENSG00000173540				35	0	0	26	16	38.0952
TRAIP	0	genome.wustl.edu	37	3	49866635	49866635	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49866635	49866635	T	C	SNP	TRAIP	ENST00000331456	human	ensembl	74_37	-1	known	silent	c.1311	p.P437	0.986	NULL	pfam_Znf_C3HC4_RING-type,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TRAIP	HGNC	ENSG00000183763				127	0	0	70	35	33.3333
CAMKV	0	genome.wustl.edu	37	3	49898957	49898957	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	49898957	49898957	T	C	SNP	CAMKV	ENST00000477224	human	ensembl	74_37	-1	known	missense	c.356	p.E119G	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKV	HGNC	ENSG00000164076				82	0	0	67	5	6.94444
ZMYND10	0	genome.wustl.edu	37	3	50381254	50381254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	50381254	50381254	C	T	SNP	ZMYND10	ENST00000231749	human	ensembl	74_37	-1	known	missense	c.229	p.A77T	0.002	pirsf_UCP037948_Znf-MYND	pfam_Znf_MYND,pirsf_UCP037948_Znf-MYND,pfscan_Znf_MYND	-	no_errors	ZMYND10	HGNC	ENSG00000004838				99	0	0	52	27	34.1772
RBM15B	0	genome.wustl.edu	37	3	51429992	51429992	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	51429992	51429992	G	T	SNP	RBM15B	ENST00000323686	human	ensembl	74_37	+1	known	missense	c.1162	p.D388Y	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15B	HGNC	ENSG00000179837				62	0	0	28	19	40.4255
RAD54L2	0	genome.wustl.edu	37	3	51677945	51677945	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	51677945	51677945	A	G	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.2405	p.N802S	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080				11	0	0	12	5	29.4118
RAD54L2	0	genome.wustl.edu	37	3	51680401	51680401	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	51680401	51680401	G	A	SNP	RAD54L2	ENST00000409535	human	ensembl	74_37	+1	known	missense	c.2930	p.R977H	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L2	HGNC	ENSG00000164080				25	0	0	7	12	63.1579
DNAH1	0	genome.wustl.edu	37	3	52393996	52393996	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	52393996	52393996	C	T	SNP	DNAH1	ENST00000420323	human	ensembl	74_37	+1	known	missense	c.4472	p.A1491V	0.999	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase	-	no_errors	DNAH1	HGNC	ENSG00000114841				181	0	0	90	48	34.7826
STAB1	0	genome.wustl.edu	37	3	52555418	52555418	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	52555418	52555418	G	A	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.5950	p.V1984M	0.000	smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				96	0	0	64	38	37.2549
SPCS1	0	genome.wustl.edu	37	3	52740858	52740858	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	52740858	52740858	T	G	SNP	SPCS1	ENST00000233025	human	ensembl	74_37	+1	known	missense	c.347	p.V116G	1.000	pfam_SPC12	pfam_SPC12	-	no_errors	SPCS1	HGNC	ENSG00000114902				230	0	0	124	92	42.5926
CACNA1D	0	genome.wustl.edu	37	3	53700370	53700370	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	53700370	53700370	C	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	silent	c.924	p.I308	0.386	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				174	0	0	84	67	44.3709
LRTM1	0	genome.wustl.edu	37	3	54952736	54952736	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	54952736	54952736	G	A	SNP	LRTM1	ENST00000273286	human	ensembl	74_37	-1	known	missense	c.788	p.A263V	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRTM1	HGNC	ENSG00000144771				42	0	0	31	14	31.1111
ASB14	0	genome.wustl.edu	37	3	57312678	57312678	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	57312678	57312678	C	T	SNP	ASB14	ENST00000389601	human	ensembl	74_37	-1	known	silent	c.1158	p.P386	0.620	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB14	HGNC	ENSG00000239388				55	0	0	57	7	10.9375
PRICKLE2	0	genome.wustl.edu	37	3	64133162	64133162	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	64133162	64133162	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	74_37	-1	known	missense	c.1004	p.R335Q	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637				155	0	0	115	65	36.1111
ADAMTS9	0	genome.wustl.edu	37	3	64672445	64672445	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	64672445	64672445	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	74_37	-1	known	silent	c.315	p.F105	1.000	pfam_Peptidase_M12B_N	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS9	HGNC	ENSG00000163638				46	0	0	25	15	37.5
KBTBD8	0	genome.wustl.edu	37	3	67049611	67049611	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	67049611	67049611	T	C	SNP	KBTBD8	ENST00000417314	human	ensembl	74_37	+1	known	missense	c.223	p.F75L	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_BACK,pfam_BTB_POZ,pfam_Kelch_1,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD8	HGNC	ENSG00000163376				127	0	0	89	49	35.5072
FAM19A4	0	genome.wustl.edu	37	3	68782295	68782295	+	Nonstop_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	68782295	68782295	A	G	SNP	FAM19A4	ENST00000295569	human	ensembl	74_37	-1	known	nonstop	c.421	p.*141Q	1.000	NULL	pfam_Chemokine-like_FAM19A2	-	no_errors	FAM19A4	HGNC	ENSG00000163377				105	0	0	55	41	42.7083
TMF1	0	genome.wustl.edu	37	3	69097100	69097100	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	69097100	69097100	A	G	SNP	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	silent	c.756	p.G252	0.962	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747				72	0	0	31	31	50
PDZRN3	0	genome.wustl.edu	37	3	73433476	73433476	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	73433476	73433476	C	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2241	p.P747	0.038	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440				47	0	0	50	4	7.40741
CNTN3	0	genome.wustl.edu	37	3	74334537	74334537	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	74334537	74334537	A	G	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.2623	p.Y875H	0.999	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805				173	0	0	106	74	41.1111
FAM86DP	0	genome.wustl.edu	37	3	75471439	75471439	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	75471439	75471439	G	A	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026				9	0	0	3	4	57.1429
GRM7	0	genome.wustl.edu	37	3	7721813	7721813	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	7721813	7721813	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	silent	c.2529	p.P843	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277				69	0	0	46	26	36.1111
ROBO1	0	genome.wustl.edu	37	3	78737895	78737895	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	78737895	78737895	C	T	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.1073	p.R358H	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				17	0	0	12	9	42.8571
ROBO1	0	genome.wustl.edu	37	3	78796030	78796030	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	78796030	78796030	G	A	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	nonsense	c.520	p.Q174*	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				33	0	0	24	12	33.3333
PROS1	0	genome.wustl.edu	37	3	93593131	93593131	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	93593131	93593131	A	G	SNP	PROS1	ENST00000394236	human	ensembl	74_37	-1	known	silent	c.1989	p.A663	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500				62	0	0	31	22	41.5094
SETD5	0	genome.wustl.edu	37	3	9514939	9514939	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	9514939	9514939	G	A	SNP	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	missense	c.3215	p.R1072Q	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				45	0	0	24	18	42.8571
OR5H1	0	genome.wustl.edu	37	3	97851635	97851635	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	97851635	97851635	T	C	SNP	OR5H1	ENST00000354565	human	ensembl	74_37	+1	known	silent	c.94	p.L32	0.785	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192				95	0	0	55	45	45
CLDND1	0	genome.wustl.edu	37	3	98235544	98235544	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	98235544	98235544	G	A	SNP	CLDND1	ENST00000437922	human	ensembl	74_37	-1	known	missense	c.790	p.R264W	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin	-	no_errors	CLDND1	HGNC	ENSG00000080822				72	0	0	44	26	37.1429
GPR15	0	genome.wustl.edu	37	3	98251047	98251047	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	98251047	98251047	C	T	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	missense	c.170	p.A57V	0.006	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165				57	0	0	33	24	42.1053
CPOX	0	genome.wustl.edu	37	3	98300252	98300252	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	98300252	98300252	G	A	SNP	CPOX	ENST00000264193	human	ensembl	74_37	-1	known	nonsense	c.1276	p.R426*	0.987	pfam_Coprogen_oxidase_aer,superfamily_Coprogen_oxidase_aer,prints_Coprogen_oxidase_aer	pfam_Coprogen_oxidase_aer,superfamily_Coprogen_oxidase_aer,prints_Coprogen_oxidase_aer	-	no_errors	CPOX	HGNC	ENSG00000080819				56	0	0	39	19	32.7586
TADA3	0	genome.wustl.edu	37	3	9832966	9832966	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	9832966	9832966	C	T	SNP	TADA3	ENST00000301964	human	ensembl	74_37	-1	known	missense	c.185	p.R62H	1.000	NULL	pfam_Histone_AcTrfase_su3	-	no_errors	TADA3	HGNC	ENSG00000171148				74	0	0	36	19	34.5455
TTLL3	0	genome.wustl.edu	37	3	9867614	9867614	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	9867614	9867614	G	A	SNP	TTLL3	ENST00000426895	human	ensembl	74_37	+1	known	missense	c.1285	p.A429T	1.000	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL3	HGNC	ENSG00000214021				53	0	0	43	7	14
WDR1	0	genome.wustl.edu	37	4	10080545	10080545	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	10080545	10080545	G	A	SNP	WDR1	ENST00000382452	human	ensembl	74_37	-1	known	silent	c.1365	p.P455	0.006	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR1	HGNC	ENSG00000071127				62	0	0	27	19	41.3043
SLC39A8	0	genome.wustl.edu	37	4	103228644	103228644	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	103228644	103228644	C	T	SNP	SLC39A8	ENST00000356736	human	ensembl	74_37	-1	known	silent	c.501	p.G167	0.479	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A8	HGNC	ENSG00000138821				169	0	0	103	54	34.3949
TACR3	0	genome.wustl.edu	37	4	104512673	104512673	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	104512673	104512673	A	T	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	missense	c.1056	p.N352K	0.995	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				99	0	0	70	40	36.3636
ALPK1	0	genome.wustl.edu	37	4	113352968	113352968	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	113352968	113352968	C	T	SNP	ALPK1	ENST00000177648	human	ensembl	74_37	+1	known	silent	c.2265	p.C755	0.000	NULL	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331				80	0	0	45	24	34.7826
HS3ST1	0	genome.wustl.edu	37	4	11400913	11400913	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	11400913	11400913	C	T	SNP	HS3ST1	ENST00000002596	human	ensembl	74_37	-1	known	silent	c.717	p.P239	0.989	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST1	HGNC	ENSG00000002587				44	0	0	26	24	48
NDST3	0	genome.wustl.edu	37	4	118975891	118975891	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	118975891	118975891	T	G	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.826	p.L276V	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100				161	0	0	118	57	32.5714
TRPC3	0	genome.wustl.edu	37	4	122853799	122853799	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	122853799	122853799	C	T	SNP	TRPC3	ENST00000379645	human	ensembl	74_37	-1	known	missense	c.614	p.R205H	1.000	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPC3_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC3	HGNC	ENSG00000138741				44	0	0	24	19	44.186
ADAD1	0	genome.wustl.edu	37	4	123329146	123329146	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	123329146	123329146	G	A	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.808	p.D270N	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				58	0	0	38	33	46.4789
PCDH18	0	genome.wustl.edu	37	4	138451389	138451389	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	138451389	138451389	G	A	SNP	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	silent	c.1854	p.C618	0.978	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				285	0	0	180	118	39.5973
TBC1D9	0	genome.wustl.edu	37	4	141578953	141578953	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	141578953	141578953	G	T	SNP	TBC1D9	ENST00000442267	human	ensembl	74_37	-1	known	missense	c.1935	p.D645E	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9	HGNC	ENSG00000109436				167	0	0	101	65	39.1566
CPEB2	0	genome.wustl.edu	37	4	15009113	15009113	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	15009113	15009113	A	G	SNP	CPEB2	ENST00000538197	human	ensembl	74_37	+1	known	missense	c.1847	p.K616R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB2	HGNC	ENSG00000137449				76	0	0	56	31	35.6322
FBXW7	0	genome.wustl.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	153247289	153247289	G	A	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	missense	c.1513	p.R505C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670				121	0	0	67	52	43.6975
CC2D2A	0	genome.wustl.edu	37	4	15539598	15539598	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	15539598	15539598	A	G	SNP	CC2D2A	ENST00000413206	human	ensembl	74_37	+1	known	missense	c.1841	p.E614G	1.000	NULL	superfamily_C2_dom,smart_C2_dom	-	no_errors	CC2D2A	HGNC	ENSG00000048342				19	0	0	20	3	13.0435
TDO2	0	genome.wustl.edu	37	4	156825180	156825180	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	156825180	156825180	A	T	SNP	TDO2	ENST00000536354	human	ensembl	74_37	+1	known	nonsense	c.46	p.K16*	0.019	NULL	pfam_Trp_2_3_dOase	-	no_errors	TDO2	HGNC	ENSG00000151790				42	0	0	46	27	36.9863
FSTL5	0	genome.wustl.edu	37	4	162697165	162697165	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	162697165	162697165	A	C	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	missense	c.471	p.N157K	0.990	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				36	0	0	34	15	30.6122
TLL1	0	genome.wustl.edu	37	4	166910564	166910564	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	166910564	166910564	T	C	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	silent	c.201	p.D67	1.000	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295				92	0	0	58	37	38.9474
ANXA10	0	genome.wustl.edu	37	4	169083678	169083678	+	Splice_Site	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	169083678	169083678	G	A	SNP	ANXA10	ENST00000359299	human	ensembl	74_37	+1	known	splice_site	c.196-1	e4-1	1.000	-	-	-	no_errors	ANXA10	HGNC	ENSG00000109511				38	0	0	29	18	38.2979
NEK1	0	genome.wustl.edu	37	4	170322819	170322819	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	170322819	170322819	G	A	SNP	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	silent	c.3567	p.N1189	0.995	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				229	0	0	130	103	44.206
GALNTL6	0	genome.wustl.edu	37	4	173873245	173873245	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	173873245	173873245	C	T	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.1207	p.R403W	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				85	0	0	52	33	38.8235
GALNTL6	0	genome.wustl.edu	37	4	173930422	173930422	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	173930422	173930422	G	A	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.1465	p.E489K	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473				74	0	0	46	21	31.3433
ADAM29	0	genome.wustl.edu	37	4	175898755	175898755	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	175898755	175898755	T	C	SNP	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	silent	c.2079	p.C693	0.000	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				28	0	0	17	14	45.1613
ENPP6	0	genome.wustl.edu	37	4	185038136	185038136	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	185038136	185038136	A	G	SNP	ENPP6	ENST00000296741	human	ensembl	74_37	-1	known	missense	c.728	p.M243T	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP6	HGNC	ENSG00000164303				72	0	0	38	21	35.5932
TLR3	0	genome.wustl.edu	37	4	187004768	187004768	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	187004768	187004768	G	A	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	missense	c.1928	p.R643H	0.313	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342				109	0	0	83	62	42.7586
FAT1	0	genome.wustl.edu	37	4	187541438	187541438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	187541438	187541438	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.6302	p.R2101H	0.975	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				171	0	0	136	63	31.6583
CCKAR	0	genome.wustl.edu	37	4	26483560	26483560	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	26483560	26483560	G	T	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	silent	c.987	p.I329	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				106	0	0	58	35	37.6344
TLR1	0	genome.wustl.edu	37	4	38800236	38800236	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	38800236	38800236	T	C	SNP	TLR1	ENST00000308979	human	ensembl	74_37	-1	known	missense	c.217	p.I73V	0.905	pirsf_Toll-like_receptor,smart_Leu-rich_rpt_typical-subtyp	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR1	HGNC	ENSG00000174125				155	0	0	103	56	35.2201
FAM86EP	0	genome.wustl.edu	37	4	3949803	3949803	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	3949803	3949803	C	T	SNP	FAM86EP	ENST00000313946	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	FAM86EP	HGNC	ENSG00000251669				56	0	0	32	20	38.4615
RBM47	0	genome.wustl.edu	37	4	40440469	40440469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	40440469	40440469	C	T	SNP	RBM47	ENST00000295971	human	ensembl	74_37	-1	known	missense	c.442	p.V148M	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	RBM47	HGNC	ENSG00000163694				74	0	0	34	27	44.2623
OTOP1	0	genome.wustl.edu	37	4	4199699	4199699	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	4199699	4199699	G	A	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	silent	c.862	p.L288	1.000	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982				77	0	0	46	27	36.9863
ABCA11P	0	genome.wustl.edu	37	4	420302	420302	+	RNA	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	420302	420302	A	C	SNP	ABCA11P	ENST00000451020	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595				61	0	0	27	14	34.1463
BEND4	0	genome.wustl.edu	37	4	42145857	42145857	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	42145857	42145857	G	C	SNP	BEND4	ENST00000502486	human	ensembl	74_37	-1	known	missense	c.642	p.H214Q	0.070	NULL	pfam_BEN_domain	-	no_errors	BEND4	HGNC	ENSG00000188848				37	0	0	19	15	44.1176
OTOP1	0	genome.wustl.edu	37	4	4228387	4228387	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	4228387	4228387	C	T	SNP	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	missense	c.205	p.V69M	1.000	NULL	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982				20	0	0	13	5	27.7778
SPATA18	0	genome.wustl.edu	37	4	52943043	52943043	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	52943043	52943043	C	A	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.857	p.P286Q	0.879	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				60	0	0	35	23	39.6552
PDGFRA	0	genome.wustl.edu	37	4	55129867	55129867	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	55129867	55129867	C	T	SNP	PDGFRA	ENST00000257290	human	ensembl	74_37	+1	known	missense	c.401	p.T134M	0.041	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	PDGFRA	HGNC	ENSG00000134853				107	0	0	89	31	25.8333
EVC2	0	genome.wustl.edu	37	4	5620262	5620262	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	5620262	5620262	C	T	SNP	EVC2	ENST00000344408	human	ensembl	74_37	-1	known	silent	c.2649	p.A883	0.061	NULL	pfam_Limbin	-	no_errors	EVC2	HGNC	ENSG00000173040				75	0	0	30	22	42.3077
CEP135	0	genome.wustl.edu	37	4	56841070	56841070	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	56841070	56841070	C	T	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	nonsense	c.1408	p.R470*	0.976	superfamily_EB1_C	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799				90	0	0	59	24	28.9157
KIAA1211	0	genome.wustl.edu	37	4	57181497	57181497	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	57181497	57181497	T	C	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	missense	c.1829	p.L610P	1.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				42	0	0	11	13	54.1667
EVC	0	genome.wustl.edu	37	4	5803693	5803693	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	5803693	5803693	C	T	SNP	EVC	ENST00000264956	human	ensembl	74_37	+1	known	missense	c.2321	p.A774V	0.011	NULL	NULL	-	no_errors	EVC	HGNC	ENSG00000072840				28	0	0	13	12	48
C4orf50	0	genome.wustl.edu	37	4	5990091	5990091	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	5990091	5990091	G	T	SNP	C4orf50	ENST00000531445	human	ensembl	74_37	-1	known	missense	c.1408	p.L470M	0.000	NULL	NULL	-	no_errors	C4orf50	HGNC	ENSG00000181215				46	0	0	25	11	30.5556
JAKMIP1	0	genome.wustl.edu	37	4	6107463	6107463	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	6107463	6107463	G	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	missense	c.361	p.R121C	1.000	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				22	0	0	14	10	41.6667
JAKMIP1	0	genome.wustl.edu	37	4	6107671	6107671	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	6107671	6107671	C	T	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	silent	c.153	p.L51	0.997	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				41	0	0	22	14	38.8889
PDE6B	0	genome.wustl.edu	37	4	661762	661762	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	661762	661762	A	G	SNP	PDE6B	ENST00000496514	human	ensembl	74_37	+1	known	missense	c.2470	p.K824E	0.998	NULL	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE6B	HGNC	ENSG00000133256				139	0	0	70	45	39.1304
TMPRSS11F	0	genome.wustl.edu	37	4	68930611	68930611	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	68930611	68930611	T	C	SNP	TMPRSS11F	ENST00000356291	human	ensembl	74_37	-1	known	silent	c.807	p.P269	0.998	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_HAT/DESC1,pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_SEA_dom,pfscan_Peptidase_S1	-	no_errors	TMPRSS11F	HGNC	ENSG00000198092				37	0	0	28	15	34.8837
YTHDC1	0	genome.wustl.edu	37	4	69182036	69182036	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	69182036	69182036	C	T	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	missense	c.1955	p.R652Q	1.000	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				191	0	0	113	82	42.0513
UTP3	0	genome.wustl.edu	37	4	71555158	71555158	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	71555158	71555158	T	A	SNP	UTP3	ENST00000254803	human	ensembl	74_37	+1	known	missense	c.764	p.I255N	0.173	pfam_Sas10/Utp3/C1D	pfam_Sas10_C_dom,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467				87	0	0	65	29	30.8511
RUFY3	0	genome.wustl.edu	37	4	71660563	71660563	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	71660563	71660563	C	T	SNP	RUFY3	ENST00000381006	human	ensembl	74_37	+1	novel	silent	c.1509	p.N503	0.012	NULL	pfam_Run,superfamily_Znf_FYVE_PHD,superfamily_Prefoldin,smart_Run,smart_Znf_FYVE,pfscan_Run	-	no_errors	RUFY3	HGNC	ENSG00000018189				115	0	0	64	36	36
SORCS2	0	genome.wustl.edu	37	4	7725544	7725544	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	7725544	7725544	C	T	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	missense	c.2545	p.R849C	0.999	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985				80	0	0	48	30	38.4615
CCDC158	0	genome.wustl.edu	37	4	77300523	77300523	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	77300523	77300523	G	A	SNP	CCDC158	ENST00000388914	human	ensembl	74_37	-1	known	missense	c.949	p.R317C	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC158	HGNC	ENSG00000163749				65	0	0	43	24	35.8209
SHROOM3	0	genome.wustl.edu	37	4	77660524	77660524	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	77660524	77660524	C	T	SNP	SHROOM3	ENST00000296043	human	ensembl	74_37	+1	known	missense	c.1198	p.R400W	0.612	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM3	HGNC	ENSG00000138771				45	0	0	43	26	37.6812
FRAS1	0	genome.wustl.edu	37	4	79300892	79300892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	79300892	79300892	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.3305	p.T1102I	0.009	NULL	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				64	0	0	29	23	44.2308
BMP2K	0	genome.wustl.edu	37	4	79786730	79786730	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	79786730	79786730	C	T	SNP	BMP2K	ENST00000335016	human	ensembl	74_37	+1	known	missense	c.1087	p.P363S	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756				63	0	0	34	22	39.2857
SH3TC1	0	genome.wustl.edu	37	4	8228895	8228895	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	8228895	8228895	G	A	SNP	SH3TC1	ENST00000245105	human	ensembl	74_37	+1	known	missense	c.1474	p.D492N	0.000	NULL	superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC1	HGNC	ENSG00000125089				25	0	0	9	7	43.75
ACOX3	0	genome.wustl.edu	37	4	8398744	8398744	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	8398744	8398744	C	T	SNP	ACOX3	ENST00000356406	human	ensembl	74_37	-1	known	missense	c.976	p.A326T	0.821	pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_AcylCo_DH/oxidase_C,superfamily_AcylCo_DH/oxidase_C,superfamily_AcylCoA_DH/oxidase_NM_dom,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOX3	HGNC	ENSG00000087008				110	0	0	55	20	26.6667
PLAC8	0	genome.wustl.edu	37	4	84026090	84026090	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	84026090	84026090	C	T	SNP	PLAC8	ENST00000311507	human	ensembl	74_37	-1	known	missense	c.202	p.V68I	0.959	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	pfam_Uncharacterised_Cys-rich,tigrfam_Uncharacterised_Cys-rich	-	no_errors	PLAC8	HGNC	ENSG00000145287				68	0	0	51	26	33.7662
GPR78	0	genome.wustl.edu	37	4	8588903	8588903	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	8588903	8588903	G	A	SNP	GPR78	ENST00000382487	human	ensembl	74_37	+1	known	missense	c.905	p.R302H	0.533	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR78	HGNC	ENSG00000155269				59	0	0	31	27	46.5517
CPZ	0	genome.wustl.edu	37	4	8608573	8608573	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	8608573	8608573	G	A	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.1016	p.R339H	0.056	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625				30	0	0	17	19	52.7778
SPP1	0	genome.wustl.edu	37	4	88898240	88898240	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	88898240	88898240	G	T	SNP	SPP1	ENST00000395080	human	ensembl	74_37	+1	known	missense	c.84	p.E28D	1.000	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	pfam_Osteopontin,smart_Osteopontin,prints_Osteopontin	-	no_errors	SPP1	HGNC	ENSG00000118785				51	0	0	28	17	37.7778
PPM1K	0	genome.wustl.edu	37	4	89192304	89192304	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	89192304	89192304	G	A	SNP	PPM1K	ENST00000315194	human	ensembl	74_37	-1	known	silent	c.579	p.P193	1.000	NULL	pfam_PP2C-like_dom,superfamily_PP2C-like_dom	-	no_errors	PPM1K	HGNC	ENSG00000163644				19	0	0	12	11	47.8261
ATOH1	0	genome.wustl.edu	37	4	94750179	94750179	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	94750179	94750179	G	A	SNP	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	silent	c.102	p.P34	0.941	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				54	0	0	27	19	41.3043
ATOH1	0	genome.wustl.edu	37	4	94750450	94750450	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	94750450	94750450	C	T	SNP	ATOH1	ENST00000306011	human	ensembl	74_37	+1	known	missense	c.373	p.R125W	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH1	HGNC	ENSG00000172238				44	0	0	29	16	35.5556
NUDT12	0	genome.wustl.edu	37	5	102895167	102895167	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	102895167	102895167	C	T	SNP	NUDT12	ENST00000230792	human	ensembl	74_37	-1	known	missense	c.209	p.C70Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_NUDIX_hydrolase_dom,pfam_Ankyrin_rpt,pfam_Znr_NADH_PPase,pfam_NADH_PPase-like_N,superfamily_NUDIX_hydrolase_dom-like,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NUDT12	HGNC	ENSG00000112874				77	0	0	36	18	33.3333
FBXL17	0	genome.wustl.edu	37	5	107559886	107559886	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	107559886	107559886	T	G	SNP	FBXL17	ENST00000542267	human	ensembl	74_37	-1	known	missense	c.1550	p.E517A	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL17	HGNC	ENSG00000145743				76	0	0	45	28	38.3562
KCNN2	0	genome.wustl.edu	37	5	113698877	113698877	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	113698877	113698877	C	T	SNP	KCNN2	ENST00000264773	human	ensembl	74_37	+1	known	silent	c.405	p.S135	1.000	pfam_K_chnl_Ca-activ_SK,prints_K_chnl_Ca-activ_SK	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN2	HGNC	ENSG00000080709				47	0	0	28	21	42.8571
AQPEP	0	genome.wustl.edu	37	5	115298452	115298452	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	115298452	115298452	G	A	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	silent	c.138	p.S46	0.004	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				52	0	0	40	16	28.5714
SEMA6A	0	genome.wustl.edu	37	5	115783385	115783385	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	115783385	115783385	C	T	SNP	SEMA6A	ENST00000257414	human	ensembl	74_37	-1	known	missense	c.2068	p.V690I	1.000	NULL	pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom	-	no_errors	SEMA6A	HGNC	ENSG00000092421				44	0	0	19	22	53.6585
ENSG00000249996	0	genome.wustl.edu	37	5	122372186	122372186	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	122372186	122372186	C	T	SNP	ENSG00000249996	ENST00000506859	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-359P5.1	Clone_based_vega_gene	ENSG00000249996				18	0	0	8	4	33.3333
PHAX	0	genome.wustl.edu	37	5	125939525	125939525	+	Silent	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	125939525	125939525	T	G	SNP	PHAX	ENST00000297540	human	ensembl	74_37	+1	known	silent	c.360	p.A120	0.449	NULL	pfam_PHAX_RNA-binding_domain	-	no_errors	PHAX	HGNC	ENSG00000164902				64	0	0	30	29	49.1525
LMNB1	0	genome.wustl.edu	37	5	126147446	126147446	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	126147446	126147446	G	A	SNP	LMNB1	ENST00000494185	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LMNB1	HGNC	ENSG00000113368				59	0	0	32	18	36
SHROOM1	0	genome.wustl.edu	37	5	132159958	132159958	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	132159958	132159958	C	T	SNP	SHROOM1	ENST00000378679	human	ensembl	74_37	-1	known	silent	c.1395	p.R465	0.001	NULL	pfam_ASD2,pfam_ASD1	-	no_errors	SHROOM1	HGNC	ENSG00000164403				39	0	0	22	20	47.619
CLPTM1L	0	genome.wustl.edu	37	5	1335244	1335244	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	1335244	1335244	C	T	SNP	CLPTM1L	ENST00000320895	human	ensembl	74_37	-1	known	missense	c.724	p.D242N	1.000	pfam_CLPTM1	pfam_CLPTM1	-	no_errors	CLPTM1L	HGNC	ENSG00000049656				126	0	0	64	48	42.8571
PHF15	0	genome.wustl.edu	37	5	133914490	133914490	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	133914490	133914490	C	T	SNP	PHF15	ENST00000395003	human	ensembl	74_37	+1	known	missense	c.1856	p.T619M	0.993	NULL	pfam_Enhancer_polycomb-like_N,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PHF15	HGNC	ENSG00000043143				66	0	0	39	15	27.7778
TGFBI	0	genome.wustl.edu	37	5	135391436	135391436	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	135391436	135391436	C	T	SNP	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	missense	c.1478	p.T493M	0.998	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708				26	0	0	31	7	18.4211
PKD2L2	0	genome.wustl.edu	37	5	137244597	137244597	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	137244597	137244597	A	G	SNP	PKD2L2	ENST00000508883	human	ensembl	74_37	+1	known	silent	c.1290	p.G430	0.999	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795				40	0	0	36	3	7.69231
CTNNA1	0	genome.wustl.edu	37	5	138145810	138145810	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	138145810	138145810	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	nonsense	c.385	p.R129*	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				103	0	0	51	36	41.3793
PCDHA1	0	genome.wustl.edu	37	5	140166926	140166926	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140166926	140166926	G	A	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.1051	p.A351T	0.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970				66	0	0	53	37	41.1111
PCDHA10	0	genome.wustl.edu	37	5	140237715	140237715	+	Silent	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140237715	140237715	C	G	SNP	PCDHA10	ENST00000307360	human	ensembl	74_37	+1	known	silent	c.2082	p.V694	0.005	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA10	HGNC	ENSG00000250120				81	0	0	35	24	40.678
PCDHA11	0	genome.wustl.edu	37	5	140250745	140250745	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140250745	140250745	C	T	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	missense	c.2057	p.A686V	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				72	0	0	44	35	44.3038
PCDHA12	0	genome.wustl.edu	37	5	140256290	140256290	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140256290	140256290	C	T	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	silent	c.1233	p.S411	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				284	0	0	168	82	32.8
PCDHB1	0	genome.wustl.edu	37	5	140431806	140431806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140431806	140431806	G	A	SNP	PCDHB1	ENST00000306549	human	ensembl	74_37	+1	known	missense	c.751	p.V251I	0.078	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB1	HGNC	ENSG00000171815				39	0	0	21	8	27.5862
PCDHB2	0	genome.wustl.edu	37	5	140474383	140474383	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140474383	140474383	C	T	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	silent	c.9	p.A3	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				70	0	0	30	18	37.5
PCDHB2	0	genome.wustl.edu	37	5	140474556	140474556	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140474556	140474556	T	G	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.182	p.L61R	0.778	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852				64	0	0	23	27	54
PCDHB5	0	genome.wustl.edu	37	5	140517067	140517067	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140517067	140517067	C	T	SNP	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	missense	c.2051	p.S684L	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209				188	0	0	125	76	37.8109
PCDHB6	0	genome.wustl.edu	37	5	140530541	140530541	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140530541	140530541	A	G	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.703	p.N235D	0.999	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211				60	0	0	37	24	39.3443
ENSG00000255622	0	genome.wustl.edu	37	5	140537160	140537160	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140537160	140537160	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1584	p.F528	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				145	0	0	78	46	37.0968
ENSG00000255622	0	genome.wustl.edu	37	5	140537175	140537175	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140537175	140537175	C	T	SNP	ENSG00000255622	ENST00000539533	human	ensembl	74_37	+1	known	silent	c.1599	p.G533	0.494	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB17	Uniprot_gn	ENSG00000255622				135	0	0	68	40	37.037
PCDHB7	0	genome.wustl.edu	37	5	140553461	140553461	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140553461	140553461	C	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1045	p.L349M	0.005	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				38	0	0	27	24	47.0588
PCDHB7	0	genome.wustl.edu	37	5	140554770	140554770	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140554770	140554770	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.2354	p.R785H	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				130	0	0	131	14	9.65517
PCDHB8	0	genome.wustl.edu	37	5	140559570	140559570	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140559570	140559570	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	missense	c.1955	p.P652L	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				90	0	0	38	21	35.5932
PCDHB18	0	genome.wustl.edu	37	5	140615913	140615913	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140615913	140615913	C	T	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				156	0	0	86	53	38.1295
PCDHB15	0	genome.wustl.edu	37	5	140626234	140626234	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140626234	140626234	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1088	p.T363I	0.940	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				83	0	0	61	46	42.9907
PCDHGA7	0	genome.wustl.edu	37	5	140762727	140762727	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140762727	140762727	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	silent	c.261	p.A87	0.973	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				86	0	0	63	39	38.2353
PCDHGA7	0	genome.wustl.edu	37	5	140763083	140763083	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140763083	140763083	G	A	SNP	PCDHGA7	ENST00000518325	human	ensembl	74_37	+1	known	missense	c.617	p.R206Q	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA7	HGNC	ENSG00000253537				20	0	0	11	7	38.8889
PCDHGA11	0	genome.wustl.edu	37	5	140800995	140800995	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140800995	140800995	C	T	SNP	PCDHGA11	ENST00000398587	human	ensembl	74_37	+1	known	silent	c.201	p.I67	0.017	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA11	HGNC	ENSG00000253873				93	0	0	59	29	32.9545
PCDHGB8P	0	genome.wustl.edu	37	5	140807364	140807364	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140807364	140807364	G	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.064	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449				21	0	0	9	14	60.8696
PCDHGA12	0	genome.wustl.edu	37	5	140811757	140811757	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140811757	140811757	C	T	SNP	PCDHGA12	ENST00000252085	human	ensembl	74_37	+1	known	silent	c.1431	p.H477	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA12	HGNC	ENSG00000253159				63	0	0	30	19	38.7755
HDAC3	0	genome.wustl.edu	37	5	141008157	141008157	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	141008157	141008157	G	A	SNP	HDAC3	ENST00000305264	human	ensembl	74_37	-1	known	silent	c.660	p.N220	0.994	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1	pfam_His_deacetylse_dom,pirsf_His_deacetylse_1,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC3	HGNC	ENSG00000171720				64	0	0	52	33	38.8235
ARHGAP26	0	genome.wustl.edu	37	5	142500657	142500657	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	142500657	142500657	T	C	SNP	ARHGAP26	ENST00000274498	human	ensembl	74_37	+1	known	missense	c.1643	p.M548T	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819				90	0	0	63	34	35.0515
TRIO	0	genome.wustl.edu	37	5	14291209	14291209	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	14291209	14291209	C	T	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.925	p.P309S	0.999	smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				97	0	0	52	39	42.8571
TRIO	0	genome.wustl.edu	37	5	14364895	14364895	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	14364895	14364895	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.2724	p.Q908	0.994	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				43	0	0	27	23	46
SH3RF2	0	genome.wustl.edu	37	5	145442093	145442093	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	145442093	145442093	G	A	SNP	SH3RF2	ENST00000359120	human	ensembl	74_37	+1	known	silent	c.2019	p.A673	0.036	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_SH3_domain	-	no_errors	SH3RF2	HGNC	ENSG00000156463				87	0	0	52	27	34.1772
TCERG1	0	genome.wustl.edu	37	5	145849218	145849218	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	145849218	145849218	A	T	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	missense	c.1310	p.E437V	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				211	0	0	121	74	37.9487
CCNJL	0	genome.wustl.edu	37	5	159707575	159707575	+	Silent	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	159707575	159707575	G	T	SNP	CCNJL	ENST00000393977	human	ensembl	74_37	-1	known	silent	c.237	p.S79	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_C-dom,pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNJL	HGNC	ENSG00000135083				136	0	0	67	46	40.708
ATP10B	0	genome.wustl.edu	37	5	160042941	160042941	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	160042941	160042941	C	T	SNP	ATP10B	ENST00000327245	human	ensembl	74_37	-1	known	missense	c.2557	p.A853T	1.000	superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10B	HGNC	ENSG00000118322				49	0	0	27	15	35.7143
GABRA1	0	genome.wustl.edu	37	5	161292758	161292758	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	161292758	161292758	C	T	SNP	GABRA1	ENST00000023897	human	ensembl	74_37	+1	known	silent	c.219	p.F73	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_GABAAa_rcpt,prints_GABBAg_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABAA_rcpt,prints_GABBAa1_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA1	HGNC	ENSG00000022355				160	0	0	87	65	42.7632
MYO10	0	genome.wustl.edu	37	5	16794807	16794807	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	16794807	16794807	C	T	SNP	MYO10	ENST00000513610	human	ensembl	74_37	-1	known	missense	c.415	p.E139K	1.000	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_P-loop_NTPase,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555				24	0	0	23	10	30.303
DUSP1	0	genome.wustl.edu	37	5	172195819	172195819	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	172195819	172195819	C	T	SNP	DUSP1	ENST00000239223	human	ensembl	74_37	-1	known	silent	c.1050	p.T350	0.066	pirsf_MKP	pfam_Dual-sp_phosphatase_cat-dom,pfam_Rhodanese-like_dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pirsf_MKP,pfscan_Rhodanese-like_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_MKP,prints_Atypical_DUSP	-	no_errors	DUSP1	HGNC	ENSG00000120129				111	0	0	86	6	6.52174
BNIP1	0	genome.wustl.edu	37	5	172585829	172585829	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	172585829	172585829	G	A	SNP	BNIP1	ENST00000231668	human	ensembl	74_37	+1	known	missense	c.481	p.G161R	1.000	NULL	pfam_Sec20	-	no_errors	BNIP1	HGNC	ENSG00000113734				67	0	0	40	28	41.1765
BASP1	0	genome.wustl.edu	37	5	17275856	17275856	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	17275856	17275856	G	A	SNP	BASP1	ENST00000322611	human	ensembl	74_37	+1	known	silent	c.531	p.S177	0.663	pfam_BASP1	pfam_BASP1	-	no_errors	BASP1	HGNC	ENSG00000176788				30	0	0	13	12	48
GPRIN1	0	genome.wustl.edu	37	5	176023843	176023843	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	176023843	176023843	C	A	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	missense	c.2993	p.R998L	1.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258				29	0	0	21	10	32.2581
SLC34A1	0	genome.wustl.edu	37	5	176815279	176815279	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	176815279	176815279	T	C	SNP	SLC34A1	ENST00000324417	human	ensembl	74_37	+1	known	missense	c.842	p.L281P	1.000	tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183				91	0	0	63	37	37
DDX41	0	genome.wustl.edu	37	5	176940358	176940358	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	176940358	176940358	A	C	SNP	DDX41	ENST00000507955	human	ensembl	74_37	-1	known	missense	c.1226	p.I409S	1.000	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_CCHC,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX41	HGNC	ENSG00000183258				112	0	0	82	42	33.871
ZFP2	0	genome.wustl.edu	37	5	178359024	178359024	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	178359024	178359024	C	T	SNP	ZFP2	ENST00000361362	human	ensembl	74_37	+1	known	missense	c.710	p.T237I	0.911	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP2	HGNC	ENSG00000198939				55	0	0	35	36	50.7042
ZNF354C	0	genome.wustl.edu	37	5	178506224	178506224	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	178506224	178506224	G	T	SNP	ZNF354C	ENST00000315475	human	ensembl	74_37	+1	known	missense	c.791	p.R264I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932				71	0	0	37	34	47.8873
ADAMTS2	0	genome.wustl.edu	37	5	178563003	178563003	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	178563003	178563003	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.1992	p.T664	0.008	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				122	0	0	72	47	39.4958
MAML1	0	genome.wustl.edu	37	5	179201504	179201504	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	179201504	179201504	A	G	SNP	MAML1	ENST00000292599	human	ensembl	74_37	+1	known	missense	c.2677	p.M893V	0.988	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML1	HGNC	ENSG00000161021				37	0	0	25	13	34.2105
TRIM41	0	genome.wustl.edu	37	5	180661180	180661180	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	180661180	180661180	T	G	SNP	TRIM41	ENST00000315073	human	ensembl	74_37	+1	known	missense	c.1298	p.L433R	1.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,pfam_DUF3631,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM41	HGNC	ENSG00000146063				98	0	0	54	26	32.5
CDH12	0	genome.wustl.edu	37	5	22078839	22078839	+	RNA	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	22078839	22078839	A	G	SNP	CDH12	ENST00000518209	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.267	-	-	-	no_errors	CDH12	HGNC	ENSG00000154162				24	0	0	13	9	40.9091
SDHA	0	genome.wustl.edu	37	5	230997	230997	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	230997	230997	C	T	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	silent	c.777	p.Y259	0.414	pfam_FAD_bind_dom,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				86	0	0	55	20	26.6667
SDHA	0	genome.wustl.edu	37	5	233669	233669	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	233669	233669	A	G	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.973	p.R325G	0.984	pfam_FAD_bind_dom,superfamily_Succ_DH/fumarate_Rdtase_cat,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578				165	0	0	113	66	36.8715
PRDM9	0	genome.wustl.edu	37	5	23527721	23527721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	23527721	23527721	C	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.2524	p.R842C	0.053	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256				165	0	0	77	37	32.4561
CDH9	0	genome.wustl.edu	37	5	26885830	26885830	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	26885830	26885830	T	G	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.1775	p.D592A	0.997	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100				21	0	0	17	11	39.2857
PDZD2	0	genome.wustl.edu	37	5	31983496	31983496	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	31983496	31983496	G	A	SNP	PDZD2	ENST00000282493	human	ensembl	74_37	+1	known	missense	c.712	p.A238T	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401				96	0	0	56	34	37.7778
IRX1	0	genome.wustl.edu	37	5	3600734	3600734	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	3600734	3600734	G	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.1324	p.V442I	0.960	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549				132	0	0	87	9	9.375
SKP2	0	genome.wustl.edu	37	5	36182090	36182090	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	36182090	36182090	G	A	SNP	SKP2	ENST00000274255	human	ensembl	74_37	+1	known	missense	c.1232	p.G411D	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	SKP2	HGNC	ENSG00000145604				46	0	0	34	17	33.3333
RICTOR	0	genome.wustl.edu	37	5	38963142	38963142	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	38963142	38963142	G	A	SNP	RICTOR	ENST00000296782	human	ensembl	74_37	-1	known	nonsense	c.1402	p.R468*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RICTOR	HGNC	ENSG00000164327				36	0	0	36	19	34.5455
FBXO4	0	genome.wustl.edu	37	5	41941319	41941319	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	41941319	41941319	T	C	SNP	FBXO4	ENST00000281623	human	ensembl	74_37	+1	known	missense	c.1100	p.L367P	0.504	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO4	HGNC	ENSG00000151876				66	0	0	41	22	34.9206
FBXO4	0	genome.wustl.edu	37	5	41941337	41941337	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	41941337	41941337	G	A	SNP	FBXO4	ENST00000281623	human	ensembl	74_37	+1	known	missense	c.1118	p.G373D	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO4	HGNC	ENSG00000151876				67	0	0	43	28	39.4366
ZNF131	0	genome.wustl.edu	37	5	43174881	43174881	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	43174881	43174881	C	T	SNP	ZNF131	ENST00000399534	human	ensembl	74_37	+1	known	silent	c.1518	p.S506	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262				48	0	0	39	4	9.30233
ITGA2	0	genome.wustl.edu	37	5	52344542	52344542	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	52344542	52344542	T	A	SNP	ITGA2	ENST00000296585	human	ensembl	74_37	+1	known	missense	c.572	p.V191E	0.998	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA2	HGNC	ENSG00000164171				110	0	0	92	52	36.1111
SNX18	0	genome.wustl.edu	37	5	53814892	53814892	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	53814892	53814892	G	A	SNP	SNX18	ENST00000326277	human	ensembl	74_37	+1	known	silent	c.1110	p.A370	0.834	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_Snx9,pfscan_Phox	pfam_Sorting_nexin_WASP-bd-dom,pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_SH3_domain,smart_Phox,pirsf_Snx9,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SNX18	HGNC	ENSG00000178996				46	0	0	18	17	48.5714
DHX29	0	genome.wustl.edu	37	5	54603263	54603263	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	54603263	54603263	T	C	SNP	DHX29	ENST00000251636	human	ensembl	74_37	-1	known	missense	c.139	p.T47A	0.039	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX29	HGNC	ENSG00000067248				106	0	0	71	45	38.7931
SKIV2L2	0	genome.wustl.edu	37	5	54618225	54618225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	54618225	54618225	G	A	SNP	SKIV2L2	ENST00000230640	human	ensembl	74_37	+1	known	missense	c.205	p.E69K	0.996	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L2	HGNC	ENSG00000039123				149	0	0	100	53	34.6405
ACTBL2	0	genome.wustl.edu	37	5	56778423	56778423	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	56778423	56778423	G	A	SNP	ACTBL2	ENST00000423391	human	ensembl	74_37	-1	known	missense	c.112	p.R38C	1.000	pfam_Actin-related,smart_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTBL2	HGNC	ENSG00000169067				42	0	0	26	9	25.7143
KIF2A	0	genome.wustl.edu	37	5	61643000	61643000	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	61643000	61643000	T	C	SNP	KIF2A	ENST00000407818	human	ensembl	74_37	+1	known	silent	c.108	p.N36	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2A	HGNC	ENSG00000068796				14	0	0	16	4	20
CARTPT	0	genome.wustl.edu	37	5	71015160	71015160	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	71015160	71015160	G	A	SNP	CARTPT	ENST00000296777	human	ensembl	74_37	+1	known	missense	c.40	p.A14T	1.000	pfam_CART	pfam_CART,superfamily_CART	-	no_errors	CARTPT	HGNC	ENSG00000164326				107	0	0	51	26	33.7662
IQGAP2	0	genome.wustl.edu	37	5	75871586	75871586	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	75871586	75871586	C	T	SNP	IQGAP2	ENST00000274364	human	ensembl	74_37	+1	known	silent	c.450	p.H150	0.593	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_CH-domain,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP2	HGNC	ENSG00000145703				55	0	0	40	17	29.8246
AP3B1	0	genome.wustl.edu	37	5	77334885	77334885	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	77334885	77334885	G	A	SNP	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	missense	c.2791	p.H931Y	1.000	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842				32	0	0	19	18	48.6486
FASTKD3	0	genome.wustl.edu	37	5	7867738	7867738	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	7867738	7867738	T	C	SNP	FASTKD3	ENST00000264669	human	ensembl	74_37	-1	known	missense	c.459	p.I153M	0.000	NULL	pfam_FAST_2,pfam_FAST_Leu-rich,pfam_RAP,smart_RAP	-	no_errors	FASTKD3	HGNC	ENSG00000124279				66	0	0	44	29	39.726
THBS4	0	genome.wustl.edu	37	5	79366474	79366474	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	79366474	79366474	C	T	SNP	THBS4	ENST00000350881	human	ensembl	74_37	+1	known	silent	c.1461	p.C487	0.998	NULL	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC	ENSG00000113296				118	0	0	79	44	35.7724
VCAN	0	genome.wustl.edu	37	5	82833213	82833213	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	82833213	82833213	C	G	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.4391	p.A1464G	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				99	0	0	54	32	37.2093
VCAN	0	genome.wustl.edu	37	5	82834710	82834710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	82834710	82834710	C	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.5888	p.A1963V	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				64	0	0	38	30	44.1176
VCAN	0	genome.wustl.edu	37	5	82836247	82836247	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	82836247	82836247	A	C	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.7425	p.K2475N	0.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				103	0	0	49	45	47.8723
GPR98	0	genome.wustl.edu	37	5	90008129	90008129	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	90008129	90008129	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.9068	p.R3023M	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				8	0	0	5	5	50
GPR98	0	genome.wustl.edu	37	5	90119297	90119297	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	90119297	90119297	G	A	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.16252	p.V5418M	0.063	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				67	0	0	39	23	37.0968
ANKRD32	0	genome.wustl.edu	37	5	94024237	94024237	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	94024237	94024237	G	A	SNP	ANKRD32	ENST00000265140	human	ensembl	74_37	+1	known	silent	c.2148	p.G716	0.987	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_BRCT_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD32	HGNC	ENSG00000133302				96	0	0	50	21	29.5775
ARSK	0	genome.wustl.edu	37	5	94901772	94901772	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	94901772	94901772	G	A	SNP	ARSK	ENST00000380009	human	ensembl	74_37	+1	known	missense	c.197	p.R66H	0.864	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSK	HGNC	ENSG00000164291				46	0	0	22	24	52.1739
RHOBTB3	0	genome.wustl.edu	37	5	95119641	95119641	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	95119641	95119641	A	G	SNP	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	missense	c.1597	p.I533V	0.938	NULL	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				70	0	0	71	7	8.97436
ELL2	0	genome.wustl.edu	37	5	95234256	95234256	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	95234256	95234256	G	A	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.1213	p.R405W	1.000	NULL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985				98	0	0	57	26	31.3253
SEC63	0	genome.wustl.edu	37	6	108214751	108214751	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	108214751	108214751	T	C	SNP	SEC63	ENST00000369002	human	ensembl	74_37	-1	known	missense	c.1609	p.T537A	0.982	superfamily_ARM-type_fold,smart_Sec63-dom	pfam_Sec63-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_ARM-type_fold,smart_DnaJ_domain,smart_Sec63-dom,prints_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	SEC63	HGNC	ENSG00000025796				109	1	0.909091	118	20	14.4928
FOXO3	0	genome.wustl.edu	37	6	108985460	108985460	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	108985460	108985460	C	T	SNP	FOXO3	ENST00000343882	human	ensembl	74_37	+1	known	missense	c.1424	p.T475I	0.996	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXO3	HGNC	ENSG00000118689				44	0	0	32	23	41.8182
ZBTB24	0	genome.wustl.edu	37	6	109787639	109787639	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	109787639	109787639	G	A	SNP	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	silent	c.1509	p.D503	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				98	0	0	75	39	34.2105
ZBTB24	0	genome.wustl.edu	37	6	109796613	109796613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	109796613	109796613	C	T	SNP	ZBTB24	ENST00000230122	human	ensembl	74_37	-1	known	missense	c.1277	p.R426Q	0.991	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB24	HGNC	ENSG00000112365				84	0	0	54	29	34.9398
TUBE1	0	genome.wustl.edu	37	6	112400892	112400892	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	112400892	112400892	G	A	SNP	TUBE1	ENST00000368662	human	ensembl	74_37	-1	known	missense	c.392	p.S131L	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Epsilon_tubulin,prints_Tubulin	-	no_errors	TUBE1	HGNC	ENSG00000074935				78	0	0	55	41	42.7083
ROS1	0	genome.wustl.edu	37	6	117642517	117642517	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	117642517	117642517	T	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.5682	p.E1894D	0.902	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				190	0	0	112	65	36.7232
ROS1	0	genome.wustl.edu	37	6	117662759	117662759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	117662759	117662759	C	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.4706	p.R1569Q	0.003	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				45	0	0	44	22	33.3333
NUS1	0	genome.wustl.edu	37	6	118014204	118014204	+	Splice_Site	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	118014204	118014204	G	T	SNP	NUS1	ENST00000368494	human	ensembl	74_37	+1	known	splice_site	c.416-1	e2-1	1.000	-	-	-	no_errors	NUS1	HGNC	ENSG00000153989				32	0	0	18	11	37.931
HSF2	0	genome.wustl.edu	37	6	122753116	122753116	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	122753116	122753116	C	T	SNP	HSF2	ENST00000368455	human	ensembl	74_37	+1	known	silent	c.1362	p.L454	0.103	pfam_Vert_HSTF_C	pfam_Vert_HSTF_C,pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd	-	no_errors	HSF2	HGNC	ENSG00000025156				154	0	0	91	71	43.8272
LAMA2	0	genome.wustl.edu	37	6	129511427	129511427	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	129511427	129511427	C	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	silent	c.1545	p.C515	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569				48	0	0	29	24	45.283
MCUR1	0	genome.wustl.edu	37	6	13801587	13801587	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	13801587	13801587	G	A	SNP	MCUR1	ENST00000379170	human	ensembl	74_37	-1	known	missense	c.674	p.A225V	0.991	pfam_DUF1640	pfam_DUF1640	-	no_errors	MCUR1	HGNC	ENSG00000050393				106	0	0	20	30	60
KIAA1244	0	genome.wustl.edu	37	6	138619829	138619829	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	138619829	138619829	T	C	SNP	KIAA1244	ENST00000251691	human	ensembl	74_37	+1	known	silent	c.3735	p.N1245	0.008	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold,superfamily_Sec7_dom,smart_Sec7_dom	-	no_errors	KIAA1244	HGNC	ENSG00000112379				24	0	0	23	12	34.2857
LATS1	0	genome.wustl.edu	37	6	150004891	150004891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	150004891	150004891	G	A	SNP	LATS1	ENST00000253339	human	ensembl	74_37	-1	known	missense	c.1334	p.P445L	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_UBA/Ts_N,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS1	HGNC	ENSG00000131023				252	0	0	169	97	36.4662
NUP43	0	genome.wustl.edu	37	6	150067677	150067677	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	150067677	150067677	G	A	SNP	NUP43	ENST00000367403	human	ensembl	74_37	-1	known	silent	c.138	p.R46	0.829	NULL	superfamily_WD40_repeat_dom	-	no_errors	NUP43	HGNC	ENSG00000120253				65	0	0	42	32	43.2432
PLEKHG1	0	genome.wustl.edu	37	6	151161247	151161247	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	151161247	151161247	G	A	SNP	PLEKHG1	ENST00000358517	human	ensembl	74_37	+1	known	missense	c.3373	p.A1125T	0.124	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG1	HGNC	ENSG00000120278				112	0	0	58	42	42
MTHFD1L	0	genome.wustl.edu	37	6	151355726	151355726	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	151355726	151355726	A	G	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	missense	c.2684	p.Y895C	1.000	pfam_Formate_THF_ligase,superfamily_P-loop_NTPase	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254				41	0	0	26	15	36.5854
RMND1	0	genome.wustl.edu	37	6	151766824	151766824	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	151766824	151766824	G	A	SNP	RMND1	ENST00000367303	human	ensembl	74_37	-1	known	silent	c.123	p.C41	0.074	NULL	pfam_DUF155	-	no_errors	RMND1	HGNC	ENSG00000155906				93	0	0	54	34	38.6364
ARID1B	0	genome.wustl.edu	37	6	157528929	157528929	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	157528929	157528929	C	T	SNP	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	silent	c.6774	p.H2258	1.000	superfamily_ARM-type_fold	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				151	0	0	88	57	39.3103
TULP4	0	genome.wustl.edu	37	6	158924181	158924181	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	158924181	158924181	C	T	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	silent	c.3486	p.D1162	0.995	NULL	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				117	0	0	74	41	35.6522
RSPH3	0	genome.wustl.edu	37	6	159401904	159401904	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	159401904	159401904	G	A	SNP	RSPH3	ENST00000252655	human	ensembl	74_37	-1	known	missense	c.1187	p.A396V	0.986	pfam_Radial_spoke_3	pfam_Radial_spoke_3	-	no_errors	RSPH3	HGNC	ENSG00000130363				65	0	0	41	27	39.7059
SLC22A3	0	genome.wustl.edu	37	6	160864677	160864677	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	160864677	160864677	G	A	SNP	SLC22A3	ENST00000392145	human	ensembl	74_37	+1	known	silent	c.1416	p.S472	0.246	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A3	HGNC	ENSG00000146477				57	0	0	29	16	35.5556
PACRG	0	genome.wustl.edu	37	6	163149154	163149154	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	163149154	163149154	T	C	SNP	PACRG	ENST00000542669	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	PACRG	HGNC	ENSG00000112530				66	0	0	37	36	49.3151
UNC93A	0	genome.wustl.edu	37	6	167717522	167717522	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	167717522	167717522	G	A	SNP	UNC93A	ENST00000230256	human	ensembl	74_37	+1	known	silent	c.741	p.S247	0.675	superfamily_MFS_dom_general_subst_transpt	pfam_Ion_channel_UNC-93,superfamily_MFS_dom_general_subst_transpt	-	no_errors	UNC93A	HGNC	ENSG00000112494				91	0	0	51	28	35.443
TBP	0	genome.wustl.edu	37	6	170871058	170871058	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	170871058	170871058	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.234	p.Q78	0.998	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				46	0	0	36	4	10
RBM24	0	genome.wustl.edu	37	6	17292117	17292117	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	17292117	17292117	T	C	SNP	RBM24	ENST00000379052	human	ensembl	74_37	+1	known	missense	c.478	p.Y160H	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM24	HGNC	ENSG00000112183				80	0	0	21	42	66.6667
KDM1B	0	genome.wustl.edu	37	6	18161563	18161563	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	18161563	18161563	G	A	SNP	KDM1B	ENST00000388870	human	ensembl	74_37	+1	known	silent	c.93	p.K31	1.000	NULL	pfam_Amino_oxidase,pfam_Znf_CW,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_SWIRM,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,pfam_CHP00275_HI0933-like,pfam_FAD_bind_dom,superfamily_Homeodomain-like,pfscan_SWIRM,pfscan_Znf_CW	-	no_errors	KDM1B	HGNC	ENSG00000165097				40	0	0	25	3	10.7143
MRS2	0	genome.wustl.edu	37	6	24412566	24412566	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	24412566	24412566	C	T	SNP	MRS2	ENST00000443868	human	ensembl	74_37	+1	known	silent	c.540	p.L180	0.911	NULL	NULL	-	no_errors	MRS2	HGNC	ENSG00000124532				118	0	0	19	37	66.0714
LRRC16A	0	genome.wustl.edu	37	6	25606376	25606376	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	25606376	25606376	C	T	SNP	LRRC16A	ENST00000329474	human	ensembl	74_37	+1	novel	missense	c.3722	p.A1241V	0.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691				48	0	0	21	11	34.375
SLC17A3	0	genome.wustl.edu	37	6	25845699	25845699	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	25845699	25845699	C	T	SNP	SLC17A3	ENST00000397060	human	ensembl	74_37	-1	known	missense	c.1408	p.V470I	0.976	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A3	HGNC	ENSG00000124564				94	0	0	60	32	34.7826
HIST1H1T	0	genome.wustl.edu	37	6	26108248	26108248	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	26108248	26108248	C	T	SNP	HIST1H1T	ENST00000338379	human	ensembl	74_37	-1	known	missense	c.74	p.R25Q	0.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475				55	0	0	25	23	47.9167
HIST1H1T	0	genome.wustl.edu	37	6	26108309	26108309	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	26108309	26108309	C	T	SNP	HIST1H1T	ENST00000338379	human	ensembl	74_37	-1	known	missense	c.13	p.V5M	0.002	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1T	HGNC	ENSG00000187475				43	0	0	28	18	39.1304
MRPS18B	0	genome.wustl.edu	37	6	30590656	30590656	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	30590656	30590656	C	A	SNP	MRPS18B	ENST00000259873	human	ensembl	74_37	+1	known	silent	c.402	p.I134	1.000	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	pfam_Ribosomal_S18,superfamily_Ribosomal_S18	-	no_errors	MRPS18B	HGNC	ENSG00000204568				53	0	0	39	17	30.3571
DDR1	0	genome.wustl.edu	37	6	30860096	30860096	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	30860096	30860096	G	A	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	silent	c.876	p.T292	0.067	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				45	0	0	34	17	33.3333
VARS2	0	genome.wustl.edu	37	6	30883960	30883960	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	30883960	30883960	G	A	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	missense	c.695	p.R232Q	0.310	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411				80	0	0	38	25	39.6825
DPCR1	0	genome.wustl.edu	37	6	30920773	30920773	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	30920773	30920773	G	A	SNP	DPCR1	ENST00000304311	human	ensembl	74_37	+1	known	missense	c.587	p.R196H	0.000	NULL	NULL	-	no_errors	DPCR1	HGNC	ENSG00000168631				49	0	0	33	18	35.2941
NFKBIL1	0	genome.wustl.edu	37	6	31526079	31526079	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	31526079	31526079	C	T	SNP	NFKBIL1	ENST00000376148	human	ensembl	74_37	+1	known	silent	c.837	p.A279	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	NFKBIL1	HGNC	ENSG00000204498				12	0	0	8	3	27.2727
BAG6	0	genome.wustl.edu	37	6	31619438	31619438	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	31619438	31619438	C	T	SNP	BAG6	ENST00000404765	human	ensembl	74_37	-1	known	missense	c.103	p.A35T	1.000	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_DUF3538,pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	BAG6	HGNC	ENSG00000204463				116	0	0	42	31	42.4658
MSH5	0	genome.wustl.edu	37	6	31715180	31715180	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	31715180	31715180	C	A	SNP	MSH5	ENST00000375742	human	ensembl	74_37	+1	known	nonsense	c.834	p.C278*	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410				36	0	0	15	16	51.6129
TNXB	0	genome.wustl.edu	37	6	32020768	32020768	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32020768	32020768	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.8788	p.A2930T	0.769	NULL	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				59	0	0	26	12	31.5789
TNXB	0	genome.wustl.edu	37	6	32035444	32035444	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32035444	32035444	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6538	p.V2180I	0.031	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				47	0	0	24	14	36.8421
TNXB	0	genome.wustl.edu	37	6	32035620	32035620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32035620	32035620	C	T	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	missense	c.6362	p.R2121H	0.903	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				83	0	0	46	28	37.8378
TNXB	0	genome.wustl.edu	37	6	32063940	32063940	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32063940	32063940	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	nonsense	c.1690	p.R564*	0.995	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477				15	0	0	6	5	45.4545
NOTCH4	0	genome.wustl.edu	37	6	32172014	32172014	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32172014	32172014	G	A	SNP	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	silent	c.3018	p.D1006	1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301				42	0	0	27	20	42.5532
HLA-DRA	0	genome.wustl.edu	37	6	32407731	32407731	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	32407731	32407731	G	A	SNP	HLA-DRA	ENST00000395388	human	ensembl	74_37	+1	known	missense	c.4	p.A2T	0.908	NULL	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRA	HGNC	ENSG00000204287				37	0	0	53	4	7.01754
ITPR3	0	genome.wustl.edu	37	6	33634933	33634933	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	33634933	33634933	C	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.1579	p.R527C	0.997	pfam_Ca-rel_channel	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				138	0	0	69	27	28.125
ITPR3	0	genome.wustl.edu	37	6	33653503	33653503	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	33653503	33653503	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	missense	c.5566	p.E1856K	0.996	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				83	0	0	51	26	33.7662
GRM4	0	genome.wustl.edu	37	6	34059859	34059859	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	34059859	34059859	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	silent	c.537	p.Y179	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				66	0	0	32	23	41.8182
GRM4	0	genome.wustl.edu	37	6	34100766	34100766	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	34100766	34100766	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.508	p.R170C	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493				53	0	0	26	14	35
DUSP22	0	genome.wustl.edu	37	6	345898	345898	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	345898	345898	G	A	SNP	DUSP22	ENST00000419235	human	ensembl	74_37	+1	known	missense	c.233	p.R78Q	1.000	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP22	HGNC	ENSG00000112679				65	0	0	57	6	9.52381
SCUBE3	0	genome.wustl.edu	37	6	35214016	35214016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	35214016	35214016	G	A	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	missense	c.2834	p.R945Q	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				127	0	0	81	34	29.5652
PPARD	0	genome.wustl.edu	37	6	35392205	35392205	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	35392205	35392205	G	A	SNP	PPARD	ENST00000311565	human	ensembl	74_37	+1	known	missense	c.727	p.V243M	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd,prints_1Cnucl_rcpt_B	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_1Cnucl_rcpt_B,prints_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A	-	no_errors	PPARD	HGNC	ENSG00000112033				62	0	0	45	20	30.7692
ARMC12	0	genome.wustl.edu	37	6	35704936	35704936	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	35704936	35704936	C	T	SNP	ARMC12	ENST00000288065	human	ensembl	74_37	+1	known	silent	c.51	p.S17	0.006	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	ARMC12	HGNC	ENSG00000157343				62	0	0	43	30	41.0959
KCTD20	0	genome.wustl.edu	37	6	36442765	36442765	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	36442765	36442765	G	A	SNP	KCTD20	ENST00000373731	human	ensembl	74_37	+1	known	silent	c.360	p.T120	0.002	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD20	HGNC	ENSG00000112078				98	0	0	66	38	36.5385
CPNE5	0	genome.wustl.edu	37	6	36710078	36710078	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	36710078	36710078	C	T	SNP	CPNE5	ENST00000244751	human	ensembl	74_37	-1	known	silent	c.1749	p.T583	0.875	NULL	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE5	HGNC	ENSG00000124772				56	0	0	61	8	11.5942
ZFAND3	0	genome.wustl.edu	37	6	38120035	38120035	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	38120035	38120035	G	A	SNP	ZFAND3	ENST00000287218	human	ensembl	74_37	+1	known	missense	c.554	p.R185H	1.000	pfam_Znf_AN1,smart_Znf_AN1,pfscan_Znf_AN1	pfam_Znf_AN1,pfam_Znf_A20,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND3	HGNC	ENSG00000156639				158	0	0	91	60	39.7351
FAM50B	0	genome.wustl.edu	37	6	3850382	3850382	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	3850382	3850382	C	T	SNP	FAM50B	ENST00000380272	human	ensembl	74_37	+1	novel	missense	c.337	p.R113C	0.000	pfam_XAP5	pfam_XAP5	-	no_errors	FAM50B	HGNC	ENSG00000145945				18	0	0	12	14	53.8462
BTBD9	0	genome.wustl.edu	37	6	38548022	38548022	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	38548022	38548022	G	A	SNP	BTBD9	ENST00000403056	human	ensembl	74_37	-1	known	missense	c.1006	p.R336W	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	pfam_BTB_POZ,pfam_BACK,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_BTB/POZ_fold,superfamily_Galactose-bd-like,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD9	HGNC	ENSG00000183826				46	0	0	43	26	37.6812
GLO1	0	genome.wustl.edu	37	6	38654677	38654677	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	38654677	38654677	A	T	SNP	GLO1	ENST00000373365	human	ensembl	74_37	-1	known	missense	c.158	p.L53H	1.000	pfam_Glyas_Fos-R_dOase_dom,tigrfam_Glyoxalase_1	pfam_Glyas_Fos-R_dOase_dom,tigrfam_Glyoxalase_1	-	no_errors	GLO1	HGNC	ENSG00000124767				51	0	0	35	25	41.6667
KCNK17	0	genome.wustl.edu	37	6	39267230	39267230	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	39267230	39267230	G	A	SNP	KCNK17	ENST00000373231	human	ensembl	74_37	-1	known	silent	c.972	p.H324	0.004	pirsf_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780				43	0	0	25	12	32.4324
KCNK17	0	genome.wustl.edu	37	6	39267459	39267459	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	39267459	39267459	C	A	SNP	KCNK17	ENST00000373231	human	ensembl	74_37	-1	known	missense	c.743	p.W248L	1.000	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,pirsf_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK17	HGNC	ENSG00000124780				169	0	0	96	45	31.9149
KCNK16	0	genome.wustl.edu	37	6	39290200	39290200	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	39290200	39290200	C	T	SNP	KCNK16	ENST00000425054	human	ensembl	74_37	-1	known	silent	c.117	p.A39	0.007	NULL	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl	-	no_errors	KCNK16	HGNC	ENSG00000095981				38	0	0	46	5	9.80392
DAAM2	0	genome.wustl.edu	37	6	39856480	39856480	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	39856480	39856480	C	T	SNP	DAAM2	ENST00000274867	human	ensembl	74_37	+1	known	missense	c.2086	p.R696W	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DAAM2	HGNC	ENSG00000146122				39	0	0	27	17	38.6364
C6orf201	0	genome.wustl.edu	37	6	4087803	4087803	+	RNA	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	4087803	4087803	A	T	SNP	C6orf201	ENST00000360378	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C6orf201	HGNC	ENSG00000185689				126	0	0	80	64	44.4444
TREM1	0	genome.wustl.edu	37	6	41250435	41250435	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	41250435	41250435	T	C	SNP	TREM1	ENST00000244709	human	ensembl	74_37	-1	known	missense	c.104	p.Q35R	0.004	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731				126	0	0	74	50	40.3226
TRERF1	0	genome.wustl.edu	37	6	42236784	42236784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	42236784	42236784	C	T	SNP	TRERF1	ENST00000541110	human	ensembl	74_37	-1	known	missense	c.545	p.R182H	1.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496				115	0	0	99	6	5.71429
UBR2	0	genome.wustl.edu	37	6	42585024	42585024	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	42585024	42585024	G	A	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	missense	c.1229	p.R410Q	1.000	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				109	1	0.909091	58	40	40.8163
PRPH2	0	genome.wustl.edu	37	6	42689775	42689775	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	42689775	42689775	G	A	SNP	PRPH2	ENST00000230381	human	ensembl	74_37	-1	known	missense	c.298	p.P100S	0.678	pfam_Tetraspanin/Peripherin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	PRPH2	HGNC	ENSG00000112619				57	0	0	45	26	36.6197
CUL9	0	genome.wustl.edu	37	6	43153844	43153844	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	43153844	43153844	A	G	SNP	CUL9	ENST00000252050	human	ensembl	74_37	+1	known	missense	c.902	p.E301G	1.000	NULL	pfam_Cullin_N,pfam_CPH_domain,pfam_Znf_C6HC,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,superfamily_UBA-like,smart_Cullin_neddylation_domain,smart_Znf_C6HC,pfscan_Znf_RING,pfscan_Cullin_homology	-	no_errors	CUL9	HGNC	ENSG00000112659				75	0	0	85	5	5.55556
AARS2	0	genome.wustl.edu	37	6	44272877	44272877	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	44272877	44272877	G	A	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	missense	c.1493	p.A498V	0.436	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608				110	0	0	70	37	34.5794
RUNX2	0	genome.wustl.edu	37	6	45390581	45390581	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	45390581	45390581	G	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	nonsense	c.514	p.E172*	1.000	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813				51	0	0	19	12	38.7097
PAQR8	0	genome.wustl.edu	37	6	52268150	52268150	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	52268150	52268150	C	A	SNP	PAQR8	ENST00000360726	human	ensembl	74_37	+1	known	silent	c.139	p.R47	1.000	NULL	pfam_HlyIII-related,superfamily_C-type_lectin_fold	-	no_errors	PAQR8	HGNC	ENSG00000170915				75	0	0	51	29	36.25
FBXO9	0	genome.wustl.edu	37	6	52957325	52957325	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	52957325	52957325	G	A	SNP	FBXO9	ENST00000244426	human	ensembl	74_37	+1	known	missense	c.782	p.R261Q	1.000	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO9	HGNC	ENSG00000112146				80	0	0	49	48	49.4845
KIAA1586	0	genome.wustl.edu	37	6	56917539	56917539	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	56917539	56917539	T	C	SNP	KIAA1586	ENST00000370733	human	ensembl	74_37	+1	known	missense	c.242	p.V81A	0.815	NULL	superfamily_RNaseH-like_dom	-	no_errors	KIAA1586	HGNC	ENSG00000168116				43	0	0	28	18	39.1304
ZNF451	0	genome.wustl.edu	37	6	57012049	57012049	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	57012049	57012049	G	A	SNP	ZNF451	ENST00000370706	human	ensembl	74_37	+1	known	missense	c.1166	p.R389Q	0.339	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF451	HGNC	ENSG00000112200				82	0	0	36	26	41.9355
KHDRBS2	0	genome.wustl.edu	37	6	62604604	62604604	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	62604604	62604604	C	T	SNP	KHDRBS2	ENST00000281156	human	ensembl	74_37	-1	known	missense	c.746	p.G249E	0.975	NULL	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	KHDRBS2	HGNC	ENSG00000112232				74	0	0	35	32	47.7612
DDX43	0	genome.wustl.edu	37	6	74117732	74117732	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	74117732	74117732	A	T	SNP	DDX43	ENST00000370336	human	ensembl	74_37	+1	known	nonsense	c.1087	p.K363*	0.057	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_KH_dom_type_1,superfamily_P-loop_NTPase,smart_KH_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_KH_dom_type_1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX43	HGNC	ENSG00000080007				87	0	0	43	20	31.746
DSP	0	genome.wustl.edu	37	6	7565711	7565711	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	7565711	7565711	C	T	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.897	p.S299	0.777	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				49	0	0	51	4	7.27273
DSP	0	genome.wustl.edu	37	6	7578041	7578041	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	7578041	7578041	C	A	SNP	DSP	ENST00000379802	human	ensembl	74_37	+1	known	silent	c.2907	p.T969	0.976	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DSP	HGNC	ENSG00000096696				109	0	0	69	50	42.0168
COL12A1	0	genome.wustl.edu	37	6	75799910	75799910	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	75799910	75799910	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.8857	p.A2953T	0.042	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				296	0	0	175	83	32.1705
COL12A1	0	genome.wustl.edu	37	6	75834938	75834938	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	75834938	75834938	A	G	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.6512	p.L2171S	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				43	0	0	31	20	39.2157
COL12A1	0	genome.wustl.edu	37	6	75890672	75890672	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	75890672	75890672	T	C	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.2147	p.E716G	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				144	0	0	90	41	31.2977
MYO6	0	genome.wustl.edu	37	6	76623869	76623869	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	76623869	76623869	C	T	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.3532	p.R1178C	1.000	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				167	0	0	99	58	36.9427
MYO6	0	genome.wustl.edu	37	6	76624686	76624686	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	76624686	76624686	G	A	SNP	MYO6	ENST00000369981	human	ensembl	74_37	+1	known	missense	c.3818	p.R1273Q	0.997	NULL	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586				35	0	0	15	9	37.5
IMPG1	0	genome.wustl.edu	37	6	76713645	76713645	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	76713645	76713645	G	A	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	silent	c.1158	p.A386	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706				54	0	0	41	23	35.9375
TBX18	0	genome.wustl.edu	37	6	85447043	85447043	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	85447043	85447043	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.1184	p.C395Y	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				94	0	0	41	26	38.806
TBX18	0	genome.wustl.edu	37	6	85473658	85473658	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	85473658	85473658	G	A	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.242	p.A81V	0.946	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837				9	0	0	9	6	40
AKIRIN2	0	genome.wustl.edu	37	6	88391420	88391420	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	88391420	88391420	T	C	SNP	AKIRIN2	ENST00000257787	human	ensembl	74_37	-1	known	silent	c.297	p.E99	1.000	NULL	NULL	-	no_errors	AKIRIN2	HGNC	ENSG00000135334				26	0	0	21	8	27.5862
ZAN	0	genome.wustl.edu	37	7	100390105	100390105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	100390105	100390105	C	T	SNP	ZAN	ENST00000546213	human	ensembl	74_37	+1	known	missense	c.3038	p.T1013M	0.002	NULL	pfam_VWF_type-D,pfam_TIL_dom,pfam_Unchr_dom_Cys-rich,pfam_EG-like_dom,superfamily_TIL_dom,smart_EG-like_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,pfscan_EG-like_dom	-	no_errors	ZAN	HGNC	ENSG00000146839				45	0	0	31	17	35.4167
EPHB4	0	genome.wustl.edu	37	7	100405135	100405135	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	100405135	100405135	C	T	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.2186	p.R729Q	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411				132	0	0	46	42	47.7273
ORAI2	0	genome.wustl.edu	37	7	102087230	102087230	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	102087230	102087230	G	C	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	missense	c.496	p.V166L	1.000	pfam_CRAC_channel	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				149	0	0	89	46	34.0741
LRRC17	0	genome.wustl.edu	37	7	102575025	102575025	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	102575025	102575025	C	T	SNP	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	missense	c.665	p.P222L	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				45	0	0	35	19	35.1852
PSMC2	0	genome.wustl.edu	37	7	103004703	103004703	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	103004703	103004703	G	A	SNP	PSMC2	ENST00000292644	human	ensembl	74_37	+1	known	silent	c.705	p.A235	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC2	HGNC	ENSG00000161057				97	0	0	105	51	32.6923
RELN	0	genome.wustl.edu	37	7	103185661	103185661	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	103185661	103185661	C	T	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.6433	p.G2145R	1.000	pfam_EGF_extracell,superfamily_Sialidases,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				86	0	0	63	45	41.6667
RELN	0	genome.wustl.edu	37	7	103197465	103197465	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	103197465	103197465	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	missense	c.5756	p.T1919I	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				167	0	0	118	88	42.7184
PUS7	0	genome.wustl.edu	37	7	105121515	105121515	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	105121515	105121515	T	C	SNP	PUS7	ENST00000356362	human	ensembl	74_37	-1	known	missense	c.1159	p.T387A	1.000	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	pfam_PsdUridine_synth_TruD,superfamily_PsdUridine_synth_cat_dom,pirsf_PsdUridine_synth_TruD_euk,pfscan_PsdUridine_synth_TruD_insert,tigrfam_PsdUridine_synth_TruD	-	no_errors	PUS7	HGNC	ENSG00000091127				40	0	0	24	20	45.4545
ATXN7L1	0	genome.wustl.edu	37	7	105516905	105516905	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	105516905	105516905	G	T	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	missense	c.100	p.R34S	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776				38	0	0	21	17	44.7368
PIK3CG	0	genome.wustl.edu	37	7	106508275	106508275	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	106508275	106508275	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.269	p.R90Q	0.003	NULL	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851				55	0	0	19	14	42.4242
LAMB1	0	genome.wustl.edu	37	7	107591745	107591745	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	107591745	107591745	A	G	SNP	LAMB1	ENST00000222399	human	ensembl	74_37	-1	known	missense	c.3317	p.M1106T	1.000	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Prefoldin,superfamily_t-SNARE,superfamily_P-loop_NTPase,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_Laminin_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB1	HGNC	ENSG00000091136				56	0	0	39	11	22
NRCAM	0	genome.wustl.edu	37	7	107872810	107872810	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	107872810	107872810	G	A	SNP	NRCAM	ENST00000379028	human	ensembl	74_37	-1	known	silent	c.387	p.R129	0.065	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NRCAM	HGNC	ENSG00000091129				114	0	0	122	9	6.87023
IQUB	0	genome.wustl.edu	37	7	123142741	123142741	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	123142741	123142741	A	G	SNP	IQUB	ENST00000324698	human	ensembl	74_37	-1	known	silent	c.933	p.I311	1.000	NULL	pfam_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	IQUB	HGNC	ENSG00000164675				43	0	0	31	3	8.82353
SND1	0	genome.wustl.edu	37	7	127338982	127338982	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	127338982	127338982	C	A	SNP	SND1	ENST00000354725	human	ensembl	74_37	+1	known	silent	c.403	p.R135	1.000	pfam_Staphylococal_nuclease_OB-fold,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Staphylococal_nuclease_OB-fold	pfam_Staphylococal_nuclease_OB-fold,pfam_Tudor,superfamily_Staphylococal_nuclease_OB-fold,smart_Staphylococal_nuclease_OB-fold,smart_Tudor,pirsf_Silence_cplx_Nase-comp_TudorSN,pfscan_Tudor,pfscan_Staphylococal_nuclease_OB-fold	-	no_errors	SND1	HGNC	ENSG00000197157				37	0	0	20	14	41.1765
LRRC4	0	genome.wustl.edu	37	7	127669747	127669747	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	127669747	127669747	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.947	p.R316Q	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				34	0	0	23	10	30.303
LRRC4	0	genome.wustl.edu	37	7	127669830	127669830	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	127669830	127669830	C	T	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	silent	c.864	p.P288	0.041	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				56	0	0	35	12	25.5319
FAM71F1	0	genome.wustl.edu	37	7	128359088	128359088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	128359088	128359088	C	T	SNP	FAM71F1	ENST00000315184	human	ensembl	74_37	+1	known	missense	c.638	p.T213M	1.000	NULL	pfam_DUF3699	-	no_errors	FAM71F1	HGNC	ENSG00000135248				132	0	0	73	38	34.2342
FLNC	0	genome.wustl.edu	37	7	128486812	128486812	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	128486812	128486812	G	A	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.4141	p.G1381R	0.997	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591				61	0	0	41	17	29.3103
STRA8	0	genome.wustl.edu	37	7	134928082	134928082	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	134928082	134928082	C	A	SNP	STRA8	ENST00000275764	human	ensembl	74_37	+1	known	silent	c.339	p.S113	0.716	superfamily_bHLH_dom	superfamily_bHLH_dom	-	no_errors	STRA8	HGNC	ENSG00000146857				44	0	0	48	24	33.3333
DGKI	0	genome.wustl.edu	37	7	137294333	137294333	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	137294333	137294333	C	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.1016	p.R339Q	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				35	0	0	28	22	44
BRAF	0	genome.wustl.edu	37	7	140534454	140534454	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	140534454	140534454	T	C	SNP	BRAF	ENST00000288602	human	ensembl	74_37	-1	known	silent	c.459	p.Q153	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	BRAF	HGNC	ENSG00000157764				106	0	0	89	62	41.0596
SSBP1	0	genome.wustl.edu	37	7	141438980	141438980	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	141438980	141438980	C	A	SNP	SSBP1	ENST00000265304	human	ensembl	74_37	+1	known	missense	c.14	p.P5H	0.999	NULL	pfam_Primosome_PriB/ssb,superfamily_NA-bd_OB-fold,pfscan_Primosome_PriB/ssb,tigrfam_ssDNA-bd	-	no_errors	SSBP1	HGNC	ENSG00000106028				111	0	0	73	47	39.1667
TAS2R40	0	genome.wustl.edu	37	7	142919509	142919509	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	142919509	142919509	C	T	SNP	TAS2R40	ENST00000408947	human	ensembl	74_37	+1	known	missense	c.338	p.A113V	0.973	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R40	HGNC	ENSG00000221937				145	0	0	90	46	33.8235
FAM115C	0	genome.wustl.edu	37	7	143400364	143400364	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	143400364	143400364	G	A	SNP	FAM115C	ENST00000441159	human	ensembl	74_37	+1	known	missense	c.277	p.V93M	0.000	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379				101	0	0	64	18	21.9512
ARHGEF5	0	genome.wustl.edu	37	7	144068294	144068294	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	144068294	144068294	G	A	SNP	ARHGEF5	ENST00000056217	human	ensembl	74_37	+1	known	missense	c.3572	p.R1191H	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF5	HGNC	ENSG00000050327				262	0	0	284	40	12.3457
CNTNAP2	0	genome.wustl.edu	37	7	147183036	147183036	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	147183036	147183036	C	T	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	silent	c.1680	p.P560	1.000	pfam_EG-like_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				144	0	0	91	48	34.5324
ZNF783	0	genome.wustl.edu	37	7	148978785	148978785	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	148978785	148978785	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.992	p.P331L	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				27	0	0	16	4	20
ZNF783	0	genome.wustl.edu	37	7	148979012	148979012	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	148979012	148979012	C	T	SNP	ZNF783	ENST00000434415	human	ensembl	74_37	+1	known	missense	c.1219	p.R407C	0.993	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF783	HGNC	ENSG00000204946				16	0	0	11	4	26.6667
KRBA1	0	genome.wustl.edu	37	7	149430494	149430494	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	149430494	149430494	C	T	SNP	KRBA1	ENST00000255992	human	ensembl	74_37	+1	known	silent	c.2448	p.L816	0.000	NULL	NULL	-	no_errors	KRBA1	HGNC	ENSG00000133619				22	0	0	12	11	47.8261
SSPO	0	genome.wustl.edu	37	7	149485991	149485991	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	149485991	149485991	G	A	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558				40	0	0	15	15	50
AOC1	0	genome.wustl.edu	37	7	150554844	150554844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	150554844	150554844	G	A	SNP	AOC1	ENST00000416793	human	ensembl	74_37	+1	known	missense	c.1286	p.R429Q	1.000	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC1	HGNC	ENSG00000002726				62	0	0	28	36	56.25
SLC4A2	0	genome.wustl.edu	37	7	150771378	150771378	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	150771378	150771378	C	T	SNP	SLC4A2	ENST00000413384	human	ensembl	74_37	+1	known	missense	c.2788	p.R930W	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_2,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A2	HGNC	ENSG00000164889				116	0	0	47	33	41.25
KMT2C	0	genome.wustl.edu	37	7	151877839	151877839	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	151877839	151877839	T	C	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.7106	p.N2369S	0.630	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				52	0	0	44	30	40.5405
DPP6	0	genome.wustl.edu	37	7	154561207	154561207	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	154561207	154561207	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	missense	c.964	p.R322C	1.000	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226				41	0	0	27	23	46
HTR5A	0	genome.wustl.edu	37	7	154862986	154862986	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	154862986	154862986	C	T	SNP	HTR5A	ENST00000287907	human	ensembl	74_37	+1	known	missense	c.377	p.T126M	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt	-	no_errors	HTR5A	HGNC	ENSG00000157219				49	0	0	28	17	37.7778
INSIG1	0	genome.wustl.edu	37	7	155094088	155094088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	155094088	155094088	C	T	SNP	INSIG1	ENST00000340368	human	ensembl	74_37	+1	known	missense	c.665	p.T222M	0.999	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG1	HGNC	ENSG00000186480				55	0	0	28	22	44
CNPY1	0	genome.wustl.edu	37	7	155301697	155301697	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	155301697	155301697	C	T	SNP	CNPY1	ENST00000321736	human	ensembl	74_37	-1	putative	silent	c.36	p.T12	0.000	pfam_DUF3456	pfam_DUF3456	-	no_errors	CNPY1	HGNC	ENSG00000146910				78	0	0	58	33	36.2637
RBM33	0	genome.wustl.edu	37	7	155534589	155534589	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	155534589	155534589	G	A	SNP	RBM33	ENST00000401878	human	ensembl	74_37	+1	known	missense	c.2126	p.R709H	1.000	NULL	smart_RRM_dom	-	no_errors	RBM33	HGNC	ENSG00000184863				126	0	0	99	55	35.7143
DNAJB6	0	genome.wustl.edu	37	7	157177650	157177650	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	157177650	157177650	T	A	SNP	DNAJB6	ENST00000262177	human	ensembl	74_37	+1	known	missense	c.568	p.S190T	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB6	HGNC	ENSG00000105993				100	0	0	94	8	7.84314
PTPRN2	0	genome.wustl.edu	37	7	158109576	158109576	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	158109576	158109576	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.281	p.R94H	0.003	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				61	0	0	28	14	33.3333
ESYT2	0	genome.wustl.edu	37	7	158526907	158526907	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	158526907	158526907	C	T	SNP	ESYT2	ENST00000251527	human	ensembl	74_37	-1	known	silent	c.2673	p.A891	0.006	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	ESYT2	HGNC	ENSG00000117868				50	0	0	25	17	40.4762
MACC1	0	genome.wustl.edu	37	7	20197933	20197933	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	20197933	20197933	A	T	SNP	MACC1	ENST00000332878	human	ensembl	74_37	-1	known	missense	c.2051	p.I684N	0.000	superfamily_DEATH-like_dom	pfam_SH3_2,superfamily_DEATH-like_dom	-	no_errors	MACC1	HGNC	ENSG00000183742				47	0	0	40	14	25.9259
SP4	0	genome.wustl.edu	37	7	21469089	21469089	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	21469089	21469089	G	A	SNP	SP4	ENST00000222584	human	ensembl	74_37	+1	known	nonsense	c.306	p.W102*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP4	HGNC	ENSG00000105866				74	0	0	41	24	36.9231
RAPGEF5	0	genome.wustl.edu	37	7	22233548	22233548	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	22233548	22233548	G	A	SNP	RAPGEF5	ENST00000344041	human	ensembl	74_37	-1	known	missense	c.641	p.A214V	0.010	superfamily_Ras_GEF_dom	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF5	HGNC	ENSG00000136237				260	0	0	175	71	28.8618
GPNMB	0	genome.wustl.edu	37	7	23300296	23300296	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	23300296	23300296	A	G	SNP	GPNMB	ENST00000381990	human	ensembl	74_37	+1	known	missense	c.922	p.T308A	1.000	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235				162	0	0	111	56	33.5329
TTYH3	0	genome.wustl.edu	37	7	2687534	2687534	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	2687534	2687534	C	T	SNP	TTYH3	ENST00000403167	human	ensembl	74_37	+1	known	missense	c.55	p.R19C	0.000	NULL	pfam_Tweety	-	no_errors	TTYH3	HGNC	ENSG00000136295				31	0	0	14	13	48.1481
GHRHR	0	genome.wustl.edu	37	7	31013640	31013640	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	31013640	31013640	C	T	SNP	GHRHR	ENST00000326139	human	ensembl	74_37	+1	known	missense	c.638	p.T213I	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_GHRH_rcpt,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	GHRHR	HGNC	ENSG00000106128				122	0	0	66	54	45
RP9P	0	genome.wustl.edu	37	7	32956879	32956879	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	32956879	32956879	C	A	SNP	RP9P	ENST00000381639	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP9P	HGNC	ENSG00000205763				87	0	0	16	56	77.7778
DPY19L2P1	0	genome.wustl.edu	37	7	35131521	35131521	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	35131521	35131521	G	A	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212				61	0	0	59	7	10.6061
SDK1	0	genome.wustl.edu	37	7	4050642	4050642	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	4050642	4050642	A	G	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.2176	p.T726A	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				55	0	0	20	13	39.3939
GLI3	0	genome.wustl.edu	37	7	42005852	42005852	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	42005852	42005852	G	A	SNP	GLI3	ENST00000395925	human	ensembl	74_37	-1	known	missense	c.2819	p.P940L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI3	HGNC	ENSG00000106571				40	0	0	23	15	39.4737
SDK1	0	genome.wustl.edu	37	7	4247845	4247845	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	4247845	4247845	A	C	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.5329	p.S1777R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555				63	0	0	24	23	48.9362
HECW1	0	genome.wustl.edu	37	7	43503275	43503275	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	43503275	43503275	C	T	SNP	HECW1	ENST00000395891	human	ensembl	74_37	+1	known	nonsense	c.2668	p.R890*	1.000	NULL	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW1	HGNC	ENSG00000002746				86	0	0	53	24	31.1688
URGCP	0	genome.wustl.edu	37	7	43916923	43916923	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	43916923	43916923	A	G	SNP	URGCP	ENST00000453200	human	ensembl	74_37	-1	known	silent	c.2139	p.F713	1.000	superfamily_P-loop_NTPase,prints_GTP_binding_domain	superfamily_P-loop_NTPase,prints_GTP_binding_domain	-	no_errors	URGCP	HGNC	ENSG00000106608				76	0	0	39	23	37.0968
PGAM2	0	genome.wustl.edu	37	7	44105054	44105054	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	44105054	44105054	C	T	SNP	PGAM2	ENST00000297283	human	ensembl	74_37	-1	known	nonsense	c.75	p.W25*	1.000	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,tigrfam_Phosphogly_mut1	-	no_errors	PGAM2	HGNC	ENSG00000164708				84	0	0	45	33	42.3077
GCK	0	genome.wustl.edu	37	7	44186118	44186118	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	44186118	44186118	G	A	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	silent	c.966	p.S322	0.022	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				82	0	0	32	30	48.3871
GCK	0	genome.wustl.edu	37	7	44193002	44193002	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	44193002	44193002	G	A	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	missense	c.109	p.R37W	0.957	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633				240	0	0	129	78	37.6812
NPC1L1	0	genome.wustl.edu	37	7	44578499	44578499	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	44578499	44578499	C	T	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	silent	c.1497	p.T499	0.000	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520				80	0	0	47	35	42.6829
IGFBP1	0	genome.wustl.edu	37	7	45928424	45928424	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	45928424	45928424	G	T	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	missense	c.173	p.G58V	1.000	pfam_IGFBP-like,smart_IGFBP-like	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678				8	0	0	4	3	42.8571
TNRC18	0	genome.wustl.edu	37	7	5372608	5372608	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	5372608	5372608	C	T	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	missense	c.5792	p.R1931Q	1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				14	0	0	2	4	66.6667
EGFR	0	genome.wustl.edu	37	7	55238900	55238900	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	55238900	55238900	C	T	SNP	EGFR	ENST00000275493	human	ensembl	74_37	+1	known	missense	c.1913	p.T638M	0.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	EGFR	HGNC	ENSG00000146648				67	0	0	36	16	30.7692
ZNF716	0	genome.wustl.edu	37	7	57522222	57522222	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	57522222	57522222	C	A	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	nonsense	c.96	p.C32*	0.071	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				52	0	0	30	17	36.1702
RNF216	0	genome.wustl.edu	37	7	5781254	5781254	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	5781254	5781254	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	missense	c.394	p.G132S	0.019	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275				139	0	0	89	49	35.5072
DAGLB	0	genome.wustl.edu	37	7	6449620	6449620	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	6449620	6449620	C	T	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	missense	c.1867	p.E623K	0.985	NULL	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				69	0	0	52	38	42.2222
DAGLB	0	genome.wustl.edu	37	7	6456287	6456287	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	6456287	6456287	G	A	SNP	DAGLB	ENST00000297056	human	ensembl	74_37	-1	known	silent	c.1398	p.Y466	0.949	pfam_Lipase_3	pfam_Lipase_3	-	no_errors	DAGLB	HGNC	ENSG00000164535				116	0	0	74	49	39.8374
WBSCR17	0	genome.wustl.edu	37	7	70597962	70597962	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	70597962	70597962	C	A	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.174	p.P58	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				43	0	0	20	16	44.4444
TYW1B	0	genome.wustl.edu	37	7	72267523	72267523	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	72267523	72267523	G	A	SNP	TYW1B	ENST00000438904	human	ensembl	74_37	-1	known	silent	c.738	p.F246	0.650	NULL	pfam_Flavodoxin/NO_synth,pfscan_Flavodoxin/NO_synth,prints_Flavdoxin	-	no_errors	TYW1B	HGNC	ENSG00000254184				54	0	0	51	4	7.27273
STX1A	0	genome.wustl.edu	37	7	73118587	73118587	+	Splice_Site	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	73118587	73118587	C	T	SNP	STX1A	ENST00000222812	human	ensembl	74_37	-1	known	splice_site	c.358-1	e6-1	1.000	-	-	-	no_errors	STX1A	HGNC	ENSG00000106089				41	0	0	23	18	43.9024
CLDN3	0	genome.wustl.edu	37	7	73184217	73184217	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	73184217	73184217	C	G	SNP	CLDN3	ENST00000395145	human	ensembl	74_37	-1	known	missense	c.163	p.V55L	1.000	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin3	-	no_errors	CLDN3	HGNC	ENSG00000165215				60	0	0	38	24	38.7097
LIMK1	0	genome.wustl.edu	37	7	73535598	73535598	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	73535598	73535598	C	T	SNP	LIMK1	ENST00000336180	human	ensembl	74_37	+1	known	silent	c.1911	p.S637	0.988	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LIMK1	HGNC	ENSG00000106683				24	0	0	16	6	27.2727
POM121C	0	genome.wustl.edu	37	7	75070845	75070845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	75070845	75070845	G	A	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.656	p.P219L	0.392	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213				14	0	0	9	9	50
RHBDD2	0	genome.wustl.edu	37	7	75511493	75511493	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	75511493	75511493	G	A	SNP	RHBDD2	ENST00000006777	human	ensembl	74_37	+1	known	silent	c.525	p.S175	0.003	pfam_Peptidase_S54_rhomboid_dom	pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDD2	HGNC	ENSG00000005486				33	0	0	49	5	9.25926
GRM3	0	genome.wustl.edu	37	7	86469103	86469103	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	86469103	86469103	C	T	SNP	GRM3	ENST00000361669	human	ensembl	74_37	+1	known	missense	c.2273	p.T758M	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_2,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM3	HGNC	ENSG00000198822				74	0	0	46	29	38.6667
ABCB4	0	genome.wustl.edu	37	7	87092178	87092178	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	87092178	87092178	G	A	SNP	ABCB4	ENST00000265723	human	ensembl	74_37	-1	known	missense	c.182	p.T61I	0.994	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,pfam_Zeta_toxin_domain,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB4	HGNC	ENSG00000005471				38	0	0	37	28	43.0769
ABCB1	0	genome.wustl.edu	37	7	87150160	87150160	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	87150160	87150160	G	A	SNP	ABCB1	ENST00000265724	human	ensembl	74_37	-1	known	silent	c.2718	p.T906	0.995	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB1	HGNC	ENSG00000085563				64	0	0	42	25	37.3134
AKAP9	0	genome.wustl.edu	37	7	91708607	91708607	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	91708607	91708607	A	G	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.7196	p.Q2399R	1.000	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				98	0	0	51	34	40
AKAP9	0	genome.wustl.edu	37	7	91712892	91712892	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	91712892	91712892	C	T	SNP	AKAP9	ENST00000359028	human	ensembl	74_37	+1	known	missense	c.8605	p.H2869Y	0.092	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB	-	no_errors	AKAP9	HGNC	ENSG00000127914				45	0	0	29	21	42
ANKIB1	0	genome.wustl.edu	37	7	91936795	91936795	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	91936795	91936795	C	T	SNP	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	missense	c.311	p.A104V	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				94	0	0	62	34	35.4167
PEG10	0	genome.wustl.edu	37	7	94293052	94293052	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	94293052	94293052	C	T	SNP	PEG10	ENST00000482108	human	ensembl	74_37	+1	known	missense	c.184	p.R62C	0.035	NULL	pfam_Retrotrans_gag_dom,superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PEG10	HGNC	ENSG00000242265				18	0	0	14	4	22.2222
DLX5	0	genome.wustl.edu	37	7	96650268	96650268	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	96650268	96650268	G	A	SNP	DLX5	ENST00000222598	human	ensembl	74_37	-1	known	missense	c.650	p.S217L	1.000	NULL	pfam_Distal-less_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX5	HGNC	ENSG00000105880				64	0	0	28	23	45.098
LMTK2	0	genome.wustl.edu	37	7	97800879	97800879	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	97800879	97800879	C	T	SNP	LMTK2	ENST00000297293	human	ensembl	74_37	+1	known	silent	c.684	p.S228	0.002	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK2	HGNC	ENSG00000164715				103	0	0	52	27	34.1772
TECPR1	0	genome.wustl.edu	37	7	97850995	97850995	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	97850995	97850995	C	T	SNP	TECPR1	ENST00000379795	human	ensembl	74_37	-1	known	silent	c.3141	p.S1047	0.000	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR,smart_Peroxin/Ferlin	-	no_errors	TECPR1	HGNC	ENSG00000205356				71	0	0	32	17	34.6939
TRRAP	0	genome.wustl.edu	37	7	98490105	98490105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	98490105	98490105	G	A	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	1.000	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367				85	0	0	57	35	38.0435
SMURF1	0	genome.wustl.edu	37	7	98636091	98636091	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	98636091	98636091	G	A	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	silent	c.1686	p.F562	0.988	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				44	0	0	40	20	33.3333
SMURF1	0	genome.wustl.edu	37	7	98655069	98655069	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	98655069	98655069	A	C	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	missense	c.309	p.N103K	0.989	superfamily_C2_dom,smart_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742				67	0	0	38	33	46.4789
COPS6	0	genome.wustl.edu	37	7	99688088	99688088	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	99688088	99688088	C	T	SNP	COPS6	ENST00000303904	human	ensembl	74_37	+1	known	missense	c.401	p.S134L	1.000	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	pfam_JAB_MPN_dom,smart_JAB_MPN_dom	-	no_errors	COPS6	HGNC	ENSG00000168090				45	0	0	36	20	35.7143
RGS22	0	genome.wustl.edu	37	8	101051172	101051172	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	101051172	101051172	C	T	SNP	RGS22	ENST00000360863	human	ensembl	74_37	-1	known	missense	c.2153	p.C718Y	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	RGS22	HGNC	ENSG00000132554				34	0	0	47	11	18.9655
FBXO43	0	genome.wustl.edu	37	8	101146187	101146187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	101146187	101146187	A	G	SNP	FBXO43	ENST00000428847	human	ensembl	74_37	-1	known	missense	c.1970	p.L657P	1.000	pfam_Znf_C6HC,smart_Znf_C6HC	pfam_Znf_C6HC,superfamily_F-box_dom,smart_Znf_C6HC	-	no_errors	FBXO43	HGNC	ENSG00000156509				86	0	0	89	39	30.4688
GRHL2	0	genome.wustl.edu	37	8	102678915	102678915	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	102678915	102678915	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	missense	c.1862	p.T621M	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307				48	0	0	53	27	33.75
UBR5	0	genome.wustl.edu	37	8	103323682	103323682	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	103323682	103323682	G	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.2461	p.P821T	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				104	1	0.952381	88	46	34.3284
DCSTAMP	0	genome.wustl.edu	37	8	105360884	105360884	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	105360884	105360884	T	C	SNP	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	missense	c.104	p.V35A	0.003	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				118	0	0	115	43	27.2152
DCSTAMP	0	genome.wustl.edu	37	8	105368454	105368454	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	105368454	105368454	C	T	SNP	DCSTAMP	ENST00000518051	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				21	0	0	27	7	20.5882
LRP12	0	genome.wustl.edu	37	8	105509257	105509257	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	105509257	105509257	A	G	SNP	LRP12	ENST00000424843	human	ensembl	74_37	-1	known	missense	c.1466	p.L489P	1.000	NULL	pfam_CUB_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP12	HGNC	ENSG00000147650				75	0	0	71	18	20.2247
SOX7	0	genome.wustl.edu	37	8	10583281	10583281	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	10583281	10583281	C	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	silent	c.1290	p.T430	0.030	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				46	0	0	58	13	18.3099
SOX7	0	genome.wustl.edu	37	8	10690428	10690428	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	10690428	10690428	C	A	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	nonsense	c.196	p.G66*	1.000	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056				32	0	0	17	7	29.1667
PKHD1L1	0	genome.wustl.edu	37	8	110408347	110408347	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	110408347	110408347	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.903	p.P301	0.993	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038				14	0	0	24	5	17.2414
KCNV1	0	genome.wustl.edu	37	8	110980553	110980553	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	110980553	110980553	G	A	SNP	KCNV1	ENST00000297404	human	ensembl	74_37	-1	known	missense	c.1267	p.P423S	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794				80	0	0	68	30	30.6122
CSMD3	0	genome.wustl.edu	37	8	113318290	113318290	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	113318290	113318290	C	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.8017	p.V2673I	0.666	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				124	0	0	154	69	30.9417
EXT1	0	genome.wustl.edu	37	8	118830694	118830694	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	118830694	118830694	C	T	SNP	EXT1	ENST00000378204	human	ensembl	74_37	-1	known	missense	c.1612	p.V538I	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXT1	HGNC	ENSG00000182197				142	0	0	161	48	22.9665
FAM86B1	0	genome.wustl.edu	37	8	12042911	12042911	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	12042911	12042911	G	A	SNP	FAM86B1	ENST00000448228	human	ensembl	74_37	-1	known	missense	c.764	p.T255M	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	FAM86B1	HGNC	ENSG00000186523				134	0	0	85	38	30.8943
ENPP2	0	genome.wustl.edu	37	8	120612982	120612982	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	120612982	120612982	A	G	SNP	ENPP2	ENST00000259486	human	ensembl	74_37	-1	known	missense	c.908	p.V303A	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP2	HGNC	ENSG00000136960				79	0	0	74	20	21.2766
DEPTOR	0	genome.wustl.edu	37	8	121015280	121015280	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	121015280	121015280	C	T	SNP	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	silent	c.855	p.G285	1.000	NULL	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				16	0	0	17	6	26.087
ATAD2	0	genome.wustl.edu	37	8	124382182	124382182	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	124382182	124382182	A	G	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	silent	c.810	p.D270	0.909	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				25	0	0	28	16	36.3636
FBXO32	0	genome.wustl.edu	37	8	124518695	124518695	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	124518695	124518695	G	A	SNP	FBXO32	ENST00000517956	human	ensembl	74_37	-1	known	silent	c.771	p.H257	0.058	superfamily_F-box_dom	superfamily_F-box_dom	-	no_errors	FBXO32	HGNC	ENSG00000156804				59	0	0	57	19	25
MTSS1	0	genome.wustl.edu	37	8	125565529	125565529	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	125565529	125565529	T	C	SNP	MTSS1	ENST00000518547	human	ensembl	74_37	-1	known	missense	c.1972	p.T658A	0.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873				73	0	0	99	28	22.0472
LONRF1	0	genome.wustl.edu	37	8	12594270	12594270	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	12594270	12594270	T	A	SNP	LONRF1	ENST00000398246	human	ensembl	74_37	-1	known	missense	c.1391	p.Y464F	0.571	NULL	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_TPR_repeat,smart_Znf_RING,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF1	HGNC	ENSG00000154359				98	0	0	102	34	25
KIAA0196	0	genome.wustl.edu	37	8	126044624	126044624	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	126044624	126044624	C	T	SNP	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	missense	c.3194	p.R1065Q	0.994	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961				89	0	0	79	21	21
MYC	0	genome.wustl.edu	37	8	128750777	128750777	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	128750777	128750777	G	A	SNP	MYC	ENST00000377970	human	ensembl	74_37	+1	known	missense	c.314	p.G105D	1.000	pfam_Tscrpt_reg_Myc_N	pfam_Tscrpt_reg_Myc_N,pfam_Myc-LZ,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYC	HGNC	ENSG00000136997				38	0	0	33	12	26.6667
ADCY8	0	genome.wustl.edu	37	8	131792669	131792669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	131792669	131792669	C	A	SNP	ADCY8	ENST00000286355	human	ensembl	74_37	-1	known	missense	c.3723	p.Q1241H	0.723	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY8	HGNC	ENSG00000155897				106	0	0	97	30	23.622
DLC1	0	genome.wustl.edu	37	8	13357421	13357421	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	13357421	13357421	G	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	missense	c.160	p.R54C	0.998	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741				229	0	0	234	70	23.0263
ZFAT	0	genome.wustl.edu	37	8	135521887	135521887	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	135521887	135521887	G	A	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.3467	p.P1156L	0.992	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827				87	0	0	110	36	24.6575
COL22A1	0	genome.wustl.edu	37	8	139703108	139703108	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	139703108	139703108	C	T	SNP	COL22A1	ENST00000303045	human	ensembl	74_37	-1	known	missense	c.2764	p.G922R	1.000	NULL	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL22A1	HGNC	ENSG00000169436				29	0	0	27	12	30.7692
AGO2	0	genome.wustl.edu	37	8	141561492	141561492	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	141561492	141561492	C	T	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	missense	c.1313	p.R438Q	1.000	NULL	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908				121	1	0.819672	128	38	22.8916
PTK2	0	genome.wustl.edu	37	8	141889676	141889676	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	141889676	141889676	G	A	SNP	PTK2	ENST00000395218	human	ensembl	74_37	-1	known	missense	c.256	p.R86C	1.000	smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398				273	0	0	327	111	25.3425
DENND3	0	genome.wustl.edu	37	8	142178549	142178549	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	142178549	142178549	A	G	SNP	DENND3	ENST00000262585	human	ensembl	74_37	+1	known	missense	c.1960	p.M654V	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_WD40_repeat,pfam_uDENN_dom,superfamily_WD40_repeat_dom,smart_DENN_dom,smart_dDENN_dom,smart_WD40_repeat,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_WD40_repeat_dom	-	no_errors	DENND3	HGNC	ENSG00000105339				79	0	0	90	28	23.7288
SLC45A4	0	genome.wustl.edu	37	8	142222398	142222398	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	142222398	142222398	C	T	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	silent	c.2199	p.P733	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				32	0	0	31	9	22.5
SLC45A4	0	genome.wustl.edu	37	8	142222470	142222470	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	142222470	142222470	C	T	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	silent	c.2127	p.T709	0.224	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				58	0	0	65	16	19.7531
JRK	0	genome.wustl.edu	37	8	143745980	143745980	+	RNA	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	143745980	143745980	C	T	SNP	JRK	ENST00000422119	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.194	-	-	-	no_errors	JRK	HGNC	ENSG00000234616				11	0	0	14	7	33.3333
CYP11B2	0	genome.wustl.edu	37	8	143996616	143996616	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	143996616	143996616	A	T	SNP	CYP11B2	ENST00000323110	human	ensembl	74_37	-1	known	missense	c.441	p.D147E	0.650	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142				37	0	0	38	4	9.52381
TOP1MT	0	genome.wustl.edu	37	8	144397975	144397975	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144397975	144397975	T	C	SNP	TOP1MT	ENST00000329245	human	ensembl	74_37	-1	known	missense	c.1475	p.E492G	0.991	pfam_TopoI_cat_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk	pfam_TopoI_DNA-bd_euk,pfam_TopoI_cat_euk,superfamily_TopoI_DNA-bd_euk,superfamily_DNA_brk_join_enz,smart_TopoI_euk,prints_TopoI	-	no_errors	TOP1MT	HGNC	ENSG00000184428				54	0	0	47	23	32.8571
RHPN1	0	genome.wustl.edu	37	8	144463997	144463997	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144463997	144463997	C	T	SNP	RHPN1	ENST00000289013	human	ensembl	74_37	+1	known	silent	c.1656	p.G552	0.001	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_BRO1_dom,pfam_HR1_rho-bd,pfam_PDZ,superfamily_PDZ,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom,pfscan_PDZ	-	no_errors	RHPN1	HGNC	ENSG00000158106				18	0	0	32	9	21.9512
SCRIB	0	genome.wustl.edu	37	8	144885638	144885638	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144885638	144885638	G	A	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.3518	p.A1173V	0.998	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				18	0	0	22	5	18.5185
EPPK1	0	genome.wustl.edu	37	8	144945127	144945127	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144945127	144945127	C	T	SNP	EPPK1	ENST00000525985	human	ensembl	74_37	-1	known	silent	c.2295	p.K765	1.000	smart_Plectin_repeat	pfam_Plectin_repeat,smart_Plectin_repeat	-	no_errors	EPPK1	HGNC	ENSG00000227184				134	0	0	147	37	20.1087
PLEC	0	genome.wustl.edu	37	8	144991738	144991738	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144991738	144991738	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	missense	c.12662	p.S4221L	0.003	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				102	0	0	71	36	33.6449
PLEC	0	genome.wustl.edu	37	8	144998487	144998487	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144998487	144998487	C	T	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.6021	p.A2007	0.062	NULL	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209				26	0	0	23	8	25.8065
PARP10	0	genome.wustl.edu	37	8	145051982	145051982	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145051982	145051982	C	T	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	silent	c.2748	p.K916	0.998	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				18	0	0	18	8	30.7692
PARP10	0	genome.wustl.edu	37	8	145059956	145059956	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145059956	145059956	G	A	SNP	PARP10	ENST00000313028	human	ensembl	74_37	-1	known	silent	c.369	p.C123	0.345	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP10	HGNC	ENSG00000178685				69	0	0	46	13	22.0339
OPLAH	0	genome.wustl.edu	37	8	145113475	145113475	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145113475	145113475	C	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	missense	c.707	p.C236F	1.000	pfam_Hydantoinase_A	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814				51	0	0	35	12	25.5319
CPSF1	0	genome.wustl.edu	37	8	145623706	145623706	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145623706	145623706	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1880	p.R627H	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				100	0	0	90	33	26.8293
SLC39A4	0	genome.wustl.edu	37	8	145640738	145640738	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145640738	145640738	G	A	SNP	SLC39A4	ENST00000301305	human	ensembl	74_37	-1	known	silent	c.540	p.G180	0.001	NULL	pfam_ZIP	-	no_errors	SLC39A4	HGNC	ENSG00000147804				15	0	0	17	3	15
MFSD3	0	genome.wustl.edu	37	8	145735316	145735316	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145735316	145735316	C	A	SNP	MFSD3	ENST00000301327	human	ensembl	74_37	+1	known	silent	c.600	p.P200	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	MFSD3	HGNC	ENSG00000167700				14	0	0	12	4	25
ARHGAP39	0	genome.wustl.edu	37	8	145757727	145757727	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	145757727	145757727	C	T	SNP	ARHGAP39	ENST00000377307	human	ensembl	74_37	-1	known	nonsense	c.2942	p.W981*	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_MyTH4_dom,superfamily_Rho_GTPase_activation_prot,superfamily_WW_dom,smart_WW_dom,smart_MyTH4_dom,smart_RhoGAP_dom,pfscan_MyTH4_dom,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP39	HGNC	ENSG00000147799				36	0	0	44	19	30.1587
MTMR7	0	genome.wustl.edu	37	8	17198880	17198880	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	17198880	17198880	G	A	SNP	MTMR7	ENST00000180173	human	ensembl	74_37	-1	known	missense	c.724	p.R242W	0.984	pfam_Myotubularin-like_Pase_dom	pfam_Myotubularin-like_Pase_dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR7	HGNC	ENSG00000003987				51	0	0	51	12	19.0476
PCM1	0	genome.wustl.edu	37	8	17810569	17810569	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	17810569	17810569	C	T	SNP	PCM1	ENST00000325083	human	ensembl	74_37	+1	known	missense	c.1162	p.R388C	0.997	NULL	NULL	-	no_errors	PCM1	HGNC	ENSG00000078674				20	0	0	18	5	21.7391
ARHGEF10	0	genome.wustl.edu	37	8	1876637	1876637	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	1876637	1876637	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.2817	p.S939	0.054	superfamily_WD40_repeat_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				155	0	0	163	63	27.8761
ARHGEF10	0	genome.wustl.edu	37	8	1900959	1900959	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	1900959	1900959	G	A	SNP	ARHGEF10	ENST00000398564	human	ensembl	74_37	+1	known	silent	c.3561	p.P1187	0.255	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_WD40_repeat_dom,smart_DH-domain,pfscan_DH-domain	-	no_errors	ARHGEF10	HGNC	ENSG00000104728				70	0	0	83	28	25.2252
SLC18A1	0	genome.wustl.edu	37	8	20036930	20036930	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	20036930	20036930	C	T	SNP	SLC18A1	ENST00000276373	human	ensembl	74_37	-1	known	missense	c.190	p.G64S	0.000	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Multidrug-R	-	no_errors	SLC18A1	HGNC	ENSG00000036565				73	0	0	71	21	22.8261
MYOM2	0	genome.wustl.edu	37	8	2017398	2017398	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	2017398	2017398	G	A	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	missense	c.655	p.A219T	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448				30	0	0	24	18	42.8571
HR	0	genome.wustl.edu	37	8	21977305	21977305	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	21977305	21977305	C	T	SNP	HR	ENST00000381418	human	ensembl	74_37	-1	known	missense	c.2945	p.R982H	0.022	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453				60	0	0	45	18	28.5714
LGI3	0	genome.wustl.edu	37	8	22006340	22006340	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22006340	22006340	C	T	SNP	LGI3	ENST00000306317	human	ensembl	74_37	-1	known	missense	c.980	p.R327H	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481				47	0	0	33	16	32.6531
PHYHIP	0	genome.wustl.edu	37	8	22079224	22079224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22079224	22079224	C	T	SNP	PHYHIP	ENST00000454243	human	ensembl	74_37	-1	known	missense	c.635	p.R212H	1.000	NULL	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	PHYHIP	HGNC	ENSG00000168490				25	0	0	30	4	11.7647
PIWIL2	0	genome.wustl.edu	37	8	22175773	22175773	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22175773	22175773	A	T	SNP	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	missense	c.2388	p.L796F	0.999	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181				73	0	0	91	5	5.20833
SORBS3	0	genome.wustl.edu	37	8	22424653	22424653	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22424653	22424653	G	A	SNP	SORBS3	ENST00000240123	human	ensembl	74_37	+1	known	missense	c.1270	p.G424S	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896				92	0	0	77	35	31.25
SORBS3	0	genome.wustl.edu	37	8	22428603	22428603	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22428603	22428603	C	T	SNP	SORBS3	ENST00000240123	human	ensembl	74_37	+1	known	missense	c.1612	p.R538C	0.006	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS3	HGNC	ENSG00000120896				57	0	0	56	24	30
EGR3	0	genome.wustl.edu	37	8	22548121	22548121	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22548121	22548121	C	T	SNP	EGR3	ENST00000317216	human	ensembl	74_37	-1	known	silent	c.1029	p.A343	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR3	HGNC	ENSG00000179388				132	0	0	109	36	24.8276
RHOBTB2	0	genome.wustl.edu	37	8	22864803	22864803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22864803	22864803	G	A	SNP	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	missense	c.1045	p.E349K	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				63	0	0	59	22	27.1605
CHMP7	0	genome.wustl.edu	37	8	23106740	23106740	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	23106740	23106740	G	A	SNP	CHMP7	ENST00000313219	human	ensembl	74_37	+1	known	missense	c.317	p.R106Q	1.000	NULL	pfam_Snf7	-	no_errors	CHMP7	HGNC	ENSG00000147457				65	0	0	83	30	26.5487
LOXL2	0	genome.wustl.edu	37	8	23159567	23159567	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	23159567	23159567	G	A	SNP	LOXL2	ENST00000389131	human	ensembl	74_37	-1	known	silent	c.2106	p.D702	0.981	pfam_Lysyl_oxidase,prints_Lysyl_oxidase	pfam_Lysyl_oxidase,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_Lysyl_oxidase,prints_SRCR	-	no_errors	LOXL2	HGNC	ENSG00000134013				49	0	0	57	27	32.1429
PPP2R2A	0	genome.wustl.edu	37	8	26218507	26218507	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	26218507	26218507	T	C	SNP	PPP2R2A	ENST00000380737	human	ensembl	74_37	+1	known	silent	c.477	p.P159	1.000	superfamily_WD40_repeat_dom,pirsf_PP2A_PR55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_PP2A_PR55,prints_PP2A_PR55	-	no_errors	PPP2R2A	HGNC	ENSG00000221914				82	0	0	97	27	21.7742
PTK2B	0	genome.wustl.edu	37	8	27301752	27301752	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	27301752	27301752	G	A	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	silent	c.2178	p.P726	0.968	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				68	0	0	62	25	28.7356
CSMD1	0	genome.wustl.edu	37	8	3081363	3081363	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	3081363	3081363	G	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.4375	p.P1459T	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				36	0	0	46	19	29.2308
CSMD1	0	genome.wustl.edu	37	8	3141845	3141845	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	3141845	3141845	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3977	p.T1326M	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				43	0	0	37	10	21.2766
CSMD1	0	genome.wustl.edu	37	8	3224649	3224649	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	3224649	3224649	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3023	p.T1008M	0.821	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				21	0	0	25	15	37.5
KCNU1	0	genome.wustl.edu	37	8	36691163	36691163	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	36691163	36691163	C	G	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.1198	p.L400V	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				49	0	0	49	7	12.5
KCNU1	0	genome.wustl.edu	37	8	36793082	36793082	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	36793082	36793082	C	A	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.3094	p.L1032I	0.101	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				100	0	0	99	48	32.6531
BRF2	0	genome.wustl.edu	37	8	37702233	37702233	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	37702233	37702233	T	C	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	silent	c.1035	p.L345	0.000	NULL	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				45	0	0	38	19	33.3333
BRF2	0	genome.wustl.edu	37	8	37702549	37702549	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	37702549	37702549	G	A	SNP	BRF2	ENST00000220659	human	ensembl	74_37	-1	known	missense	c.719	p.A240V	0.000	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221				47	0	0	32	15	31.9149
RAB11FIP1	0	genome.wustl.edu	37	8	37729779	37729779	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	37729779	37729779	G	A	SNP	RAB11FIP1	ENST00000330843	human	ensembl	74_37	-1	known	silent	c.2541	p.N847	0.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP1	HGNC	ENSG00000156675				63	0	0	79	29	26.8519
CSMD1	0	genome.wustl.edu	37	8	3855509	3855509	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	3855509	3855509	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.734	p.T245I	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				18	0	0	11	4	26.6667
ANK1	0	genome.wustl.edu	37	8	41519420	41519420	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	41519420	41519420	C	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.5518	p.A1840T	0.002	NULL	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534				68	0	0	74	22	22.9167
KAT6A	0	genome.wustl.edu	37	8	41792210	41792210	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	41792210	41792210	A	T	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.3528	p.S1176R	0.995	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				131	0	0	126	58	31.5217
KAT6A	0	genome.wustl.edu	37	8	41906068	41906068	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	41906068	41906068	A	C	SNP	KAT6A	ENST00000265713	human	ensembl	74_37	-1	known	missense	c.428	p.F143C	1.000	smart_Histone_H1/H5_H15	pfam_MOZ_SAS,pfam_Znf_PHD-finger,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6A	HGNC	ENSG00000083168				47	0	0	39	25	39.0625
SLC20A2	0	genome.wustl.edu	37	8	42294547	42294547	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	42294547	42294547	C	T	SNP	SLC20A2	ENST00000342228	human	ensembl	74_37	-1	known	missense	c.1483	p.A495T	1.000	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A2	HGNC	ENSG00000168575				42	0	0	56	13	18.8406
RNF170	0	genome.wustl.edu	37	8	42716955	42716955	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	42716955	42716955	T	C	SNP	RNF170	ENST00000527424	human	ensembl	74_37	-1	known	missense	c.440	p.Q147R	1.000	NULL	pfam_DUF1232,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF170	HGNC	ENSG00000120925				50	0	0	52	26	33.3333
PRKDC	0	genome.wustl.edu	37	8	48776075	48776075	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	48776075	48776075	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.5632	p.V1878M	0.993	pfam_NUC194,superfamily_ARM-type_fold	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				116	0	0	121	45	27.1084
PXDNL	0	genome.wustl.edu	37	8	52321350	52321350	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	52321350	52321350	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2834	p.A945V	0.373	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				28	0	0	17	4	19.0476
FAM110B	0	genome.wustl.edu	37	8	59059293	59059293	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	59059293	59059293	G	A	SNP	FAM110B	ENST00000361488	human	ensembl	74_37	+1	known	silent	c.504	p.T168	0.938	NULL	NULL	-	no_errors	FAM110B	HGNC	ENSG00000169122				24	0	0	28	14	33.3333
CHD7	0	genome.wustl.edu	37	8	61734586	61734586	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	61734586	61734586	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	nonsense	c.2839	p.R947*	1.000	superfamily_P-loop_NTPase,pfscan_Chromo_domain/shadow	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				24	0	0	43	9	17.3077
CHD7	0	genome.wustl.edu	37	8	61769311	61769311	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	61769311	61769311	G	A	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.7472	p.R2491H	0.997	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				154	0	0	141	52	26.943
CHD7	0	genome.wustl.edu	37	8	61777841	61777841	+	Silent	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	61777841	61777841	A	C	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.8343	p.T2781	0.990	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				21	0	0	12	2	14.2857
YTHDF3	0	genome.wustl.edu	37	8	64098806	64098806	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	64098806	64098806	T	C	SNP	YTHDF3	ENST00000539294	human	ensembl	74_37	+1	known	silent	c.234	p.A78	0.963	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDF3	HGNC	ENSG00000185728				28	0	0	39	13	25
BHLHE22	0	genome.wustl.edu	37	8	65493427	65493427	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	65493427	65493427	C	T	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.80	p.T27I	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				10	0	0	11	3	21.4286
BHLHE22	0	genome.wustl.edu	37	8	65494354	65494354	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	65494354	65494354	C	T	SNP	BHLHE22	ENST00000321870	human	ensembl	74_37	+1	known	missense	c.1007	p.P336L	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE22	HGNC	ENSG00000180828				13	0	0	9	6	40
DNAJC5B	0	genome.wustl.edu	37	8	66989096	66989096	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	66989096	66989096	C	A	SNP	DNAJC5B	ENST00000276570	human	ensembl	74_37	+1	known	missense	c.321	p.S107R	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5B	HGNC	ENSG00000147570				84	0	0	83	31	27.193
PRDM14	0	genome.wustl.edu	37	8	70981995	70981995	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	70981995	70981995	G	A	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	missense	c.101	p.P34L	0.003	NULL	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596				15	0	0	23	3	11.5385
NCOA2	0	genome.wustl.edu	37	8	71074996	71074996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	71074996	71074996	G	A	SNP	NCOA2	ENST00000452400	human	ensembl	74_37	-1	known	missense	c.926	p.A309V	0.219	superfamily_PAS,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA2	HGNC	ENSG00000140396				112	0	0	108	42	28
TRAM1	0	genome.wustl.edu	37	8	71495950	71495950	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	71495950	71495950	G	A	SNP	TRAM1	ENST00000262213	human	ensembl	74_37	-1	known	silent	c.825	p.G275	0.999	pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	pfam_TRAM1,pfam_TLC-dom,smart_TLC-dom,pirsf_Translocation_assoc_membrane,pfscan_TLC-dom	-	no_errors	TRAM1	HGNC	ENSG00000067167				118	0	0	139	39	21.9101
EYA1	0	genome.wustl.edu	37	8	72127878	72127878	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	72127878	72127878	G	A	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	silent	c.1446	p.A482	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313				92	0	0	84	27	24.3243
TRPA1	0	genome.wustl.edu	37	8	72964968	72964968	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	72964968	72964968	G	A	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	silent	c.1677	p.G559	0.990	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321				106	0	0	106	33	23.741
ZFHX4	0	genome.wustl.edu	37	8	77767850	77767850	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	77767850	77767850	G	A	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8693	p.R2898H	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				38	0	0	54	18	25
SGK223	0	genome.wustl.edu	37	8	8235431	8235431	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	8235431	8235431	C	T	SNP	SGK223	ENST00000330777	human	ensembl	74_37	-1	known	missense	c.488	p.G163D	0.941	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK223	Uniprot_gn	ENSG00000182319				108	0	0	112	32	22.2222
RALYL	0	genome.wustl.edu	37	8	85799864	85799864	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	85799864	85799864	G	C	SNP	RALYL	ENST00000521268	human	ensembl	74_37	+1	known	missense	c.711	p.E237D	1.000	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALYL	HGNC	ENSG00000184672				87	0	0	82	34	29.3103
LRRCC1	0	genome.wustl.edu	37	8	86021867	86021867	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	86021867	86021867	G	A	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	missense	c.142	p.V48I	0.996	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739				23	0	0	21	6	22.2222
DCAF4L2	0	genome.wustl.edu	37	8	88886149	88886149	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	88886149	88886149	C	A	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	missense	c.51	p.K17N	0.019	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566				63	0	0	51	18	26.087
OSGIN2	0	genome.wustl.edu	37	8	90937019	90937019	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	90937019	90937019	G	A	SNP	OSGIN2	ENST00000451899	human	ensembl	74_37	+1	known	silent	c.909	p.A303	0.994	NULL	NULL	-	no_errors	OSGIN2	HGNC	ENSG00000164823				62	0	0	72	22	23.4043
FAM92A1	0	genome.wustl.edu	37	8	94713478	94713478	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	94713478	94713478	C	T	SNP	FAM92A1	ENST00000518322	human	ensembl	74_37	+1	known	missense	c.53	p.T18I	1.000	pfam_FAM92	pfam_FAM92	-	no_errors	FAM92A1	HGNC	ENSG00000188343				22	0	0	14	9	39.1304
INTS8	0	genome.wustl.edu	37	8	95837126	95837126	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	95837126	95837126	G	A	SNP	INTS8	ENST00000523731	human	ensembl	74_37	+1	known	missense	c.136	p.A46T	0.993	NULL	NULL	-	no_errors	INTS8	HGNC	ENSG00000164941				50	0	0	49	14	22.2222
TNKS	0	genome.wustl.edu	37	8	9627729	9627729	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	9627729	9627729	A	G	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.3854	p.N1285S	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				50	0	0	53	15	22.0588
TNKS	0	genome.wustl.edu	37	8	9627753	9627753	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	9627753	9627753	T	C	SNP	TNKS	ENST00000310430	human	ensembl	74_37	+1	known	missense	c.3878	p.V1293A	1.000	pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS	HGNC	ENSG00000173273				33	0	0	43	10	18.8679
SDC2	0	genome.wustl.edu	37	8	97614732	97614732	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	97614732	97614732	G	T	SNP	SDC2	ENST00000302190	human	ensembl	74_37	+1	known	missense	c.282	p.Q94H	0.973	pfam_Syndecan/Neurexin_dom	pfam_Syndecan/Neurexin_dom,smart_Neurexin-like	-	no_errors	SDC2	HGNC	ENSG00000169439				85	0	0	87	33	27.5
OR13C4	0	genome.wustl.edu	37	9	107289041	107289041	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	107289041	107289041	A	G	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	silent	c.450	p.L150	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136				113	0	0	67	53	44.1667
ABCA1	0	genome.wustl.edu	37	9	107586833	107586833	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	107586833	107586833	A	G	SNP	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	missense	c.2569	p.Y857H	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				57	0	0	25	16	39.0244
ZNF462	0	genome.wustl.edu	37	9	109687846	109687846	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	109687846	109687846	A	G	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.1653	p.P551	0.358	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				19	0	0	16	8	33.3333
ZNF462	0	genome.wustl.edu	37	9	109689202	109689202	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	109689202	109689202	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.3009	p.T1003	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				133	0	0	69	73	51.4085
ZNF462	0	genome.wustl.edu	37	9	109746636	109746636	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	109746636	109746636	C	T	SNP	ZNF462	ENST00000457913	human	ensembl	74_37	+1	known	silent	c.7182	p.Y2394	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143				87	0	0	53	23	30.2632
ACTL7A	0	genome.wustl.edu	37	9	111625268	111625268	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	111625268	111625268	C	T	SNP	ACTL7A	ENST00000333999	human	ensembl	74_37	+1	known	silent	c.666	p.G222	0.118	pfam_Actin-related,smart_Actin-related,prints_Actin-related	pfam_Actin-related,smart_Actin-related,prints_Actin-related	-	no_errors	ACTL7A	HGNC	ENSG00000187003				61	0	0	34	32	48.4848
EPB41L4B	0	genome.wustl.edu	37	9	112017946	112017946	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	112017946	112017946	C	T	SNP	EPB41L4B	ENST00000374566	human	ensembl	74_37	-1	known	silent	c.1014	p.E338	1.000	pfam_FERM_PH-like_C,pfscan_FERM_domain	pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4B	HGNC	ENSG00000095203				110	0	0	72	36	33.3333
PALM2-AKAP2	0	genome.wustl.edu	37	9	112899061	112899061	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	112899061	112899061	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.1237	p.R413C	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				63	0	0	36	25	40.9836
PALM2-AKAP2	0	genome.wustl.edu	37	9	112899946	112899946	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	112899946	112899946	G	A	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	missense	c.2122	p.E708K	1.000	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				119	0	0	70	48	40.678
PALM2-AKAP2	0	genome.wustl.edu	37	9	112900545	112900545	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	112900545	112900545	C	T	SNP	PALM2-AKAP2	ENST00000374530	human	ensembl	74_37	+1	known	silent	c.2721	p.P907	0.015	NULL	pfam_Paralemmin,pfam_RII_binding_1	-	no_errors	PALM2-AKAP2	HGNC	ENSG00000157654				31	0	0	19	13	40.625
SVEP1	0	genome.wustl.edu	37	9	113341715	113341715	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	113341715	113341715	C	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	missense	c.109	p.E37K	0.926	NULL	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124				12	0	0	10	3	23.0769
C9orf84	0	genome.wustl.edu	37	9	114490105	114490105	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	114490105	114490105	C	T	SNP	C9orf84	ENST00000318737	human	ensembl	74_37	-1	known	missense	c.1450	p.D484N	0.016	NULL	superfamily_RuvA_2-like	-	no_errors	C9orf84	HGNC	ENSG00000165181				76	0	0	62	40	39.2157
SUSD1	0	genome.wustl.edu	37	9	114886564	114886564	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	114886564	114886564	A	G	SNP	SUSD1	ENST00000374264	human	ensembl	74_37	-1	known	missense	c.859	p.W287R	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_EGF-like_Ca-bd_dom,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SUSD1	HGNC	ENSG00000106868				155	0	0	105	58	35.5828
ALAD	0	genome.wustl.edu	37	9	116152751	116152751	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	116152751	116152751	C	T	SNP	ALAD	ENST00000409155	human	ensembl	74_37	-1	known	silent	c.504	p.S168	0.396	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	pfam_Porphobilinogen_synth,pirsf_Porphobilinogen_synth,prints_Porphobilinogen_synth	-	no_errors	ALAD	HGNC	ENSG00000148218				52	0	0	33	14	29.7872
ZNF618	0	genome.wustl.edu	37	9	116770651	116770651	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	116770651	116770651	A	G	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.668	p.N223S	1.000	NULL	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				74	0	0	31	24	43.6364
ZNF618	0	genome.wustl.edu	37	9	116811914	116811914	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	116811914	116811914	G	A	SNP	ZNF618	ENST00000374126	human	ensembl	74_37	+1	known	missense	c.2332	p.A778T	1.000	superfamily_RNaseH-like_dom	superfamily_RNaseH-like_dom,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF618	HGNC	ENSG00000157657				98	0	0	49	29	37.1795
COL27A1	0	genome.wustl.edu	37	9	116930508	116930508	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	116930508	116930508	G	A	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.673	p.A225T	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				91	0	0	49	21	30
COL27A1	0	genome.wustl.edu	37	9	117068923	117068923	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	117068923	117068923	C	T	SNP	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	missense	c.5062	p.R1688W	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739				43	0	0	30	25	45.4545
CDK5RAP2	0	genome.wustl.edu	37	9	123199642	123199642	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	123199642	123199642	C	T	SNP	CDK5RAP2	ENST00000349780	human	ensembl	74_37	-1	known	missense	c.3886	p.E1296K	0.947	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861				50	0	0	28	13	31.7073
DAB2IP	0	genome.wustl.edu	37	9	124461682	124461682	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	124461682	124461682	C	T	SNP	DAB2IP	ENST00000408936	human	ensembl	74_37	+1	known	missense	c.307	p.R103C	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	DAB2IP	HGNC	ENSG00000136848				23	0	0	12	8	40
OR1N1	0	genome.wustl.edu	37	9	125289508	125289508	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	125289508	125289508	T	G	SNP	OR1N1	ENST00000304880	human	ensembl	74_37	-1	known	missense	c.65	p.Q22P	0.098	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1N1	HGNC	ENSG00000171505				45	0	0	29	14	32.5581
MAPKAP1	0	genome.wustl.edu	37	9	128206809	128206809	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	128206809	128206809	C	T	SNP	MAPKAP1	ENST00000265960	human	ensembl	74_37	-1	known	missense	c.1414	p.A472T	0.999	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487				109	1	0.909091	62	35	36.0825
ZBTB34	0	genome.wustl.edu	37	9	129642094	129642094	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	129642094	129642094	A	C	SNP	ZBTB34	ENST00000319119	human	ensembl	74_37	+1	known	missense	c.416	p.D139A	1.000	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB34	HGNC	ENSG00000177125				92	0	0	63	31	32.9787
RALGPS1	0	genome.wustl.edu	37	9	129931041	129931041	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	129931041	129931041	G	A	SNP	RALGPS1	ENST00000259351	human	ensembl	74_37	+1	known	missense	c.832	p.D278N	1.000	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_RasGRF_CDC25	-	no_errors	RALGPS1	HGNC	ENSG00000136828				121	0	0	75	43	36.4407
CDK9	0	genome.wustl.edu	37	9	130551706	130551706	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	130551706	130551706	A	G	SNP	CDK9	ENST00000373265	human	ensembl	74_37	+1	known	missense	c.1354	p.M452V	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK9	HGNC	ENSG00000136807				119	0	0	58	29	33.3333
CERCAM	0	genome.wustl.edu	37	9	131198171	131198171	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	131198171	131198171	G	A	SNP	CERCAM	ENST00000372838	human	ensembl	74_37	+1	known	missense	c.1775	p.R592Q	0.010	NULL	pfam_Glyco_trans_25	-	no_errors	CERCAM	HGNC	ENSG00000167123				20	0	0	10	6	37.5
NUP188	0	genome.wustl.edu	37	9	131731771	131731771	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	131731771	131731771	C	T	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.890	p.A297V	0.997	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319				60	0	0	54	20	27.027
SH3GLB2	0	genome.wustl.edu	37	9	131771452	131771452	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	131771452	131771452	C	T	SNP	SH3GLB2	ENST00000372554	human	ensembl	74_37	-1	known	missense	c.1040	p.R347H	1.000	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341				29	0	0	11	13	54.1667
NTMT1	0	genome.wustl.edu	37	9	132396542	132396542	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	132396542	132396542	G	A	SNP	NTMT1	ENST00000372480	human	ensembl	74_37	+1	known	silent	c.372	p.P124	0.006	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	pfam_DUF858_MeTrfase_lik,pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_O_MeTrfase_2,pirsf_DUF858_MeTrfase_lik	-	no_errors	NTMT1	HGNC	ENSG00000148335				108	0	0	61	38	38.3838
TOR1B	0	genome.wustl.edu	37	9	132571734	132571734	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	132571734	132571734	C	T	SNP	TOR1B	ENST00000259339	human	ensembl	74_37	+1	known	missense	c.883	p.R295C	1.000	superfamily_P-loop_NTPase,pirsf_Torsin_subgr	pfam_Torsin,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pirsf_Torsin_subgr	-	no_errors	TOR1B	HGNC	ENSG00000136816				75	0	0	48	32	40
LAMC3	0	genome.wustl.edu	37	9	133914603	133914603	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	133914603	133914603	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	silent	c.1251	p.P417	0.682	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555				44	0	0	25	15	37.5
POMT1	0	genome.wustl.edu	37	9	134379721	134379721	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	134379721	134379721	C	T	SNP	POMT1	ENST00000372228	human	ensembl	74_37	+1	known	missense	c.116	p.A39V	1.000	pfam_Glyco_trans_39	pfam_Glyco_trans_39,pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif,pfscan_MIR_motif	-	no_errors	POMT1	HGNC	ENSG00000130714				60	0	0	34	23	40.3509
NTNG2	0	genome.wustl.edu	37	9	135042352	135042352	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135042352	135042352	G	A	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	missense	c.134	p.R45H	1.000	smart_Laminin_N,pfscan_Laminin_N	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358				81	0	0	53	24	31.1688
GTF3C4	0	genome.wustl.edu	37	9	135553865	135553865	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135553865	135553865	G	A	SNP	GTF3C4	ENST00000372146	human	ensembl	74_37	+1	known	missense	c.859	p.V287M	0.985	superfamily_WD40_repeat_dom	superfamily_WD40_repeat_dom	-	no_errors	GTF3C4	HGNC	ENSG00000125484				104	0	0	61	44	41.9048
TSC1	0	genome.wustl.edu	37	9	135786076	135786076	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135786076	135786076	C	T	SNP	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	missense	c.1145	p.G382D	1.000	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				207	0	0	125	52	29.3785
SURF6	0	genome.wustl.edu	37	9	136199105	136199105	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	136199105	136199105	G	A	SNP	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	missense	c.686	p.T229M	0.994	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296				75	0	0	71	11	13.4146
SURF2	0	genome.wustl.edu	37	9	136226922	136226922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	136226922	136226922	G	A	SNP	SURF2	ENST00000371964	human	ensembl	74_37	+1	known	missense	c.434	p.R145H	0.000	pfam_Surf2	pfam_Surf2	-	no_errors	SURF2	HGNC	ENSG00000148291				32	0	0	21	3	12.5
SARDH	0	genome.wustl.edu	37	9	136536724	136536724	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	136536724	136536724	G	A	SNP	SARDH	ENST00000371872	human	ensembl	74_37	-1	known	silent	c.2259	p.A753	0.004	pfam_GCV_T_N	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453				22	0	0	12	3	20
WDR5	0	genome.wustl.edu	37	9	137005059	137005059	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	137005059	137005059	G	A	SNP	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	silent	c.60	p.S20	0.529	NULL	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				84	0	0	41	29	41.4286
COL5A1	0	genome.wustl.edu	37	9	137710579	137710579	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	137710579	137710579	G	A	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.4308	p.P1436	0.059	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				30	0	0	15	9	37.5
OLFM1	0	genome.wustl.edu	37	9	137998693	137998693	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	137998693	137998693	G	A	SNP	OLFM1	ENST00000371793	human	ensembl	74_37	+1	known	missense	c.775	p.D259N	1.000	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM1	HGNC	ENSG00000130558				25	0	0	8	3	27.2727
MRPS2	0	genome.wustl.edu	37	9	138395646	138395646	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	138395646	138395646	G	A	SNP	MRPS2	ENST00000241600	human	ensembl	74_37	+1	known	silent	c.558	p.T186	0.000	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom	pfam_Ribosomal_S2,superfamily_Ribosomal_S2_flav_dom,prints_Ribosomal_S2	-	no_errors	MRPS2	HGNC	ENSG00000122140				61	0	0	37	20	35.0877
CARD9	0	genome.wustl.edu	37	9	139264798	139264798	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139264798	139264798	G	A	SNP	CARD9	ENST00000371732	human	ensembl	74_37	-1	known	missense	c.899	p.T300I	0.730	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD9	HGNC	ENSG00000187796				21	0	0	12	3	20
SEC16A	0	genome.wustl.edu	37	9	139370620	139370620	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139370620	139370620	G	A	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.1448	p.P483L	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396				41	0	0	27	26	49.0566
RABL6	0	genome.wustl.edu	37	9	139733726	139733726	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139733726	139733726	G	A	SNP	RABL6	ENST00000371663	human	ensembl	74_37	+1	known	missense	c.1549	p.A517T	0.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642				17	0	0	6	8	57.1429
FUT7	0	genome.wustl.edu	37	9	139925737	139925737	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139925737	139925737	G	A	SNP	FUT7	ENST00000314412	human	ensembl	74_37	-1	known	missense	c.454	p.P152S	1.000	pfam_Glyco_trans_10	pfam_Glyco_trans_10	-	no_errors	FUT7	HGNC	ENSG00000180549				14	0	0	9	4	30.7692
C9orf139	0	genome.wustl.edu	37	9	139929343	139929343	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139929343	139929343	C	G	SNP	C9orf139	ENST00000314330	human	ensembl	74_37	+1	known	missense	c.410	p.A137G	0.000	NULL	NULL	-	no_errors	C9orf139	HGNC	ENSG00000180539				106	0	0	52	33	38.8235
NOXA1	0	genome.wustl.edu	37	9	140327956	140327956	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	140327956	140327956	G	A	SNP	NOXA1	ENST00000341349	human	ensembl	74_37	+1	known	missense	c.961	p.A321T	0.054	smart_OPR_PB1	pfam_OPR_PB1,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_TPR_repeat,smart_OPR_PB1,smart_SH3_domain,pfscan_SH3_domain,pfscan_TPR-contain_dom	-	no_errors	NOXA1	HGNC	ENSG00000188747				17	0	0	7	5	41.6667
CACNA1B	0	genome.wustl.edu	37	9	140777198	140777198	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	140777198	140777198	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.393	p.D131	0.997	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				100	0	0	51	22	30.137
ADAMTSL1	0	genome.wustl.edu	37	9	18777506	18777506	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	18777506	18777506	C	T	SNP	ADAMTSL1	ENST00000380548	human	ensembl	74_37	+1	novel	silent	c.3279	p.R1093	0.000	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031				29	0	0	7	7	50
HAUS6	0	genome.wustl.edu	37	9	19070224	19070224	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	19070224	19070224	C	T	SNP	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	missense	c.1369	p.A457T	0.002	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874				28	0	0	14	9	39.1304
ACER2	0	genome.wustl.edu	37	9	19450475	19450475	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	19450475	19450475	C	T	SNP	ACER2	ENST00000340967	human	ensembl	74_37	+1	known	silent	c.669	p.Y223	1.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER2	HGNC	ENSG00000177076				113	1	0.877193	66	47	41.5929
SMARCA2	0	genome.wustl.edu	37	9	2039812	2039812	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	2039812	2039812	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	silent	c.702	p.Q234	0.014	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				30	0	0	15	4	21.0526
SMARCA2	0	genome.wustl.edu	37	9	2123753	2123753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	2123753	2123753	G	A	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	missense	c.3797	p.R1266Q	0.996	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503				41	0	0	15	11	42.3077
ELAVL2	0	genome.wustl.edu	37	9	23692861	23692861	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	23692861	23692861	G	A	SNP	ELAVL2	ENST00000380117	human	ensembl	74_37	-1	known	silent	c.774	p.D258	1.000	tigrfam_ELAD_HUD_SF	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL2	HGNC	ENSG00000107105				57	0	0	31	15	32.6087
CAAP1	0	genome.wustl.edu	37	9	26884837	26884837	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	26884837	26884837	A	G	SNP	CAAP1	ENST00000333916	human	ensembl	74_37	-1	known	silent	c.636	p.G212	1.000	NULL	NULL	-	no_errors	CAAP1	HGNC	ENSG00000120159				177	0	0	115	60	34.2857
DDX58	0	genome.wustl.edu	37	9	32487537	32487537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	32487537	32487537	G	A	SNP	DDX58	ENST00000379883	human	ensembl	74_37	-1	known	missense	c.1307	p.A436V	0.050	superfamily_P-loop_NTPase,smart_Helicase_ATP-bd	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_DEATH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201				78	0	0	51	25	32.8947
TOPORS	0	genome.wustl.edu	37	9	32541935	32541935	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	32541935	32541935	C	T	SNP	TOPORS	ENST00000360538	human	ensembl	74_37	-1	known	missense	c.2588	p.R863Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	TOPORS	HGNC	ENSG00000197579				156	1	0.636943	120	65	35.1351
PTENP1	0	genome.wustl.edu	37	9	33675379	33675379	+	RNA	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	33675379	33675379	C	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				23	0	0	20	10	33.3333
PTENP1	0	genome.wustl.edu	37	9	33675400	33675400	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	33675400	33675400	G	A	SNP	PTENP1	ENST00000532280	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PTENP1	HGNC	ENSG00000237984				27	0	0	30	8	21.0526
ARID3C	0	genome.wustl.edu	37	9	34623962	34623962	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	34623962	34623962	G	A	SNP	ARID3C	ENST00000378909	human	ensembl	74_37	-1	known	silent	c.474	p.G158	0.931	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3C	HGNC	ENSG00000205143				9	0	0	8	8	50
SPAG8	0	genome.wustl.edu	37	9	35810882	35810882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	35810882	35810882	C	T	SNP	SPAG8	ENST00000340291	human	ensembl	74_37	-1	known	missense	c.1037	p.R346Q	0.850	NULL	prints_Antifreeze_1	-	no_errors	SPAG8	HGNC	ENSG00000137098				96	0	0	38	24	38.7097
SPAG8	0	genome.wustl.edu	37	9	35811334	35811334	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	35811334	35811334	A	G	SNP	SPAG8	ENST00000340291	human	ensembl	74_37	-1	known	missense	c.709	p.W237R	0.001	NULL	prints_Antifreeze_1	-	no_errors	SPAG8	HGNC	ENSG00000137098				255	0	0	132	76	36.5385
FRMPD1	0	genome.wustl.edu	37	9	37740863	37740863	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	37740863	37740863	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	74_37	+1	known	missense	c.2338	p.P780S	0.988	NULL	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601				45	0	0	27	17	38.6364
IGFBPL1	0	genome.wustl.edu	37	9	38411500	38411500	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	38411500	38411500	G	A	SNP	IGFBPL1	ENST00000377694	human	ensembl	74_37	-1	known	missense	c.734	p.A245V	0.727	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Kazal_dom,pfam_IGFBP-like,smart_IGFBP-like,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pirsf_IGFBP_rP_mac25,pfscan_Ig-like_dom	-	no_errors	IGFBPL1	HGNC	ENSG00000137142				69	0	0	31	16	34.0426
CNTNAP3B	0	genome.wustl.edu	37	9	43737470	43737470	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	43737470	43737470	A	G	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	missense	c.340	p.S114G	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				114	0	0	64	50	43.8596
SPATA31A7	0	genome.wustl.edu	37	9	65506469	65506469	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	65506469	65506469	C	T	SNP	SPATA31A7	ENST00000355045	human	ensembl	74_37	-1	known	missense	c.1091	p.R364Q	0.003	NULL	NULL	-	no_errors	SPATA31A7	HGNC	ENSG00000234734				146	0	0	37	129	77.7108
FOXD4L5	0	genome.wustl.edu	37	9	70177122	70177122	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	70177122	70177122	C	T	SNP	FOXD4L5	ENST00000377420	human	ensembl	74_37	-1	known	missense	c.862	p.A288T	0.367	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L5	HGNC	ENSG00000204779				109	0	0	83	21	20.1923
PGM5	0	genome.wustl.edu	37	9	70993152	70993152	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	70993152	70993152	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.299	p.S100L	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				83	0	0	83	15	15.3061
PRKACG	0	genome.wustl.edu	37	9	71628114	71628114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	71628114	71628114	C	T	SNP	PRKACG	ENST00000377276	human	ensembl	74_37	-1	known	missense	c.895	p.A299T	0.957	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059				110	0	0	66	42	38.8889
TRPM3	0	genome.wustl.edu	37	9	73205921	73205921	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	73205921	73205921	T	C	SNP	TRPM3	ENST00000396285	human	ensembl	74_37	-1	novel	silent	c.2754	p.T918	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom	-	no_errors	TRPM3	HGNC	ENSG00000083067				78	0	0	49	22	30.9859
ZFAND5	0	genome.wustl.edu	37	9	74975132	74975132	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	74975132	74975132	C	T	SNP	ZFAND5	ENST00000237937	human	ensembl	74_37	-1	known	missense	c.157	p.A53T	1.000	NULL	pfam_Znf_A20,pfam_Znf_AN1,smart_Znf_A20,smart_Znf_AN1,pfscan_Znf_A20,pfscan_Znf_AN1	-	no_errors	ZFAND5	HGNC	ENSG00000107372				61	0	0	60	29	32.5843
PRUNE2	0	genome.wustl.edu	37	9	79320991	79320991	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	79320991	79320991	C	T	SNP	PRUNE2	ENST00000428286	human	ensembl	74_37	-1	known	missense	c.5122	p.A1708T	0.000	NULL	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				150	0	0	77	47	37.9032
PRUNE2	0	genome.wustl.edu	37	9	79328535	79328535	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	79328535	79328535	G	C	SNP	PRUNE2	ENST00000376718	human	ensembl	74_37	-1	novel	missense	c.859	p.Q287E	0.940	pfam_DHHA2	pfam_Bcl2-/adenovirus-E1B,pfam_CRAL-TRIO_dom,pfam_DHHA2,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	-	no_errors	PRUNE2	HGNC	ENSG00000106772				14	0	0	12	6	33.3333
VPS13A	0	genome.wustl.edu	37	9	79985472	79985472	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	79985472	79985472	G	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.8885	p.R2962H	1.000	pfam_Autophagy-rel_C	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969				76	0	0	50	37	42.5287
TLE4	0	genome.wustl.edu	37	9	82323523	82323523	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	82323523	82323523	C	T	SNP	TLE4	ENST00000376520	human	ensembl	74_37	+1	known	missense	c.1181	p.T394I	1.000	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE4	HGNC	ENSG00000106829				130	0	0	82	44	34.9206
DMRT1	0	genome.wustl.edu	37	9	847112	847112	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	847112	847112	G	A	SNP	DMRT1	ENST00000382276	human	ensembl	74_37	+1	known	silent	c.507	p.P169	0.317	pfam_DMRT1-like	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090				60	0	0	32	23	41.8182
HNRNPK	0	genome.wustl.edu	37	9	86585140	86585140	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	86585140	86585140	C	A	SNP	HNRNPK	ENST00000376263	human	ensembl	74_37	-1	known	missense	c.1298	p.R433L	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_ROK_N,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	HNRNPK	HGNC	ENSG00000165119				77	0	0	58	37	38.9474
NTRK2	0	genome.wustl.edu	37	9	87342787	87342787	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	87342787	87342787	G	T	SNP	NTRK2	ENST00000277120	human	ensembl	74_37	+1	known	missense	c.1072	p.D358Y	0.930	pfam_Ig_I-set,prints_Tyr_kinase_NGF_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_2	-	no_errors	NTRK2	HGNC	ENSG00000148053				79	0	0	53	33	38.3721
SHC3	0	genome.wustl.edu	37	9	91652963	91652963	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	91652963	91652963	G	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	missense	c.1601	p.T534M	0.999	pfam_SH2,smart_SH2,pfscan_SH2	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082				131	0	0	92	53	36.5517
SEMA4D	0	genome.wustl.edu	37	9	92011709	92011709	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	92011709	92011709	G	A	SNP	SEMA4D	ENST00000356444	human	ensembl	74_37	-1	known	silent	c.357	p.S119	0.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Plexin_repeat,pfam_Immunoglobulin,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,smart_Ig_sub2,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA4D	HGNC	ENSG00000187764				26	0	0	17	8	32
SYK	0	genome.wustl.edu	37	9	93640023	93640023	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	93640023	93640023	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	missense	c.1352	p.A451V	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025				58	0	0	51	21	29.1667
NOL8	0	genome.wustl.edu	37	9	95077846	95077846	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	95077846	95077846	A	G	SNP	NOL8	ENST00000442668	human	ensembl	74_37	-1	known	missense	c.1061	p.L354S	0.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	NOL8	HGNC	ENSG00000198000				22	0	0	12	10	45.4545
FAM120A	0	genome.wustl.edu	37	9	96278450	96278450	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	96278450	96278450	G	A	SNP	FAM120A	ENST00000333936	human	ensembl	74_37	+1	known	silent	c.1317	p.P439	0.897	NULL	NULL	-	no_errors	FAM120A	HGNC	ENSG00000048828				75	0	0	40	33	45.2055
ZNF169	0	genome.wustl.edu	37	9	97063255	97063255	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	97063255	97063255	C	T	SNP	ZNF169	ENST00000395395	human	ensembl	74_37	+1	known	missense	c.1415	p.T472I	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF169	HGNC	ENSG00000175787				67	0	0	49	18	26.8657
DRP2	0	genome.wustl.edu	37	X	100492712	100492712	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	100492712	100492712	T	A	SNP	DRP2	ENST00000395209	human	ensembl	74_37	+1	known	missense	c.386	p.L129Q	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin-related_2	pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_Znf_ZZ,pfam_Spectrin_repeat,pfam_WW_dom,superfamily_WW_dom,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin-related_2,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DRP2	HGNC	ENSG00000102385				150	0	0	147	9	5.76923
ARMCX2	0	genome.wustl.edu	37	X	100911088	100911088	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	100911088	100911088	A	G	SNP	ARMCX2	ENST00000328766	human	ensembl	74_37	-1	known	missense	c.1487	p.M496T	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867				173	0	0	97	82	45.8101
ARMCX2	0	genome.wustl.edu	37	X	100911473	100911473	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	100911473	100911473	C	T	SNP	ARMCX2	ENST00000328766	human	ensembl	74_37	-1	known	missense	c.1102	p.V368I	0.003	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867				92	0	0	63	38	37.6238
WWC3	0	genome.wustl.edu	37	X	10094192	10094192	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	10094192	10094192	C	T	SNP	WWC3	ENST00000380861	human	ensembl	74_37	+1	known	missense	c.1952	p.T651M	1.000	superfamily_C2_dom	superfamily_C2_dom	-	no_errors	WWC3	HGNC	ENSG00000047644				370	0	0	227	129	36.236
ZMAT1	0	genome.wustl.edu	37	X	101138381	101138381	+	RNA	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	101138381	101138381	T	A	SNP	ZMAT1	ENST00000494068	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZMAT1	HGNC	ENSG00000166432				10	0	0	9	7	43.75
TCEAL3	0	genome.wustl.edu	37	X	102864512	102864512	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	102864512	102864512	G	A	SNP	TCEAL3	ENST00000243286	human	ensembl	74_37	+1	known	missense	c.520	p.A174T	0.000	NULL	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507				272	0	0	222	44	16.5414
RNF128	0	genome.wustl.edu	37	X	105970199	105970199	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	105970199	105970199	G	T	SNP	RNF128	ENST00000255499	human	ensembl	74_37	+1	known	missense	c.56	p.R19I	0.823	NULL	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF128	HGNC	ENSG00000133135				8	0	0	5	4	44.4444
TSC22D3	0	genome.wustl.edu	37	X	106957756	106957756	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	106957756	106957756	G	A	SNP	TSC22D3	ENST00000315660	human	ensembl	74_37	-1	known	missense	c.596	p.A199V	1.000	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D3	HGNC	ENSG00000157514				48	0	0	39	16	29.0909
DCX	0	genome.wustl.edu	37	X	110653323	110653323	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	110653323	110653323	G	A	SNP	DCX	ENST00000338081	human	ensembl	74_37	-1	known	missense	c.547	p.R183C	1.000	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279				122	0	0	62	45	42.0561
TRPC5	0	genome.wustl.edu	37	X	111195335	111195335	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	111195335	111195335	C	T	SNP	TRPC5	ENST00000262839	human	ensembl	74_37	-1	known	missense	c.314	p.R105H	1.000	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315				162	0	0	97	62	38.9937
SLC6A14	0	genome.wustl.edu	37	X	115572199	115572199	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	115572199	115572199	T	G	SNP	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	missense	c.280	p.C94G	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				304	1	0.327869	182	115	38.7205
KLHL13	0	genome.wustl.edu	37	X	117043339	117043339	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	117043339	117043339	G	A	SNP	KLHL13	ENST00000539496	human	ensembl	74_37	-1	known	missense	c.1300	p.R434C	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL13	HGNC	ENSG00000003096				60	0	0	61	5	7.57576
RNF113A	0	genome.wustl.edu	37	X	119005267	119005267	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119005267	119005267	G	T	SNP	RNF113A	ENST00000371442	human	ensembl	74_37	-1	known	missense	c.310	p.R104S	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352				349	0	0	225	125	35.7143
AKAP14	0	genome.wustl.edu	37	X	119037280	119037280	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119037280	119037280	T	G	SNP	AKAP14	ENST00000371431	human	ensembl	74_37	+1	known	missense	c.94	p.Y32D	0.002	NULL	NULL	-	no_errors	AKAP14	HGNC	ENSG00000186471				98	0	0	61	41	40.1961
RHOXF2	0	genome.wustl.edu	37	X	119293304	119293304	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119293304	119293304	C	T	SNP	RHOXF2	ENST00000371388	human	ensembl	74_37	+1	known	missense	c.463	p.R155C	0.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	RHOXF2	HGNC	ENSG00000131721				31	0	0	18	17	48.5714
TMEM255A	0	genome.wustl.edu	37	X	119410901	119410901	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119410901	119410901	G	A	SNP	TMEM255A	ENST00000309720	human	ensembl	74_37	-1	known	missense	c.586	p.R196W	1.000	NULL	NULL	-	no_errors	TMEM255A	HGNC	ENSG00000125355				103	0	0	78	27	25.7143
CUL4B	0	genome.wustl.edu	37	X	119691798	119691798	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119691798	119691798	T	A	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.707	p.N236I	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				32	0	0	18	12	40
CUL4B	0	genome.wustl.edu	37	X	119691804	119691804	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119691804	119691804	T	C	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.701	p.K234R	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				34	0	0	21	11	34.375
GLUD2	0	genome.wustl.edu	37	X	120182193	120182193	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	120182193	120182193	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.655	p.V219I	0.999	pfam_Glu/Leu/Phe/Val_DH_dimer_dom	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				152	0	0	85	58	40.5594
TENM1	0	genome.wustl.edu	37	X	123539072	123539072	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	123539072	123539072	G	A	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.5200	p.R1734C	0.727	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				85	0	0	57	36	38.7097
OCRL	0	genome.wustl.edu	37	X	128703273	128703273	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	128703273	128703273	G	A	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.1499	p.R500Q	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				129	0	0	94	57	37.7483
OCRL	0	genome.wustl.edu	37	X	128723844	128723844	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	128723844	128723844	G	A	SNP	OCRL	ENST00000371113	human	ensembl	74_37	+1	known	missense	c.2492	p.C831Y	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_Endo/exonuclease/phosphatase,pfam_RhoGAP_dom,superfamily_Endo/exonuclease/phosphatase,superfamily_Rho_GTPase_activation_prot,smart_IPPc,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	OCRL	HGNC	ENSG00000122126				103	0	0	60	44	42.3077
UTP14A	0	genome.wustl.edu	37	X	129055422	129055422	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	129055422	129055422	G	C	SNP	UTP14A	ENST00000394422	human	ensembl	74_37	+1	known	missense	c.1207	p.G403R	0.038	pfam_SSU_processome_Utp14	pfam_SSU_processome_Utp14	-	no_errors	UTP14A	HGNC	ENSG00000156697				66	0	0	34	22	39.2857
RAB33A	0	genome.wustl.edu	37	X	129306239	129306239	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	129306239	129306239	C	A	SNP	RAB33A	ENST00000257017	human	ensembl	74_37	+1	known	missense	c.203	p.T68N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33A	HGNC	ENSG00000134594				110	0	0	71	37	34.2593
GPR119	0	genome.wustl.edu	37	X	129518465	129518465	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	129518465	129518465	C	A	SNP	GPR119	ENST00000276218	human	ensembl	74_37	-1	known	missense	c.957	p.R319S	0.875	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR119	HGNC	ENSG00000147262				134	0	0	67	41	37.963
ENSG00000229702	0	genome.wustl.edu	37	X	129629153	129629153	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	129629153	129629153	G	A	SNP	ENSG00000229702	ENST00000458525	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP1-274L7.1	Clone_based_vega_gene	ENSG00000229702				50	0	0	39	21	35
TMSB4X	0	genome.wustl.edu	37	X	12994449	12994449	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	12994449	12994449	G	A	SNP	TMSB4X	ENST00000380633	human	ensembl	74_37	+1	known	silent	c.69	p.T23	1.000	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	pfam_Thymosin_b4,smart_Thymosin_b4,pirsf_Thymosin_b4_metazoa	-	no_errors	TMSB4X	HGNC	ENSG00000205542				64	0	0	53	40	43.0108
OR13H1	0	genome.wustl.edu	37	X	130678359	130678359	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	130678359	130678359	C	T	SNP	OR13H1	ENST00000338616	human	ensembl	74_37	+1	known	silent	c.312	p.S104	0.045	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13H1	HGNC	ENSG00000171054				122	0	0	82	6	6.81818
RAP2C	0	genome.wustl.edu	37	X	131351264	131351264	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	131351264	131351264	A	T	SNP	RAP2C	ENST00000342983	human	ensembl	74_37	-1	known	missense	c.33	p.S11R	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAP2C	HGNC	ENSG00000123728				328	0	0	187	118	38.6885
GPC4	0	genome.wustl.edu	37	X	132439845	132439845	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	132439845	132439845	G	A	SNP	GPC4	ENST00000370828	human	ensembl	74_37	-1	known	silent	c.1110	p.P370	0.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC4	HGNC	ENSG00000076716				349	1	0.285714	212	112	34.5679
GPR112	0	genome.wustl.edu	37	X	135428783	135428783	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	135428783	135428783	T	C	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.2918	p.I973T	0.001	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920				183	0	0	134	86	39.0909
MCF2	0	genome.wustl.edu	37	X	138729031	138729031	+	Silent	SNP	A	A	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	138729031	138729031	A	T	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	silent	c.312	p.I104	1.000	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977				8	0	0	8	8	50
FMR1	0	genome.wustl.edu	37	X	147026364	147026364	+	RNA	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	147026364	147026364	G	A	SNP	FMR1	ENST00000478848	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	FMR1	HGNC	ENSG00000102081				18	0	0	15	7	31.8182
MAMLD1	0	genome.wustl.edu	37	X	149671777	149671777	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	149671777	149671777	C	T	SNP	MAMLD1	ENST00000262858	human	ensembl	74_37	+1	known	silent	c.2274	p.C758	0.984	NULL	NULL	-	no_errors	MAMLD1	HGNC	ENSG00000013619				14	0	0	11	6	35.2941
HMGB3	0	genome.wustl.edu	37	X	150154642	150154642	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	150154642	150154642	C	A	SNP	HMGB3	ENST00000325307	human	ensembl	74_37	+1	known	missense	c.269	p.P90H	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGB3	HGNC	ENSG00000029993				40	0	0	20	15	42.8571
GPR50	0	genome.wustl.edu	37	X	150349152	150349152	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	150349152	150349152	G	A	SNP	GPR50	ENST00000218316	human	ensembl	74_37	+1	known	missense	c.1097	p.R366Q	0.975	prints_Mel_rcpt_1X	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mel_rcpt_1X,prints_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195				158	1	0.628931	77	78	50.3226
CETN2	0	genome.wustl.edu	37	X	151996414	151996414	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	151996414	151996414	G	A	SNP	CETN2	ENST00000370277	human	ensembl	74_37	-1	known	missense	c.490	p.R164C	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN2	HGNC	ENSG00000147400				166	0	0	98	44	30.9859
ZNF275	0	genome.wustl.edu	37	X	152613122	152613122	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	152613122	152613122	G	A	SNP	ZNF275	ENST00000440091	human	ensembl	74_37	+1	known	missense	c.1069	p.G357S	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF275	HGNC	ENSG00000063587				26	0	0	13	9	40.9091
HAUS7	0	genome.wustl.edu	37	X	152720451	152720451	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	152720451	152720451	C	T	SNP	HAUS7	ENST00000370212	human	ensembl	74_37	-1	known	missense	c.1021	p.A341T	0.000	NULL	NULL	-	no_errors	HAUS7	HGNC	ENSG00000213397				100	1	0.990099	67	32	32.3232
L1CAM	0	genome.wustl.edu	37	X	153131206	153131206	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153131206	153131206	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.2506	p.R836W	0.034	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				252	0	0	139	89	39.0351
HCFC1	0	genome.wustl.edu	37	X	153219633	153219633	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153219633	153219633	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.4217	p.A1406V	0.001	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				62	0	0	31	19	38
HCFC1	0	genome.wustl.edu	37	X	153227748	153227748	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153227748	153227748	G	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.722	p.T241M	1.000	pfam_Kelch_2	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534				24	0	0	18	12	40
MECP2	0	genome.wustl.edu	37	X	153296753	153296753	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153296753	153296753	G	A	SNP	MECP2	ENST00000303391	human	ensembl	74_37	-1	known	missense	c.526	p.P176S	1.000	superfamily_DNA-bd_dom,pirsf_Me_CpG-bd_MeCP2	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,superfamily_Ig_E-set,smart_Methyl_CpG_DNA-bd,pirsf_Me_CpG-bd_MeCP2,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MECP2	HGNC	ENSG00000169057				158	0	0	58	56	49.1228
OPN1LW	0	genome.wustl.edu	37	X	153420113	153420113	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153420113	153420113	G	A	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	missense	c.643	p.G215R	0.986	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				144	0	0	152	60	28.3019
OPN1LW	0	genome.wustl.edu	37	X	153421957	153421957	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153421957	153421957	C	A	SNP	OPN1LW	ENST00000369951	human	ensembl	74_37	+1	known	silent	c.933	p.A311	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Opsin	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_Opsin_red/grn,prints_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN1LW	HGNC	ENSG00000102076				326	0	0	308	114	27.0142
FLNA	0	genome.wustl.edu	37	X	153593797	153593797	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153593797	153593797	C	T	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.1487	p.R496Q	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924				68	0	0	43	21	32.8125
PLXNA3	0	genome.wustl.edu	37	X	153689624	153689624	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153689624	153689624	C	T	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	silent	c.780	p.S260	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				125	0	0	72	38	34.5455
SLC10A3	0	genome.wustl.edu	37	X	153715994	153715994	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	153715994	153715994	G	T	SNP	SLC10A3	ENST00000263512	human	ensembl	74_37	-1	known	missense	c.1286	p.A429D	1.000	tigrfam_Bil_ac_transpt	pfam_BilAc/Na_symport,tigrfam_Bil_ac_transpt	-	no_errors	SLC10A3	HGNC	ENSG00000126903				61	0	0	25	18	41.8605
TMLHE	0	genome.wustl.edu	37	X	154754197	154754197	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	154754197	154754197	C	T	SNP	TMLHE	ENST00000334398	human	ensembl	74_37	-1	known	missense	c.278	p.R93H	0.997	pfam_DUF971,tigrfam_Trimethyllysine_dOase	pfam_Taurine_dOase,pfam_DUF971,tigrfam_Trimethyllysine_dOase	-	no_errors	TMLHE	HGNC	ENSG00000185973				231	0	0	110	71	39.2265
SPRY3	0	genome.wustl.edu	37	X	155004342	155004342	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	155004342	155004342	G	A	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	missense	c.809	p.C270Y	1.000	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939				169	0	0	74	65	46.7626
TXLNG	0	genome.wustl.edu	37	X	16859880	16859880	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	16859880	16859880	G	A	SNP	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	silent	c.1578	p.S526	0.038	NULL	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				164	0	0	79	61	43.5714
RBBP7	0	genome.wustl.edu	37	X	16870926	16870926	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	16870926	16870926	G	A	SNP	RBBP7	ENST00000380087	human	ensembl	74_37	-1	known	silent	c.831	p.C277	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP7	HGNC	ENSG00000102054				184	0	0	116	83	41.7085
AKAP17A	0	genome.wustl.edu	37	X	1712694	1712694	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	1712694	1712694	C	T	SNP	AKAP17A	ENST00000313871	human	ensembl	74_37	+1	known	silent	c.339	p.R113	0.937	NULL	NULL	-	no_errors	AKAP17A	HGNC	ENSG00000197976				220	0	0	129	79	37.9808
ZNF645	0	genome.wustl.edu	37	X	22291518	22291518	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	22291518	22291518	G	A	SNP	ZNF645	ENST00000323684	human	ensembl	74_37	+1	known	missense	c.410	p.R137H	0.000	pfscan_Znf_C2H2	pfscan_Znf_RING,pfscan_Znf_C2H2	-	no_errors	ZNF645	HGNC	ENSG00000175809				97	0	0	60	38	38.7755
POLA1	0	genome.wustl.edu	37	X	24750565	24750565	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	24750565	24750565	T	C	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	missense	c.1765	p.F589L	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868				47	0	0	30	20	40
IL1RAPL1	0	genome.wustl.edu	37	X	29973787	29973787	+	Silent	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	29973787	29973787	T	C	SNP	IL1RAPL1	ENST00000302196	human	ensembl	74_37	+1	known	silent	c.1941	p.H647	1.000	NULL	pfam_TIR_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_TIR_dom,smart_Ig_sub,smart_Ig_sub2,smart_TIR_dom,pfscan_TIR_dom,pfscan_Ig-like_dom	-	no_errors	IL1RAPL1	HGNC	ENSG00000169306				38	0	0	27	16	37.2093
ARSF	0	genome.wustl.edu	37	X	3002316	3002316	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	3002316	3002316	C	T	SNP	ARSF	ENST00000359361	human	ensembl	74_37	+1	known	nonsense	c.439	p.R147*	0.001	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSF	HGNC	ENSG00000062096				104	0	0	64	34	34.6939
PPP2R3B	0	genome.wustl.edu	37	X	306252	306252	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	306252	306252	G	A	SNP	PPP2R3B	ENST00000390665	human	ensembl	74_37	-1	known	silent	c.1035	p.H345	0.999	NULL	pfscan_EF_hand_dom	-	no_errors	PPP2R3B	HGNC	ENSG00000167393				55	0	0	21	17	44.7368
TAB3	0	genome.wustl.edu	37	X	30870981	30870981	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	30870981	30870981	G	A	SNP	TAB3	ENST00000288422	human	ensembl	74_37	-1	known	missense	c.1624	p.R542W	0.931	NULL	pfam_CUE,pfam_Znf_RanBP2,superfamily_UBA-like,smart_CUE,smart_Znf_RanBP2,pfscan_CUE,pfscan_Znf_RanBP2	-	no_errors	TAB3	HGNC	ENSG00000157625				66	0	0	50	24	32.4324
MXRA5	0	genome.wustl.edu	37	X	3235295	3235295	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	3235295	3235295	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.6427	p.A2143T	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				39	0	0	20	11	35.4839
MXRA5	0	genome.wustl.edu	37	X	3240108	3240108	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	3240108	3240108	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	silent	c.3618	p.V1206	0.000	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825				79	0	0	64	30	31.9149
CXorf22	0	genome.wustl.edu	37	X	35989784	35989784	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	35989784	35989784	G	A	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	silent	c.2052	p.A684	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164				43	0	0	26	20	43.4783
FAM47C	0	genome.wustl.edu	37	X	37027114	37027114	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	37027114	37027114	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.631	p.R211C	0.001	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				77	0	0	37	25	40.3226
FAM47C	0	genome.wustl.edu	37	X	37027775	37027775	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	37027775	37027775	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.1292	p.P431L	0.367	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				116	0	0	73	33	31.1321
USP9X	0	genome.wustl.edu	37	X	41025387	41025387	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	41025387	41025387	C	T	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	nonsense	c.2248	p.R750*	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				69	0	0	50	21	29.5775
USP9X	0	genome.wustl.edu	37	X	41075795	41075795	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	41075795	41075795	G	A	SNP	USP9X	ENST00000324545	human	ensembl	74_37	+1	known	missense	c.5975	p.R1992Q	1.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP9X	HGNC	ENSG00000124486				111	0	0	63	44	41.1215
NDUFB11	0	genome.wustl.edu	37	X	47003890	47003890	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	47003890	47003890	G	A	SNP	NDUFB11	ENST00000276062	human	ensembl	74_37	-1	known	silent	c.189	p.D63	0.753	pfam_NADH_UbQ_OxRdtase_ESSS_su	pfam_NADH_UbQ_OxRdtase_ESSS_su	-	no_errors	NDUFB11	HGNC	ENSG00000147123				27	0	0	23	18	43.9024
GLOD5	0	genome.wustl.edu	37	X	48629416	48629416	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48629416	48629416	A	G	SNP	GLOD5	ENST00000303227	human	ensembl	74_37	+1	known	missense	c.275	p.K92R	1.000	pfam_Glyas_Fos-R_dOase_dom	pfam_Glyas_Fos-R_dOase_dom	-	no_errors	GLOD5	HGNC	ENSG00000171433				32	0	0	15	8	34.7826
GATA1	0	genome.wustl.edu	37	X	48649621	48649621	+	Silent	SNP	C	C	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48649621	48649621	C	A	SNP	GATA1	ENST00000376670	human	ensembl	74_37	+1	known	silent	c.105	p.P35	0.995	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145				13	0	0	10	5	33.3333
HDAC6	0	genome.wustl.edu	37	X	48678589	48678589	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48678589	48678589	C	T	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	missense	c.2306	p.S769L	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				80	0	0	39	36	48
TFE3	0	genome.wustl.edu	37	X	48891050	48891050	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48891050	48891050	G	A	SNP	TFE3	ENST00000315869	human	ensembl	74_37	-1	known	missense	c.1066	p.R356C	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_ZIP_TF_MiT/TFE,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TFE3	HGNC	ENSG00000068323				58	0	0	22	29	56.8627
CCDC120	0	genome.wustl.edu	37	X	48925127	48925127	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48925127	48925127	G	A	SNP	CCDC120	ENST00000603986	human	ensembl	74_37	+1	known	missense	c.1477	p.G493S	0.000	NULL	pfam_DUF3338	-	no_errors	CCDC120	HGNC	ENSG00000147144				46	0	0	22	19	46.3415
GPKOW	0	genome.wustl.edu	37	X	48973476	48973476	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48973476	48973476	C	T	SNP	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	missense	c.821	p.R274H	0.839	superfamily_Translation_prot_SH3-like	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				61	0	0	36	25	40.9836
MAGIX	0	genome.wustl.edu	37	X	49021225	49021225	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	49021225	49021225	G	A	SNP	MAGIX	ENST00000412696	human	ensembl	74_37	+1	known	missense	c.304	p.A102T	0.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621				185	0	0	107	64	37.4269
CACNA1F	0	genome.wustl.edu	37	X	49078999	49078999	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	49078999	49078999	G	A	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	missense	c.2303	p.T768I	0.995	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				21	0	0	39	10	20.4082
CACNA1F	0	genome.wustl.edu	37	X	49079419	49079419	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	49079419	49079419	G	A	SNP	CACNA1F	ENST00000376265	human	ensembl	74_37	-1	known	missense	c.2087	p.T696M	1.000	pfam_Ion_trans_dom,prints_VDCCAlpha1,prints_VDCC_L_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1F	HGNC	ENSG00000102001				21	0	0	15	5	25
CCNB3	0	genome.wustl.edu	37	X	50052149	50052149	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	50052149	50052149	T	C	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.980	p.F327S	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				189	1	0.526316	116	80	40.8163
CCNB3	0	genome.wustl.edu	37	X	50090755	50090755	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	50090755	50090755	T	C	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.3941	p.M1314T	1.000	pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				39	0	0	27	12	30.7692
SHROOM4	0	genome.wustl.edu	37	X	50378059	50378059	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	50378059	50378059	G	A	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	silent	c.1014	p.G338	0.255	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352				69	0	0	47	3	6
HUWE1	0	genome.wustl.edu	37	X	53657955	53657955	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	53657955	53657955	T	C	SNP	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	missense	c.794	p.H265R	1.000	pfam_E3_Ub_ligase_DUF908,superfamily_ARM-type_fold	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758				79	0	0	60	36	37.5
FAM120C	0	genome.wustl.edu	37	X	54117833	54117833	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	54117833	54117833	C	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	missense	c.2339	p.R780Q	1.000	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083				42	0	0	37	14	27.451
TRO	0	genome.wustl.edu	37	X	54949891	54949891	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	54949891	54949891	G	A	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.926	p.G309D	0.015	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445				12	0	0	6	7	53.8462
MAGEH1	0	genome.wustl.edu	37	X	55478849	55478849	+	Silent	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	55478849	55478849	A	G	SNP	MAGEH1	ENST00000342972	human	ensembl	74_37	+1	known	silent	c.42	p.R14	0.016	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEH1	HGNC	ENSG00000187601				28	0	0	11	7	38.8889
NLGN4X	0	genome.wustl.edu	37	X	5821129	5821129	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	5821129	5821129	G	A	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	silent	c.1650	p.F550	1.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938				69	0	0	44	34	43.5897
SHOX	0	genome.wustl.edu	37	X	601806	601806	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	601806	601806	G	A	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	missense	c.617	p.R206Q	0.994	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960				98	0	0	31	36	53.7313
MTMR8	0	genome.wustl.edu	37	X	63444306	63444306	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	63444306	63444306	C	T	SNP	MTMR8	ENST00000453546	human	ensembl	74_37	-1	known	missense	c.1991	p.R664H	0.991	pfam_SOCS_C,smart_SOCS_C	pfam_Myotubularin-like_Pase_dom,pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	MTMR8	HGNC	ENSG00000102043				53	0	0	40	13	24.5283
ZC3H12B	0	genome.wustl.edu	37	X	64722913	64722913	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	64722913	64722913	A	G	SNP	ZC3H12B	ENST00000338957	human	ensembl	74_37	+1	known	missense	c.2335	p.M779V	0.994	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12B	HGNC	ENSG00000102053				101	0	0	50	36	41.8605
MSN	0	genome.wustl.edu	37	X	64949377	64949377	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	64949377	64949377	C	T	SNP	MSN	ENST00000360270	human	ensembl	74_37	+1	known	silent	c.270	p.S90	0.063	pirsf_ERM,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pirsf_ERM,pfam_ERM_C_dom,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,superfamily_FERM_central,superfamily_Moesin_tail,smart_Band_41_domain,prints_Ez/rad/moesin_like,prints_Band_41_fam,pfscan_FERM_domain	-	no_errors	MSN	HGNC	ENSG00000147065				109	1	0.909091	66	38	36.5385
DLG3	0	genome.wustl.edu	37	X	69669611	69669611	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	69669611	69669611	C	T	SNP	DLG3	ENST00000194900	human	ensembl	74_37	+1	known	missense	c.659	p.A220V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_GK/Ca_channel_bsu,pfam_PDZ,pfam_PDZ_assoc,pfam_MAGUK_PEST_N,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,superfamily_PDZ,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG3	HGNC	ENSG00000082458				18	0	0	20	11	35.4839
NLGN3	0	genome.wustl.edu	37	X	70384062	70384062	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	70384062	70384062	G	A	SNP	NLGN3	ENST00000358741	human	ensembl	74_37	+1	known	missense	c.797	p.R266H	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN3	HGNC	ENSG00000196338				52	0	0	55	5	8.33333
RGAG4	0	genome.wustl.edu	37	X	71349920	71349920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	71349920	71349920	C	T	SNP	RGAG4	ENST00000479991	human	ensembl	74_37	-1	known	missense	c.1471	p.E491K	0.789	NULL	pfam_Retrotrans_gag_dom	-	no_errors	RGAG4	HGNC	ENSG00000242732				60	0	0	52	6	10.3448
STS	0	genome.wustl.edu	37	X	7267953	7267953	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	7267953	7267953	T	C	SNP	STS	ENST00000217961	human	ensembl	74_37	+1	known	missense	c.1403	p.F468S	0.986	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846				172	0	0	186	11	5.58376
MAP2K4P1	0	genome.wustl.edu	37	X	72745431	72745431	+	RNA	SNP	C	C	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	72745431	72745431	C	G	SNP	MAP2K4P1	ENST00000602584	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MAP2K4P1	HGNC	ENSG00000269904				34	0	0	13	11	45.8333
KIAA2022	0	genome.wustl.edu	37	X	73963005	73963005	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	73963005	73963005	T	C	SNP	KIAA2022	ENST00000055682	human	ensembl	74_37	-1	known	missense	c.1387	p.M463V	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030				54	0	0	36	17	32.0755
MAGT1	0	genome.wustl.edu	37	X	77112909	77112909	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	77112909	77112909	C	T	SNP	MAGT1	ENST00000358075	human	ensembl	74_37	-1	known	missense	c.572	p.R191Q	0.997	superfamily_Thioredoxin-like_fold	pfam_OligosaccharylTrfase_OST3/OST6,superfamily_Thioredoxin-like_fold	-	no_errors	MAGT1	HGNC	ENSG00000102158				184	0	0	126	68	35.0515
P2RY10	0	genome.wustl.edu	37	X	78216537	78216537	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	78216537	78216537	G	A	SNP	P2RY10	ENST00000171757	human	ensembl	74_37	+1	known	missense	c.520	p.D174N	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	P2RY10	HGNC	ENSG00000078589				82	0	0	44	37	45.679
ZNF711	0	genome.wustl.edu	37	X	84510642	84510642	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	84510642	84510642	G	A	SNP	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	missense	c.391	p.D131N	1.000	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180				79	0	0	68	43	38.7387
DACH2	0	genome.wustl.edu	37	X	85403798	85403798	+	Silent	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	85403798	85403798	C	T	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	silent	c.174	p.G58	0.699	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				61	0	0	43	40	48.1928
DIAPH2	0	genome.wustl.edu	37	X	96167391	96167391	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	96167391	96167391	G	A	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	missense	c.652	p.D218N	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				15	0	0	12	4	25
SHROOM2	0	genome.wustl.edu	37	X	9900722	9900722	+	Silent	SNP	G	G	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	9900722	9900722	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	silent	c.3399	p.E1133	1.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950				83	0	0	44	28	38.8889
SYTL4	0	genome.wustl.edu	37	X	99934400	99934400	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	99934400	99934400	C	T	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	missense	c.1574	p.G525E	0.991	superfamily_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362				60	0	0	31	8	20.5128
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037835	10037835	+	RNA	SNP	T	T	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	Y	10037835	10037835	T	C	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				21	0	0	17	4	19.0476
CDC14A	0	genome.wustl.edu	37	1	100889837	100889837	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	100889837	100889837	C	-	DEL	CDC14A	ENST00000361544	human	ensembl	74_37	+1	known	frame_shift_del	c.369	p.Y126fs	0.021	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	CDC14A	HGNC	ENSG00000079335				94	0	0	78	20	20.4082
PRPF38B	0	genome.wustl.edu	37	1	109241188	109241188	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	109241188	109241188	T	-	DEL	PRPF38B	ENST00000485810	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRPF38B	HGNC	ENSG00000134186				25	0	0	14	10	41.6667
GPR61	0	genome.wustl.edu	37	1	110086776	110086778	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	110086776	110086778	GAG	-	DEL	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	in_frame_del	c.1132_1134	p.E379in_frame_del	1.000:1.000:1.000	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				54	0	0	38	24	38.7097
GSTM5	0	genome.wustl.edu	37	1	110256213	110256213	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	110256213	110256213	G	-	DEL	GSTM5	ENST00000492718	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	GSTM5	HGNC	ENSG00000134201				132	0	0	74	33	30.8411
MASP2	0	genome.wustl.edu	37	1	11097818	11097818	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	11097818	11097818	C	-	DEL	MASP2	ENST00000400897	human	ensembl	74_37	-1	known	frame_shift_del	c.940	p.V314fs	0.976	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724				161	0	0	100	47	31.9728
TTLL10	0	genome.wustl.edu	37	1	1116222	1116223	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1116222	1116223	-	G	INS	TTLL10	ENST00000379289	human	ensembl	74_37	+1	known	frame_shift_ins	c.737_738	p.V249fs	0.000:0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL10	HGNC	ENSG00000162571				14	0	0	5	2	28.5714
SYCP1	0	genome.wustl.edu	37	1	115537601	115537601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	115537601	115537601	A	-	DEL	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	frame_shift_del	c.2892	p.K967fs	1.000	NULL	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				54	0	0	41	27	39.7059
SPAG17	0	genome.wustl.edu	37	1	118567980	118567980	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	118567980	118567980	G	-	DEL	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	frame_shift_del	c.3790	p.Q1264fs	1.000	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				132	0	0	53	68	56.1983
DVL1	0	genome.wustl.edu	37	1	1273434	1273434	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1273434	1273434	G	-	DEL	DVL1	ENST00000378888	human	ensembl	74_37	-1	known	frame_shift_del	c.1637	p.P546fs	0.998	pfam_Dishevelled_C-dom	pfam_Dishevelled_C-dom,pfam_DIX,pfam_Dishevelled_protein_dom,pfam_PDZ,pfam_DEP_dom,superfamily_PDZ,smart_DIX,smart_PDZ,smart_DEP_dom,pfscan_DEP_dom,pfscan_DIX,pfscan_PDZ,prints_Dishevelled_fam	-	no_errors	DVL1	HGNC	ENSG00000107404				44	0	0	28	12	30
MXRA8	0	genome.wustl.edu	37	1	1290110	1290110	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	1290110	1290110	G	-	DEL	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.R301fs	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576				28	0	0	12	8	40
PDE4DIP	0	genome.wustl.edu	37	1	144877213	144877213	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	144877213	144877213	T	-	DEL	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	frame_shift_del	c.4474	p.I1492fs	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104				179	0	0	149	34	18.5792
GJA5	0	genome.wustl.edu	37	1	147230552	147230552	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	147230552	147230552	G	-	DEL	GJA5	ENST00000271348	human	ensembl	74_37	-1	known	frame_shift_del	c.795	p.D266fs	0.185	prints_Connexin40	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140				98	0	0	82	36	30.5085
MTMR11	0	genome.wustl.edu	37	1	149902648	149902648	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	149902648	149902648	A	-	DEL	MTMR11	ENST00000492824	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914				18	0	0	17	6	26.087
RPRD2	0	genome.wustl.edu	37	1	150445908	150445908	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	150445908	150445908	T	-	DEL	RPRD2	ENST00000492220	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.276	-	-	-	no_errors	RPRD2	HGNC	ENSG00000163125				11	0	0	5	5	50
SETDB1	0	genome.wustl.edu	37	1	150917623	150917624	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	150917623	150917624	-	G	INS	SETDB1	ENST00000368962	human	ensembl	74_37	+1	known	frame_shift_ins	c.1179_1180	p.T396fs	0.000:0.000	NULL	smart_Tudor	-	no_errors	SETDB1	HGNC	ENSG00000143379				18	0	0	15	5	25
ZNF687	0	genome.wustl.edu	37	1	151261988	151261988	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	151261988	151261988	A	-	DEL	ZNF687	ENST00000324048	human	ensembl	74_37	+1	known	frame_shift_del	c.2606	p.R871fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF687	HGNC	ENSG00000143373				99	0	0	53	33	38.3721
SLC27A3	0	genome.wustl.edu	37	1	153751860	153751860	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	153751860	153751860	C	-	DEL	SLC27A3	ENST00000368661	human	ensembl	74_37	+1	known	frame_shift_del	c.1927	p.H645fs	0.247	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554				95	0	0	71	30	29.703
DENND4B	0	genome.wustl.edu	37	1	153906026	153906026	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	153906026	153906026	G	-	DEL	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	frame_shift_del	c.3263	p.P1088fs	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				39	0	0	20	9	31.0345
DENND4B	0	genome.wustl.edu	37	1	153907279	153907281	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	153907279	153907281	CTG	-	DEL	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	in_frame_del	c.2730_2728	p.Q910in_frame_del	0.792:0.815:0.846	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837				30	0	0	25	15	37.5
RAB13	0	genome.wustl.edu	37	1	153955602	153955603	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	153955602	153955603	AA	-	DEL	RAB13	ENST00000462680	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029:0.027	-	-	-	no_errors	RAB13	HGNC	ENSG00000143545				53	0	0	35	19	35.1852
TPM3	0	genome.wustl.edu	37	1	154143243	154143243	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	154143243	154143243	C	-	DEL	TPM3	ENST00000469717	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TPM3	HGNC	ENSG00000143549				24	0	0	21	14	40
UBE2Q1	0	genome.wustl.edu	37	1	154524457	154524458	+	Splice_Site	INS	-	-	GA			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	154524457	154524458	-	GA	INS	UBE2Q1	ENST00000292211	human	ensembl	74_37	-1	known	splice_site_ins	c.967-3_967-2	e9-2	1.000:0.187	-	-	-	no_errors	UBE2Q1	HGNC	ENSG00000160714				59	0	0	64	18	21.9512
DCST2	0	genome.wustl.edu	37	1	155006137	155006137	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155006137	155006137	C	-	DEL	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	frame_shift_del	c.41	p.G14fs	0.000	NULL	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354				72	0	0	54	21	28
THBS3	0	genome.wustl.edu	37	1	155172646	155172646	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155172646	155172646	G	-	DEL	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	frame_shift_del	c.914	p.P305fs	0.150	smart_EG-like_dom	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231				105	0	0	62	24	27.907
FAM189B	0	genome.wustl.edu	37	1	155224231	155224232	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155224231	155224232	-	C	INS	FAM189B	ENST00000361361	human	ensembl	74_37	-1	known	frame_shift_ins	c.242_241	p.V81fs	1.000:1.000	pfam_CD20-like	pfam_CD20-like	-	no_errors	FAM189B	HGNC	ENSG00000160767				126	0	0	57	41	41.8367
RUSC1-AS1	0	genome.wustl.edu	37	1	155291076	155291076	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155291076	155291076	C	-	DEL	RUSC1-AS1	ENST00000446880	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RUSC1-AS1	HGNC	ENSG00000225855				22	0	0	25	7	21.875
RUSC1	0	genome.wustl.edu	37	1	155296883	155296883	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155296883	155296883	G	-	DEL	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	frame_shift_del	c.2374	p.G793fs	0.767	NULL	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753				126	0	0	89	37	29.3651
KIAA0907	0	genome.wustl.edu	37	1	155891720	155891720	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	155891720	155891720	G	-	DEL	KIAA0907	ENST00000483237	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIAA0907	HGNC	ENSG00000132680				30	0	0	17	6	26.087
NES	0	genome.wustl.edu	37	1	156642804	156642804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	156642804	156642804	G	-	DEL	NES	ENST00000368223	human	ensembl	74_37	-1	known	frame_shift_del	c.1176	p.T393fs	0.087	NULL	pfam_IF	-	no_errors	NES	HGNC	ENSG00000132688				217	0	0	147	72	32.8767
NCSTN	0	genome.wustl.edu	37	1	160313199	160313199	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	160313199	160313199	G	-	DEL	NCSTN	ENST00000294785	human	ensembl	74_37	+1	known	frame_shift_del	c.13	p.G6fs	0.915	NULL	pfam_Nicastrin	-	no_errors	NCSTN	HGNC	ENSG00000162736				30	0	0	28	7	20
KLHDC9	0	genome.wustl.edu	37	1	161068706	161068706	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	161068706	161068706	C	-	DEL	KLHDC9	ENST00000368011	human	ensembl	74_37	+1	known	frame_shift_del	c.381	p.A130fs	0.998	superfamily_Gal_Oxase/kelch_b-propeller	superfamily_Gal_Oxase/kelch_b-propeller	-	no_errors	KLHDC9	HGNC	ENSG00000162755				13	0	0	6	4	40
USP21	0	genome.wustl.edu	37	1	161134660	161134660	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	161134660	161134660	A	-	DEL	USP21	ENST00000289865	human	ensembl	74_37	+1	known	frame_shift_del	c.1420	p.S476fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP21	HGNC	ENSG00000143258				102	0	0	47	10	17.5439
ALDH9A1	0	genome.wustl.edu	37	1	165634376	165634376	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	165634376	165634376	A	-	DEL	ALDH9A1	ENST00000463610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ALDH9A1	HGNC	ENSG00000143149				34	0	0	11	18	62.069
TMCO1	0	genome.wustl.edu	37	1	165737430	165737430	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	165737430	165737430	T	-	DEL	TMCO1	ENST00000367881	human	ensembl	74_37	-1	known	frame_shift_del	c.300	p.K100fs	0.998	pfam_DUF106_TM	pfam_DUF106_TM	-	no_errors	TMCO1	HGNC	ENSG00000143183				40	0	0	25	11	30.5556
CCDC181	0	genome.wustl.edu	37	1	169366580	169366580	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	169366580	169366580	T	-	DEL	CCDC181	ENST00000367806	human	ensembl	74_37	-1	known	frame_shift_del	c.1265	p.K422fs	1.000	NULL	NULL	-	no_errors	CCDC181	HGNC	ENSG00000117477				32	0	0	30	18	37.5
SLC9C2	0	genome.wustl.edu	37	1	173551149	173551150	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	173551149	173551150	-	A	INS	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	splice_site_ins	c.641-3_641-2	e6-2	0.657:0.060	-	-	-	no_errors	SLC9C2	HGNC	ENSG00000162753				22	0	0	18	12	40
SOAT1	0	genome.wustl.edu	37	1	179304653	179304653	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	179304653	179304653	T	-	DEL	SOAT1	ENST00000367619	human	ensembl	74_37	+1	known	frame_shift_del	c.190	p.F65fs	0.997	NULL	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252				46	0	0	49	18	26.8657
CFH	0	genome.wustl.edu	37	1	196642420	196642420	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	196642420	196642420	T	-	DEL	CFH	ENST00000496761	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CFH	HGNC	ENSG00000000971				9	0	0	2	6	75
RNPEP	0	genome.wustl.edu	37	1	201966518	201966518	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	201966518	201966518	C	-	DEL	RNPEP	ENST00000295640	human	ensembl	74_37	+1	known	frame_shift_del	c.926	p.C311fs	0.999	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,pfam_Peptidase_M1_C,superfamily_ARM-type_fold,prints_Peptidase_M1_N	-	no_errors	RNPEP	HGNC	ENSG00000176393				154	0	0	99	44	30.7692
PTPN7	0	genome.wustl.edu	37	1	202128509	202128510	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	202128509	202128510	-	C	INS	PTPN7	ENST00000309017	human	ensembl	74_37	-1	known	frame_shift_ins	c.337_336	p.R112fs	0.041:0.040	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_KIM-con,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN7	HGNC	ENSG00000143851				85	0	0	50	25	33.3333
ZC3H11A	0	genome.wustl.edu	37	1	203816504	203816504	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	203816504	203816504	A	-	DEL	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	frame_shift_del	c.1235	p.K414fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673				56	0	0	43	22	33.8462
PLEKHA6	0	genome.wustl.edu	37	1	204210890	204210891	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	204210890	204210891	-	G	INS	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	frame_shift_ins	c.2225_2224	p.L742fs	0.671:0.669	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				120	0	0	69	31	31
IKBKE	0	genome.wustl.edu	37	1	206652330	206652330	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	206652330	206652330	C	-	DEL	IKBKE	ENST00000367120	human	ensembl	74_37	+1	known	frame_shift_del	c.1037	p.R348fs	0.936	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466				193	1	0.515464	142	32	18.3908
CD34	0	genome.wustl.edu	37	1	208063101	208063102	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	208063101	208063102	AA	-	DEL	CD34	ENST00000367036	human	ensembl	74_37	-1	known	frame_shift_del	c.82_81	p.S28fs	0.000:0.000	NULL	pfam_CD34/Podocalyxin,prints_CD34	-	no_errors	CD34	HGNC	ENSG00000174059				31	0	0	12	9	42.8571
CAMK2N1	0	genome.wustl.edu	37	1	20810079	20810079	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	20810079	20810079	T	-	DEL	CAMK2N1	ENST00000489020	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.949	-	-	-	no_errors	CAMK2N1	HGNC	ENSG00000162545				39	0	0	21	17	44.7368
PLXNA2	0	genome.wustl.edu	37	1	208315786	208315787	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	208315786	208315787	-	G	INS	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	frame_shift_ins	c.1394_1393	p.H465fs	1.000:1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356				183	0	0	107	25	18.9394
KCTD3	0	genome.wustl.edu	37	1	215747171	215747171	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	215747171	215747171	T	-	DEL	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	frame_shift_del	c.126	p.S45fs	0.199	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636				145	0	0	90	44	32.8358
ALPL	0	genome.wustl.edu	37	1	21902394	21902394	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	21902394	21902394	C	-	DEL	ALPL	ENST00000374832	human	ensembl	74_37	+1	known	frame_shift_del	c.1166	p.R391fs	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551				205	0	0	130	49	27.3743
USP48	0	genome.wustl.edu	37	1	22033386	22033388	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	22033386	22033388	AAA	-	DEL	USP48	ENST00000529637	human	ensembl	74_37	-1	novel	in_frame_del	c.1975_1973	p.F658in_frame_del	0.000:0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686				36	0	0	33	11	25
COG2	0	genome.wustl.edu	37	1	230798959	230798959	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	230798959	230798959	A	-	DEL	COG2	ENST00000366669	human	ensembl	74_37	+1	known	frame_shift_del	c.373	p.K127fs	0.935	pfam_COG_su2_N	pfam_COG_complex_COG2_C,pfam_COG_su2_N	-	no_errors	COG2	HGNC	ENSG00000135775				66	0	0	43	16	27.1186
C1orf131	0	genome.wustl.edu	37	1	231362468	231362468	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	231362468	231362468	C	-	DEL	C1orf131	ENST00000495795	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf131	HGNC	ENSG00000143633				73	0	0	67	24	26.3736
TARBP1	0	genome.wustl.edu	37	1	234563382	234563382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	234563382	234563382	T	-	DEL	TARBP1	ENST00000040877	human	ensembl	74_37	-1	novel	frame_shift_del	c.3191	p.N1064fs	0.715	superfamily_ARM-type_fold	pfam_SpoU_MeTrfase,superfamily_ARM-type_fold	-	no_errors	TARBP1	HGNC	ENSG00000059588				43	0	0	28	10	26.3158
LYST	0	genome.wustl.edu	37	1	235922628	235922631	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	ACAA	ACAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	235922628	235922631	ACAA	-	DEL	LYST	ENST00000389793	human	ensembl	74_37	-1	known	frame_shift_del	c.6525_6522	p.C2175fs	1.000:1.000:0.999:0.857	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669				131	0	0	93	32	25.6
HNRNPR	0	genome.wustl.edu	37	1	23636875	23636876	+	RNA	DEL	TT	TT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	23636875	23636876	TT	-	DEL	HNRNPR	ENST00000476660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.936:0.942	-	-	-	no_errors	HNRNPR	HGNC	ENSG00000125944				97	0	0	58	22	27.5
FMN2	0	genome.wustl.edu	37	1	240601362	240601362	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	240601362	240601362	T	-	DEL	FMN2	ENST00000319653	human	ensembl	74_37	+1	known	frame_shift_del	c.4912	p.L1639fs	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_Formin_homology_1,smart_FH2_Formin,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816				127	0	0	111	27	19.5652
SCCPDH	0	genome.wustl.edu	37	1	246923498	246923499	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	246923498	246923499	-	T	INS	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	frame_shift_ins	c.959_960	p.S322fs	0.998:1.000	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653				55	0	0	41	15	26.7857
ZNF496	0	genome.wustl.edu	37	1	247486457	247486457	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	247486457	247486457	G	-	DEL	ZNF496	ENST00000366498	human	ensembl	74_37	-1	known	frame_shift_del	c.650	p.P217fs	0.998	NULL	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714				69	0	0	57	27	32.1429
TMEM57	0	genome.wustl.edu	37	1	25775375	25775375	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	25775375	25775375	T	-	DEL	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	frame_shift_del	c.299	p.F102fs	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178				52	0	0	47	17	26.5625
BAI2	0	genome.wustl.edu	37	1	32201169	32201169	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	32201169	32201169	C	-	DEL	BAI2	ENST00000465256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.865	-	-	-	no_errors	BAI2	HGNC	ENSG00000121753				35	0	0	14	12	46.1538
KIAA1522	0	genome.wustl.edu	37	1	33236735	33236735	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	33236735	33236735	C	-	DEL	KIAA1522	ENST00000401073	human	ensembl	74_37	+1	known	frame_shift_del	c.1955	p.L654fs	0.000	NULL	NULL	-	no_errors	KIAA1522	HGNC	ENSG00000162522				137	0	0	100	52	34.2105
YARS	0	genome.wustl.edu	37	1	33263483	33263483	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	33263483	33263483	T	-	DEL	YARS	ENST00000466052	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	YARS	HGNC	ENSG00000134684				19	0	0	19	11	36.6667
MEGF6	0	genome.wustl.edu	37	1	3410404	3410404	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	3410404	3410404	C	-	DEL	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	frame_shift_del	c.4318	p.A1440fs	0.000	smart_EG-like_dom,smart_EGF_laminin	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591				14	0	0	4	3	42.8571
DLGAP3	0	genome.wustl.edu	37	1	35370731	35370731	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	35370731	35370731	C	-	DEL	DLGAP3	ENST00000235180	human	ensembl	74_37	-1	known	frame_shift_del	c.254	p.G85fs	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP3	HGNC	ENSG00000116544				12	0	0	6	4	40
MAP7D1	0	genome.wustl.edu	37	1	36636626	36636626	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	36636626	36636626	C	-	DEL	MAP7D1	ENST00000373151	human	ensembl	74_37	+1	known	frame_shift_del	c.101	p.P36fs	0.090	NULL	pfam_MAP7	-	no_errors	MAP7D1	HGNC	ENSG00000116871				94	0	0	71	21	22.8261
C1orf109	0	genome.wustl.edu	37	1	38148850	38148850	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	38148850	38148850	A	-	DEL	C1orf109	ENST00000609516	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C1orf109	HGNC	ENSG00000116922				123	0	0	75	36	32.4324
CTPS1	0	genome.wustl.edu	37	1	41467918	41467919	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	41467918	41467919	-	T	INS	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	frame_shift_ins	c.1181_1182	p.L396fs	1.000:0.993	pfam_GATASE,pfam_Peptidase_C26,tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS1	HGNC	ENSG00000171793				83	0	0	46	36	43.9024
MAST2	0	genome.wustl.edu	37	1	46494559	46494559	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	46494559	46494559	T	-	DEL	MAST2	ENST00000361297	human	ensembl	74_37	+1	known	frame_shift_del	c.2172	p.F726fs	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST2	HGNC	ENSG00000086015				276	1	0.361011	184	69	27.2727
FAAH	0	genome.wustl.edu	37	1	46871370	46871370	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	46871370	46871370	C	-	DEL	FAAH	ENST00000243167	human	ensembl	74_37	+1	known	frame_shift_del	c.689	p.L232fs	1.000	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	pfam_Amidase,superfamily_Amidase_dom,pirsf_Amidase_fun	-	no_errors	FAAH	HGNC	ENSG00000117480				157	0	0	84	46	35.3846
HOOK1	0	genome.wustl.edu	37	1	60314140	60314140	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	60314140	60314140	A	-	DEL	HOOK1	ENST00000371208	human	ensembl	74_37	+1	known	frame_shift_del	c.1083	p.A364fs	0.150	pfam_Hook-related_fam	pfam_Hook-related_fam,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709				106	0	0	82	25	23.3645
RPL22	0	genome.wustl.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6257785	6257785	T	-	DEL	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_del	c.44	p.K15fs	1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251				44	0	0	30	18	37.5
KANK4	0	genome.wustl.edu	37	1	62740426	62740427	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	62740426	62740427	-	G	INS	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	frame_shift_ins	c.350_349	p.Q117fs	0.000:0.001	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854				83	0	0	63	24	27.5862
DOCK7	0	genome.wustl.edu	37	1	62941104	62941104	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	62941104	62941104	A	-	DEL	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641				24	0	0	18	8	30.7692
ALG6	0	genome.wustl.edu	37	1	63836751	63836751	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	63836751	63836751	A	-	DEL	ALG6	ENST00000487136	human	ensembl	74_37	+1	known	frame_shift_del	c.103	p.T38fs	0.000	NULL	NULL	-	no_errors	ALG6	HGNC	ENSG00000088035				50	0	0	33	14	29.7872
RAVER2	0	genome.wustl.edu	37	1	65296646	65296647	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	65296646	65296647	-	A	INS	RAVER2	ENST00000294428	human	ensembl	74_37	+1	known	frame_shift_ins	c.2054_2055	p.K688fs	0.998:0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER2	HGNC	ENSG00000162437				158	0	0	114	48	29.6296
NOL9	0	genome.wustl.edu	37	1	6605171	6605171	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	6605171	6605171	T	-	DEL	NOL9	ENST00000377705	human	ensembl	74_37	-1	known	frame_shift_del	c.814	p.R272fs	0.002	NULL	pfam_Pre-mRNA_cleavage_cplxII_Clp1,superfamily_P-loop_NTPase	-	no_errors	NOL9	HGNC	ENSG00000162408				105	0	0	76	41	35.0427
LRRC7	0	genome.wustl.edu	37	1	70504693	70504693	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	70504693	70504693	A	-	DEL	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	frame_shift_del	c.3072	p.V1027fs	0.001	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				37	0	0	21	13	38.2353
ZRANB2	0	genome.wustl.edu	37	1	71544212	71544212	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	71544212	71544212	C	-	DEL	ZRANB2	ENST00000370920	human	ensembl	74_37	-1	known	frame_shift_del	c.146	p.G49fs	1.000	pirsf_UCP037956_Znf_RanB2	pfam_Znf_RanBP2,smart_Znf_RanBP2,pirsf_UCP037956_Znf_RanB2,pfscan_Znf_RanBP2	-	no_errors	ZRANB2	HGNC	ENSG00000132485				136	0	0	115	42	26.7516
USP33	0	genome.wustl.edu	37	1	78189100	78189100	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	78189100	78189100	T	-	DEL	USP33	ENST00000357428	human	ensembl	74_37	-1	known	frame_shift_del	c.1398	p.K466fs	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP33	HGNC	ENSG00000077254				17	0	0	21	6	22.2222
PKN2	0	genome.wustl.edu	37	1	89206848	89206848	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	89206848	89206848	A	-	DEL	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	frame_shift_del	c.226	p.S78fs	1.000	pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243				30	0	0	15	21	58.3333
TGFBR3	0	genome.wustl.edu	37	1	92177814	92177814	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	92177814	92177814	G	-	DEL	TGFBR3	ENST00000212355	human	ensembl	74_37	-1	known	frame_shift_del	c.2152	p.Q718fs	0.274	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	TGFBR3	HGNC	ENSG00000069702				43	0	0	23	11	32.3529
EVI5	0	genome.wustl.edu	37	1	93073081	93073081	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	93073081	93073081	A	-	DEL	EVI5	ENST00000492513	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EVI5	HGNC	ENSG00000067208				24	0	0	5	4	44.4444
MTF2	0	genome.wustl.edu	37	1	93594818	93594818	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	93594818	93594818	T	-	DEL	MTF2	ENST00000489480	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.815	-	-	-	no_errors	MTF2	HGNC	ENSG00000143033				31	0	0	33	17	34
ABCD3	0	genome.wustl.edu	37	1	94982785	94982785	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	1	94982785	94982785	A	-	DEL	ABCD3	ENST00000464165	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ABCD3	HGNC	ENSG00000117528				22	0	0	16	5	23.8095
CNNM1	0	genome.wustl.edu	37	10	101089318	101089318	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	101089318	101089318	G	-	DEL	CNNM1	ENST00000356713	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.G60fs	1.000	NULL	pfam_DUF21,pfam_CBS_dom	-	no_errors	CNNM1	HGNC	ENSG00000119946				11	0	0	5	6	54.5455
CWF19L1	0	genome.wustl.edu	37	10	101992924	101992926	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	101992924	101992926	AAA	-	DEL	CWF19L1	ENST00000468709	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.167:0.180:0.200	-	-	-	no_errors	CWF19L1	HGNC	ENSG00000095485				59	0	0	27	24	47.0588
PDZD7	0	genome.wustl.edu	37	10	102789811	102789811	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	102789811	102789811	G	-	DEL	PDZD7	ENST00000370215	human	ensembl	74_37	-1	known	frame_shift_del	c.166	p.R56fs	0.998	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD7	HGNC	ENSG00000186862				156	0	0	95	31	24.6032
HPS6	0	genome.wustl.edu	37	10	103827533	103827533	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	103827533	103827533	C	-	DEL	HPS6	ENST00000299238	human	ensembl	74_37	+1	known	frame_shift_del	c.2302	p.P769fs	1.000	pirsf_BLOC-2_complex_Hps6_subunit	pirsf_BLOC-2_complex_Hps6_subunit	-	no_errors	HPS6	HGNC	ENSG00000166189				115	0	0	64	20	23.8095
VTI1A	0	genome.wustl.edu	37	10	114428018	114428019	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	114428018	114428019	AG	-	DEL	VTI1A	ENST00000393077	human	ensembl	74_37	+1	known	frame_shift_del	c.469_470	p.E158fs	1.000:1.000	smart_T_SNARE_dom	pfam_Vesicle_trsprt_v-SNARE_N,superfamily_t-SNARE,smart_T_SNARE_dom	-	no_errors	VTI1A	HGNC	ENSG00000151532				50	0	0	36	13	26.5306
NHLRC2	0	genome.wustl.edu	37	10	115662308	115662308	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	115662308	115662308	A	-	DEL	NHLRC2	ENST00000369301	human	ensembl	74_37	+1	known	frame_shift_del	c.1450	p.R486fs	0.833	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,superfamily_Thioredoxin-like_fold,pfscan_NHL_repeat_subgr	-	no_errors	NHLRC2	HGNC	ENSG00000196865				114	0	0	106	40	27.3973
KIAA1598	0	genome.wustl.edu	37	10	118708437	118708437	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	118708437	118708437	T	-	DEL	KIAA1598	ENST00000392903	human	ensembl	74_37	-1	known	frame_shift_del	c.606	p.K202fs	1.000	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164				23	0	0	15	9	37.5
CHST15	0	genome.wustl.edu	37	10	125780753	125780755	+	In_Frame_Del	DEL	GGG	GGG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GGG	GGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	125780753	125780755	GGG	-	DEL	CHST15	ENST00000421115	human	ensembl	74_37	-1	known	in_frame_del	c.1366_1364	p.P455in_frame_del	0.985:0.982:0.979	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	CHST15	HGNC	ENSG00000182022				19	0	0	11	11	50
ZRANB1	0	genome.wustl.edu	37	10	126673561	126673561	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	126673561	126673561	A	-	DEL	ZRANB1	ENST00000359653	human	ensembl	74_37	+1	known	frame_shift_del	c.2127	p.*709fs	0.994	NULL	pfam_OTU,pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_OTU,pfscan_Znf_RanBP2	-	no_errors	ZRANB1	HGNC	ENSG00000019995				16	0	0	20	5	20
NKX6-2	0	genome.wustl.edu	37	10	134598431	134598431	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	134598431	134598431	C	-	DEL	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	frame_shift_del	c.823	p.D275fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826				36	0	0	19	10	34.4828
CUBN	0	genome.wustl.edu	37	10	17107573	17107574	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	17107573	17107574	-	A	INS	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	frame_shift_ins	c.3073_3072	p.V1024fs	1.000:0.870	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				186	0	0	128	53	29.2818
PTPLA	0	genome.wustl.edu	37	10	17636370	17636370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	17636370	17636370	A	-	DEL	PTPLA	ENST00000361271	human	ensembl	74_37	-1	known	frame_shift_del	c.618	p.F206fs	1.000	pfam_Tyr_Pase-like_PTPLA	pfam_Tyr_Pase-like_PTPLA	-	no_errors	PTPLA	HGNC	ENSG00000165996				66	0	0	49	17	25.7576
101928757	0	genome.wustl.edu	37	10	17908612	17908612	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	17908612	17908612	G	-	DEL	101928757	ENST00000331429	human	ensembl	74_37	+1	novel	frame_shift_del	c.1825	p.G610fs	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1L1	Clone_based_vega_gene	ENSG00000183748				184	0	0	158	11	6.50888
PTCHD3	0	genome.wustl.edu	37	10	27687763	27687763	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	27687763	27687763	A	-	DEL	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	frame_shift_del	c.1764	p.F588fs	0.992	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077				52	0	0	31	23	42.5926
SVIL	0	genome.wustl.edu	37	10	29760116	29760116	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	29760116	29760116	C	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.5586	p.M1863fs	0.474	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321				20	0	0	16	6	27.2727
C10orf68	0	genome.wustl.edu	37	10	33018277	33018277	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	33018277	33018277	A	-	DEL	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	frame_shift_del	c.718	p.K242fs	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076				65	0	0	41	20	32.7869
ANK3	0	genome.wustl.edu	37	10	61823946	61823946	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	61823946	61823946	T	-	DEL	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	frame_shift_del	c.12420	p.K4140fs	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				78	0	0	106	7	6.19469
CDK1	0	genome.wustl.edu	37	10	62551805	62551805	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	62551805	62551805	T	-	DEL	CDK1	ENST00000395284	human	ensembl	74_37	+1	known	frame_shift_del	c.647	p.F217fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK1	HGNC	ENSG00000170312				43	0	0	53	10	15.873
TET1	0	genome.wustl.edu	37	10	70332153	70332153	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	70332153	70332153	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.K22fs	0.855	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336				30	0	0	17	7	29.1667
CCAR1	0	genome.wustl.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	70509285	70509286	GA	-	DEL	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	frame_shift_del	c.961_962	p.R324fs	1.000:1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339				30	0	0	19	16	45.7143
ADAMTS14	0	genome.wustl.edu	37	10	72520485	72520485	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	72520485	72520485	C	-	DEL	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	frame_shift_del	c.3557	p.1190fs	0.109	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				70	0	0	55	15	21.4286
KCNMA1	0	genome.wustl.edu	37	10	78729786	78729786	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	78729786	78729786	T	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2318	p.K773fs	1.000	prints_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113				67	0	0	40	17	29.8246
ZMIZ1	0	genome.wustl.edu	37	10	81067262	81067262	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	81067262	81067262	C	-	DEL	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	frame_shift_del	c.2769	p.P925fs	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				69	0	0	60	18	23.0769
ZMIZ1	0	genome.wustl.edu	37	10	81072446	81072446	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	81072446	81072446	C	-	DEL	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	frame_shift_del	c.3144	p.D1051fs	0.963	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				269	0	0	182	73	28.6275
SH2D4B	0	genome.wustl.edu	37	10	82403842	82403842	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	82403842	82403842	T	-	DEL	SH2D4B	ENST00000372150	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SH2D4B	HGNC	ENSG00000178217				38	0	0	32	10	23.8095
LARP4B	0	genome.wustl.edu	37	10	890939	890939	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	890939	890939	T	-	DEL	LARP4B	ENST00000316157	human	ensembl	74_37	-1	known	frame_shift_del	c.487	p.T163fs	1.000	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	pfam_Lupus_La_RNA-bd,smart_Lupus_La_RNA-bd,pfscan_Lupus_La_RNA-bd	-	no_errors	LARP4B	HGNC	ENSG00000107929				92	0	0	61	34	35.7895
KIF20B	0	genome.wustl.edu	37	10	91514406	91514406	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	91514406	91514406	T	-	DEL	KIF20B	ENST00000416354	human	ensembl	74_37	+1	known	frame_shift_del	c.4569	p.F1525fs	0.322	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF20B	HGNC	ENSG00000138182				86	0	0	52	32	38.0952
HECTD2	0	genome.wustl.edu	37	10	93247481	93247481	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	93247481	93247481	A	-	DEL	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	1.000	NULL	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338				132	0	0	106	39	26.8966
IDE	0	genome.wustl.edu	37	10	94243044	94243045	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	94243044	94243045	-	A	INS	IDE	ENST00000265986	human	ensembl	74_37	-1	known	frame_shift_ins	c.1707_1706	p.L569fs	1.000:1.000	superfamily_Metalloenz_LuxS/M16	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_LuxS/M16	-	no_errors	IDE	HGNC	ENSG00000119912				33	0	0	36	6	14.2857
ZNF518A	0	genome.wustl.edu	37	10	97920218	97920218	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	97920218	97920218	A	-	DEL	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.630	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				83	0	0	61	28	31.4607
TM9SF3	0	genome.wustl.edu	37	10	98336475	98336475	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	98336475	98336475	T	-	DEL	TM9SF3	ENST00000371142	human	ensembl	74_37	-1	known	frame_shift_del	c.214	p.S72fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF3	HGNC	ENSG00000077147				132	1	0.75188	91	30	24.7934
C10orf12	0	genome.wustl.edu	37	10	98742785	98742785	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	10	98742785	98742785	A	-	DEL	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	frame_shift_del	c.1638	p.E549fs	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640				95	0	0	59	31	34.4444
MMP10	0	genome.wustl.edu	37	11	102647146	102647146	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	102647146	102647146	G	-	DEL	MMP10	ENST00000279441	human	ensembl	74_37	-1	known	frame_shift_del	c.797	p.P266fs	0.002	pirsf_Pept_M10A_Metazoans	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP10	HGNC	ENSG00000166670				62	0	0	40	27	40.2985
LOC643733	0	genome.wustl.edu	37	11	104776330	104776330	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	104776330	104776330	T	-	DEL	LOC643733	ENST00000532510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-693N9.2	Clone_based_vega_gene	ENSG00000235505				20	0	0	8	7	46.6667
C11orf87	0	genome.wustl.edu	37	11	109294696	109294696	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	109294696	109294696	G	-	DEL	C11orf87	ENST00000327419	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.L115fs	1.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	C11orf87	HGNC	ENSG00000185742				115	0	0	69	32	31.6832
ARHGAP20	0	genome.wustl.edu	37	11	110582936	110582936	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	110582936	110582936	G	-	DEL	ARHGAP20	ENST00000260283	human	ensembl	74_37	-1	known	frame_shift_del	c.19	p.Q7fs	1.000	NULL	pfam_RhoGAP_dom,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Ras-assoc,pfscan_RhoGAP_dom	-	no_errors	ARHGAP20	HGNC	ENSG00000137727				16	0	0	8	3	27.2727
C11orf57	0	genome.wustl.edu	37	11	111953459	111953460	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	111953459	111953460	-	A	INS	C11orf57	ENST00000393047	human	ensembl	74_37	+1	known	frame_shift_ins	c.645_646	p.P217fs	0.987:0.988	NULL	NULL	-	no_errors	C11orf57	HGNC	ENSG00000150776				81	0	0	53	28	34.5679
PCSK7	0	genome.wustl.edu	37	11	117095431	117095431	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	117095431	117095431	G	-	DEL	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	frame_shift_del	c.901	p.H301fs	1.000	pfam_Peptidase_S8/S53_dom,superfamily_Peptidase_S8/S53_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				391	0	0	265	92	25.7703
FOXR1	0	genome.wustl.edu	37	11	118850287	118850287	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	118850287	118850287	C	-	DEL	FOXR1	ENST00000317011	human	ensembl	74_37	+1	known	frame_shift_del	c.520	p.P175fs	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR1	HGNC	ENSG00000176302				104	0	0	94	40	29.8507
MFRP	0	genome.wustl.edu	37	11	119213688	119213688	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	119213688	119213688	G	-	DEL	MFRP	ENST00000449574	human	ensembl	74_37	-1	known	frame_shift_del	c.1150	p.H384fs	0.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Frizzled_dom,pfam_LDrepeatLR_classA_rpt,superfamily_CUB_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Frizzled_dom,pfscan_CUB_dom,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	MFRP	HGNC	ENSG00000235718				20	0	0	7	4	36.3636
C11orf63	0	genome.wustl.edu	37	11	122775058	122775058	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	122775058	122775058	A	-	DEL	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	frame_shift_del	c.770	p.N259fs	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944				271	0	0	153	86	35.9833
MUC5B	0	genome.wustl.edu	37	11	1251778	1251780	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	1251778	1251780	ACA	-	DEL	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	in_frame_del	c.1427_1429	p.N477in_frame_del	0.971:0.891:0.458	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				38	0	0	28	8	22.2222
SRPR	0	genome.wustl.edu	37	11	126136150	126136150	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	126136150	126136150	C	-	DEL	SRPR	ENST00000332118	human	ensembl	74_37	-1	known	frame_shift_del	c.864	p.Q289fs	0.993	pfam_Sig_recog_particle_rcpt_asu_N	pfam_Sig_recog_particle_rcpt_asu_N,pfam_SRP54_GTPase_dom,pfam_ArgK,pfam_CobQ/CobB/MinD/ParA_Nub-bd_dom,pfam_Signal_recog_particl_SRP54_hlx,superfamily_Longin-like_dom,superfamily_P-loop_NTPase,superfamily_Signal_recog_particl_SRP54_hlx,smart_Signal_recog_particl_SRP54_hlx,smart_AAA+_ATPase,smart_SRP54_GTPase_dom	-	no_errors	SRPR	HGNC	ENSG00000182934				158	1	0.628931	118	39	24.8408
NCAPD3	0	genome.wustl.edu	37	11	134048586	134048586	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	134048586	134048586	G	-	DEL	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	frame_shift_del	c.2725	p.Q909fs	1.000	superfamily_ARM-type_fold,pirsf_NCAPD3	superfamily_ARM-type_fold,pirsf_NCAPD3	-	no_errors	NCAPD3	HGNC	ENSG00000151503				102	0	0	61	21	25.6098
USH1C	0	genome.wustl.edu	37	11	17531251	17531251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	17531251	17531251	G	-	DEL	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	frame_shift_del	c.1665	p.K556fs	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611				27	0	0	17	9	34.6154
SAAL1	0	genome.wustl.edu	37	11	18105214	18105214	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	18105214	18105214	T	-	DEL	SAAL1	ENST00000524803	human	ensembl	74_37	-1	known	frame_shift_del	c.1107	p.K369fs	0.999	NULL	superfamily_ARM-type_fold	-	no_errors	SAAL1	HGNC	ENSG00000166788				54	0	0	38	29	43.2836
NAV2	0	genome.wustl.edu	37	11	19955389	19955389	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	19955389	19955389	A	-	DEL	NAV2	ENST00000396087	human	ensembl	74_37	+1	known	frame_shift_del	c.1668	p.K558fs	0.723	NULL	pfam_CH-domain,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV2	HGNC	ENSG00000166833				149	0	0	90	34	27.4194
QSER1	0	genome.wustl.edu	37	11	32990615	32990615	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	32990615	32990615	A	-	DEL	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	frame_shift_del	c.4744	p.I1584fs	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				86	0	0	94	42	30.8824
QSER1	0	genome.wustl.edu	37	11	32997895	32997895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	32997895	32997895	A	-	DEL	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	frame_shift_del	c.5083	p.N1697fs	1.000	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749				32	0	0	30	16	34.7826
APIP	0	genome.wustl.edu	37	11	34904191	34904191	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	34904191	34904191	A	-	DEL	APIP	ENST00000527830	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.918	-	-	-	no_errors	APIP	HGNC	ENSG00000149089				18	0	0	17	7	29.1667
LRP4	0	genome.wustl.edu	37	11	46921056	46921057	+	Splice_Site	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	46921056	46921057	-	G	INS	LRP4	ENST00000378623	human	ensembl	74_37	-1	known	splice_site_ins	c.431-3_431-2	e5-2	1.000:0.994	-	-	-	no_errors	LRP4	HGNC	ENSG00000134569				134	0	0	71	33	31.7308
OR51E2	0	genome.wustl.edu	37	11	4703475	4703475	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	4703475	4703475	A	-	DEL	OR51E2	ENST00000396950	human	ensembl	74_37	-1	known	frame_shift_del	c.467	p.F156fs	0.027	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332				96	0	0	59	17	22.3684
OR52A5	0	genome.wustl.edu	37	11	5153679	5153679	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	5153679	5153679	A	-	DEL	OR52A5	ENST00000307388	human	ensembl	74_37	-1	known	frame_shift_del	c.194	p.L65fs	0.870	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52A5	HGNC	ENSG00000171944				70	0	0	58	24	29.2683
TRIM51	0	genome.wustl.edu	37	11	55653610	55653610	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	55653610	55653610	A	-	DEL	TRIM51	ENST00000449290	human	ensembl	74_37	+1	known	frame_shift_del	c.423	p.M144fs	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM51	HGNC	ENSG00000124900				43	0	0	42	10	19.2308
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815				59	0	0	39	13	25
OR5AR1	0	genome.wustl.edu	37	11	56431466	56431467	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	56431466	56431467	-	T	INS	OR5AR1	ENST00000302969	human	ensembl	74_37	+1	known	frame_shift_ins	c.305_306	p.V105fs	0.829:0.634	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AR1	HGNC	ENSG00000172459				228	0	0	165	77	31.8182
TNKS1BP1	0	genome.wustl.edu	37	11	57070218	57070219	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	57070218	57070219	-	T	INS	TNKS1BP1	ENST00000358252	human	ensembl	74_37	-1	known	frame_shift_ins	c.4398_4397	p.A1467fs	0.006:0.001	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115				9	0	0	7	4	36.3636
OR5B12	0	genome.wustl.edu	37	11	58207126	58207128	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	58207126	58207128	AGA	-	DEL	OR5B12	ENST00000302572	human	ensembl	74_37	-1	known	in_frame_del	c.499_497	p.F166in_frame_del	0.998:0.883:0.848	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR5B12	HGNC	ENSG00000172362				61	0	0	39	29	42.6471
ROM1	0	genome.wustl.edu	37	11	62381084	62381084	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	62381084	62381084	G	-	DEL	ROM1	ENST00000278833	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.L114fs	0.023	pfam_Tetraspanin/Peripherin,prints_Peripherin/rom-1	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489				41	0	0	37	13	26
SLC3A2	0	genome.wustl.edu	37	11	62649529	62649529	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	62649529	62649529	A	-	DEL	SLC3A2	ENST00000377892	human	ensembl	74_37	+1	known	frame_shift_del	c.985	p.K331fs	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	SLC3A2	HGNC	ENSG00000168003				72	0	0	62	20	24.3902
NRXN2	0	genome.wustl.edu	37	11	64375286	64375286	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64375286	64375286	G	-	DEL	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	frame_shift_del	c.4521	p.T1508fs	0.926	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076				16	0	0	7	8	53.3333
MEN1	0	genome.wustl.edu	37	11	64573118	64573118	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64573118	64573118	C	-	DEL	MEN1	ENST00000337652	human	ensembl	74_37	-1	known	frame_shift_del	c.1189	p.E397fs	0.997	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895				44	0	0	33	14	29.7872
SLC22A20	0	genome.wustl.edu	37	11	64981481	64981481	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	64981481	64981481	C	-	DEL	SLC22A20	ENST00000525264	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.963	-	-	-	no_errors	SLC22A20	HGNC	ENSG00000197847				20	0	0	14	2	12.5
RRP8	0	genome.wustl.edu	37	11	6623374	6623374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6623374	6623374	G	-	DEL	RRP8	ENST00000254605	human	ensembl	74_37	-1	known	frame_shift_del	c.171	p.S58fs	0.000	NULL	pfam_Methyltransferase-rel,pfam_Methyltransf_11	-	no_errors	RRP8	HGNC	ENSG00000132275				113	0	0	81	26	24.2991
ILK	0	genome.wustl.edu	37	11	6629392	6629392	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	6629392	6629392	C	-	DEL	ILK	ENST00000299421	human	ensembl	74_37	+1	known	frame_shift_del	c.206	p.L71fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Integrin-linked_kinase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Integrin-linked_kinase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ILK	HGNC	ENSG00000166333				92	0	0	58	28	32.5581
ADRBK1	0	genome.wustl.edu	37	11	67051287	67051287	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67051287	67051287	C	-	DEL	ADRBK1	ENST00000532611	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ADRBK1	HGNC	ENSG00000173020				43	0	0	22	15	40.5405
PPP1CA	0	genome.wustl.edu	37	11	67165933	67165933	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67165933	67165933	C	-	DEL	PPP1CA	ENST00000532446	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.080	-	-	-	no_errors	PPP1CA	HGNC	ENSG00000172531				16	0	0	5	6	54.5455
CORO1B	0	genome.wustl.edu	37	11	67209168	67209169	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67209168	67209169	GG	-	DEL	CORO1B	ENST00000545016	human	ensembl	74_37	-1	known	frame_shift_del	c.490_489	p.H164fs	0.000:0.000	NULL	pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1B	HGNC	ENSG00000172725				22	0	0	19	11	36.6667
TBX10	0	genome.wustl.edu	37	11	67402373	67402373	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	67402373	67402373	G	-	DEL	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	frame_shift_del	c.291	p.F98fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX10	HGNC	ENSG00000167800				69	0	0	42	14	25
KRTAP5-10	0	genome.wustl.edu	37	11	71277026	71277026	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	71277026	71277026	G	-	DEL	KRTAP5-10	ENST00000398531	human	ensembl	74_37	+1	known	frame_shift_del	c.393	p.G133fs	0.007	NULL	NULL	-	no_errors	KRTAP5-10	HGNC	ENSG00000204572				269	0	0	196	56	22.2222
ARAP1	0	genome.wustl.edu	37	11	72396612	72396612	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	72396612	72396612	C	-	DEL	ARAP1	ENST00000495878	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	ARAP1	HGNC	ENSG00000186635				29	0	0	16	7	30.4348
ARAP1	0	genome.wustl.edu	37	11	72423617	72423617	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	72423617	72423617	C	-	DEL	ARAP1	ENST00000393605	human	ensembl	74_37	-1	known	frame_shift_del	c.24	p.Q9fs	0.005	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP1	HGNC	ENSG00000186635				239	0	0	145	47	24.4792
EPS8L2	0	genome.wustl.edu	37	11	726965	726965	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	726965	726965	G	-	DEL	EPS8L2	ENST00000318562	human	ensembl	74_37	+1	known	frame_shift_del	c.2132	p.E713fs	0.028	NULL	pfam_PTB,pfam_SH3_domain,pfam_PTB/PI_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTB/PI_dom,smart_SH3_domain,pfscan_PTB/PI_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106				32	0	0	21	5	19.2308
POLD3	0	genome.wustl.edu	37	11	74331113	74331113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	74331113	74331113	T	-	DEL	POLD3	ENST00000263681	human	ensembl	74_37	+1	known	frame_shift_del	c.712	p.F239fs	1.000	pfam_DNA_polymerase_subunit_Cdc27	pfam_DNA_polymerase_subunit_Cdc27	-	no_errors	POLD3	HGNC	ENSG00000077514				219	0	0	190	34	15.1786
UVRAG	0	genome.wustl.edu	37	11	75694431	75694433	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	75694431	75694433	AAA	-	DEL	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	in_frame_del	c.700_702	p.K236in_frame_del	1.000:1.000:1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382				20	0	0	23	14	37.8378
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154812	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	78154811	78154812	AA	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.006	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420				24	0	0	31	11	26.1905
TMEM41B	0	genome.wustl.edu	37	11	9308018	9308018	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	9308018	9308018	A	-	DEL	TMEM41B	ENST00000299596	human	ensembl	74_37	-1	known	frame_shift_del	c.690	p.F230fs	1.000	pfam_SNARE_assoc	pfam_SNARE_assoc	-	no_errors	TMEM41B	HGNC	ENSG00000166471				104	0	0	82	40	32.7869
SCARNA9	0	genome.wustl.edu	37	11	93454921	93454921	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	93454921	93454921	G	-	DEL	SCARNA9	ENST00000530422	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	SCARNA9	HGNC	ENSG00000254911				21	0	0	21	12	36.3636
AP2A2	0	genome.wustl.edu	37	11	970195	970195	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	11	970195	970195	A	-	DEL	AP2A2	ENST00000332231	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.K57fs	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP2_complex_asu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a-adaptin_app_sub_C,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP2_complex_asu	-	no_errors	AP2A2	HGNC	ENSG00000183020				131	1	0.757576	141	16	10.1911
KLRK1	0	genome.wustl.edu	37	12	10532376	10532376	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	10532376	10532376	A	-	DEL	KLRK1	ENST00000240618	human	ensembl	74_37	-1	known	frame_shift_del	c.164	p.F55fs	0.002	pfam_Herpes_UL45-like	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	KLRK1	HGNC	ENSG00000213809				42	0	0	51	7	12.069
ALDH2	0	genome.wustl.edu	37	12	112229927	112229927	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	112229927	112229927	G	-	DEL	ALDH2	ENST00000261733	human	ensembl	74_37	+1	known	frame_shift_del	c.858	p.K289fs	0.991	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH2	HGNC	ENSG00000111275				107	1	0.925926	41	24	36.9231
TMEM116	0	genome.wustl.edu	37	12	112369427	112369427	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	112369427	112369427	A	-	DEL	TMEM116	ENST00000552374	human	ensembl	74_37	-1	known	frame_shift_del	c.1012	p.*338fs	0.999	NULL	prints_GCR1-cAMP_receptor	-	no_errors	TMEM116	HGNC	ENSG00000198270				88	0	0	44	35	44.3038
RNF10	0	genome.wustl.edu	37	12	121014514	121014514	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	121014514	121014514	T	-	DEL	RNF10	ENST00000535470	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RNF10	HGNC	ENSG00000022840				106	0	0	87	32	26.8908
VPS37B	0	genome.wustl.edu	37	12	123351892	123351892	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	123351892	123351892	G	-	DEL	VPS37B	ENST00000267202	human	ensembl	74_37	-1	known	frame_shift_del	c.629	p.P210fs	0.609	NULL	pfam_Mod_r	-	no_errors	VPS37B	HGNC	ENSG00000139722				19	0	0	16	8	33.3333
TMEM132D	0	genome.wustl.edu	37	12	130184704	130184705	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	130184704	130184705	-	GG	INS	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	frame_shift_ins	c.619_618	p.T206fs	0.073:0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				48	0	0	36	13	26.5306
TMEM132D	0	genome.wustl.edu	37	12	130184705	130184705	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	130184705	130184705	G	-	DEL	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	frame_shift_del	c.618	p.T207fs	0.027	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				48	0	0	36	13	26.5306
EMP1	0	genome.wustl.edu	37	12	13364427	13364429	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	13364427	13364429	AAA	-	DEL	EMP1	ENST00000542289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	EMP1	HGNC	ENSG00000134531				106	0	0	70	39	35.7798
HIST4H4	0	genome.wustl.edu	37	12	14923723	14923724	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	14923723	14923724	-	A	INS	HIST4H4	ENST00000358064	human	ensembl	74_37	-1	known	frame_shift_ins	c.296_295	p.Y99fs	1.000:0.991	superfamily_Histone-fold,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST4H4	HGNC	ENSG00000197837				101	0	0	47	23	32.8571
PLEKHA5	0	genome.wustl.edu	37	12	19460407	19460408	+	RNA	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	19460407	19460408	-	A	INS	PLEKHA5	ENST00000510738	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.923:0.931	-	-	-	no_errors	PLEKHA5	HGNC	ENSG00000052126				22	0	0	16	6	27.2727
RECQL	0	genome.wustl.edu	37	12	21644547	21644547	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	21644547	21644547	T	-	DEL	RECQL	ENST00000421138	human	ensembl	74_37	-1	known	frame_shift_del	c.120	p.V41fs	0.001	NULL	pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_RQC_domain,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	RECQL	HGNC	ENSG00000004700				54	0	0	30	13	30.2326
FAM60A	0	genome.wustl.edu	37	12	31448177	31448178	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	31448177	31448178	-	T	INS	FAM60A	ENST00000337682	human	ensembl	74_37	-1	known	frame_shift_ins	c.219_218	p.N73fs	1.000:1.000	NULL	NULL	-	no_errors	FAM60A	HGNC	ENSG00000139146				46	0	0	29	19	39.5833
PLEKHA8P1	0	genome.wustl.edu	37	12	45566878	45566878	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	45566878	45566878	T	-	DEL	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297				8	0	0	3	6	66.6667
KMT2D	0	genome.wustl.edu	37	12	49448408	49448408	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	49448408	49448408	C	-	DEL	KMT2D	ENST00000301067	human	ensembl	74_37	-1	known	frame_shift_del	c.303	p.S102fs	0.952	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2D	HGNC	ENSG00000167548				20	0	0	15	8	34.7826
ACVR1B	0	genome.wustl.edu	37	12	52345607	52345607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	52345607	52345607	G	-	DEL	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	frame_shift_del	c.80	p.V29fs	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				15	0	0	13	5	27.7778
MAP3K12	0	genome.wustl.edu	37	12	53877706	53877708	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	53877706	53877708	CCT	-	DEL	MAP3K12	ENST00000267079	human	ensembl	74_37	-1	known	in_frame_del	c.1248_1246	p.R416in_frame_del	1.000:1.000:0.990	pirsf_MAP3K12_MAP3K13,superfamily_Kinase-like_dom	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625				225	1	0.442478	171	54	24
OR6C76	0	genome.wustl.edu	37	12	55820959	55820960	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	55820959	55820960	AA	-	DEL	OR6C76	ENST00000328314	human	ensembl	74_37	+1	known	frame_shift_del	c.922_923	p.K311fs	0.016:0.019	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C76	HGNC	ENSG00000185821				31	0	0	22	16	42.1053
RPL41	0	genome.wustl.edu	37	12	56510435	56510435	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56510435	56510435	T	-	DEL	RPL41	ENST00000358888	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL41	HGNC	ENSG00000229117				33	0	0	20	10	33.3333
SMARCC2	0	genome.wustl.edu	37	12	56559113	56559113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56559113	56559113	G	-	DEL	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	frame_shift_del	c.3128	p.P1043fs	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613				109	0	0	98	32	24.6154
TIMELESS	0	genome.wustl.edu	37	12	56818901	56818903	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	56818901	56818903	CTT	-	DEL	TIMELESS	ENST00000553532	human	ensembl	74_37	-1	known	in_frame_del	c.1614_1612	p.K538in_frame_del	0.826:0.902:0.955	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602				81	0	0	59	21	26.25
NAB2	0	genome.wustl.edu	37	12	57485461	57485461	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57485461	57485461	G	-	DEL	NAB2	ENST00000300131	human	ensembl	74_37	+1	known	frame_shift_del	c.637	p.G214fs	1.000	pfam_NAB_co-repressor_dom	pfam_NAB_co-repressor_dom,pfam_Nab_N,superfamily_SAM/pointed	-	no_errors	NAB2	HGNC	ENSG00000166886				48	0	0	14	21	60
MBD6	0	genome.wustl.edu	37	12	57920756	57920758	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57920756	57920758	CTT	-	DEL	MBD6	ENST00000355673	human	ensembl	74_37	+1	known	in_frame_del	c.1828_1830	p.L611in_frame_del	0.994:0.894:0.707	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	-	no_errors	MBD6	HGNC	ENSG00000166987				208	0	0	142	51	26.4249
DCTN2	0	genome.wustl.edu	37	12	57927805	57927806	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	57927805	57927806	-	G	INS	DCTN2	ENST00000434715	human	ensembl	74_37	-1	known	frame_shift_ins	c.615_614	p.D206fs	0.994:0.993	NULL	NULL	-	no_errors	DCTN2	HGNC	ENSG00000175203				90	0	0	47	22	31.8841
AVPR1A	0	genome.wustl.edu	37	12	63544421	63544421	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	63544421	63544421	C	-	DEL	AVPR1A	ENST00000299178	human	ensembl	74_37	-1	known	frame_shift_del	c.196	p.V66fs	0.996	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_DUF1856,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_Vprs_V1A_rcpt,prints_Vasoprsn_rcpt,prints_GPCR_Rhodpsn	-	no_errors	AVPR1A	HGNC	ENSG00000166148				60	0	0	33	21	38.8889
WIF1	0	genome.wustl.edu	37	12	65514287	65514287	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	65514287	65514287	A	-	DEL	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	frame_shift_del	c.198	p.F66fs	0.997	pfam_WIF,smart_WIF,pfscan_WIF,prints_Wnt-inh	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076				103	0	0	59	26	30.5882
COPS7A	0	genome.wustl.edu	37	12	6839847	6839847	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	6839847	6839847	A	-	DEL	COPS7A	ENST00000229251	human	ensembl	74_37	+1	known	frame_shift_del	c.649	p.T219fs	0.969	NULL	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS7A	HGNC	ENSG00000111652				74	0	0	51	20	28.169
ATN1	0	genome.wustl.edu	37	12	7045390	7045390	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	7045390	7045390	G	-	DEL	ATN1	ENST00000356654	human	ensembl	74_37	+1	known	frame_shift_del	c.960	p.A322fs	1.000	NULL	pfam_Atrophin-like,prints_Atrophin-1	-	no_errors	ATN1	HGNC	ENSG00000111676				97	0	0	79	35	30.7018
LUM	0	genome.wustl.edu	37	12	91502682	91502682	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	91502682	91502682	A	-	DEL	LUM	ENST00000266718	human	ensembl	74_37	-1	known	frame_shift_del	c.75	p.L27fs	0.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LUM	HGNC	ENSG00000139329				66	0	0	49	16	24.6154
EEA1	0	genome.wustl.edu	37	12	93213103	93213103	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	93213103	93213103	T	-	DEL	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	frame_shift_del	c.1709	p.N570fs	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189				70	0	0	63	27	30
PLXNC1	0	genome.wustl.edu	37	12	94620983	94620984	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	94620983	94620984	-	G	INS	PLXNC1	ENST00000258526	human	ensembl	74_37	+1	known	frame_shift_ins	c.1952_1953	p.N653fs	0.000:0.001	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNC1	HGNC	ENSG00000136040				65	0	0	62	22	26.1905
TMPO	0	genome.wustl.edu	37	12	98921672	98921672	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	12	98921672	98921672	A	-	DEL	TMPO	ENST00000266732	human	ensembl	74_37	+1	known	frame_shift_del	c.288	p.T99fs	1.000	NULL	pfam_LAP2alpha,pfam_LEM-like_dom,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom,pfscan_LEM-like_dom	-	no_errors	TMPO	HGNC	ENSG00000120802				84	0	0	73	33	31.1321
GAS6	0	genome.wustl.edu	37	13	114523857	114523858	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	114523857	114523858	-	G	INS	GAS6	ENST00000357389	human	ensembl	74_37	-1	known	frame_shift_ins	c.2146_2145	p.V715fs	0.007:0.008	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,pfam_GLA_domain,superfamily_ConA-like_lec_gl_sf,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	GAS6	HGNC	ENSG00000183087				60	0	0	53	16	23.1884
ZMYM2	0	genome.wustl.edu	37	13	20657094	20657094	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	20657094	20657094	A	-	DEL	ZMYM2	ENST00000382869	human	ensembl	74_37	+1	known	frame_shift_del	c.3742	p.N1250fs	1.000	pfam_DUF3504	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM2	HGNC	ENSG00000121741				62	0	0	41	15	26.7857
SLC46A3	0	genome.wustl.edu	37	13	29278265	29278265	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	29278265	29278265	A	-	DEL	SLC46A3	ENST00000475385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC46A3	HGNC	ENSG00000139508				19	0	0	20	30	60
HMGB1	0	genome.wustl.edu	37	13	31037600	31037600	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	31037600	31037600	T	-	DEL	HMGB1	ENST00000468384	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403				56	0	0	30	21	41.1765
MEDAG	0	genome.wustl.edu	37	13	31480852	31480852	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	31480852	31480852	G	-	DEL	MEDAG	ENST00000380482	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.G69fs	0.590	NULL	NULL	-	no_errors	MEDAG	HGNC	ENSG00000102802				8	0	0	10	6	37.5
RFC3	0	genome.wustl.edu	37	13	34398063	34398063	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	34398063	34398063	A	-	DEL	RFC3	ENST00000380071	human	ensembl	74_37	+1	known	frame_shift_del	c.235	p.I82fs	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,superfamily_DNA_pol3_clamp-load_cplx_C,smart_AAA+_ATPase	-	no_errors	RFC3	HGNC	ENSG00000133119				17	0	0	22	5	18.5185
FREM2	0	genome.wustl.edu	37	13	39450287	39450290	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	39450287	39450290	GTAA	-	DEL	FREM2	ENST00000280481	human	ensembl	74_37	+1	known	splice_site_del	c.8409+1_8409+1	e19+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	FREM2	HGNC	ENSG00000150893				242	0	0	207	11	5.04587
COG6	0	genome.wustl.edu	37	13	40273702	40273702	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	40273702	40273702	A	-	DEL	COG6	ENST00000455146	human	ensembl	74_37	+1	known	frame_shift_del	c.1231	p.I413fs	1.000	pfam_COG6	pfam_COG6	-	no_errors	COG6	HGNC	ENSG00000133103				25	0	0	24	11	31.4286
NAA16	0	genome.wustl.edu	37	13	41941577	41941577	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	41941577	41941577	T	-	DEL	NAA16	ENST00000379406	human	ensembl	74_37	+1	known	frame_shift_del	c.1542	p.F516fs	1.000	pirsf_NatA_aux_su	pfam_TPR_2,pfam_NatA_aux_su,pfam_TPR_1,smart_TPR_repeat,pirsf_NatA_aux_su,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NAA16	HGNC	ENSG00000172766				49	0	0	30	17	36.1702
HTR2A	0	genome.wustl.edu	37	13	47469818	47469818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	47469818	47469818	T	-	DEL	HTR2A	ENST00000378688	human	ensembl	74_37	-1	known	frame_shift_del	c.224	p.N75fs	1.000	prints_5HT2A_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_5HT2A_rcpt,prints_GPCR_Rhodpsn,prints_5HT_rcpt	-	no_errors	HTR2A	HGNC	ENSG00000102468				72	0	0	46	29	38.6667
RCBTB2	0	genome.wustl.edu	37	13	49089392	49089392	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	49089392	49089392	T	-	DEL	RCBTB2	ENST00000430805	human	ensembl	74_37	-1	known	frame_shift_del	c.313	p.I105fs	1.000	superfamily_RCC1/BLIP-II	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB2	HGNC	ENSG00000136161				157	0	0	111	60	35.0877
CAB39L	0	genome.wustl.edu	37	13	49933960	49933960	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	49933960	49933960	T	-	DEL	CAB39L	ENST00000347776	human	ensembl	74_37	-1	known	frame_shift_del	c.285	p.D96fs	1.000	pfam_Mo25,superfamily_ARM-type_fold	pfam_Mo25,superfamily_ARM-type_fold	-	no_errors	CAB39L	HGNC	ENSG00000102547				68	0	0	36	15	29.4118
RCBTB1	0	genome.wustl.edu	37	13	50140831	50140831	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	50140831	50140831	T	-	DEL	RCBTB1	ENST00000258646	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.K67fs	1.000	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_BTB_POZ,superfamily_RCC1/BLIP-II,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RCBTB1	HGNC	ENSG00000136144				90	0	0	78	24	23.5294
ALG11	0	genome.wustl.edu	37	13	52593050	52593050	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	52593050	52593050	T	-	DEL	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	frame_shift_del	c.46	p.Y18fs	1.000	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710				56	0	0	45	24	34.7826
CKAP2	0	genome.wustl.edu	37	13	53049034	53049034	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	53049034	53049034	A	-	DEL	CKAP2	ENST00000378037	human	ensembl	74_37	+1	known	frame_shift_del	c.1810	p.K606fs	0.999	NULL	NULL	-	no_errors	CKAP2	HGNC	ENSG00000136108				35	0	0	36	17	32.0755
TBC1D4	0	genome.wustl.edu	37	13	75884248	75884248	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	75884248	75884248	A	-	DEL	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	frame_shift_del	c.2423	p.L808fs	0.996	pfam_DUF3350	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				42	0	0	27	15	35.7143
EDNRB	0	genome.wustl.edu	37	13	78475266	78475267	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	78475266	78475267	-	A	INS	EDNRB	ENST00000334286	human	ensembl	74_37	-1	known	frame_shift_ins	c.878_877	p.Y293fs	1.000:1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Endthln_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ETB_rcpt,prints_Endthln_rcpt,prints_GPCR_Rhodpsn,prints_Bombsn_rcpt	-	no_errors	EDNRB	HGNC	ENSG00000136160				64	0	0	49	26	34.6667
PTMAP5	0	genome.wustl.edu	37	13	82264950	82264950	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	82264950	82264950	A	-	DEL	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182				31	0	0	23	8	25.8065
DZIP1	0	genome.wustl.edu	37	13	96293910	96293910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	96293910	96293910	T	-	DEL	DZIP1	ENST00000347108	human	ensembl	74_37	-1	known	frame_shift_del	c.236	p.K79fs	0.988	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DZIP1	HGNC	ENSG00000134874				140	0	0	104	41	28.2759
UGGT2	0	genome.wustl.edu	37	13	96511867	96511867	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	96511867	96511867	T	-	DEL	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	frame_shift_del	c.3803	p.N1268fs	1.000	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595				56	0	0	50	21	29.5775
GPR18	0	genome.wustl.edu	37	13	99908125	99908126	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	13	99908125	99908126	-	T	INS	GPR18	ENST00000340807	human	ensembl	74_37	-1	known	frame_shift_ins	c.2_1	p.M1fs	1.000:1.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR18	HGNC	ENSG00000125245				162	0	0	117	42	26.4151
MOK	0	genome.wustl.edu	37	14	102718303	102718303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	102718303	102718303	T	-	DEL	MOK	ENST00000361847	human	ensembl	74_37	-1	known	frame_shift_del	c.313	p.I105fs	0.007	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MOK	HGNC	ENSG00000080823				82	0	0	63	19	23.1707
TEP1	0	genome.wustl.edu	37	14	20852773	20852773	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	20852773	20852773	C	-	DEL	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	frame_shift_del	c.3207	p.I1070fs	0.000	NULL	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566				245	0	0	178	59	24.8945
METTL17	0	genome.wustl.edu	37	14	21462740	21462740	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	21462740	21462740	T	-	DEL	METTL17	ENST00000382985	human	ensembl	74_37	+1	known	frame_shift_del	c.736	p.F247fs	1.000	pfam_Ribosomal_Rsm22_bac-type,pfam_Methyltransf_11	pfam_Ribosomal_Rsm22_bac-type,pfam_Methyltransf_11	-	no_errors	METTL17	HGNC	ENSG00000165792				136	0	0	99	50	33.557
ZNF219	0	genome.wustl.edu	37	14	21561074	21561075	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	21561074	21561075	GC	-	DEL	ZNF219	ENST00000360947	human	ensembl	74_37	-1	known	frame_shift_del	c.382_381	p.L128fs	0.016:0.016	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Histamine_H3_rcpt	-	no_errors	ZNF219	HGNC	ENSG00000165804				70	0	0	30	17	36.1702
SALL2	0	genome.wustl.edu	37	14	21992276	21992276	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	21992276	21992276	G	-	DEL	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	frame_shift_del	c.1586	p.P529fs	0.948	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821				68	0	0	36	20	35.7143
CBLN3	0	genome.wustl.edu	37	14	24898086	24898087	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	24898086	24898087	-	C	INS	CBLN3	ENST00000267406	human	ensembl	74_37	-1	known	frame_shift_ins	c.175_174	p.P58fs	0.405:0.018	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN3	HGNC	ENSG00000139899				9	0	0	6	3	33.3333
AKAP6	0	genome.wustl.edu	37	14	33015029	33015029	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	33015029	33015029	A	-	DEL	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	frame_shift_del	c.1170	p.R392fs	0.987	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				76	0	0	74	38	33.9286
AKAP6	0	genome.wustl.edu	37	14	33292703	33292703	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	33292703	33292703	A	-	DEL	AKAP6	ENST00000280979	human	ensembl	74_37	+1	known	frame_shift_del	c.5684	p.N1896fs	1.000	NULL	smart_Spectrin/alpha-actinin	-	no_errors	AKAP6	HGNC	ENSG00000151320				48	0	0	41	22	34.9206
NEMF	0	genome.wustl.edu	37	14	50272836	50272836	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	50272836	50272836	G	-	DEL	NEMF	ENST00000298310	human	ensembl	74_37	-1	known	frame_shift_del	c.1760	p.P587fs	1.000	pfam_DUF814	pfam_Fibro-bd_N,pfam_DUF3441,pfam_DUF814,superfamily_FlgN-like_dom	-	no_errors	NEMF	HGNC	ENSG00000165525				52	0	0	49	10	16.9492
ATL1	0	genome.wustl.edu	37	14	51089952	51089952	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	51089952	51089952	A	-	DEL	ATL1	ENST00000357032	human	ensembl	74_37	+1	known	frame_shift_del	c.1105	p.M371fs	1.000	pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_P-loop_NTPase,superfamily_Guanylate-bd_C	-	no_errors	ATL1	HGNC	ENSG00000198513				36	0	0	32	14	30.4348
FERMT2	0	genome.wustl.edu	37	14	53360082	53360082	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	53360082	53360082	T	-	DEL	FERMT2	ENST00000343279	human	ensembl	74_37	-1	known	frame_shift_del	c.455	p.K152fs	1.000	pfam_FERM_N,smart_Band_41_domain	pfam_FERM_central,pfam_Pleckstrin_homology,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FERMT2	HGNC	ENSG00000073712				84	0	0	79	38	32.4786
OTX2	0	genome.wustl.edu	37	14	57268921	57268921	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	57268921	57268921	G	-	DEL	OTX2	ENST00000339475	human	ensembl	74_37	-1	known	frame_shift_del	c.426	p.S143fs	1.000	NULL	pfam_Otx_TF_C,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Otx2_TF,prints_Otx_TF	-	no_errors	OTX2	HGNC	ENSG00000165588				52	0	0	39	15	27.7778
KIAA0586	0	genome.wustl.edu	37	14	58934608	58934609	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	58934608	58934609	-	A	INS	KIAA0586	ENST00000556134	human	ensembl	74_37	+1	known	frame_shift_ins	c.2365_2366	p.D792fs	1.000:1.000	NULL	NULL	-	no_errors	KIAA0586	HGNC	ENSG00000100578				92	0	0	65	34	34.3434
DAAM1	0	genome.wustl.edu	37	14	59835592	59835592	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	59835592	59835592	T	-	DEL	DAAM1	ENST00000553966	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	DAAM1	HGNC	ENSG00000100592				26	0	0	19	8	29.6296
PLEKHG3	0	genome.wustl.edu	37	14	65207900	65207900	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	65207900	65207900	C	-	DEL	PLEKHG3	ENST00000394691	human	ensembl	74_37	+1	known	frame_shift_del	c.1665	p.P557fs	0.001	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG3	HGNC	ENSG00000126822				232	0	0	113	44	28.0255
GALNT16	0	genome.wustl.edu	37	14	69800300	69800300	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	69800300	69800300	G	-	DEL	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	frame_shift_del	c.950	p.G319fs	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT16	HGNC	ENSG00000100626				104	0	0	66	22	25
SIPA1L1	0	genome.wustl.edu	37	14	72090950	72090951	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	72090950	72090951	-	G	INS	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	frame_shift_ins	c.1815_1816	p.L606fs	1.000:1.000	pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555				56	0	0	53	21	28.3784
ELMSAN1	0	genome.wustl.edu	37	14	74205773	74205773	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	74205773	74205773	G	-	DEL	ELMSAN1	ENST00000286523	human	ensembl	74_37	-1	known	frame_shift_del	c.939	p.N314fs	0.000	NULL	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom	-	no_errors	ELMSAN1	HGNC	ENSG00000156030				40	0	0	19	7	26.9231
LTBP2	0	genome.wustl.edu	37	14	74967607	74967607	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	74967607	74967607	G	-	DEL	LTBP2	ENST00000261978	human	ensembl	74_37	-1	known	frame_shift_del	c.5446	p.H1816fs	0.817	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681				84	0	0	56	24	30
AHSA1	0	genome.wustl.edu	37	14	77935587	77935587	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	77935587	77935587	T	-	DEL	AHSA1	ENST00000216479	human	ensembl	74_37	+1	known	frame_shift_del	c.1012	p.*339fs	0.998	NULL	pfam_AHSA1_N,pfam_Activator_of_Hsp90_ATPase,superfamily_AHSA1_N	-	no_errors	AHSA1	HGNC	ENSG00000100591				160	0	0	106	50	32.0513
PTPN21	0	genome.wustl.edu	37	14	88940113	88940113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	88940113	88940113	T	-	DEL	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	frame_shift_del	c.2545	p.I849fs	0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778				99	0	0	66	28	29.7872
SERPINA11	0	genome.wustl.edu	37	14	94915004	94915004	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	14	94915004	94915004	G	-	DEL	SERPINA11	ENST00000334708	human	ensembl	74_37	-1	known	frame_shift_del	c.108	p.R37fs	0.000	superfamily_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINA11	HGNC	ENSG00000186910				181	0	0	134	57	29.8429
SNORD116-6	0	genome.wustl.edu	37	15	25310192	25310193	+	RNA	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	25310192	25310193	-	A	INS	SNORD116-6	ENST00000384711	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.001	-	-	-	no_errors	SNORD116-6	HGNC	ENSG00000207442				150	0	0	100	37	27.0073
FAN1	0	genome.wustl.edu	37	15	31196885	31196887	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	31196885	31196887	CCT	-	DEL	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	in_frame_del	c.19_21	p.P8in_frame_del	0.006:0.019:0.002	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690				139	0	0	83	44	34.6457
BAHD1	0	genome.wustl.edu	37	15	40750958	40750958	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	40750958	40750958	C	-	DEL	BAHD1	ENST00000416165	human	ensembl	74_37	+1	known	frame_shift_del	c.295	p.S101fs	0.991	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	BAHD1	HGNC	ENSG00000140320				90	0	0	62	20	24.3902
B2M	0	genome.wustl.edu	37	15	45007689	45007690	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	45007689	45007690	TA	-	DEL	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_del	c.136_137	p.Y46fs	1.000:1.000	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				146	0	0	94	59	38.5621
B2M	0	genome.wustl.edu	37	15	45007824	45007825	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	45007824	45007825	-	C	INS	B2M	ENST00000544417	human	ensembl	74_37	+1	known	frame_shift_ins	c.271_272	p.T93fs	0.816:0.591	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	B2M	HGNC	ENSG00000166710				129	0	0	65	40	38.0952
SLC24A5	0	genome.wustl.edu	37	15	48431210	48431211	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	48431210	48431211	-	T	INS	SLC24A5	ENST00000341459	human	ensembl	74_37	+1	known	frame_shift_ins	c.916_917	p.W308fs	1.000:1.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A5	HGNC	ENSG00000188467				63	0	0	48	27	36
WDR72	0	genome.wustl.edu	37	15	53908071	53908071	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	53908071	53908071	T	-	DEL	WDR72	ENST00000360509	human	ensembl	74_37	-1	known	frame_shift_del	c.2332	p.M778fs	0.082	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415				198	0	0	131	66	33.5025
RFX7	0	genome.wustl.edu	37	15	56386180	56386181	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	56386180	56386181	-	T	INS	RFX7	ENST00000423270	human	ensembl	74_37	-1	known	frame_shift_ins	c.3746_3745	p.I1249fs	1.000:1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX7	HGNC	ENSG00000181827				75	0	0	52	26	33.3333
SLTM	0	genome.wustl.edu	37	15	59186129	59186129	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	59186129	59186129	T	-	DEL	SLTM	ENST00000380516	human	ensembl	74_37	-1	known	frame_shift_del	c.1539	p.E514fs	0.997	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SLTM	HGNC	ENSG00000137776				52	0	0	58	19	24.6753
GCNT3	0	genome.wustl.edu	37	15	59911278	59911280	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	59911278	59911280	AAG	-	DEL	GCNT3	ENST00000396065	human	ensembl	74_37	+1	known	in_frame_del	c.841_843	p.K283in_frame_del	0.000:0.001:0.044	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT3	HGNC	ENSG00000140297				270	0	0	143	68	32.2275
NARG2	0	genome.wustl.edu	37	15	60741266	60741267	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	60741266	60741267	-	T	INS	NARG2	ENST00000261520	human	ensembl	74_37	-1	known	frame_shift_ins	c.1900_1899	p.P633fs	1.000:1.000	NULL	pfam_NARG2_C	-	no_errors	NARG2	HGNC	ENSG00000128915				65	0	0	43	36	45.5696
NOX5	0	genome.wustl.edu	37	15	69331226	69331226	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	69331226	69331226	T	-	DEL	NOX5	ENST00000388866	human	ensembl	74_37	+1	known	frame_shift_del	c.1401	p.H470fs	0.970	pfam_FAD-bd_8,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NOX5	HGNC	ENSG00000255346				169	1	0.588235	88	75	46.0123
MYO9A	0	genome.wustl.edu	37	15	72190580	72190580	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	72190580	72190580	A	-	DEL	MYO9A	ENST00000424560	human	ensembl	74_37	-1	known	frame_shift_del	c.4264	p.Y1422fs	1.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9A	HGNC	ENSG00000066933				74	0	0	51	15	22.7273
MESDC2	0	genome.wustl.edu	37	15	81281974	81281976	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	81281974	81281976	CTT	-	DEL	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	in_frame_del	c.159_157	p.K53in_frame_del	1.000:1.000:1.000	pfam_Mesoderm_development_cand-2	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899				103	0	0	72	34	32.0755
IL16	0	genome.wustl.edu	37	15	81593804	81593805	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	15	81593804	81593805	-	A	INS	IL16	ENST00000302987	human	ensembl	74_37	+1	known	frame_shift_ins	c.3269_3270	p.L1093fs	0.045:0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				98	0	0	68	22	24.4444
TVP23A	0	genome.wustl.edu	37	16	10867203	10867203	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	10867203	10867203	A	-	DEL	TVP23A	ENST00000299866	human	ensembl	74_37	-1	known	frame_shift_del	c.420	p.F140fs	1.000	pfam_DUF846_euk	pfam_DUF846_euk	-	no_errors	TVP23A	HGNC	ENSG00000166676				61	0	0	41	25	37.8788
CACNA1H	0	genome.wustl.edu	37	16	1258148	1258148	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	1258148	1258148	C	-	DEL	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	frame_shift_del	c.3290	p.S1099fs	0.028	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557				11	0	0	3	4	57.1429
PDXDC1	0	genome.wustl.edu	37	16	15122839	15122840	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	15122839	15122840	-	C	INS	PDXDC1	ENST00000455313	human	ensembl	74_37	+1	known	frame_shift_ins	c.1240_1241	p.L416fs	0.000:0.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	PDXDC1	HGNC	ENSG00000179889				34	0	0	33	6	15.3846
BRICD5	0	genome.wustl.edu	37	16	2260064	2260064	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	2260064	2260064	G	-	DEL	BRICD5	ENST00000566018	human	ensembl	74_37	-1	putative	frame_shift_del	c.399	p.C134fs	0.859	NULL	NULL	-	no_errors	BRICD5	HGNC	ENSG00000182685				12	0	0	9	7	43.75
PALB2	0	genome.wustl.edu	37	16	23647028	23647028	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	23647028	23647028	T	-	DEL	PALB2	ENST00000261584	human	ensembl	74_37	-1	known	frame_shift_del	c.839	p.N280fs	0.001	NULL	superfamily_WD40_repeat_dom	-	no_errors	PALB2	HGNC	ENSG00000083093				129	0	0	97	49	33.5616
KIAA0556	0	genome.wustl.edu	37	16	27761168	27761168	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	27761168	27761168	G	-	DEL	KIAA0556	ENST00000261588	human	ensembl	74_37	+1	known	frame_shift_del	c.2887	p.G964fs	0.003	NULL	superfamily_Thaumatin	-	no_errors	KIAA0556	HGNC	ENSG00000047578				50	0	0	26	12	31.5789
SPN	0	genome.wustl.edu	37	16	29675364	29675365	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	29675364	29675365	-	C	INS	SPN	ENST00000360121	human	ensembl	74_37	+1	known	frame_shift_ins	c.315_316	p.Q106fs	0.000:0.000	NULL	NULL	-	no_errors	SPN	HGNC	ENSG00000197471				88	0	0	71	26	26.8041
MAZ	0	genome.wustl.edu	37	16	29818054	29818054	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	29818054	29818054	C	-	DEL	MAZ	ENST00000219782	human	ensembl	74_37	+1	known	frame_shift_del	c.32	p.F14fs	0.006	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	MAZ	HGNC	ENSG00000103495				27	0	0	24	8	25
INO80E	0	genome.wustl.edu	37	16	30007665	30007665	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30007665	30007665	A	-	DEL	INO80E	ENST00000563197	human	ensembl	74_37	+1	known	frame_shift_del	c.34	p.K14fs	1.000	NULL	NULL	-	no_errors	INO80E	HGNC	ENSG00000169592				22	0	0	5	6	54.5455
FAM57B	0	genome.wustl.edu	37	16	30041821	30041821	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30041821	30041821	C	-	DEL	FAM57B	ENST00000380495	human	ensembl	74_37	-1	known	frame_shift_del	c.28	p.V10fs	1.000	NULL	pfam_TLC-dom,smart_TLC-dom,pfscan_TLC-dom	-	no_errors	FAM57B	HGNC	ENSG00000149926				18	0	0	14	6	30
CORO1A	0	genome.wustl.edu	37	16	30198155	30198155	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30198155	30198155	G	-	DEL	CORO1A	ENST00000219150	human	ensembl	74_37	+1	known	frame_shift_del	c.340	p.G115fs	0.965	pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_DUF1899,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO1A	HGNC	ENSG00000102879				51	0	0	34	11	24.4444
CLDN6	0	genome.wustl.edu	37	16	3065572	3065572	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	3065572	3065572	G	-	DEL	CLDN6	ENST00000328796	human	ensembl	74_37	-1	known	frame_shift_del	c.451	p.L151fs	0.945	pfam_PMP22/EMP/MP20/Claudin	pfam_PMP22/EMP/MP20/Claudin,prints_Claudin,prints_Claudin6	-	no_errors	CLDN6	HGNC	ENSG00000184697				38	0	0	19	11	36.6667
SETD1A	0	genome.wustl.edu	37	16	30977317	30977317	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	30977317	30977317	C	-	DEL	SETD1A	ENST00000262519	human	ensembl	74_37	+1	known	frame_shift_del	c.2115	p.G708fs	0.729	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381				135	0	0	97	27	21.7742
STX4	0	genome.wustl.edu	37	16	31050861	31050861	+	Splice_Site	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	31050861	31050861	G	-	DEL	STX4	ENST00000313843	human	ensembl	74_37	+1	known	splice_site_del	c.703-1	e9-1	1.000	-	-	-	no_errors	STX4	HGNC	ENSG00000103496				119	0	0	93	29	23.7705
ZNF200	0	genome.wustl.edu	37	16	3273976	3273976	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	3273976	3273976	T	-	DEL	ZNF200	ENST00000414144	human	ensembl	74_37	-1	known	frame_shift_del	c.1104	p.K368fs	0.874	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF200	HGNC	ENSG00000010539				393	0	0	301	114	27.4699
AXIN1	0	genome.wustl.edu	37	16	347982	347983	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	347982	347983	-	C	INS	AXIN1	ENST00000262320	human	ensembl	74_37	-1	known	frame_shift_ins	c.1524_1523	p.A509fs	0.000:0.021	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN1	HGNC	ENSG00000103126				21	0	0	13	4	23.5294
VPS35	0	genome.wustl.edu	37	16	46695735	46695735	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	46695735	46695735	T	-	DEL	VPS35	ENST00000299138	human	ensembl	74_37	-1	known	frame_shift_del	c.2106	p.A703fs	0.998	pfam_VPS35,superfamily_ARM-type_fold	pfam_VPS35,superfamily_ARM-type_fold	-	no_errors	VPS35	HGNC	ENSG00000069329				119	0	0	134	21	13.5484
ENSG00000261270	0	genome.wustl.edu	37	16	56974223	56974223	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	56974223	56974223	T	-	DEL	ENSG00000261270	ENST00000565861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	RP11-325K4.3	Clone_based_vega_gene	ENSG00000261270				20	0	0	17	5	22.7273
CDH16	0	genome.wustl.edu	37	16	66945906	66945906	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	66945906	66945906	G	-	DEL	CDH16	ENST00000299752	human	ensembl	74_37	-1	known	frame_shift_del	c.1686	p.K563fs	0.250	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH16	HGNC	ENSG00000166589				111	0	0	119	8	6.29921
MIR328	0	genome.wustl.edu	37	16	67236285	67236286	+	RNA	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67236285	67236286	-	C	INS	MIR328	ENST00000385213	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	MIR328	HGNC	ENSG00000207948				119	0	0	84	35	29.4118
FHOD1	0	genome.wustl.edu	37	16	67267852	67267853	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67267852	67267853	GG	-	DEL	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	frame_shift_del	c.1754_1753	p.P585fs	1.000:1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				28	0	0	12	7	36.8421
ENSG00000263126	0	genome.wustl.edu	37	16	67917844	67917844	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	67917844	67917844	C	-	DEL	ENSG00000263126	ENST00000572067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTC-479C5.10	Clone_based_vega_gene	ENSG00000263126				64	0	0	43	15	25.8621
ESRP2	0	genome.wustl.edu	37	16	68264452	68264452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	68264452	68264452	G	-	DEL	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	frame_shift_del	c.1934	p.P645fs	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067				45	0	0	35	19	35.1852
MTSS1L	0	genome.wustl.edu	37	16	70698147	70698147	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	70698147	70698147	G	-	DEL	MTSS1L	ENST00000338779	human	ensembl	74_37	-1	known	frame_shift_del	c.1677	p.G560fs	0.001	NULL	pfam_IRSp53/MIM_homology_IMD	-	no_errors	MTSS1L	HGNC	ENSG00000132613				20	0	0	23	5	17.8571
CHST4	0	genome.wustl.edu	37	16	71570593	71570593	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	71570593	71570593	A	-	DEL	CHST4	ENST00000338482	human	ensembl	74_37	+1	known	frame_shift_del	c.13	p.M7fs	0.000	pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST4	HGNC	ENSG00000140835				112	0	0	92	44	32.3529
MARVELD3	0	genome.wustl.edu	37	16	71668442	71668442	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	71668442	71668442	G	-	DEL	MARVELD3	ENST00000268485	human	ensembl	74_37	+1	known	frame_shift_del	c.942	p.Y317fs	0.000	NULL	NULL	-	no_errors	MARVELD3	HGNC	ENSG00000140832				65	0	0	47	12	20.339
ZFHX3	0	genome.wustl.edu	37	16	72831391	72831392	+	In_Frame_Ins	INS	-	-	TGC			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	16	72831391	72831392	-	TGC	INS	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	in_frame_ins	c.5190_5189	p.1734in_frame_insQ	0.993:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				31	0	0	22	14	38.8889
MYOCD	0	genome.wustl.edu	37	17	12656041	12656041	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	12656041	12656041	C	-	DEL	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	frame_shift_del	c.1436	p.S481fs	0.879	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052				83	0	0	63	22	25.8824
CRK	0	genome.wustl.edu	37	17	1326755	1326757	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	1326755	1326757	AAA	-	DEL	CRK	ENST00000572145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.352:0.023:0.010	-	-	-	no_errors	CRK	HGNC	ENSG00000167193				49	0	0	14	32	69.5652
MPRIP	0	genome.wustl.edu	37	17	17046886	17046886	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	17046886	17046886	C	-	DEL	MPRIP	ENST00000395811	human	ensembl	74_37	+1	known	frame_shift_del	c.1052	p.P353fs	0.999	NULL	pfam_Pleckstrin_homology,superfamily_Ferritin-like_SF,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	MPRIP	HGNC	ENSG00000133030				44	0	0	24	11	31.4286
NT5M	0	genome.wustl.edu	37	17	17250189	17250190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	17250189	17250190	-	C	INS	NT5M	ENST00000389022	human	ensembl	74_37	+1	known	frame_shift_ins	c.615_616	p.R207fs	0.998:1.000	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	pfam_5'(3')-deoxyribonucleotidase,superfamily_HAD-like_dom	-	no_errors	NT5M	HGNC	ENSG00000205309				98	0	0	49	12	19.6721
SLC47A1	0	genome.wustl.edu	37	17	19459098	19459098	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	19459098	19459098	C	-	DEL	SLC47A1	ENST00000571335	human	ensembl	74_37	+1	novel	frame_shift_del	c.144	p.T51fs	0.000	NULL	pfam_MATE	-	no_errors	SLC47A1	HGNC	ENSG00000142494				46	0	0	25	17	40.4762
ALDH3A2	0	genome.wustl.edu	37	17	19566732	19566732	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	19566732	19566732	A	-	DEL	ALDH3A2	ENST00000339618	human	ensembl	74_37	+1	known	frame_shift_del	c.1027	p.N344fs	0.980	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	pfam_Aldehyde_DH_dom,pfam_Acyl-CoA_reduct_LuxC,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH_NAD(P)	-	no_errors	ALDH3A2	HGNC	ENSG00000072210				81	0	0	58	35	37.6344
PHF12	0	genome.wustl.edu	37	17	27233246	27233247	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27233246	27233247	GA	-	DEL	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	frame_shift_del	c.2970_2969	p.L990fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118				66	0	0	38	15	28.3019
SEZ6	0	genome.wustl.edu	37	17	27284080	27284080	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27284080	27284080	G	-	DEL	SEZ6	ENST00000317338	human	ensembl	74_37	-1	known	frame_shift_del	c.2675	p.P892fs	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_CUB_dom,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6	HGNC	ENSG00000063015				20	0	0	17	7	29.1667
MYO18A	0	genome.wustl.edu	37	17	27493332	27493332	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27493332	27493332	G	-	DEL	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	frame_shift_del	c.627	p.V210fs	0.000	superfamily_PDZ	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535				108	0	0	64	32	33.3333
SSH2	0	genome.wustl.edu	37	17	27959374	27959375	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	27959374	27959375	-	G	INS	SSH2	ENST00000269033	human	ensembl	74_37	-1	known	frame_shift_ins	c.2757_2756	p.E920fs	0.164:0.003	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_DEK_C,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	SSH2	HGNC	ENSG00000141298				320	0	0	210	90	30
ZNF207	0	genome.wustl.edu	37	17	30687623	30687623	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	30687623	30687623	A	-	DEL	ZNF207	ENST00000394670	human	ensembl	74_37	+1	known	frame_shift_del	c.314	p.K107fs	1.000	NULL	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244				44	0	0	26	11	29.7297
OR1A2	0	genome.wustl.edu	37	17	3101552	3101552	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	3101552	3101552	T	-	DEL	OR1A2	ENST00000381951	human	ensembl	74_37	+1	known	frame_shift_del	c.740	p.L249fs	0.029	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1A2	HGNC	ENSG00000172150				91	0	0	84	48	36.3636
LHX1	0	genome.wustl.edu	37	17	35300395	35300395	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	35300395	35300395	C	-	DEL	LHX1	ENST00000254457	human	ensembl	74_37	+1	known	frame_shift_del	c.1188	p.E399fs	1.000	NULL	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LHX1	HGNC	ENSG00000132130				28	0	0	23	9	28.125
HNF1B	0	genome.wustl.edu	37	17	36059174	36059174	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	36059174	36059174	G	-	DEL	HNF1B	ENST00000225893	human	ensembl	74_37	-1	known	frame_shift_del	c.1561	p.Q521fs	1.000	pfam_HNF1b_C	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_HNF1_dimer_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1B	HGNC	ENSG00000108753				85	0	0	36	18	33.3333
ZZEF1	0	genome.wustl.edu	37	17	3947659	3947660	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	3947659	3947660	CT	-	DEL	ZZEF1	ENST00000381638	human	ensembl	74_37	-1	known	frame_shift_del	c.6025_6024	p.R2008fs	0.001:0.000	NULL	pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_CUB_dom,smart_EF_hand_dom,smart_Znf_ZZ,pfscan_EF_hand_dom,pfscan_Znf_ZZ	-	no_errors	ZZEF1	HGNC	ENSG00000074755				44	0	0	25	5	16.6667
KCNH4	0	genome.wustl.edu	37	17	40328259	40328259	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40328259	40328259	C	-	DEL	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	frame_shift_del	c.642	p.S215fs	0.999	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558				216	0	0	138	56	28.866
WNK4	0	genome.wustl.edu	37	17	40939869	40939870	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	40939869	40939870	-	G	INS	WNK4	ENST00000246914	human	ensembl	74_37	+1	known	frame_shift_ins	c.1815_1816	p.V607fs	0.144:0.004	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK4	HGNC	ENSG00000126562				98	0	0	44	35	44.3038
AOC3	0	genome.wustl.edu	37	17	41004674	41004674	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	41004674	41004674	C	-	DEL	AOC3	ENST00000308423	human	ensembl	74_37	+1	known	frame_shift_del	c.1314	p.L440fs	0.019	pfam_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_C,prints_Cu_amine_oxidase	pfam_Cu_amine_oxidase_C,pfam_Cu_amine_oxidase_N2,pfam_Cu_amine_oxidase_N3,superfamily_Cu_amine_oxidase_C,superfamily_Cu_amine_oxidase_N-reg,prints_Cu_amine_oxidase	-	no_errors	AOC3	HGNC	ENSG00000131471				85	0	0	57	22	27.8481
PELP1	0	genome.wustl.edu	37	17	4575894	4575894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	4575894	4575894	G	-	DEL	PELP1	ENST00000301396	human	ensembl	74_37	-1	known	frame_shift_del	c.2824	p.L942fs	0.989	NULL	pfam_Uncharacterised_NUC202,superfamily_ARM-type_fold	-	no_errors	PELP1	HGNC	ENSG00000141456				27	0	0	27	19	41.3043
CAMTA2	0	genome.wustl.edu	37	17	4875738	4875738	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	4875738	4875738	G	-	DEL	CAMTA2	ENST00000414043	human	ensembl	74_37	-1	known	frame_shift_del	c.2666	p.P889fs	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509				29	0	0	17	7	29.1667
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				152	1	0.653595	75	96	56.1404
PRR11	0	genome.wustl.edu	37	17	57247171	57247171	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	57247171	57247171	A	-	DEL	PRR11	ENST00000262293	human	ensembl	74_37	+1	known	frame_shift_del	c.58	p.E23fs	0.749	NULL	NULL	-	no_errors	PRR11	HGNC	ENSG00000068489				75	0	0	44	20	31.25
TBX4	0	genome.wustl.edu	37	17	59560345	59560345	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	59560345	59560345	C	-	DEL	TBX4	ENST00000393853	human	ensembl	74_37	+1	known	frame_shift_del	c.1109	p.P372fs	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075				25	0	0	27	14	34.1463
ENSG00000263887	0	genome.wustl.edu	37	17	60362751	60362752	+	RNA	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	60362751	60362752	-	T	INS	ENSG00000263887	ENST00000602493	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RP11-51L5.5	Clone_based_vega_gene	ENSG00000263887				157	0	0	143	42	22.7027
LRRC37A3	0	genome.wustl.edu	37	17	62856650	62856651	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	62856650	62856651	-	T	INS	LRRC37A3	ENST00000319651	human	ensembl	74_37	-1	known	frame_shift_ins	c.3614_3613	p.R1205fs	0.016:0.008	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809				179	0	0	112	55	32.9341
AXIN2	0	genome.wustl.edu	37	17	63532585	63532585	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	63532585	63532585	C	-	DEL	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	frame_shift_del	c.1994	p.G665fs	0.436	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646				67	0	0	42	26	38.2353
BPTF	0	genome.wustl.edu	37	17	65899951	65899951	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	65899951	65899951	A	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	frame_shift_del	c.2968	p.E993fs	0.993	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634				25	0	0	16	13	44.8276
C17orf58	0	genome.wustl.edu	37	17	65989061	65989061	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	65989061	65989061	A	-	DEL	C17orf58	ENST00000334461	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.W68fs	0.000	NULL	NULL	-	no_errors	C17orf58	HGNC	ENSG00000186665				85	0	0	54	25	31.6456
C17orf80	0	genome.wustl.edu	37	17	71233115	71233115	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	71233115	71233115	G	-	DEL	C17orf80	ENST00000359042	human	ensembl	74_37	+1	known	frame_shift_del	c.1494	p.E500fs	0.425	NULL	NULL	-	no_errors	C17orf80	HGNC	ENSG00000141219				57	0	0	33	18	35.2941
PHF23	0	genome.wustl.edu	37	17	7139520	7139520	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7139520	7139520	G	-	DEL	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	frame_shift_del	c.726	p.S243fs	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633				163	0	0	108	47	30.3226
YBX2	0	genome.wustl.edu	37	17	7193758	7193758	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7193758	7193758	G	-	DEL	YBX2	ENST00000007699	human	ensembl	74_37	-1	known	frame_shift_del	c.556	p.R186fs	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX2	HGNC	ENSG00000006047				101	0	0	68	32	32
GPS2	0	genome.wustl.edu	37	17	7217257	7217258	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7217257	7217258	CT	-	DEL	GPS2	ENST00000380728	human	ensembl	74_37	-1	known	frame_shift_del	c.448_447	p.R149fs	1.000:1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522				156	0	0	121	52	30.0578
NEURL4	0	genome.wustl.edu	37	17	7231005	7231005	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7231005	7231005	C	-	DEL	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	frame_shift_del	c.481	p.V161fs	1.000	superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				185	0	0	124	13	9.48905
GALR2	0	genome.wustl.edu	37	17	74072797	74072797	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	74072797	74072797	G	-	DEL	GALR2	ENST00000329003	human	ensembl	74_37	+1	known	frame_shift_del	c.449	p.L152fs	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Galanin_rcpt,prints_GAL2_rcpt	-	no_errors	GALR2	HGNC	ENSG00000182687				51	0	0	30	14	31.8182
POLR2A	0	genome.wustl.edu	37	17	7417102	7417102	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	7417102	7417102	C	-	DEL	POLR2A	ENST00000322644	human	ensembl	74_37	+1	known	frame_shift_del	c.5519	p.P1841fs	1.000	pfam_RNA_pol_II_repeat_euk	pfam_RNA_pol_Rpb1_1,pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_Rpb1_6,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_7,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_II_repeat_euk,smart_RNA_pol_N	-	no_errors	POLR2A	HGNC	ENSG00000181222				181	0	0	169	18	9.62567
PRPSAP1	0	genome.wustl.edu	37	17	74328436	74328437	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	74328436	74328437	-	C	INS	PRPSAP1	ENST00000446526	human	ensembl	74_37	-1	known	frame_shift_ins	c.371_370	p.V124fs	1.000:1.000	tigrfam_Rib-P_diPkinase	tigrfam_Rib-P_diPkinase	-	no_errors	PRPSAP1	HGNC	ENSG00000161542				114	0	0	87	45	34.0909
TNRC6C	0	genome.wustl.edu	37	17	76046980	76046980	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	76046980	76046980	A	-	DEL	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	frame_shift_del	c.1837	p.N615fs	0.960	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687				109	0	0	35	56	61.5385
USP36	0	genome.wustl.edu	37	17	76799940	76799942	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	76799940	76799942	GGA	-	DEL	USP36	ENST00000312010	human	ensembl	74_37	-1	known	in_frame_del	c.2337_2335	p.S779in_frame_del	0.000:0.000:0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				103	0	0	76	31	28.972
TBC1D16	0	genome.wustl.edu	37	17	77922699	77922699	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	77922699	77922699	C	-	DEL	TBC1D16	ENST00000310924	human	ensembl	74_37	-1	known	frame_shift_del	c.1513	p.E505fs	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D16	HGNC	ENSG00000167291				113	0	0	89	42	32.0611
RNF213	0	genome.wustl.edu	37	17	78314019	78314019	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	78314019	78314019	C	-	DEL	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	frame_shift_del	c.5852	p.Q1953fs	0.052	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821				61	0	0	45	14	23.7288
BAHCC1	0	genome.wustl.edu	37	17	79411577	79411578	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79411577	79411578	-	GG	INS	BAHCC1	ENST00000307745	human	ensembl	74_37	+1	known	frame_shift_ins	c.2495_2496	p.H835fs	1.000:1.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	RP11-1055B8.7	Clone_based_vega_gene	ENSG00000171282				13	0	0	7	3	30
TSPAN10	0	genome.wustl.edu	37	17	79612444	79612445	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	79612444	79612445	-	T	INS	TSPAN10	ENST00000328585	human	ensembl	74_37	+1	known	frame_shift_ins	c.463_464	p.G155fs	0.221:0.216	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN10	HGNC	ENSG00000182612				22	0	0	11	4	26.6667
VAMP2	0	genome.wustl.edu	37	17	8065661	8065661	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	17	8065661	8065661	G	-	DEL	VAMP2	ENST00000316509	human	ensembl	74_37	-1	known	frame_shift_del	c.29	p.P10fs	0.998	pirsf_Synaptobrevin_met/fun	pfam_Synaptobrevin,pirsf_Synaptobrevin_met/fun,pfscan_Synaptobrevin,prints_Synaptobrevin	-	no_errors	VAMP2	HGNC	ENSG00000220205				38	0	0	34	14	29.1667
SPIRE1	0	genome.wustl.edu	37	18	12453139	12453140	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	12453139	12453140	-	A	INS	SPIRE1	ENST00000409402	human	ensembl	74_37	-1	known	splice_site_ins	c.1777-3_1777-2	e14-2	1.000:0.843	-	-	-	no_errors	SPIRE1	HGNC	ENSG00000134278				45	0	0	16	10	38.4615
FAM210A	0	genome.wustl.edu	37	18	13681751	13681751	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	13681751	13681751	T	-	DEL	FAM210A	ENST00000322247	human	ensembl	74_37	-1	known	frame_shift_del	c.326	p.K109fs	0.991	NULL	pfam_DUF1279	-	no_errors	FAM210A	HGNC	ENSG00000177150				170	1	0.584795	106	64	37.6471
ANKRD20A5P	0	genome.wustl.edu	37	18	14225639	14225639	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	14225639	14225639	A	-	DEL	ANKRD20A5P	ENST00000577614	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.184	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481				16	0	0	16	8	33.3333
RBBP8	0	genome.wustl.edu	37	18	20572853	20572853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	20572853	20572853	A	-	DEL	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.K357fs	0.002	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773				96	0	0	57	40	41.2371
TRAPPC8	0	genome.wustl.edu	37	18	29453418	29453418	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	29453418	29453418	A	-	DEL	TRAPPC8	ENST00000283351	human	ensembl	74_37	-1	known	frame_shift_del	c.2037	p.F679fs	1.000	NULL	NULL	-	no_errors	TRAPPC8	HGNC	ENSG00000153339				35	0	0	31	14	31.1111
WBP11P1	0	genome.wustl.edu	37	18	30092428	30092428	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	30092428	30092428	C	-	DEL	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389				96	0	0	48	27	36
MYOM1	0	genome.wustl.edu	37	18	3083990	3083990	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	3083990	3083990	T	-	DEL	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	frame_shift_del	c.4375	p.I1459fs	0.998	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605				14	0	0	12	4	25
CCDC178	0	genome.wustl.edu	37	18	30926269	30926270	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	30926269	30926270	-	A	INS	CCDC178	ENST00000406524	human	ensembl	74_37	-1	known	frame_shift_ins	c.564_563	p.L188fs	0.196:0.868	NULL	NULL	-	no_errors	CCDC178	HGNC	ENSG00000166960				73	0	0	46	38	45.2381
ZBTB7C	0	genome.wustl.edu	37	18	45567085	45567085	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	45567085	45567085	C	-	DEL	ZBTB7C	ENST00000332053	human	ensembl	74_37	-1	known	frame_shift_del	c.394	p.D132fs	0.050	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7C	HGNC	ENSG00000184828				38	0	0	17	8	32
ENSG00000267040	0	genome.wustl.edu	37	18	55335787	55335789	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	55335787	55335789	AAA	-	DEL	ENSG00000267040	ENST00000592201	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	RP11-35G9.3	Clone_based_vega_gene	ENSG00000267040				30	0	0	28	14	33.3333
LMAN1	0	genome.wustl.edu	37	18	57013194	57013194	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	57013194	57013194	T	-	DEL	LMAN1	ENST00000251047	human	ensembl	74_37	-1	known	frame_shift_del	c.912	p.E305fs	0.898	superfamily_HMG_box_dom	pfam_Lectin_leg,superfamily_ConA-like_lec_gl_sf,superfamily_HMG_box_dom	-	no_errors	LMAN1	HGNC	ENSG00000074695				119	0	0	69	31	31
CDH7	0	genome.wustl.edu	37	18	63526952	63526953	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	63526952	63526953	-	A	INS	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	frame_shift_ins	c.1503_1504	p.I502fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138				38	0	0	12	12	50
RTTN	0	genome.wustl.edu	37	18	67869206	67869207	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	18	67869206	67869207	-	T	INS	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	frame_shift_ins	c.411_410	p.N137fs	0.098:0.103	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225				34	0	0	40	12	23.0769
SLC44A2	0	genome.wustl.edu	37	19	10753993	10753994	+	Frame_Shift_Ins	INS	-	-	TAAG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	10753993	10753994	-	TAAG	INS	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	frame_shift_ins	c.2053_2054	p.P685fs	1.000:1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353				33	0	0	14	25	64.1026
ELAVL3	0	genome.wustl.edu	37	19	11577605	11577605	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	11577605	11577605	C	-	DEL	ELAVL3	ENST00000359227	human	ensembl	74_37	-1	known	frame_shift_del	c.47	p.G16fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_Hud_Sxl_RNA,tigrfam_ELAD_HUD_SF	-	no_errors	ELAVL3	HGNC	ENSG00000196361				16	0	0	11	11	50
ZNF799	0	genome.wustl.edu	37	19	12502590	12502590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	12502590	12502590	A	-	DEL	ZNF799	ENST00000430385	human	ensembl	74_37	-1	known	frame_shift_del	c.622	p.W208fs	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF799	HGNC	ENSG00000196466				127	1	0.78125	55	64	53.7815
NACC1	0	genome.wustl.edu	37	19	13248179	13248181	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	13248179	13248181	CTT	-	DEL	NACC1	ENST00000292431	human	ensembl	74_37	+1	known	in_frame_del	c.1215_1217	p.F407in_frame_del	1.000:1.000:1.000	pfam_BEN_domain	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC1	HGNC	ENSG00000160877				107	0	0	36	38	51.3514
CACNA1A	0	genome.wustl.edu	37	19	13395983	13395983	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	13395983	13395983	T	-	DEL	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	frame_shift_del	c.3591	p.E1198fs	1.000	prints_VDCC_P/Q_a1su	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837				64	0	0	28	50	64.1026
PKN1	0	genome.wustl.edu	37	19	14562741	14562741	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	14562741	14562741	C	-	DEL	PKN1	ENST00000342216	human	ensembl	74_37	+1	known	frame_shift_del	c.1089	p.F366fs	0.060	superfamily_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN1	HGNC	ENSG00000123143				38	0	0	31	6	16.2162
CPAMD8	0	genome.wustl.edu	37	19	17100545	17100545	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	17100545	17100545	C	-	DEL	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	frame_shift_del	c.1444	p.A482fs	1.000	NULL	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				53	0	0	33	14	29.7872
CRTC1	0	genome.wustl.edu	37	19	18879554	18879554	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	18879554	18879554	C	-	DEL	CRTC1	ENST00000338797	human	ensembl	74_37	+1	known	frame_shift_del	c.1319	p.P442fs	1.000	NULL	NULL	-	no_errors	CRTC1	HGNC	ENSG00000105662				21	0	0	17	3	15
NR2C2AP	0	genome.wustl.edu	37	19	19312842	19312842	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	19312842	19312842	G	-	DEL	NR2C2AP	ENST00000331552	human	ensembl	74_37	-1	known	frame_shift_del	c.312	p.I105fs	0.037	superfamily_Galactose-bd-like	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like	-	no_errors	NR2C2AP	HGNC	ENSG00000184162				121	0	0	87	23	20.9091
TLE2	0	genome.wustl.edu	37	19	3028803	3028804	+	Splice_Site	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	3028803	3028804	-	G	INS	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	splice_site_ins	c.25-3_25-2	e2-2	1.000:0.958	-	-	-	no_errors	TLE2	HGNC	ENSG00000065717				143	0	0	77	33	30
KIAA0355	0	genome.wustl.edu	37	19	34833075	34833075	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	34833075	34833075	C	-	DEL	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	frame_shift_del	c.2236	p.P747fs	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398				281	0	0	184	59	24.2798
ATP4A	0	genome.wustl.edu	37	19	36050958	36050958	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	36050958	36050958	C	-	DEL	ATP4A	ENST00000262623	human	ensembl	74_37	-1	known	frame_shift_del	c.805	p.V269fs	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATPase_P-typ_H/K-transp_N,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP4A	HGNC	ENSG00000105675				80	0	0	48	7	12.7273
SIPA1L3	0	genome.wustl.edu	37	19	38609984	38609985	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	38609984	38609985	-	C	INS	SIPA1L3	ENST00000222345	human	ensembl	74_37	+1	known	frame_shift_ins	c.2330_2331	p.I780fs	1.000:0.898	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_DUF3401,pfam_Rap_GAP_dom,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L3	HGNC	ENSG00000105738				160	1	0.621118	102	31	23.3083
POU2F2	0	genome.wustl.edu	37	19	42596302	42596302	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42596302	42596302	G	-	DEL	POU2F2	ENST00000342301	human	ensembl	74_37	-1	known	frame_shift_del	c.1319	p.P440fs	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU,prints_TF_octamer	-	no_errors	POU2F2	HGNC	ENSG00000028277				28	0	0	19	5	20.8333
CIC	0	genome.wustl.edu	37	19	42794441	42794441	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	42794441	42794441	C	-	DEL	CIC	ENST00000575354	human	ensembl	74_37	+1	known	frame_shift_del	c.1521	p.P509fs	0.126	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				134	0	0	61	41	40.1961
ZNF180	0	genome.wustl.edu	37	19	45004419	45004419	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	45004419	45004419	C	-	DEL	ZNF180	ENST00000585514	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF180	HGNC	ENSG00000167384				21	0	0	6	3	33.3333
PPP1R13L	0	genome.wustl.edu	37	19	45900258	45900259	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	45900258	45900259	-	G	INS	PPP1R13L	ENST00000360957	human	ensembl	74_37	-1	known	frame_shift_ins	c.257_256	p.R86fs	0.999:0.997	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13L	HGNC	ENSG00000104881				17	0	0	11	5	31.25
ZNF114	0	genome.wustl.edu	37	19	48789818	48789818	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48789818	48789818	T	-	DEL	ZNF114	ENST00000315849	human	ensembl	74_37	+1	known	frame_shift_del	c.937	p.Y315fs	0.070	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF114	HGNC	ENSG00000178150				60	0	0	49	33	40.2439
CYTH2	0	genome.wustl.edu	37	19	48981555	48981555	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	48981555	48981555	C	-	DEL	CYTH2	ENST00000427476	human	ensembl	74_37	+1	known	frame_shift_del	c.912	p.L306fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH2	HGNC	ENSG00000105443				87	0	0	51	39	43.3333
FAM83E	0	genome.wustl.edu	37	19	49104392	49104392	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49104392	49104392	G	-	DEL	FAM83E	ENST00000263266	human	ensembl	74_37	-1	known	frame_shift_del	c.1411	p.R471fs	0.000	NULL	pfam_DUF1669,superfamily_Acyl_CoA_acyltransferase	-	no_errors	FAM83E	HGNC	ENSG00000105523				79	0	0	48	14	22.5806
SPHK2	0	genome.wustl.edu	37	19	49131530	49131530	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49131530	49131530	G	-	DEL	SPHK2	ENST00000443164	human	ensembl	74_37	+1	known	frame_shift_del	c.1054	p.G353fs	0.998	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176				88	0	0	43	20	31.746
PPP1R15A	0	genome.wustl.edu	37	19	49377242	49377242	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49377242	49377242	G	-	DEL	PPP1R15A	ENST00000200453	human	ensembl	74_37	+1	known	frame_shift_del	c.752	p.R251fs	0.001	NULL	pfam_Prot_Pase1_reg-su15A/B_C	-	no_errors	PPP1R15A	HGNC	ENSG00000087074				52	0	0	50	28	35.8974
BAX	0	genome.wustl.edu	37	19	49458971	49458971	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49458971	49458971	G	-	DEL	BAX	ENST00000293288	human	ensembl	74_37	+1	known	frame_shift_del	c.114	p.E41fs	0.588	NULL	pfam_Blc2_fam,pfscan_Bcl2-like,prints_Blc2_fam	-	no_errors	BAX	HGNC	ENSG00000087088				92	0	0	21	48	69.5652
TEAD2	0	genome.wustl.edu	37	19	49850473	49850473	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49850473	49850473	G	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883	p.H295fs	0.961	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219				317	1	0.314465	202	65	24.3446
SLC17A7	0	genome.wustl.edu	37	19	49933806	49933806	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	49933806	49933806	G	-	DEL	SLC17A7	ENST00000221485	human	ensembl	74_37	-1	known	frame_shift_del	c.1653	p.R552fs	0.428	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A7	HGNC	ENSG00000104888				39	0	0	21	9	30
SIGLEC16	0	genome.wustl.edu	37	19	50475183	50475183	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	50475183	50475183	C	-	DEL	SIGLEC16	ENST00000602139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.279	-	-	-	no_errors	SIGLEC16	HGNC	ENSG00000161643				40	0	0	23	17	42.5
SHANK1	0	genome.wustl.edu	37	19	51171804	51171804	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	51171804	51171804	G	-	DEL	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	frame_shift_del	c.3437	p.P1146fs	0.816	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				23	0	0	28	6	17.6471
LILRB1	0	genome.wustl.edu	37	19	55148385	55148385	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55148385	55148385	C	-	DEL	LILRB1	ENST00000462628	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LILRB1	HGNC	ENSG00000104972				24	0	0	25	5	16.6667
TMEM86B	0	genome.wustl.edu	37	19	55739642	55739642	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	55739642	55739642	C	-	DEL	TMEM86B	ENST00000327042	human	ensembl	74_37	-1	known	frame_shift_del	c.215	p.G72fs	0.017	pfam_YhhN	pfam_YhhN	-	no_errors	TMEM86B	HGNC	ENSG00000180089				18	0	0	13	8	38.0952
SAFB2	0	genome.wustl.edu	37	19	5587282	5587282	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	5587282	5587282	G	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2834	p.P945fs	0.100	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				22	0	0	11	11	50
SAFB2	0	genome.wustl.edu	37	19	5590343	5590343	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	5590343	5590343	C	-	DEL	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	frame_shift_del	c.2471	p.G824fs	0.985	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254				19	0	0	11	11	50
ZNF524	0	genome.wustl.edu	37	19	56113646	56113646	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56113646	56113646	C	-	DEL	ZNF524	ENST00000301073	human	ensembl	74_37	+1	known	frame_shift_del	c.168	p.K59fs	0.040	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF524	HGNC	ENSG00000171443				10	0	0	3	5	62.5
U2AF2	0	genome.wustl.edu	37	19	56173905	56173906	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56173905	56173906	-	G	INS	U2AF2	ENST00000308924	human	ensembl	74_37	+1	known	frame_shift_ins	c.524_525	p.L178fs	0.991:0.923	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_U2AF_lg	-	no_errors	U2AF2	HGNC	ENSG00000063244				78	0	0	63	22	25.8824
NLRP9	0	genome.wustl.edu	37	19	56249722	56249722	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	56249722	56249722	A	-	DEL	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	frame_shift_del	c.19	p.S7fs	0.009	superfamily_DEATH-like_dom,pfscan_DAPIN	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				126	0	0	94	24	20.339
HSD11B1L	0	genome.wustl.edu	37	19	5687962	5687962	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	19	5687962	5687962	G	-	DEL	HSD11B1L	ENST00000423665	human	ensembl	74_37	+1	known	frame_shift_del	c.704	p.V237fs	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	-	no_errors	HSD11B1L	HGNC	ENSG00000167733				9	0	0	3	3	50
NMS	0	genome.wustl.edu	37	2	101090003	101090004	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	101090003	101090004	-	A	INS	NMS	ENST00000376865	human	ensembl	74_37	+1	known	splice_site_ins	c.183+2_183+1	e3+2	0.059:0.033	-	-	-	no_errors	NMS	HGNC	ENSG00000204640				29	0	0	25	7	21.875
SLC20A1	0	genome.wustl.edu	37	2	113416607	113416608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	113416607	113416608	AG	-	DEL	SLC20A1	ENST00000272542	human	ensembl	74_37	+1	known	frame_shift_del	c.984_985	p.R332fs	0.023:0.531	pfam_Phos_transporter	pfam_Phos_transporter	-	no_errors	SLC20A1	HGNC	ENSG00000144136				81	0	0	53	27	33.75
RABL2A	0	genome.wustl.edu	37	2	114398869	114398869	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	114398869	114398869	C	-	DEL	RABL2A	ENST00000477218	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.058	-	-	-	no_errors	RABL2A	HGNC	ENSG00000144134				56	0	0	25	29	53.7037
SLC35F5	0	genome.wustl.edu	37	2	114500277	114500278	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	114500277	114500278	AA	-	DEL	SLC35F5	ENST00000245680	human	ensembl	74_37	-1	known	frame_shift_del	c.742_741	p.F247fs	1.000:1.000	pfam_DMT	pfam_DMT	-	no_errors	SLC35F5	HGNC	ENSG00000115084				85	0	0	85	44	34.1085
PTPN4	0	genome.wustl.edu	37	2	120672766	120672767	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	120672766	120672767	-	A	INS	PTPN4	ENST00000263708	human	ensembl	74_37	+1	known	frame_shift_ins	c.776_777	p.I261fs	1.000:1.000	pfam_FERM_PH-like_C,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	PTPN4	HGNC	ENSG00000088179				62	0	0	41	15	26.7857
TSN	0	genome.wustl.edu	37	2	122522936	122522936	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	122522936	122522936	A	-	DEL	TSN	ENST00000389682	human	ensembl	74_37	+1	known	frame_shift_del	c.680	p.K228fs	0.998	NULL	pfam_Translin,superfamily_Translin	-	no_errors	TSN	HGNC	ENSG00000211460				70	0	0	48	20	29.4118
NCKAP5	0	genome.wustl.edu	37	2	133751755	133751755	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	133751755	133751755	T	-	DEL	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	frame_shift_del	c.399	p.E134fs	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771				12	0	0	5	4	44.4444
FAM84A	0	genome.wustl.edu	37	2	14774272	14774273	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	14774272	14774273	-	C	INS	FAM84A	ENST00000295092	human	ensembl	74_37	+1	known	frame_shift_ins	c.169_170	p.G61fs	0.981:0.532	NULL	pfam_LRAT-like_dom	-	no_errors	FAM84A	HGNC	ENSG00000162981				47	0	0	27	14	34.1463
ACVR2A	0	genome.wustl.edu	37	2	148657041	148657041	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	148657041	148657041	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.278	p.D96fs	1.000	pfam_Activin_rcpt,prints_TGFB_receptor	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				93	0	0	68	31	31.3131
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989				105	0	0	72	36	33.3333
EPC2	0	genome.wustl.edu	37	2	149447829	149447829	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	149447829	149447829	A	-	DEL	EPC2	ENST00000258484	human	ensembl	74_37	+1	known	frame_shift_del	c.200	p.E70fs	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC2	HGNC	ENSG00000135999				55	0	0	46	30	39.4737
RIF1	0	genome.wustl.edu	37	2	152324641	152324643	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	152324641	152324643	CTC	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	in_frame_del	c.6728_6730	p.P2244in_frame_del	0.984:0.977:0.994	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				54	0	0	43	13	23.2143
RIF1	0	genome.wustl.edu	37	2	152326345	152326345	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	152326345	152326345	A	-	DEL	RIF1	ENST00000243326	human	ensembl	74_37	+1	known	frame_shift_del	c.7062	p.K2356fs	0.991	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345				79	0	0	91	7	7.14286
MYCN	0	genome.wustl.edu	37	2	16082314	16082314	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	16082314	16082314	C	-	DEL	MYCN	ENST00000281043	human	ensembl	74_37	+1	known	frame_shift_del	c.128	p.P45fs	1.000	pfam_Tscrpt_reg_Myc_N,prints_Tscrpt_reg_Myc	pfam_Tscrpt_reg_Myc_N,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom,prints_Tscrpt_reg_Myc	-	no_errors	MYCN	HGNC	ENSG00000134323				46	0	0	54	9	14.2857
COBLL1	0	genome.wustl.edu	37	2	165551296	165551296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	165551296	165551296	A	-	DEL	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_del	c.2921	p.L974fs	0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438				43	0	0	30	18	37.5
NOSTRIN	0	genome.wustl.edu	37	2	169699563	169699563	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	169699563	169699563	A	-	DEL	NOSTRIN	ENST00000444448	human	ensembl	74_37	+1	known	frame_shift_del	c.566	p.N191fs	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_FCH_dom,superfamily_SH3_domain,superfamily_HR1_rho-bd,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NOSTRIN	HGNC	ENSG00000163072				39	0	0	27	16	37.2093
FKBP7	0	genome.wustl.edu	37	2	179330469	179330472	+	RNA	DEL	AAAA	AAAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAAA	AAAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179330469	179330472	AAAA	-	DEL	FKBP7	ENST00000464248	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	FKBP7	HGNC	ENSG00000079150				25	0	0	14	12	46.1538
TTN-AS1	0	genome.wustl.edu	37	2	179392052	179392052	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179392052	179392052	A	-	DEL	TTN-AS1	ENST00000587576	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	TTN-AS1	HGNC	ENSG00000237298				16	0	0	18	6	25
TTN	0	genome.wustl.edu	37	2	179518593	179518593	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	179518593	179518593	T	-	DEL	TTN	ENST00000589042	human	ensembl	74_37	-1	putative	frame_shift_del	c.38496	p.E12833fs	0.469	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_PPAK_motif,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,superfamily_ARM-type_fold,superfamily_P-loop_NTPase,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				124	0	0	92	14	13.2075
FSIP2	0	genome.wustl.edu	37	2	186678578	186678578	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	186678578	186678578	T	-	DEL	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	frame_shift_del	c.20401	p.L6802fs	0.000	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738				81	0	0	69	36	34.2857
SGOL2	0	genome.wustl.edu	37	2	201436992	201436992	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	201436992	201436992	A	-	DEL	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	frame_shift_del	c.1923	p.G644fs	0.002	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535				134	1	0.740741	95	7	6.86275
INO80D	0	genome.wustl.edu	37	2	206869880	206869883	+	Frame_Shift_Del	DEL	AAGT	AAGT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAGT	AAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	206869880	206869883	AAGT	-	DEL	INO80D	ENST00000403263	human	ensembl	74_37	-1	known	frame_shift_del	c.2296_2293	p.T765fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	INO80D	HGNC	ENSG00000114933				69	0	0	51	19	27.1429
ADAM23	0	genome.wustl.edu	37	2	207460861	207460861	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	207460861	207460861	C	-	DEL	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	frame_shift_del	c.2334	p.K781fs	0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948				48	0	0	40	6	13.0435
APOB	0	genome.wustl.edu	37	2	21247750	21247751	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	21247750	21247751	-	A	INS	APOB	ENST00000399256	human	ensembl	74_37	-1	putative	splice_site_ins	c.2405-3_2405-2	e17-2	0.000:0.002	-	-	-	no_errors	APOB	HGNC	ENSG00000084674				76	0	0	45	19	29.6875
BARD1	0	genome.wustl.edu	37	2	215645975	215645975	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	215645975	215645975	T	-	DEL	BARD1	ENST00000260947	human	ensembl	74_37	-1	known	frame_shift_del	c.623	p.K208fs	0.996	NULL	pfam_Ankyrin_rpt,pfam_BRCT_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_BRCT_dom,smart_Ankyrin_rpt,smart_BRCT_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BRCT_dom,pfscan_Znf_RING,prints_Ankyrin_rpt	-	no_errors	BARD1	HGNC	ENSG00000138376				58	0	0	41	27	39.7059
ARPC2	0	genome.wustl.edu	37	2	219110150	219110152	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	219110150	219110152	AAG	-	DEL	ARPC2	ENST00000295685	human	ensembl	74_37	+1	known	in_frame_del	c.557_559	p.E187in_frame_del	1.000:1.000:1.000	pfam_P34-arc	pfam_P34-arc	-	no_errors	ARPC2	HGNC	ENSG00000163466				151	0	0	86	52	37.6812
ZNF142	0	genome.wustl.edu	37	2	219508052	219508052	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	219508052	219508052	G	-	DEL	ZNF142	ENST00000411696	human	ensembl	74_37	-1	known	frame_shift_del	c.3187	p.Q1063fs	0.003	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF142	HGNC	ENSG00000115568				64	0	0	37	15	28.8462
TMEM198	0	genome.wustl.edu	37	2	220412523	220412523	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	220412523	220412523	G	-	DEL	TMEM198	ENST00000344458	human	ensembl	74_37	+1	known	frame_shift_del	c.462	p.G156fs	1.000	NULL	NULL	-	no_errors	TMEM198	HGNC	ENSG00000188760				56	0	0	30	10	25
SLC4A3	0	genome.wustl.edu	37	2	220494118	220494118	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	220494118	220494118	A	-	DEL	SLC4A3	ENST00000273063	human	ensembl	74_37	+1	known	frame_shift_del	c.470	p.H157fs	0.001	prints_Anion_exchange_3	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange_3,prints_Anion_exchange,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A3	HGNC	ENSG00000114923				23	0	0	11	7	38.8889
IRS1	0	genome.wustl.edu	37	2	227660270	227660270	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	227660270	227660270	C	-	DEL	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	frame_shift_del	c.3185	p.G1062fs	0.033	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				73	0	0	37	26	41.2698
ASXL2	0	genome.wustl.edu	37	2	25982513	25982513	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	25982513	25982513	T	-	DEL	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	frame_shift_del	c.777	p.R259fs	0.995	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970				81	0	0	57	38	40
MAPRE3	0	genome.wustl.edu	37	2	27248517	27248517	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	27248517	27248517	C	-	DEL	MAPRE3	ENST00000233121	human	ensembl	74_37	+1	known	frame_shift_del	c.536	p.C182fs	1.000	NULL	pfam_EB1_C,pfam_CH-domain,superfamily_CH-domain,superfamily_EB1_C,pfscan_CH-domain	-	no_errors	MAPRE3	HGNC	ENSG00000084764				105	0	0	43	33	43.4211
EMILIN1	0	genome.wustl.edu	37	2	27302078	27302079	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	27302078	27302079	-	C	INS	EMILIN1	ENST00000380320	human	ensembl	74_37	+1	known	frame_shift_ins	c.145_146	p.R51fs	0.126:0.118	NULL	pfam_EMI_domain,pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,pfscan_EMI_domain	-	no_errors	EMILIN1	HGNC	ENSG00000138080				32	0	0	23	9	28.125
FNDC4	0	genome.wustl.edu	37	2	27717517	27717517	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	27717517	27717517	G	-	DEL	FNDC4	ENST00000264703	human	ensembl	74_37	-1	known	frame_shift_del	c.30	p.S11fs	0.915	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226				12	0	0	10	5	33.3333
SIX3	0	genome.wustl.edu	37	2	45169458	45169458	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	45169458	45169458	C	-	DEL	SIX3	ENST00000260653	human	ensembl	74_37	+1	known	frame_shift_del	c.215	p.P74fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX3	HGNC	ENSG00000138083				30	0	0	14	7	33.3333
MSH6	0	genome.wustl.edu	37	2	48030639	48030640	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	48030639	48030640	-	C	INS	MSH6	ENST00000234420	human	ensembl	74_37	+1	known	frame_shift_ins	c.3253_3254	p.F1088fs	0.001:0.003	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,pirsf_DNA_mismatch_repair_Msh6	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_core,pfam_PWWP_dom,pfam_DNA_mismatch_repair_MutS_clamp,pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_PWWP_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C,pirsf_DNA_mismatch_repair_Msh6,pfscan_PWWP_dom	-	no_errors	MSH6	HGNC	ENSG00000116062				62	0	0	51	7	12.069
FBXO11	0	genome.wustl.edu	37	2	48059584	48059585	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	48059584	48059585	-	G	INS	FBXO11	ENST00000403359	human	ensembl	74_37	-1	known	frame_shift_ins	c.1302_1301	p.G435fs	1.000:1.000	superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_Carb-bd_sugar_hydrolysis-dom,smart_PbH1,tigrfam_Para_beta_helix_rpt-2	pfam_Znf_N-recognin,pfam_F-box_dom,superfamily_Pectin_lyase_fold/virulence,superfamily_F-box_dom,smart_F-box_dom,smart_PbH1,smart_Carb-bd_sugar_hydrolysis-dom,smart_Znf_N-recognin_met,pfscan_F-box_dom,pfscan_Znf_N-recognin,tigrfam_Para_beta_helix_rpt-2	-	no_errors	FBXO11	HGNC	ENSG00000138081				35	0	0	26	25	49.0196
BCL11A	0	genome.wustl.edu	37	2	60688969	60688969	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	60688969	60688969	G	-	DEL	BCL11A	ENST00000335712	human	ensembl	74_37	-1	known	frame_shift_del	c.1078	p.L360fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11A	HGNC	ENSG00000119866				84	0	0	63	29	31.5217
SNRNP27	0	genome.wustl.edu	37	2	70131463	70131463	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	70131463	70131463	T	-	DEL	SNRNP27	ENST00000409116	human	ensembl	74_37	+1	novel	frame_shift_del	c.426	p.S145fs	0.141	NULL	pfam_DUF1777	-	no_errors	SNRNP27	HGNC	ENSG00000124380				52	0	0	47	23	32.8571
ATP6V1B1	0	genome.wustl.edu	37	2	71191573	71191573	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	71191573	71191573	C	-	DEL	ATP6V1B1	ENST00000234396	human	ensembl	74_37	+1	known	frame_shift_del	c.1149	p.I386fs	0.999	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1_a/bsu_N,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_V1-cplx_bsu	-	no_errors	ATP6V1B1	HGNC	ENSG00000116039				107	0	0	62	24	27.907
TPRKB	0	genome.wustl.edu	37	2	73961623	73961623	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	73961623	73961623	T	-	DEL	TPRKB	ENST00000272424	human	ensembl	74_37	-1	known	frame_shift_del	c.74	p.N25fs	1.000	pfam_CGI121/TPRKB	pfam_CGI121/TPRKB	-	no_errors	TPRKB	HGNC	ENSG00000144034				110	0	0	86	26	23.2143
WBP1	0	genome.wustl.edu	37	2	74687410	74687410	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74687410	74687410	C	-	DEL	WBP1	ENST00000233615	human	ensembl	74_37	+1	known	frame_shift_del	c.412	p.P140fs	0.993	pfam_Uncharacterised_WW-bd	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1	HGNC	ENSG00000239779				169	1	0.588235	131	45	25.5682
DOK1	0	genome.wustl.edu	37	2	74781910	74781910	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	74781910	74781910	T	-	DEL	DOK1	ENST00000233668	human	ensembl	74_37	+1	known	frame_shift_del	c.29	p.L12fs	0.996	smart_Pleckstrin_homology	pfam_Insln_rcpt_S1,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,pfscan_Insln_rcpt_S1	-	no_errors	DOK1	HGNC	ENSG00000115325				43	0	0	27	16	37.2093
CTNNA2	0	genome.wustl.edu	37	2	80646692	80646693	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	80646692	80646693	AA	-	DEL	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	frame_shift_del	c.1358_1359	p.Q453fs	1.000:0.997	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				65	0	0	53	22	29.3333
IMMT	0	genome.wustl.edu	37	2	86400804	86400804	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	86400804	86400804	T	-	DEL	IMMT	ENST00000410111	human	ensembl	74_37	-1	known	frame_shift_del	c.390	p.K130fs	0.530	pfam_Mt-IM_prot_Mitofilin	pfam_Mt-IM_prot_Mitofilin	-	no_errors	IMMT	HGNC	ENSG00000132305				29	0	0	17	6	26.087
ANKRD20A8P	0	genome.wustl.edu	37	2	95483039	95483039	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	95483039	95483039	T	-	DEL	ANKRD20A8P	ENST00000432432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.232	-	-	-	no_errors	ANKRD20A8P	HGNC	ENSG00000229089				59	0	0	33	7	17.5
ADRA2B	0	genome.wustl.edu	37	2	96781111	96781111	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	96781111	96781111	C	-	DEL	ADRA2B	ENST00000409345	human	ensembl	74_37	-1	known	frame_shift_del	c.778	p.E260fs	0.023	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRA2B_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRA2B	HGNC	ENSG00000222040				48	0	0	22	15	40.5405
TAF1B	0	genome.wustl.edu	37	2	9989571	9989573	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	2	9989571	9989573	AAA	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	in_frame_del	c.187_189	p.K65in_frame_del	0.991:0.950:0.834	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750				12	0	0	18	4	18.1818
SIRPB1	0	genome.wustl.edu	37	20	1559235	1559235	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	1559235	1559235	G	-	DEL	SIRPB1	ENST00000381605	human	ensembl	74_37	-1	known	frame_shift_del	c.182	p.P61fs	0.010	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	SIRPB1	HGNC	ENSG00000101307				79	0	0	25	29	53.7037
DSTN	0	genome.wustl.edu	37	20	17581420	17581420	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	17581420	17581420	T	-	DEL	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_del	c.41	p.Y16fs	1.000	NULL	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				44	0	0	40	21	34.4262
DSTN	0	genome.wustl.edu	37	20	17581679	17581680	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	17581679	17581680	-	T	INS	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_ins	c.300_301	p.L102fs	1.000:1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				65	0	0	74	24	24.4898
DSTN	0	genome.wustl.edu	37	20	17581680	17581680	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	17581680	17581680	T	-	DEL	DSTN	ENST00000246069	human	ensembl	74_37	+1	known	frame_shift_del	c.301	p.L103fs	1.000	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	pfam_Actin-bd_cofilin/tropomyosin,smart_Actin-bd_cofilin/tropomyosin,prints_ADF/Cofilin/Destrin	-	no_errors	DSTN	HGNC	ENSG00000125868				65	0	0	70	28	28.5714
DZANK1	0	genome.wustl.edu	37	20	18414186	18414187	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	18414186	18414187	AA	-	DEL	DZANK1	ENST00000460891	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014:0.025	-	-	-	no_errors	DZANK1	HGNC	ENSG00000089091				8	0	0	4	4	50
CD93	0	genome.wustl.edu	37	20	23066469	23066469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	23066469	23066469	C	-	DEL	CD93	ENST00000246006	human	ensembl	74_37	-1	known	frame_shift_del	c.361	p.E121fs	0.689	pirsf_CD93/CD141,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pirsf_CD93/CD141,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810				9	0	0	7	4	36.3636
GZF1	0	genome.wustl.edu	37	20	23346169	23346171	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	23346169	23346171	GAA	-	DEL	GZF1	ENST00000338121	human	ensembl	74_37	+1	known	in_frame_del	c.1149_1151	p.K385in_frame_del	0.058:0.997:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	GZF1	HGNC	ENSG00000125812				148	0	0	93	40	30.0752
TGM6	0	genome.wustl.edu	37	20	2384126	2384126	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	2384126	2384126	C	-	DEL	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	frame_shift_del	c.1073	p.Q360fs	1.000	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948				87	0	0	66	26	28.2609
ENTPD6	0	genome.wustl.edu	37	20	25187894	25187894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	25187894	25187894	G	-	DEL	ENTPD6	ENST00000376652	human	ensembl	74_37	+1	known	frame_shift_del	c.237	p.A81fs	0.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586				69	0	0	47	18	27.6923
DEFB124	0	genome.wustl.edu	37	20	30060721	30060722	+	RNA	DEL	CA	CA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	30060721	30060722	CA	-	DEL	DEFB124	ENST00000481595	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.435:0.465	-	-	-	no_errors	DEFB124	HGNC	ENSG00000180383				23	0	0	15	14	48.2759
HM13	0	genome.wustl.edu	37	20	30142485	30142487	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	30142485	30142487	AAA	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172:0.159:0.155	-	-	-	no_errors	HM13	HGNC	ENSG00000101294				11	0	0	10	12	54.5455
MYLK2	0	genome.wustl.edu	37	20	30419541	30419542	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	30419541	30419542	AC	-	DEL	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	frame_shift_del	c.1460_1461	p.T488fs	1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				131	0	0	112	6	5.08475
BPIFA3	0	genome.wustl.edu	37	20	31805219	31805219	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	31805219	31805219	G	-	DEL	BPIFA3	ENST00000471233	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.742	-	-	-	no_errors	BPIFA3	HGNC	ENSG00000131059				11	0	0	9	8	47.0588
ZNF335	0	genome.wustl.edu	37	20	44598221	44598221	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	44598221	44598221	G	-	DEL	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	frame_shift_del	c.311	p.P104fs	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026				103	0	0	63	23	26.7442
DDX27	0	genome.wustl.edu	37	20	47858504	47858505	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	47858504	47858505	AA	-	DEL	DDX27	ENST00000371764	human	ensembl	74_37	+1	known	frame_shift_del	c.2065_2066	p.K691fs	1.000:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX27	HGNC	ENSG00000124228				102	1	0.970874	68	34	33.3333
DDX27	0	genome.wustl.edu	37	20	47860464	47860465	+	RNA	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	47860464	47860465	-	A	INS	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.005	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228				12	0	0	12	6	33.3333
ADNP	0	genome.wustl.edu	37	20	49520470	49520470	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	49520470	49520470	T	-	DEL	ADNP	ENST00000349014	human	ensembl	74_37	-1	known	frame_shift_del	c.64	p.I22fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126				31	0	0	39	14	26.4151
ZFP64	0	genome.wustl.edu	37	20	50769075	50769076	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	50769075	50769076	-	GG	INS	ZFP64	ENST00000216923	human	ensembl	74_37	-1	known	frame_shift_ins	c.1656_1655	p.Q553fs	0.000:0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP64	HGNC	ENSG00000020256				52	0	0	42	10	19.2308
ZNF831	0	genome.wustl.edu	37	20	57769140	57769140	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	57769140	57769140	G	-	DEL	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	frame_shift_del	c.3066	p.D1025fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				25	0	0	29	9	23.6842
TAF4	0	genome.wustl.edu	37	20	60575303	60575303	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	60575303	60575303	T	-	DEL	TAF4	ENST00000252996	human	ensembl	74_37	-1	known	frame_shift_del	c.2664	p.K888fs	1.000	pfam_TAF4,superfamily_Histone-fold	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4	HGNC	ENSG00000130699				103	0	0	79	38	32.4786
OSBPL2	0	genome.wustl.edu	37	20	60854258	60854258	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	60854258	60854258	C	-	DEL	OSBPL2	ENST00000313733	human	ensembl	74_37	+1	known	frame_shift_del	c.537	p.I182fs	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd	-	no_errors	OSBPL2	HGNC	ENSG00000130703				99	0	0	85	21	19.8113
DIDO1	0	genome.wustl.edu	37	20	61512527	61512528	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	20	61512527	61512528	TC	-	DEL	DIDO1	ENST00000266070	human	ensembl	74_37	-1	known	frame_shift_del	c.4781_4780	p.D1594fs	0.171:0.244	NULL	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	DIDO1	HGNC	ENSG00000101191				35	0	0	24	14	36.8421
TPTE	0	genome.wustl.edu	37	21	10944697	10944697	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	10944697	10944697	A	-	DEL	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	frame_shift_del	c.537	p.F179fs	0.335	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157				244	0	0	233	34	12.7341
SCAF4	0	genome.wustl.edu	37	21	33074655	33074655	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	33074655	33074655	T	-	DEL	SCAF4	ENST00000286835	human	ensembl	74_37	-1	known	frame_shift_del	c.359	p.N120fs	1.000	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF4	HGNC	ENSG00000156304				60	0	0	53	29	35.3659
PIGP	0	genome.wustl.edu	37	21	38444815	38444815	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	38444815	38444815	T	-	DEL	PIGP	ENST00000464265	human	ensembl	74_37	-1	known	frame_shift_del	c.73	p.M25fs	1.000	pirsf_PIG-P_GPI19	pfam_PIG-P,pirsf_PIG-P_GPI19	-	no_errors	PIGP	HGNC	ENSG00000185808				253	0	0	159	95	37.4016
FLJ45139	0	genome.wustl.edu	37	21	40250362	40250363	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	40250362	40250363	AA	-	DEL	FLJ45139	ENST00000380931	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AF064858.6	Clone_based_vega_gene	ENSG00000205622				13	0	0	11	5	31.25
MX1	0	genome.wustl.edu	37	21	42824678	42824680	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	42824678	42824680	AGA	-	DEL	MX1	ENST00000398598	human	ensembl	74_37	+1	known	in_frame_del	c.1640_1642	p.K548in_frame_del	0.905:0.907:0.894	pfam_Dynamin_central,superfamily_P-loop_NTPase	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_GED,prints_Dynamin_SF	-	no_errors	MX1	HGNC	ENSG00000157601				225	0	0	140	67	32.3671
ZBTB21	0	genome.wustl.edu	37	21	43413803	43413803	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	43413803	43413803	T	-	DEL	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	frame_shift_del	c.402	p.V135fs	0.002	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276				66	0	0	35	22	38.5965
MCM3AP-AS1	0	genome.wustl.edu	37	21	47662900	47662902	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	21	47662900	47662902	AAA	-	DEL	MCM3AP-AS1	ENST00000421927	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors	MCM3AP-AS1	HGNC	ENSG00000215424				38	0	0	22	17	43.5897
ANKRD62P1-PARP4P3	0	genome.wustl.edu	37	22	17140438	17140438	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	17140438	17140438	T	-	DEL	ANKRD62P1-PARP4P3	ENST00000456726	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.042	-	-	-	no_errors	ANKRD62P1-PARP4P3	HGNC	ENSG00000189295				53	0	0	31	17	35.4167
GNAZ	0	genome.wustl.edu	37	22	23438487	23438488	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	23438487	23438488	-	G	INS	GNAZ	ENST00000248996	human	ensembl	74_37	+1	known	frame_shift_ins	c.605_606	p.Q205fs	1.000:1.000	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAZ	HGNC	ENSG00000128266				154	0	0	109	53	32.716
CABIN1	0	genome.wustl.edu	37	22	24573647	24573647	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	24573647	24573647	C	-	DEL	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	frame_shift_del	c.6381	p.L2129fs	0.995	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991				68	0	0	39	16	29.0909
RFPL1S	0	genome.wustl.edu	37	22	29835329	29835329	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	29835329	29835329	A	-	DEL	RFPL1S	ENST00000461286	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RFPL1S	HGNC	ENSG00000225465				10	0	0	2	6	75
OSBP2	0	genome.wustl.edu	37	22	31289120	31289120	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	31289120	31289120	C	-	DEL	OSBP2	ENST00000332585	human	ensembl	74_37	+1	known	frame_shift_del	c.1881	p.S630fs	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,superfamily_DNA-bd_dom_put,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBP2	HGNC	ENSG00000184792				53	0	0	16	25	60.9756
CBX6	0	genome.wustl.edu	37	22	39262729	39262729	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	39262729	39262729	G	-	DEL	CBX6	ENST00000407418	human	ensembl	74_37	-1	known	frame_shift_del	c.724	p.L242fs	0.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX6	HGNC	ENSG00000183741				72	0	0	54	22	28.9474
POLDIP3	0	genome.wustl.edu	37	22	42988010	42988011	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	42988010	42988011	-	T	INS	POLDIP3	ENST00000252115	human	ensembl	74_37	-1	known	frame_shift_ins	c.972_971	p.D325fs	0.993:1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	POLDIP3	HGNC	ENSG00000100227				145	0	0	60	95	61.2903
EFCAB6	0	genome.wustl.edu	37	22	44004420	44004420	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	44004420	44004420	C	-	DEL	EFCAB6	ENST00000262726	human	ensembl	74_37	-1	known	frame_shift_del	c.2623	p.A875fs	0.012	NULL	pfam_EF_hand_Ca-bd_contain_6,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB6	HGNC	ENSG00000186976				72	0	0	53	26	32.9114
CERK	0	genome.wustl.edu	37	22	47086002	47086002	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	47086002	47086002	C	-	DEL	CERK	ENST00000216264	human	ensembl	74_37	-1	known	frame_shift_del	c.1428	p.K477fs	0.009	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422				68	0	0	76	11	12.6437
TTLL8	0	genome.wustl.edu	37	22	50469119	50469120	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	22	50469119	50469120	-	G	INS	TTLL8	ENST00000266182	human	ensembl	74_37	-1	known	frame_shift_ins	c.1943_1942	p.L648fs	0.000:0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL8	HGNC	ENSG00000138892				10	0	0	4	5	55.5556
ZBTB20	0	genome.wustl.edu	37	3	114058003	114058003	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	114058003	114058003	G	-	DEL	ZBTB20	ENST00000474710	human	ensembl	74_37	-1	known	frame_shift_del	c.2075	p.P692fs	0.678	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB20	HGNC	ENSG00000181722				68	0	0	38	24	38.7097
EAF2	0	genome.wustl.edu	37	3	121573658	121573659	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	121573658	121573659	-	A	INS	EAF2	ENST00000273668	human	ensembl	74_37	+1	known	frame_shift_ins	c.326_327	p.T112fs	1.000:0.970	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF2	HGNC	ENSG00000145088				83	0	0	68	35	33.9806
PLXNA1	0	genome.wustl.edu	37	3	126735391	126735391	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	126735391	126735391	C	-	DEL	PLXNA1	ENST00000393409	human	ensembl	74_37	+1	known	frame_shift_del	c.3046	p.Q1019fs	0.981	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA1	HGNC	ENSG00000114554				132	0	0	71	27	27.551
SLC35G2	0	genome.wustl.edu	37	3	136573486	136573486	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	136573486	136573486	A	-	DEL	SLC35G2	ENST00000393079	human	ensembl	74_37	+1	known	frame_shift_del	c.184	p.66fs	1.000	NULL	pfam_DMT	-	no_errors	SLC35G2	HGNC	ENSG00000168917				135	1	0.735294	97	51	34.4595
ESYT3	0	genome.wustl.edu	37	3	138195072	138195072	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	138195072	138195072	T	-	DEL	ESYT3	ENST00000389567	human	ensembl	74_37	+1	known	frame_shift_del	c.2476	p.F827fs	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT3	HGNC	ENSG00000158220				64	0	0	53	31	36.9048
ENSG00000244327	0	genome.wustl.edu	37	3	142184164	142184165	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	142184164	142184165	AA	-	DEL	ENSG00000244327	ENST00000460977	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RP11-383G6.3	Clone_based_vega_gene	ENSG00000244327				13	0	0	13	7	35
DHX36	0	genome.wustl.edu	37	3	154042078	154042080	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	154042078	154042080	CCG	-	DEL	DHX36	ENST00000496811	human	ensembl	74_37	-1	known	in_frame_del	c.128_126	p.G46in_frame_del	0.510:0.499:0.398	NULL	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX36	HGNC	ENSG00000174953				83	0	0	51	25	32.8947
EAF1-AS1	0	genome.wustl.edu	37	3	15480599	15480599	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	15480599	15480599	T	-	DEL	EAF1-AS1	ENST00000494875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.925	-	-	-	no_errors	EAF1-AS1	HGNC	ENSG00000249786				20	0	0	15	5	25
TRIM59	0	genome.wustl.edu	37	3	160155773	160155774	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	160155773	160155774	-	G	INS	TRIM59	ENST00000309784	human	ensembl	74_37	-1	known	frame_shift_ins	c.1199_1198	p.I400fs	0.001:0.001	NULL	pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,smart_Znf_RING,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM59	HGNC	ENSG00000213186				48	0	0	30	16	34.7826
PLD1	0	genome.wustl.edu	37	3	171455827	171455828	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	171455827	171455828	-	T	INS	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	frame_shift_ins	c.15_14	p.N5fs	0.097:0.075	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651				83	0	0	57	19	25
LAMP3	0	genome.wustl.edu	37	3	182872079	182872079	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	182872079	182872079	T	-	DEL	LAMP3	ENST00000265598	human	ensembl	74_37	-1	known	frame_shift_del	c.150	p.K50fs	0.064	NULL	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081				122	0	0	85	39	31.4516
EHHADH	0	genome.wustl.edu	37	3	184910086	184910086	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	184910086	184910086	T	-	DEL	EHHADH	ENST00000231887	human	ensembl	74_37	-1	known	frame_shift_del	c.2100	p.K700fs	0.998	pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790				80	0	0	64	22	25.5814
PCYT1A	0	genome.wustl.edu	37	3	195966504	195966504	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	195966504	195966504	T	-	DEL	PCYT1A	ENST00000292823	human	ensembl	74_37	-1	known	frame_shift_del	c.811	p.S271fs	1.000	superfamily_NA-bd_OB-fold	pfam_Cyt_trans-like,superfamily_NA-bd_OB-fold,tigrfam_Cyt_trans-like	-	no_errors	PCYT1A	HGNC	ENSG00000161217				48	0	0	35	21	37.5
HMGB1P5	0	genome.wustl.edu	37	3	22423968	22423968	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	22423968	22423968	T	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967				50	0	0	31	18	36.7347
ZNF619	0	genome.wustl.edu	37	3	40528461	40528461	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	40528461	40528461	A	-	DEL	ZNF619	ENST00000447116	human	ensembl	74_37	+1	known	frame_shift_del	c.580	p.T195fs	0.056	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873				74	0	0	56	37	39.7849
TRAK1	0	genome.wustl.edu	37	3	42265237	42265238	+	RNA	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	42265237	42265238	-	T	INS	TRAK1	ENST00000487159	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	TRAK1	HGNC	ENSG00000182606				55	0	0	36	9	20
SUMF1	0	genome.wustl.edu	37	3	4494631	4494631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	4494631	4494631	A	-	DEL	SUMF1	ENST00000448413	human	ensembl	74_37	-1	known	frame_shift_del	c.373	p.Y125fs	1.000	pfam_FGE_dom,superfamily_C-type_lectin_fold	pfam_FGE_dom,superfamily_C-type_lectin_fold	-	no_errors	SUMF1	HGNC	ENSG00000144455				83	0	0	58	32	35.5556
NBEAL2	0	genome.wustl.edu	37	3	47042816	47042816	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	47042816	47042816	C	-	DEL	NBEAL2	ENST00000450053	human	ensembl	74_37	+1	known	frame_shift_del	c.4532	p.V1513fs	0.994	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NBEAL2	HGNC	ENSG00000160796				106	0	0	57	19	25
CELSR3	0	genome.wustl.edu	37	3	48699541	48699543	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	48699541	48699543	AAA	-	DEL	CELSR3	ENST00000544264	human	ensembl	74_37	-1	known	in_frame_del	c.527_525	p.F175in_frame_del	0.003:0.009:0.097	NULL	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC	ENSG00000008300				140	0	0	92	35	27.5591
IP6K2	0	genome.wustl.edu	37	3	48726979	48726980	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	48726979	48726980	CA	-	DEL	IP6K2	ENST00000328631	human	ensembl	74_37	-1	known	frame_shift_del	c.772_771	p.C257fs	1.000:0.995	pfam_IPK	pfam_IPK	-	no_errors	IP6K2	HGNC	ENSG00000068745				85	0	0	56	27	32.5301
DOCK3	0	genome.wustl.edu	37	3	51417604	51417604	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	51417604	51417604	C	-	DEL	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	frame_shift_del	c.5549	p.P1852fs	0.115	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538				69	0	0	17	18	51.4286
PRKCD	0	genome.wustl.edu	37	3	53215749	53215752	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	53215749	53215752	GTAA	-	DEL	PRKCD	ENST00000330452	human	ensembl	74_37	+1	known	splice_site_del	c.571+1_571+1	e5+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	PRKCD	HGNC	ENSG00000163932				43	0	0	40	17	29.8246
FLNB	0	genome.wustl.edu	37	3	58089787	58089788	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	58089787	58089788	-	G	INS	FLNB	ENST00000295956	human	ensembl	74_37	+1	known	frame_shift_ins	c.1585_1586	p.H532fs	1.000:1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNB	HGNC	ENSG00000136068				83	0	0	45	31	40.7895
ATXN7	0	genome.wustl.edu	37	3	63938154	63938156	+	In_Frame_Del	DEL	ATT	ATT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	ATT	ATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	63938154	63938156	ATT	-	DEL	ATXN7	ENST00000398590	human	ensembl	74_37	+1	known	in_frame_del	c.494_496	p.Y166in_frame_del	1.000:1.000:1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7	HGNC	ENSG00000163635				62	0	0	51	14	21.5385
PSMD6	0	genome.wustl.edu	37	3	64005085	64005086	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	64005085	64005086	AT	-	DEL	PSMD6	ENST00000295901	human	ensembl	74_37	-1	known	frame_shift_del	c.384_383	p.Y128fs	0.994:1.000	pfam_26S_proteasome_reg_su-Rpn7	pfam_26S_proteasome_reg_su-Rpn7,pfam_PCI_dom,smart_PCI_dom	-	no_errors	PSMD6	HGNC	ENSG00000163636				82	0	0	80	7	8.04598
SUCLG2	0	genome.wustl.edu	37	3	67570955	67570955	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	67570955	67570955	C	-	DEL	SUCLG2	ENST00000307227	human	ensembl	74_37	-1	known	frame_shift_del	c.521	p.G174fs	1.000	pfam_ATP-grasp_succ-CoA_synth-type,tigrfam_Succ_CoA_synthase_bsu	pfam_ATP-grasp_succ-CoA_synth-type,pfam_CoA_ligase,superfamily_Succinyl-CoA_synth-like,tigrfam_Succ_CoA_synthase_bsu	-	no_errors	SUCLG2	HGNC	ENSG00000172340				136	0	0	91	36	28.3465
UBA3	0	genome.wustl.edu	37	3	69129290	69129292	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	69129290	69129292	CTT	-	DEL	UBA3	ENST00000361055	human	ensembl	74_37	-1	known	in_frame_del	c.35_33	p.R13in_frame_del	1.000:1.000:1.000	NULL	pfam_ThiF_NAD_FAD-bd,pfam_E2_binding,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA3	HGNC	ENSG00000144744				75	0	0	54	14	20.5882
ARL13B	0	genome.wustl.edu	37	3	93761893	93761893	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	93761893	93761893	A	-	DEL	ARL13B	ENST00000394222	human	ensembl	74_37	+1	known	frame_shift_del	c.833	p.M280fs	0.983	NULL	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_SRP_receptor_beta_su,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL13B	HGNC	ENSG00000169379				36	0	0	21	10	32.2581
SETD5	0	genome.wustl.edu	37	3	9517295	9517295	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	9517295	9517295	C	-	DEL	SETD5	ENST00000402198	human	ensembl	74_37	+1	known	frame_shift_del	c.3849	p.S1286fs	0.997	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137				92	0	0	76	30	28.3019
FILIP1L	0	genome.wustl.edu	37	3	99568272	99568273	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	99568272	99568273	-	T	INS	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_ins	c.2248_2247	p.L749fs	1.000:1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386				142	1	0.699301	106	48	31.1688
IL17RC	0	genome.wustl.edu	37	3	9965696	9965696	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	3	9965696	9965696	A	-	DEL	IL17RC	ENST00000295981	human	ensembl	74_37	+1	known	frame_shift_del	c.967	p.N324fs	0.083	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702				96	0	0	63	32	33.6842
DAPP1	0	genome.wustl.edu	37	4	100789277	100789278	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	100789277	100789278	-	A	INS	DAPP1	ENST00000512369	human	ensembl	74_37	+1	known	frame_shift_ins	c.778_779	p.I261fs	1.000:1.000	smart_Pleckstrin_homology	pfam_SH2,pfam_Pleckstrin_homology,smart_SH2,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH2,prints_SH2	-	no_errors	DAPP1	HGNC	ENSG00000070190				80	0	0	74	28	27.451
BANK1	0	genome.wustl.edu	37	4	102951317	102951317	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	102951317	102951317	A	-	DEL	BANK1	ENST00000322953	human	ensembl	74_37	+1	known	frame_shift_del	c.1795	p.T601fs	0.978	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	BANK1	HGNC	ENSG00000153064				83	0	0	77	29	27.3585
SLC39A8	0	genome.wustl.edu	37	4	103189225	103189225	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	103189225	103189225	T	-	DEL	SLC39A8	ENST00000356736	human	ensembl	74_37	-1	known	frame_shift_del	c.852	p.E285fs	0.000	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A8	HGNC	ENSG00000138821				108	0	0	45	29	39.1892
SLC9B1	0	genome.wustl.edu	37	4	103870465	103870465	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	103870465	103870465	T	-	DEL	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	frame_shift_del	c.331	p.I111fs	0.045	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				168	0	0	151	44	22.5641
SLC9B1	0	genome.wustl.edu	37	4	103870488	103870489	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	103870488	103870489	-	A	INS	SLC9B1	ENST00000296422	human	ensembl	74_37	-1	known	frame_shift_ins	c.308_307	p.Y103fs	0.935:0.989	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger	-	no_errors	SLC9B1	HGNC	ENSG00000164037				108	0	0	100	25	20
TACR3	0	genome.wustl.edu	37	4	104640638	104640638	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	104640638	104640638	G	-	DEL	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	frame_shift_del	c.195	p.A66fs	0.059	prints_NK3_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				71	0	0	49	16	24.6154
INTS12	0	genome.wustl.edu	37	4	106621122	106621122	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	106621122	106621122	A	-	DEL	INTS12	ENST00000340139	human	ensembl	74_37	-1	known	frame_shift_del	c.41	p.L14fs	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	INTS12	HGNC	ENSG00000138785				152	0	0	138	50	26.5957
ARSJ	0	genome.wustl.edu	37	4	114823494	114823494	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	114823494	114823494	T	-	DEL	ARSJ	ENST00000315366	human	ensembl	74_37	-1	known	frame_shift_del	c.1736	p.K579fs	0.628	NULL	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSJ	HGNC	ENSG00000180801				29	0	0	27	12	30.7692
NDST4	0	genome.wustl.edu	37	4	115773883	115773884	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	115773883	115773884	-	T	INS	NDST4	ENST00000264363	human	ensembl	74_37	-1	known	frame_shift_ins	c.1814_1813	p.T605fs	1.000:1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST4	HGNC	ENSG00000138653				50	0	0	26	20	43.4783
SCLT1	0	genome.wustl.edu	37	4	129869675	129869675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	129869675	129869675	T	-	DEL	SCLT1	ENST00000281142	human	ensembl	74_37	-1	known	frame_shift_del	c.1269	p.A424fs	1.000	NULL	NULL	-	no_errors	SCLT1	HGNC	ENSG00000151466				55	0	0	30	12	28.5714
PCDH18	0	genome.wustl.edu	37	4	138452697	138452697	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	138452697	138452697	A	-	DEL	PCDH18	ENST00000344876	human	ensembl	74_37	-1	known	frame_shift_del	c.546	p.F182fs	0.005	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH18	HGNC	ENSG00000189184				53	0	0	33	20	37.7358
FNIP2	0	genome.wustl.edu	37	4	159782570	159782571	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	159782570	159782571	-	A	INS	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	frame_shift_ins	c.1294_1295	p.N434fs	1.000:1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795				46	0	0	30	20	40
NEK1	0	genome.wustl.edu	37	4	170428203	170428203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	170428203	170428203	T	-	DEL	NEK1	ENST00000507142	human	ensembl	74_37	-1	known	frame_shift_del	c.1992	p.V665fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601				10	0	0	23	5	17.8571
ADAM29	0	genome.wustl.edu	37	4	175898771	175898771	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	175898771	175898771	A	-	DEL	ADAM29	ENST00000359240	human	ensembl	74_37	+1	known	frame_shift_del	c.2095	p.S701fs	0.005	NULL	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594				39	0	0	23	14	37.8378
CCDC110	0	genome.wustl.edu	37	4	186379967	186379967	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	186379967	186379967	T	-	DEL	CCDC110	ENST00000307588	human	ensembl	74_37	-1	known	frame_shift_del	c.1774	p.T592fs	0.049	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	CCDC110	HGNC	ENSG00000168491				43	0	0	29	16	35.5556
GRK4	0	genome.wustl.edu	37	4	3040280	3040282	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	3040280	3040282	AAA	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003:0.005	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388				35	0	0	21	13	38.2353
KLF3	0	genome.wustl.edu	37	4	38691476	38691476	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	38691476	38691476	C	-	DEL	KLF3	ENST00000261438	human	ensembl	74_37	+1	known	frame_shift_del	c.671	p.P226fs	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF3	HGNC	ENSG00000109787				137	0	0	93	46	33.0935
UGDH	0	genome.wustl.edu	37	4	39505574	39505575	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	39505574	39505575	-	T	INS	UGDH	ENST00000316423	human	ensembl	74_37	-1	known	frame_shift_ins	c.1295_1294	p.M432fs	1.000:1.000	pfam_UDP-Glc/GDP-Man_DH_C,superfamily_UDP-Glc/GDP-Man_DH_C,tigrfam_UDP-Glc/GDP-Man	pfam_UDP-Glc/GDP-Man_DH_N,pfam_UDP-Glc/GDP-Man_DH_C,pfam_UDP-Glc/GDP-Man_DH_dimer,superfamily_UDP-Glc/GDP-Man_DH_C,superfamily_6-PGluconate_DH_C-like,tigrfam_UDP-Glc/GDP-Man	-	no_errors	UGDH	HGNC	ENSG00000109814				32	0	0	35	7	16.6667
LIMCH1	0	genome.wustl.edu	37	4	41605923	41605926	+	Splice_Site	DEL	GTAA	GTAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	41605923	41605926	GTAA	-	DEL	LIMCH1	ENST00000503057	human	ensembl	74_37	+1	known	splice_site_del	c.1+1_4	e0+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	LIMCH1	HGNC	ENSG00000064042				52	0	0	34	9	20.9302
KIAA1211	0	genome.wustl.edu	37	4	57179502	57179503	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	57179502	57179503	-	A	INS	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	frame_shift_ins	c.494_495	p.Q168fs	1.000:0.997	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				121	0	0	66	26	28.2609
REST	0	genome.wustl.edu	37	4	57798156	57798156	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	57798156	57798156	A	-	DEL	REST	ENST00000309042	human	ensembl	74_37	+1	known	frame_shift_del	c.3132	p.N1046fs	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	REST	HGNC	ENSG00000084093				38	0	0	42	10	19.2308
EPHA5	0	genome.wustl.edu	37	4	66467573	66467573	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	66467573	66467573	T	-	DEL	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	frame_shift_del	c.696	p.K232fs	0.986	pfam_Ephrin_rcpt_lig-bd_dom,smart_Ephrin_rcpt_lig-bd_dom,pirsf_Tyr_kinase_ephrin_rcpt	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242				39	0	0	34	22	39.2857
TMPRSS11A	0	genome.wustl.edu	37	4	68810346	68810346	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	68810346	68810346	T	-	DEL	TMPRSS11A	ENST00000334830	human	ensembl	74_37	-1	known	frame_shift_del	c.143	p.K48fs	0.055	pfam_SEA_dom,pirsf_Pept_S1A_HAT/DESC1	pfam_Peptidase_S1,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11A	HGNC	ENSG00000187054				30	0	0	26	18	40.9091
MUC7	0	genome.wustl.edu	37	4	71346700	71346701	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	71346700	71346701	-	C	INS	MUC7	ENST00000304887	human	ensembl	74_37	+1	known	frame_shift_ins	c.239_240	p.K83fs	0.000:0.000	NULL	NULL	-	no_errors	MUC7	HGNC	ENSG00000171195				119	0	0	72	37	33.945
AMTN	0	genome.wustl.edu	37	4	71394929	71394930	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	71394929	71394930	-	A	INS	AMTN	ENST00000339336	human	ensembl	74_37	+1	known	splice_site_ins	c.357+2_357+1	e6+2	1.000:0.995	-	-	-	no_errors	AMTN	HGNC	ENSG00000187689				11	0	0	13	5	27.7778
PCGF3	0	genome.wustl.edu	37	4	728799	728799	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	728799	728799	C	-	DEL	PCGF3	ENST00000362003	human	ensembl	74_37	+1	known	frame_shift_del	c.189	p.L65fs	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PCGF3	HGNC	ENSG00000185619				40	0	0	23	8	25.8065
CNOT6L	0	genome.wustl.edu	37	4	78697453	78697453	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	78697453	78697453	T	-	DEL	CNOT6L	ENST00000264903	human	ensembl	74_37	-1	known	frame_shift_del	c.99	p.K33fs	1.000	NULL	pfam_Endo/exonuclease/phosphatase,pfam_Leu-rich_rpt,superfamily_Endo/exonuclease/phosphatase,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNOT6L	HGNC	ENSG00000138767				115	0	0	105	48	31.3725
FRAS1	0	genome.wustl.edu	37	4	79410048	79410049	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	79410048	79410049	-	A	INS	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	frame_shift_ins	c.8772_8773	p.D2925fs	0.999:1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				28	0	0	18	13	41.9355
PRDM8	0	genome.wustl.edu	37	4	81123249	81123250	+	In_Frame_Ins	INS	-	-	CAG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	81123249	81123250	-	CAG	INS	PRDM8	ENST00000339711	human	ensembl	74_37	+1	known	in_frame_ins	c.633_634	p.215in_frame_insQ	0.000:0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM8	HGNC	ENSG00000152784				58	0	0	45	16	26.2295
THAP9	0	genome.wustl.edu	37	4	83838382	83838382	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	83838382	83838382	T	-	DEL	THAP9	ENST00000302236	human	ensembl	74_37	+1	known	frame_shift_del	c.1017	p.F341fs	0.996	NULL	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP9	HGNC	ENSG00000168152				137	0	0	108	40	27.027
CDS1	0	genome.wustl.edu	37	4	85530586	85530586	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	85530586	85530586	A	-	DEL	CDS1	ENST00000295887	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.N85fs	1.000	pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624				95	0	0	109	13	10.6557
ENSG00000273389	0	genome.wustl.edu	37	4	86921603	86921603	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	86921603	86921603	C	-	DEL	ENSG00000273389	ENST00000610225	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP13-514E23.2	Clone_based_vega_gene	ENSG00000273389				58	0	0	47	16	25.3968
GRID2	0	genome.wustl.edu	37	4	93225753	93225753	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	93225753	93225753	A	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208				23	0	0	5	12	70.5882
HPGDS	0	genome.wustl.edu	37	4	95239029	95239029	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	4	95239029	95239029	T	-	DEL	HPGDS	ENST00000295256	human	ensembl	74_37	-1	known	frame_shift_del	c.221	p.N74fs	0.997	NULL	pfam_Glutathione_S-Trfase_N,pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold	-	no_errors	HPGDS	HGNC	ENSG00000163106				39	0	0	36	14	28
ZNF608	0	genome.wustl.edu	37	5	123983920	123983920	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	123983920	123983920	T	-	DEL	ZNF608	ENST00000306315	human	ensembl	74_37	-1	known	frame_shift_del	c.2157	p.A720fs	0.999	NULL	NULL	-	no_errors	ZNF608	HGNC	ENSG00000168916				46	0	0	30	21	41.1765
RAPGEF6	0	genome.wustl.edu	37	5	130831315	130831315	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	130831315	130831315	A	-	DEL	RAPGEF6	ENST00000509018	human	ensembl	74_37	-1	known	frame_shift_del	c.1458	p.F486fs	0.999	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987				55	0	0	37	10	21.2766
RAD50	0	genome.wustl.edu	37	5	131931451	131931452	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	131931451	131931452	-	A	INS	RAD50	ENST00000265335	human	ensembl	74_37	+1	known	frame_shift_ins	c.2156_2157	p.K723fs	1.000:0.997	superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	pfam_Rad50_Zn_hook,superfamily_P-loop_NTPase,superfamily_Prefoldin,pfscan_Zn_hook_Rad50,tigrfam_Rad50_eukaryotes	-	no_errors	RAD50	HGNC	ENSG00000113522				93	0	0	64	24	27.2727
CTNNA1	0	genome.wustl.edu	37	5	138266535	138266535	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	138266535	138266535	A	-	DEL	CTNNA1	ENST00000302763	human	ensembl	74_37	+1	known	frame_shift_del	c.2209	p.N738fs	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115				117	0	0	63	23	26.7442
WDR55	0	genome.wustl.edu	37	5	140049102	140049102	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140049102	140049102	A	-	DEL	WDR55	ENST00000358337	human	ensembl	74_37	+1	known	frame_shift_del	c.1015	p.K341fs	1.000	pirsf_WD_repeat_p55	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p55,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR55	HGNC	ENSG00000120314				31	0	0	19	5	20.8333
PCDHB12	0	genome.wustl.edu	37	5	140588924	140588924	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140588924	140588924	G	-	DEL	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	frame_shift_del	c.445	p.G149fs	0.449	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				99	0	0	108	7	6.08696
PCDHGC3	0	genome.wustl.edu	37	5	140857742	140857742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	140857742	140857742	A	-	DEL	PCDHGC3	ENST00000308177	human	ensembl	74_37	+1	known	frame_shift_del	c.2059	p.N689fs	0.998	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGC3	HGNC	ENSG00000240184				268	0	0	172	77	30.9237
RBM27	0	genome.wustl.edu	37	5	145647320	145647321	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	145647320	145647321	AA	-	DEL	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_del	c.2440_2441	p.K816fs	1.000:1.000	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				63	0	0	61	28	31.4607
TCERG1	0	genome.wustl.edu	37	5	145886723	145886723	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	145886723	145886723	A	-	DEL	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	frame_shift_del	c.2863	p.K957fs	1.000	pfam_FF_domain,superfamily_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649				105	0	0	68	26	27.6596
GLRA1	0	genome.wustl.edu	37	5	151304199	151304199	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	151304199	151304199	A	-	DEL	GLRA1	ENST00000471351	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.977	-	-	-	no_errors	GLRA1	HGNC	ENSG00000145888				25	0	0	17	10	37.037
SPDL1	0	genome.wustl.edu	37	5	169015404	169015404	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	169015404	169015404	A	-	DEL	SPDL1	ENST00000510751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SPDL1	HGNC	ENSG00000040275				33	0	0	36	14	28
SH3PXD2B	0	genome.wustl.edu	37	5	171785810	171785810	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	171785810	171785810	C	-	DEL	SH3PXD2B	ENST00000311601	human	ensembl	74_37	-1	known	frame_shift_del	c.634	p.V212fs	0.909	NULL	pfam_SH3_domain,pfam_SH3_2,pfam_Phox,pfam_SH3-like_bac-type,pfam_DUF1058,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain	-	no_errors	SH3PXD2B	HGNC	ENSG00000174705				38	0	0	13	6	31.5789
ZNF354B	0	genome.wustl.edu	37	5	178309869	178309869	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	178309869	178309869	A	-	DEL	ZNF354B	ENST00000322434	human	ensembl	74_37	+1	known	frame_shift_del	c.416	p.N140fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354B	HGNC	ENSG00000178338				41	0	0	26	25	49.0196
IL7R	0	genome.wustl.edu	37	5	35874637	35874637	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	35874637	35874637	A	-	DEL	IL7R	ENST00000303115	human	ensembl	74_37	+1	known	frame_shift_del	c.793	p.R267fs	0.967	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3	-	no_errors	IL7R	HGNC	ENSG00000168685				93	0	0	76	25	24.7525
NIPBL	0	genome.wustl.edu	37	5	36985083	36985083	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	36985083	36985083	A	-	DEL	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	frame_shift_del	c.1801	p.K603fs	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				62	0	0	50	25	33.3333
EGFLAM	0	genome.wustl.edu	37	5	38407192	38407192	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	38407192	38407192	G	-	DEL	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	frame_shift_del	c.1091	p.G366fs	0.996	smart_EG-like_dom,pfscan_EG-like_dom	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318				65	0	0	47	14	22.9508
PLK2	0	genome.wustl.edu	37	5	57753011	57753012	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	57753011	57753012	-	A	INS	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	frame_shift_ins	c.1005_1004	p.L335fs	1.000:1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632				42	0	0	32	17	34.6939
MAST4	0	genome.wustl.edu	37	5	66459717	66459718	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	66459717	66459718	AG	-	DEL	MAST4	ENST00000404260	human	ensembl	74_37	+1	known	frame_shift_del	c.4719_4720	p.K1577fs	0.189:0.652	NULL	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_dom	-	no_errors	MAST4	HGNC	ENSG00000069020				37	0	0	27	6	18.1818
MRPS27	0	genome.wustl.edu	37	5	71615931	71615932	+	RNA	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	71615931	71615932	-	A	INS	MRPS27	ENST00000523654	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.005	-	-	-	no_errors	MRPS27	HGNC	ENSG00000113048				55	0	0	30	19	38.7755
BHMT	0	genome.wustl.edu	37	5	78417152	78417152	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	78417152	78417152	C	-	DEL	BHMT	ENST00000274353	human	ensembl	74_37	+1	known	frame_shift_del	c.589	p.G199fs	0.000	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pirsf_Betaine-hCys_S-MeTrfase_BHMT,pfscan_S_MeTrfase	-	no_errors	BHMT	HGNC	ENSG00000145692				92	0	0	57	29	33.7209
MSH3	0	genome.wustl.edu	37	5	79970915	79970915	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	79970915	79970915	A	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.1141	p.K383fs	0.982	pfam_DNA_mmatch_repair_MutS_con_dom,superfamily_DNA_mmatch_repair_MutS_con_dom	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318				163	0	0	139	55	28.3505
CETN3	0	genome.wustl.edu	37	5	89701581	89701581	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	89701581	89701581	T	-	DEL	CETN3	ENST00000283122	human	ensembl	74_37	-1	known	frame_shift_del	c.189	p.A64fs	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN3	HGNC	ENSG00000153140				69	0	0	51	14	21.5385
SPATA9	0	genome.wustl.edu	37	5	94991656	94991656	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	94991656	94991656	T	-	DEL	SPATA9	ENST00000477047	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SPATA9	HGNC	ENSG00000145757				11	0	0	12	5	29.4118
RHOBTB3	0	genome.wustl.edu	37	5	95119656	95119656	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	5	95119656	95119656	A	-	DEL	RHOBTB3	ENST00000379982	human	ensembl	74_37	+1	known	frame_shift_del	c.1612	p.K539fs	1.000	NULL	pfam_BTB_POZ,pfam_Small_GTPase,superfamily_BTB/POZ_fold,superfamily_P-loop_NTPase,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	RHOBTB3	HGNC	ENSG00000164292				63	0	0	45	24	34.7826
CCNC	0	genome.wustl.edu	37	6	100006296	100006297	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	100006296	100006297	AA	-	DEL	CCNC	ENST00000482541	human	ensembl	74_37	-1	putative	frame_shift_del	c.423_422	p.F141fs	0.007:0.028	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNC	HGNC	ENSG00000112237				37	0	0	10	21	67.7419
GRIK2	0	genome.wustl.edu	37	6	102307246	102307247	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	102307246	102307247	AG	-	DEL	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	frame_shift_del	c.1402_1403	p.E469fs	1.000:1.000	pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				55	0	0	35	14	28.5714
ENSG00000271730	0	genome.wustl.edu	37	6	109319968	109319969	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	109319968	109319969	AA	-	DEL	ENSG00000271730	ENST00000605885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-787I22.3	Clone_based_vega_gene	ENSG00000271730				65	0	0	42	26	38.2353
SYCP2L	0	genome.wustl.edu	37	6	10956452	10956453	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	10956452	10956453	AA	-	DEL	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	frame_shift_del	c.2140_2141	p.K715fs	0.000:0.000	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157				46	0	0	41	16	28.0702
AK9	0	genome.wustl.edu	37	6	109818703	109818704	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	109818703	109818704	-	AT	INS	AK9	ENST00000424296	human	ensembl	74_37	-1	known	frame_shift_ins	c.5280_5279	p.C1761fs	0.996:0.996	NULL	pfam_Adenylate_kin,pfam_YHS_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	AK9	HGNC	ENSG00000155085				37	0	0	30	7	18.9189
REV3L	0	genome.wustl.edu	37	6	111709248	111709248	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	111709248	111709248	A	-	DEL	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	frame_shift_del	c.903	p.Q302fs	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				58	0	0	46	28	37.8378
MARCKS	0	genome.wustl.edu	37	6	114181210	114181210	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	114181210	114181210	A	-	DEL	MARCKS	ENST00000368635	human	ensembl	74_37	+1	known	frame_shift_del	c.454	p.K155fs	1.000	pfam_MARCKS	pfam_MARCKS,prints_MARCKS	-	no_errors	MARCKS	HGNC	ENSG00000155130				22	0	0	7	15	68.1818
ZUFSP	0	genome.wustl.edu	37	6	116967058	116967058	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	116967058	116967058	T	-	DEL	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	frame_shift_del	c.1508	p.N503fs	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975				63	0	0	38	23	37.7049
ROS1	0	genome.wustl.edu	37	6	117681119	117681120	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	117681119	117681120	-	A	INS	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	frame_shift_ins	c.3501_3500	p.L1167fs	0.982:0.828	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				64	0	0	49	19	27.9412
FAM184A	0	genome.wustl.edu	37	6	119344234	119344234	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	119344234	119344234	T	-	DEL	FAM184A	ENST00000338891	human	ensembl	74_37	-1	known	frame_shift_del	c.1026	p.K342fs	0.998	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879				96	0	0	75	27	26.4706
HIVEP1	0	genome.wustl.edu	37	6	12089463	12089463	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	12089463	12089463	A	-	DEL	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	frame_shift_del	c.87	p.E32fs	0.999	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				62	0	0	52	16	23.5294
THEMIS	0	genome.wustl.edu	37	6	128134568	128134568	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	128134568	128134568	T	-	DEL	THEMIS	ENST00000543064	human	ensembl	74_37	-1	known	frame_shift_del	c.1218	p.V407fs	0.397	NULL	NULL	-	no_errors	THEMIS	HGNC	ENSG00000172673				77	0	0	50	18	26.4706
ARHGAP18	0	genome.wustl.edu	37	6	129921947	129921947	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	129921947	129921947	T	-	DEL	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	frame_shift_del	c.1412	p.N471fs	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376				56	0	0	51	17	25
PHACTR1	0	genome.wustl.edu	37	6	13206135	13206135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	13206135	13206135	G	-	DEL	PHACTR1	ENST00000379350	human	ensembl	74_37	+1	known	frame_shift_del	c.753	p.P254fs	0.087	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR1	HGNC	ENSG00000112137				110	0	0	49	25	33.7838
HIVEP2	0	genome.wustl.edu	37	6	143094745	143094745	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	143094745	143094745	T	-	DEL	HIVEP2	ENST00000012134	human	ensembl	74_37	-1	known	frame_shift_del	c.1131	p.G378fs	1.000	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP2	HGNC	ENSG00000010818				148	0	0	110	60	35.2941
SYNE1	0	genome.wustl.edu	37	6	152776589	152776590	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	152776589	152776590	-	C	INS	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	frame_shift_ins	c.2864_2863	p.D955fs	0.889:0.888	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018				84	0	0	57	25	30.4878
ARID1B	0	genome.wustl.edu	37	6	157527817	157527817	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	157527817	157527817	C	-	DEL	ARID1B	ENST00000367148	human	ensembl	74_37	+1	known	frame_shift_del	c.5662	p.L1890fs	0.002	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618				123	0	0	62	33	34.7368
TULP4	0	genome.wustl.edu	37	6	158900957	158900957	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	158900957	158900957	C	-	DEL	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	frame_shift_del	c.1201	p.R403fs	1.000	pfam_SOCS_C,superfamily_Tumour_necrosis_fac-like_dom,smart_SOCS_C,pfscan_SOCS_C	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				75	0	0	56	22	28.2051
IGF2R	0	genome.wustl.edu	37	6	160461692	160461694	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	160461692	160461694	CCT	-	DEL	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	in_frame_del	c.1416_1418	p.L474in_frame_del	0.892:0.893:0.547	pfam_CIMR	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081				153	0	0	106	46	30.2632
QKI	0	genome.wustl.edu	37	6	163899920	163899920	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	163899920	163899920	A	-	DEL	QKI	ENST00000361752	human	ensembl	74_37	+1	known	frame_shift_del	c.394	p.K134fs	1.000	smart_KH_dom	pfam_KH_dom_type_1,smart_KH_dom	-	no_errors	QKI	HGNC	ENSG00000112531				71	0	0	33	47	58.75
TTLL2	0	genome.wustl.edu	37	6	167754366	167754367	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	167754366	167754367	-	T	INS	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	frame_shift_ins	c.978_979	p.S328fs	0.976:0.994	pfam_TTL/TTLL_fam	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440				195	0	0	137	65	32.1782
THBS2	0	genome.wustl.edu	37	6	169646212	169646213	+	RNA	DEL	AC	AC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	169646212	169646213	AC	-	DEL	THBS2	ENST00000472733	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	THBS2	HGNC	ENSG00000186340				20	0	0	14	8	36.3636
RBM24	0	genome.wustl.edu	37	6	17292449	17292451	+	RNA	DEL	AAA	AAA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	17292449	17292451	AAA	-	DEL	RBM24	ENST00000508508	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.915:0.719:0.391	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183				17	0	0	3	7	70
TCF19	0	genome.wustl.edu	37	6	31127312	31127312	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	31127312	31127312	C	-	DEL	TCF19	ENST00000376255	human	ensembl	74_37	+1	known	frame_shift_del	c.66	p.A25fs	0.998	superfamily_SMAD_FHA_domain	pfam_FHA_dom,pfam_Znf_PHD-finger,superfamily_SMAD_FHA_domain,superfamily_Znf_FYVE_PHD,smart_FHA_dom,smart_Znf_PHD,pfscan_FHA_dom	-	no_errors	TCF19	HGNC	ENSG00000137310				18	0	0	13	9	40.9091
LSM2	0	genome.wustl.edu	37	6	31765402	31765402	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	31765402	31765402	A	-	DEL	LSM2	ENST00000470083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LSM2	HGNC	ENSG00000204392				40	0	0	21	13	38.2353
RGL2	0	genome.wustl.edu	37	6	33263965	33263965	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	33263965	33263965	C	-	DEL	RGL2	ENST00000497454	human	ensembl	74_37	-1	known	frame_shift_del	c.608	p.G203fs	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441				241	1	0.413223	190	67	26.07
PRPF4B	0	genome.wustl.edu	37	6	4032686	4032687	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	4032686	4032687	-	A	INS	PRPF4B	ENST00000337659	human	ensembl	74_37	+1	known	frame_shift_ins	c.935_936	p.S314fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PRPF4B	HGNC	ENSG00000112739				87	0	0	59	26	30.5882
UNC5CL	0	genome.wustl.edu	37	6	41002639	41002639	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	41002639	41002639	G	-	DEL	UNC5CL	ENST00000244565	human	ensembl	74_37	-1	known	frame_shift_del	c.175	p.Q59fs	0.000	NULL	pfam_ZU5,pfam_Death_domain,superfamily_DEATH-like_dom,smart_ZU5,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	UNC5CL	HGNC	ENSG00000124602				125	0	0	79	30	27.5229
CUL7	0	genome.wustl.edu	37	6	43018130	43018130	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	43018130	43018130	A	-	DEL	CUL7	ENST00000535468	human	ensembl	74_37	-1	known	frame_shift_del	c.1492	p.W498fs	1.000	pfam_CPH_domain	pfam_Cullin_N,pfam_CPH_domain,pfam_APC_su10/DOC_dom,superfamily_Galactose-bd-like,superfamily_Cullin_homology,superfamily_ARM-type_fold,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL7	HGNC	ENSG00000044090				75	0	0	41	17	29.3103
SLC22A7	0	genome.wustl.edu	37	6	43271815	43271815	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	43271815	43271815	G	-	DEL	SLC22A7	ENST00000372585	human	ensembl	74_37	+1	known	frame_shift_del	c.1425	p.G477fs	0.990	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A7	HGNC	ENSG00000137204				217	0	0	138	68	33.0097
PLA2G7	0	genome.wustl.edu	37	6	46675819	46675820	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	46675819	46675820	-	A	INS	PLA2G7	ENST00000274793	human	ensembl	74_37	-1	known	frame_shift_ins	c.949_948	p.I316fs	1.000:1.000	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PLA2G7	HGNC	ENSG00000146070				63	0	0	31	26	45.614
SMAP1	0	genome.wustl.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	71508370	71508370	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.506	p.K172fs	1.000	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				12	0	0	6	3	33.3333
SMAP1	0	genome.wustl.edu	37	6	71546674	71546674	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	71546674	71546674	A	-	DEL	SMAP1	ENST00000370455	human	ensembl	74_37	+1	known	frame_shift_del	c.607	p.S205fs	0.970	NULL	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	SMAP1	HGNC	ENSG00000112305				27	0	0	23	7	23.3333
SLC17A5	0	genome.wustl.edu	37	6	74351590	74351590	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	74351590	74351590	A	-	DEL	SLC17A5	ENST00000355773	human	ensembl	74_37	-1	known	frame_shift_del	c.349	p.Y117fs	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A5	HGNC	ENSG00000119899				200	1	0.497512	166	58	25.8929
SNRNP48	0	genome.wustl.edu	37	6	7609096	7609096	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	7609096	7609096	A	-	DEL	SNRNP48	ENST00000342415	human	ensembl	74_37	+1	known	frame_shift_del	c.1010	p.I339fs	0.055	NULL	pfam_TRM13/UPF0224_CHHC_Znf_dom	-	no_errors	SNRNP48	HGNC	ENSG00000168566				30	0	0	11	13	54.1667
TTK	0	genome.wustl.edu	37	6	80751897	80751897	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	80751897	80751897	A	-	DEL	TTK	ENST00000369798	human	ensembl	74_37	+1	known	frame_shift_del	c.2552	p.R854fs	0.102	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TTK	HGNC	ENSG00000112742				74	0	0	58	16	21.6216
MDN1	0	genome.wustl.edu	37	6	90432675	90432675	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	6	90432675	90432675	T	-	DEL	MDN1	ENST00000369393	human	ensembl	74_37	-1	known	frame_shift_del	c.5966	p.K1989fs	1.000	superfamily_P-loop_NTPase,pirsf_Midasin	pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,smart_AAA+_ATPase,smart_VWF_A,pirsf_Midasin,pfscan_VWF_A	-	no_errors	MDN1	HGNC	ENSG00000112159				159	1	0.625	130	78	37.5
AP1S1	0	genome.wustl.edu	37	7	100802404	100802405	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	100802404	100802405	-	G	INS	AP1S1	ENST00000337619	human	ensembl	74_37	+1	known	frame_shift_ins	c.356_357	p.D122fs	1.000:1.000	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	pfam_AP_mu_sigma_su,superfamily_Longin-like_dom,pirsf_AP_complex_ssu	-	no_errors	AP1S1	HGNC	ENSG00000106367				35	0	0	41	6	12.766
ENSG00000239969	0	genome.wustl.edu	37	7	102021057	102021057	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	102021057	102021057	A	-	DEL	ENSG00000239969	ENST00000484974	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.079	-	-	-	no_errors	RP11-163E9.2	Clone_based_vega_gene	ENSG00000239969				60	0	0	52	20	27.7778
LRRC17	0	genome.wustl.edu	37	7	102584993	102584993	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	102584993	102584993	A	-	DEL	LRRC17	ENST00000339431	human	ensembl	74_37	+1	known	frame_shift_del	c.1265	p.K424fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	LRRC17	HGNC	ENSG00000128606				72	0	0	52	15	22.3881
C7orf50	0	genome.wustl.edu	37	7	1037311	1037311	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	1037311	1037311	G	-	DEL	C7orf50	ENST00000357429	human	ensembl	74_37	-1	known	frame_shift_del	c.535	p.L179fs	0.001	NULL	pfam_DUF2373	-	no_errors	C7orf50	HGNC	ENSG00000146540				55	0	0	26	19	42.2222
WNT16	0	genome.wustl.edu	37	7	120971879	120971879	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	120971879	120971879	G	-	DEL	WNT16	ENST00000222462	human	ensembl	74_37	+1	known	frame_shift_del	c.494	p.G167fs	1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC	ENSG00000002745				76	0	0	63	15	19.2308
PTPRZ1	0	genome.wustl.edu	37	7	121513489	121513489	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	121513489	121513489	C	-	DEL	PTPRZ1	ENST00000471837	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				16	0	0	10	7	41.1765
CEP41	0	genome.wustl.edu	37	7	130052065	130052065	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	130052065	130052065	T	-	DEL	CEP41	ENST00000223208	human	ensembl	74_37	-1	known	frame_shift_del	c.162	p.D55fs	1.000	NULL	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	CEP41	HGNC	ENSG00000106477				95	0	0	73	25	25.5102
ETV1	0	genome.wustl.edu	37	7	13975472	13975473	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	13975472	13975473	-	G	INS	ETV1	ENST00000405218	human	ensembl	74_37	-1	known	frame_shift_ins	c.415_414	p.T138fs	0.999:0.466	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV1	HGNC	ENSG00000006468				83	0	0	59	26	30.5882
GIMAP8	0	genome.wustl.edu	37	7	150164231	150164232	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	150164231	150164232	-	A	INS	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	frame_shift_ins	c.445_446	p.N151fs	0.000:0.001	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115				65	0	0	48	28	36.8421
GALNT11	0	genome.wustl.edu	37	7	151791468	151791468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	151791468	151791468	A	-	DEL	GALNT11	ENST00000320311	human	ensembl	74_37	+1	known	frame_shift_del	c.156	p.K54fs	0.783	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT11	HGNC	ENSG00000178234				164	0	0	127	40	23.9521
HOXA2	0	genome.wustl.edu	37	7	27140390	27140390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	27140390	27140390	A	-	DEL	HOXA2	ENST00000222718	human	ensembl	74_37	-1	known	frame_shift_del	c.1086	p.F362fs	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA2	HGNC	ENSG00000105996				137	0	0	109	49	31.0127
GARS	0	genome.wustl.edu	37	7	30634583	30634585	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	30634583	30634585	CTG	-	DEL	GARS	ENST00000389266	human	ensembl	74_37	+1	known	in_frame_del	c.46_48	p.L19in_frame_del	0.090:0.073:0.025	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,prints_tRNA-synt_gly,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105				34	0	0	17	3	15
ADCYAP1R1	0	genome.wustl.edu	37	7	31104447	31104448	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	31104447	31104448	-	C	INS	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	frame_shift_ins	c.52_53	p.A20fs	0.943:0.299	prints_GPCR_2_PACAP_1_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549				27	0	0	16	7	30.4348
MYO1G	0	genome.wustl.edu	37	7	45010276	45010276	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	45010276	45010276	G	-	DEL	MYO1G	ENST00000258787	human	ensembl	74_37	-1	known	frame_shift_del	c.1132	p.R378fs	0.200	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286				125	0	0	78	43	35.5372
ZDHHC4	0	genome.wustl.edu	37	7	6621849	6621849	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	6621849	6621849	T	-	DEL	ZDHHC4	ENST00000335965	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.F115fs	0.001	NULL	pfam_Znf_DHHC_palmitoyltrfase,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC4	HGNC	ENSG00000136247				202	0	0	152	51	25.1232
ELN	0	genome.wustl.edu	37	7	73480300	73480300	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	73480300	73480300	G	-	DEL	ELN	ENST00000358929	human	ensembl	74_37	+1	known	frame_shift_del	c.2263	p.G756fs	0.929	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540				123	0	0	95	39	29.1045
SEMA3E	0	genome.wustl.edu	37	7	83029431	83029431	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	83029431	83029431	T	-	DEL	SEMA3E	ENST00000307792	human	ensembl	74_37	-1	known	frame_shift_del	c.1279	p.T427fs	0.975	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3E	HGNC	ENSG00000170381				132	0	0	88	42	32.3077
ANKIB1	0	genome.wustl.edu	37	7	91936914	91936914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	91936914	91936914	A	-	DEL	ANKIB1	ENST00000265742	human	ensembl	74_37	+1	known	frame_shift_del	c.430	p.N146fs	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Znf_C6HC,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Znf_RING,smart_Znf_C6HC,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Ubiquitin-int_motif,pfscan_Znf_RING	-	no_errors	ANKIB1	HGNC	ENSG00000001629				30	0	0	25	9	26.4706
CASD1	0	genome.wustl.edu	37	7	94174999	94174999	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	94174999	94174999	A	-	DEL	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	frame_shift_del	c.1619	p.A543fs	1.000	pfam_Cas1_AcylTrans_dom	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995				34	0	0	21	11	34.375
LOC101927550	0	genome.wustl.edu	37	7	98630588	98630588	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	98630588	98630588	A	-	DEL	LOC101927550	ENST00000360902	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC004893.11	Clone_based_vega_gene	ENSG00000242687				21	0	0	8	6	42.8571
PILRB	0	genome.wustl.edu	37	7	99957129	99957131	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	7	99957129	99957131	CCT	-	DEL	PILRB	ENST00000448382	human	ensembl	74_37	+1	known	in_frame_del	c.781_783	p.P264in_frame_del	0.001:0.001:0.001	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716				38	0	0	41	17	29.3103
POLR2K	0	genome.wustl.edu	37	8	101164033	101164033	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	101164033	101164033	T	-	DEL	POLR2K	ENST00000519765	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	POLR2K	HGNC	ENSG00000147669				35	0	0	36	10	21.7391
UBR5	0	genome.wustl.edu	37	8	103289349	103289349	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	103289349	103289349	T	-	DEL	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	frame_shift_del	c.6360	p.E2121fs	0.987	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517				96	0	0	142	32	18.3908
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934				31	0	0	21	24	53.3333
DCSTAMP	0	genome.wustl.edu	37	8	105360820	105360821	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	105360820	105360821	-	T	INS	DCSTAMP	ENST00000297581	human	ensembl	74_37	+1	known	frame_shift_ins	c.40_41	p.W15fs	0.087:0.113	NULL	pfam_DC_STAMP-like,superfamily_ABC1_TM_dom	-	no_errors	DCSTAMP	HGNC	ENSG00000164935				101	0	0	89	35	28.2258
LRP12	0	genome.wustl.edu	37	8	105502801	105502801	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	105502801	105502801	T	-	DEL	LRP12	ENST00000518375	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.512	-	-	-	no_errors	LRP12	HGNC	ENSG00000147650				22	0	0	23	3	11.5385
DEPTOR	0	genome.wustl.edu	37	8	121013857	121013857	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	121013857	121013857	A	-	DEL	DEPTOR	ENST00000286234	human	ensembl	74_37	+1	known	frame_shift_del	c.698	p.K234fs	0.999	NULL	pfam_DEP_dom,superfamily_PDZ,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ	-	no_errors	DEPTOR	HGNC	ENSG00000155792				58	0	0	50	22	30.5556
ATAD2	0	genome.wustl.edu	37	8	124335279	124335279	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	124335279	124335279	T	-	DEL	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	frame_shift_del	c.4030	p.S1344fs	1.000	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				24	0	0	36	13	26.5306
FER1L6	0	genome.wustl.edu	37	8	125080031	125080031	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	125080031	125080031	A	-	DEL	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	frame_shift_del	c.3702	p.G1237fs	0.152	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814				40	0	0	58	16	21.6216
PHF20L1	0	genome.wustl.edu	37	8	133826909	133826909	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	133826909	133826909	A	-	DEL	PHF20L1	ENST00000395386	human	ensembl	74_37	+1	putative	frame_shift_del	c.958	p.N322fs	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Tudor-like_plant	-	no_errors	PHF20L1	HGNC	ENSG00000129292				84	0	0	66	27	29.0323
PTK2	0	genome.wustl.edu	37	8	141754887	141754888	+	RNA	DEL	AG	AG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	141754887	141754888	AG	-	DEL	PTK2	ENST00000518509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	PTK2	HGNC	ENSG00000169398				37	0	0	45	3	6.25
LY6H	0	genome.wustl.edu	37	8	144239836	144239836	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144239836	144239836	A	-	DEL	LY6H	ENST00000342752	human	ensembl	74_37	-1	known	frame_shift_del	c.317	p.F106fs	1.000	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LY6H	HGNC	ENSG00000176956				100	0	0	119	33	21.7105
SCRIB	0	genome.wustl.edu	37	8	144890805	144890805	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	144890805	144890805	C	-	DEL	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	frame_shift_del	c.2089	p.A697fs	0.342	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900				69	0	0	72	18	20
RHOBTB2	0	genome.wustl.edu	37	8	22864673	22864673	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	22864673	22864673	G	-	DEL	RHOBTB2	ENST00000251822	human	ensembl	74_37	+1	known	frame_shift_del	c.915	p.G307fs	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_BTB_POZ,pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,superfamily_BTB/POZ_fold,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_BTB/POZ-like,pfscan_BTB/POZ-like,prints_Small_GTPase	-	no_errors	RHOBTB2	HGNC	ENSG00000008853				117	0	0	95	30	24
PTK2B	0	genome.wustl.edu	37	8	27289871	27289871	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	27289871	27289871	C	-	DEL	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	frame_shift_del	c.980	p.Q329fs	1.000	pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				43	0	0	40	16	28.5714
ESCO2	0	genome.wustl.edu	37	8	27634456	27634456	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	27634456	27634456	T	-	DEL	ESCO2	ENST00000305188	human	ensembl	74_37	+1	known	frame_shift_del	c.631	p.F212fs	1.000	NULL	NULL	-	no_errors	ESCO2	HGNC	ENSG00000171320				51	0	0	64	18	21.9512
FZD3	0	genome.wustl.edu	37	8	28409242	28409242	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	28409242	28409242	T	-	DEL	FZD3	ENST00000240093	human	ensembl	74_37	+1	known	frame_shift_del	c.1527	p.H512fs	1.000	pfam_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD3	HGNC	ENSG00000104290				82	0	0	102	30	22.7273
WRN	0	genome.wustl.edu	37	8	31001132	31001132	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	31001132	31001132	A	-	DEL	WRN	ENST00000298139	human	ensembl	74_37	+1	known	frame_shift_del	c.3376	p.S1128fs	0.872	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392				54	0	0	85	15	15
MAK16	0	genome.wustl.edu	37	8	33354754	33354755	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	33354754	33354755	-	G	INS	MAK16	ENST00000360128	human	ensembl	74_37	+1	known	frame_shift_ins	c.644_645	p.K217fs	0.000:0.000	pfam_Mak16,pirsf_Mak16	pfam_Mak16,pirsf_Mak16	-	no_errors	MAK16	HGNC	ENSG00000198042				124	0	0	156	39	20
UNC5D	0	genome.wustl.edu	37	8	35583896	35583897	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	35583896	35583897	-	C	INS	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	frame_shift_ins	c.1530_1531	p.H511fs	0.999:1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687				89	0	0	83	28	25.2252
IDO1	0	genome.wustl.edu	37	8	39782815	39782815	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	39782815	39782815	G	-	DEL	IDO1	ENST00000518237	human	ensembl	74_37	+1	known	frame_shift_del	c.781	p.G262fs	0.998	pfam_Indolamine_dOase	pfam_Indolamine_dOase	-	no_errors	IDO1	HGNC	ENSG00000131203				32	0	0	31	9	22.5
RB1CC1	0	genome.wustl.edu	37	8	53568735	53568735	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	53568735	53568735	T	-	DEL	RB1CC1	ENST00000025008	human	ensembl	74_37	-1	known	frame_shift_del	c.3654	p.K1218fs	0.000	NULL	pfam_Autophagy-rel_p11	-	no_errors	RB1CC1	HGNC	ENSG00000023287				171	0	0	208	60	22.3881
ATP6V1H	0	genome.wustl.edu	37	8	54628547	54628547	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	54628547	54628547	G	-	DEL	ATP6V1H	ENST00000359530	human	ensembl	74_37	-1	known	frame_shift_del	c.1429	p.Q477fs	0.992	NULL	pfam_ATPase_V1-cplx_hsu,pfam_ATPase_V1-cplx_hsu_C,superfamily_ARM-type_fold,pirsf_ATPase_V1-cplx_hsu	-	no_errors	ATP6V1H	HGNC	ENSG00000047249				24	0	0	25	7	21.875
ANGPT2	0	genome.wustl.edu	37	8	6378798	6378798	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	6378798	6378798	T	-	DEL	ANGPT2	ENST00000325203	human	ensembl	74_37	-1	known	frame_shift_del	c.700	p.I234fs	0.004	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT2	HGNC	ENSG00000091879				76	0	0	105	26	19.8473
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218				73	0	0	67	26	27.957
PREX2	0	genome.wustl.edu	37	8	68992721	68992721	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	68992721	68992721	T	-	DEL	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	frame_shift_del	c.1686	p.S565fs	0.015	smart_DEP_dom,pfscan_DEP_dom	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889				40	0	0	69	18	20.6897
KCNB2	0	genome.wustl.edu	37	8	73480397	73480397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	73480397	73480397	A	-	DEL	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	frame_shift_del	c.428	p.E146fs	1.000	prints_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674				144	1	0.689655	139	41	22.7778
ZFHX4	0	genome.wustl.edu	37	8	77617336	77617337	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	77617336	77617337	-	A	INS	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	frame_shift_ins	c.1013_1014	p.S341fs	1.000:1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656				100	0	0	103	25	19.5312
ENSG00000253334	0	genome.wustl.edu	37	8	82727641	82727641	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	82727641	82727641	A	-	DEL	ENSG00000253334	ENST00000524337	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.496	-	-	-	no_errors	RP13-923O23.6	Clone_based_vega_gene	ENSG00000253334				33	0	0	25	8	24.2424
SLC26A7	0	genome.wustl.edu	37	8	92352747	92352747	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	92352747	92352747	A	-	DEL	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	frame_shift_del	c.994	p.K333fs	1.000	pfam_Sulph_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				83	0	0	77	20	20.6186
SLC26A7	0	genome.wustl.edu	37	8	92406218	92406218	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	8	92406218	92406218	T	-	DEL	SLC26A7	ENST00000309536	human	ensembl	74_37	+1	known	frame_shift_del	c.1886	p.F631fs	0.996	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A7	HGNC	ENSG00000147606				92	0	0	109	20	15.5039
TEX10	0	genome.wustl.edu	37	9	103066177	103066177	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	103066177	103066177	C	-	DEL	TEX10	ENST00000477648	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TEX10	HGNC	ENSG00000136891				8	0	0	9	9	50
ABCA1	0	genome.wustl.edu	37	9	107548581	107548582	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	107548581	107548582	-	T	INS	ABCA1	ENST00000374736	human	ensembl	74_37	-1	known	frame_shift_ins	c.6399_6398	p.N2133fs	1.000:1.000	pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029				94	0	0	63	27	30
UGCG	0	genome.wustl.edu	37	9	114695180	114695180	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	114695180	114695180	T	-	DEL	UGCG	ENST00000374279	human	ensembl	74_37	+1	known	frame_shift_del	c.1088	p.L365fs	1.000	NULL	pfam_Glyco_trans_2	-	no_errors	UGCG	HGNC	ENSG00000148154				95	0	0	74	34	31.4815
AKNA	0	genome.wustl.edu	37	9	117121999	117122000	+	In_Frame_Ins	INS	-	-	TCC			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	117121999	117122000	-	TCC	INS	AKNA	ENST00000307564	human	ensembl	74_37	-1	known	in_frame_ins	c.2367_2366	p.791in_frame_insE	0.000:0.000	NULL	pfam_TF_AT-hook	-	no_errors	AKNA	HGNC	ENSG00000106948				63	0	0	45	6	11.7647
CNTRL	0	genome.wustl.edu	37	9	123914650	123914650	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	123914650	123914650	T	-	DEL	CNTRL	ENST00000373845	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	CNTRL	HGNC	ENSG00000119397				14	0	0	9	6	40
CNTRL	0	genome.wustl.edu	37	9	123924525	123924525	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	123924525	123924525	A	-	DEL	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	frame_shift_del	c.5399	p.K1802fs	1.000	superfamily_tRNA-bd_arm	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397				60	0	0	49	5	9.25926
RAB14	0	genome.wustl.edu	37	9	123954450	123954450	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	123954450	123954450	T	-	DEL	RAB14	ENST00000373840	human	ensembl	74_37	-1	known	frame_shift_del	c.105	p.K35fs	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396				99	0	0	72	33	31.4286
RABGAP1	0	genome.wustl.edu	37	9	125861042	125861042	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	125861042	125861042	A	-	DEL	RABGAP1	ENST00000373647	human	ensembl	74_37	+1	known	frame_shift_del	c.2782	p.N930fs	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454				92	0	0	47	19	28.7879
SCAI	0	genome.wustl.edu	37	9	127765857	127765857	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	127765857	127765857	A	-	DEL	SCAI	ENST00000487795	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	SCAI	HGNC	ENSG00000173611				58	0	0	48	15	23.8095
FAM129B	0	genome.wustl.edu	37	9	130271374	130271374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	130271374	130271374	G	-	DEL	FAM129B	ENST00000373312	human	ensembl	74_37	-1	known	frame_shift_del	c.1198	p.L400fs	1.000	NULL	pfscan_Pleckstrin_homology	-	no_errors	FAM129B	HGNC	ENSG00000136830				45	0	0	24	8	25
PKN3	0	genome.wustl.edu	37	9	131482673	131482675	+	In_Frame_Del	DEL	ACC	ACC	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	ACC	ACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	131482673	131482675	ACC	-	DEL	PKN3	ENST00000291906	human	ensembl	74_37	+1	known	in_frame_del	c.2458_2460	p.T821in_frame_del	0.777:0.677:0.663	superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN3	HGNC	ENSG00000160447				264	0	0	156	41	20.8122
SETX	0	genome.wustl.edu	37	9	135158548	135158549	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135158548	135158549	AA	-	DEL	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.003	-	-	-	no_errors	SETX	HGNC	ENSG00000107290				8	0	0	12	10	45.4545
TSC1	0	genome.wustl.edu	37	9	135786444	135786446	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135786444	135786446	AGG	-	DEL	TSC1	ENST00000298552	human	ensembl	74_37	-1	known	in_frame_del	c.1086_1084	p.P362in_frame_del	1.000:1.000:1.000	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699				112	0	0	60	20	25
GTF3C5	0	genome.wustl.edu	37	9	135929331	135929332	+	Splice_Site	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	135929331	135929332	-	A	INS	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	splice_site_ins	c.988+2_988+1	e6+2	1.000:0.997	-	-	-	no_errors	GTF3C5	HGNC	ENSG00000148308				61	0	0	22	17	43.5897
WDR5	0	genome.wustl.edu	37	9	137019597	137019598	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	137019597	137019598	-	C	INS	WDR5	ENST00000358625	human	ensembl	74_37	+1	known	frame_shift_ins	c.641_642	p.V217fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_TIF_beta_prop-like,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR5	HGNC	ENSG00000196363				392	0	0	273	80	22.6629
LCN1	0	genome.wustl.edu	37	9	138415728	138415728	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	138415728	138415728	G	-	DEL	LCN1	ENST00000263598	human	ensembl	74_37	+1	known	frame_shift_del	c.295	p.G100fs	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	LCN1	HGNC	ENSG00000160349				53	0	0	29	12	29.2683
ABCA2	0	genome.wustl.edu	37	9	139918658	139918658	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	139918658	139918658	G	-	DEL	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	frame_shift_del	c.97	p.L33fs	0.632	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331				29	0	0	23	4	14.8148
MIR602	0	genome.wustl.edu	37	9	140732961	140732961	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	140732961	140732961	C	-	DEL	MIR602	ENST00000384960	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.093	-	-	-	no_errors	MIR602	HGNC	ENSG00000207693				83	0	0	65	32	32.9897
TAF1L	0	genome.wustl.edu	37	9	32633025	32633025	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	32633025	32633025	T	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.2553	p.A852fs	1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				166	0	0	134	54	28.7234
KIF24	0	genome.wustl.edu	37	9	34257623	34257623	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	34257623	34257623	T	-	DEL	KIF24	ENST00000379166	human	ensembl	74_37	-1	known	frame_shift_del	c.1982	p.K661fs	0.000	NULL	pfam_Kinesin_motor_dom,pfam_SAM_type1,superfamily_P-loop_NTPase,superfamily_SAM/pointed,smart_Kinesin_motor_dom,pfscan_SAM,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF24	HGNC	ENSG00000186638				84	0	0	33	39	54.1667
FAM219A	0	genome.wustl.edu	37	9	34401682	34401684	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	34401682	34401684	GGA	-	DEL	FAM219A	ENST00000445726	human	ensembl	74_37	-1	known	in_frame_del	c.381_379	p.S127in_frame_del	0.992:1.000:1.000	NULL	NULL	-	no_errors	FAM219A	HGNC	ENSG00000164970				18	0	0	24	4	14.2857
ARID3C	0	genome.wustl.edu	37	9	34625737	34625738	+	Splice_Site	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	34625737	34625738	-	C	INS	ARID3C	ENST00000378909	human	ensembl	74_37	-1	known	splice_site_ins	c.391+1_391+1	e2+1	1.000:1.000	-	-	-	no_errors	ARID3C	HGNC	ENSG00000205143				81	0	0	64	28	30.4348
FAM214B	0	genome.wustl.edu	37	9	35107840	35107840	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	35107840	35107840	G	-	DEL	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	frame_shift_del	c.432	p.C145fs	0.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238				100	0	0	60	29	32.5843
SPATA31A6	0	genome.wustl.edu	37	9	43626885	43626885	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	43626885	43626885	T	-	DEL	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	frame_shift_del	c.1802	p.K601fs	0.002	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775				150	0	0	119	17	12.5
PLGRKT	0	genome.wustl.edu	37	9	5361173	5361173	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	5361173	5361173	T	-	DEL	PLGRKT	ENST00000223864	human	ensembl	74_37	-1	known	frame_shift_del	c.227	p.K76fs	1.000	pfam_DUF2368	pfam_DUF2368	-	no_errors	PLGRKT	HGNC	ENSG00000107020				84	0	0	35	18	33.9623
TRPM6	0	genome.wustl.edu	37	9	77377518	77377518	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	77377518	77377518	A	-	DEL	TRPM6	ENST00000451710	human	ensembl	74_37	-1	known	frame_shift_del	c.4069	p.S1357fs	0.005	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM6	HGNC	ENSG00000119121				154	0	0	136	60	30.6122
DAPK1	0	genome.wustl.edu	37	9	90321802	90321802	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	90321802	90321802	G	-	DEL	DAPK1	ENST00000469640	human	ensembl	74_37	+1	known	frame_shift_del	c.3891	p.Y1300fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ankyrin_rpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Death_domain,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	DAPK1	HGNC	ENSG00000196730				78	0	0	42	19	31.1475
IARS	0	genome.wustl.edu	37	9	95003101	95003101	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	95003101	95003101	A	-	DEL	IARS	ENST00000473915	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	IARS	HGNC	ENSG00000196305				15	0	0	9	11	55
FGD3	0	genome.wustl.edu	37	9	95738954	95738954	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	95738954	95738954	C	-	DEL	FGD3	ENST00000337352	human	ensembl	74_37	+1	known	frame_shift_del	c.416	p.Q141fs	0.000	superfamily_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD3	HGNC	ENSG00000127084				29	0	0	17	10	37.037
PHF2	0	genome.wustl.edu	37	9	96422612	96422612	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	9	96422612	96422612	A	-	DEL	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	frame_shift_del	c.1468	p.K492fs	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				30	0	0	16	5	23.8095
BHLHB9	0	genome.wustl.edu	37	X	102003967	102003967	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	102003967	102003967	A	-	DEL	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	frame_shift_del	c.44	p.K17fs	0.000	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908				108	1	0.917431	65	34	34.3434
FRMPD3	0	genome.wustl.edu	37	X	106845186	106845186	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	106845186	106845186	G	-	DEL	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	frame_shift_del	c.4016	p.G1341fs	0.985	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234				50	0	0	21	16	43.2432
TEX13B	0	genome.wustl.edu	37	X	107224317	107224317	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	107224317	107224317	C	-	DEL	TEX13B	ENST00000302917	human	ensembl	74_37	-1	known	frame_shift_del	c.932	p.G311fs	0.000	NULL	NULL	-	no_errors	TEX13B	HGNC	ENSG00000170925				119	0	0	108	52	32.5
ATG4A	0	genome.wustl.edu	37	X	107395166	107395166	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	107395166	107395166	A	-	DEL	ATG4A	ENST00000474825	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG4A	HGNC	ENSG00000101844				33	0	0	28	4	12.5
ALG13	0	genome.wustl.edu	37	X	110970903	110970904	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	110970903	110970904	-	C	INS	ALG13	ENST00000251943	human	ensembl	74_37	+1	known	frame_shift_ins	c.1840_1841	p.G616fs	0.410:0.091	NULL	pfam_OTU,pfscan_OTU,pfscan_Tudor	-	no_errors	ALG13	HGNC	ENSG00000101901				40	0	0	33	15	31.25
SLC6A14	0	genome.wustl.edu	37	X	115582694	115582694	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	115582694	115582694	A	-	DEL	SLC6A14	ENST00000371900	human	ensembl	74_37	+1	known	frame_shift_del	c.1018	p.N341fs	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A14	HGNC	ENSG00000087916				170	0	0	114	60	34.4828
PGRMC1	0	genome.wustl.edu	37	X	118370513	118370513	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	118370513	118370513	C	-	DEL	PGRMC1	ENST00000217971	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.P64fs	1.000	superfamily_Cyt_B5-like_heme/steroid-bd	pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd	-	no_errors	PGRMC1	HGNC	ENSG00000101856				38	0	0	50	14	21.875
CUL4B	0	genome.wustl.edu	37	X	119680444	119680445	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	119680444	119680445	-	A	INS	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	frame_shift_ins	c.858_857	p.L286fs	0.999:1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290				44	0	0	42	10	19.2308
STAG2	0	genome.wustl.edu	37	X	123176474	123176475	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	123176474	123176475	-	G	INS	STAG2	ENST00000218089	human	ensembl	74_37	+1	known	frame_shift_ins	c.441_442	p.M147fs	1.000:1.000	NULL	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG2	HGNC	ENSG00000101972				50	0	0	51	26	33.7662
BCORL1	0	genome.wustl.edu	37	X	129190011	129190011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	129190011	129190011	C	-	DEL	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	frame_shift_del	c.5258	p.P1755fs	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185				94	0	0	60	36	37.5
MAP7D3	0	genome.wustl.edu	37	X	135314194	135314194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	135314194	135314194	G	-	DEL	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	frame_shift_del	c.868	p.Q290fs	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680				338	1	0.294985	121	180	59.8007
ASB11	0	genome.wustl.edu	37	X	15333633	15333633	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	15333633	15333633	A	-	DEL	ASB11	ENST00000480796	human	ensembl	74_37	-1	known	frame_shift_del	c.95	p.L32fs	1.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB11	HGNC	ENSG00000165192				95	0	0	75	47	38.5246
ACE2	0	genome.wustl.edu	37	X	15619088	15619090	+	RNA	DEL	CCT	CCT	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	15619088	15619090	CCT	-	DEL	ACE2	ENST00000484756	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.080:0.080	-	-	-	no_errors	ACE2	HGNC	ENSG00000130234				25	0	0	19	8	29.6296
TXLNG	0	genome.wustl.edu	37	X	16850848	16850849	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	16850848	16850849	-	AG	INS	TXLNG	ENST00000380122	human	ensembl	74_37	+1	known	frame_shift_ins	c.967_968	p.R327fs	1.000:1.000	pfam_Taxilin_fam	pfam_Taxilin_fam	-	no_errors	TXLNG	HGNC	ENSG00000086712				77	0	0	55	24	30.3797
RAI2	0	genome.wustl.edu	37	X	17818678	17818678	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	17818678	17818678	C	-	DEL	RAI2	ENST00000331511	human	ensembl	74_37	-1	known	frame_shift_del	c.1453	p.E485fs	1.000	NULL	NULL	-	no_errors	RAI2	HGNC	ENSG00000131831				502	1	0.198807	293	148	33.5601
DMD	0	genome.wustl.edu	37	X	33229458	33229458	+	RNA	DEL	A	A	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	33229458	33229458	A	-	DEL	DMD	ENST00000463609	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	DMD	HGNC	ENSG00000198947				28	0	0	23	7	23.3333
GPKOW	0	genome.wustl.edu	37	X	48972303	48972304	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	48972303	48972304	-	C	INS	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	frame_shift_ins	c.1082_1081	p.D361fs	1.000:1.000	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394				68	0	0	29	19	39.5833
AKAP4	0	genome.wustl.edu	37	X	49955569	49955569	+	RNA	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	49955569	49955569	G	-	DEL	AKAP4	ENST00000481402	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.755	-	-	-	no_errors	AKAP4	HGNC	ENSG00000147081				56	0	0	45	15	25
DGKK	0	genome.wustl.edu	37	X	50111889	50111890	+	RNA	INS	-	-	T			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	50111889	50111890	-	T	INS	DGKK	ENST00000376025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.918:0.486	-	-	-	no_errors	DGKK	HGNC	ENSG00000204466				24	0	0	11	8	42.1053
FGD1	0	genome.wustl.edu	37	X	54472561	54472562	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	54472561	54472562	-	G	INS	FGD1	ENST00000375135	human	ensembl	74_37	-1	known	frame_shift_ins	c.2867_2866	p.Q956fs	0.925:0.938	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD1	HGNC	ENSG00000102302				36	0	0	32	9	21.9512
ARHGEF9	0	genome.wustl.edu	37	X	62974289	62974289	+	RNA	DEL	T	T	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	62974289	62974289	T	-	DEL	ARHGEF9	ENST00000495564	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ARHGEF9	HGNC	ENSG00000131089				28	0	0	15	11	42.3077
HMGN5	0	genome.wustl.edu	37	X	80377176	80377177	+	RNA	DEL	AA	AA	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	80377176	80377177	AA	-	DEL	HMGN5	ENST00000491275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HMGN5	HGNC	ENSG00000198157				8	0	0	6	2	25
DACH2	0	genome.wustl.edu	37	X	85403681	85403681	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	X	85403681	85403681	G	-	DEL	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	frame_shift_del	c.57	p.G21fs	0.001	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733				26	0	0	15	3	16.6667
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-BR-A4QL-01A-31D-A25D-08	TCGA-BR-A4QL-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e4185ac3-7bc5-4881-a6fc-c72a990ce069	99b2d1f8-974a-4bcf-ad2d-84d93081945a	Y	10037863	10037863	C	-	DEL	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				28	0	0	23	5	17.8571
