Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
GPR61	0	genome.wustl.edu	37	1	110086752	110086752	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	110086752	110086752	C	A	SNP	GPR61	ENST00000404129	human	ensembl	74_37	+1	known	missense	c.1108	p.L370M	1.000	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	GPR61	HGNC	ENSG00000156097				37	0	0	19	5	20.8333
ACAP3	0	genome.wustl.edu	37	1	1233424	1233424	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	1233424	1233424	T	C	SNP	ACAP3	ENST00000353662	human	ensembl	74_37	-1	known	missense	c.859	p.R287G	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP3	HGNC	ENSG00000131584				14	0	0	12	2	14.2857
PRAMEF1	0	genome.wustl.edu	37	1	12854440	12854440	+	Silent	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	12854440	12854440	A	C	SNP	PRAMEF1	ENST00000332296	human	ensembl	74_37	+1	known	silent	c.664	p.R222	0.005	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721				231	0	0	179	17	8.67347
HRNR	0	genome.wustl.edu	37	1	152187276	152187276	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	152187276	152187276	C	T	SNP	HRNR	ENST00000368801	human	ensembl	74_37	-1	known	missense	c.6829	p.G2277S	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom	-	no_errors	HRNR	HGNC	ENSG00000197915				42	0	0	25	3	10.7143
FLG	0	genome.wustl.edu	37	1	152284143	152284143	+	Silent	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	152284143	152284143	A	G	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.3219	p.D1073	0.000	pfam_Filaggrin,prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				376	0	0	233	75	24.3506
FLG2	0	genome.wustl.edu	37	1	152324606	152324606	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	152324606	152324606	T	G	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.5656	p.S1886R	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520				132	0	0	91	27	22.8814
ZNF281	0	genome.wustl.edu	37	1	200378016	200378016	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	200378016	200378016	G	A	SNP	ZNF281	ENST00000294740	human	ensembl	74_37	-1	known	missense	c.818	p.S273F	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702				38	0	0	21	5	19.2308
SYT14	0	genome.wustl.edu	37	1	210334256	210334256	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	210334256	210334256	A	G	SNP	SYT14	ENST00000422431	human	ensembl	74_37	+1	known	missense	c.1729	p.R577G	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYT14	HGNC	ENSG00000143469				67	0	0	38	9	19.1489
ESRRG	0	genome.wustl.edu	37	1	216850654	216850654	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	216850654	216850654	A	C	SNP	ESRRG	ENST00000408911	human	ensembl	74_37	-1	known	missense	c.236	p.L79R	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoic_acid_rcpt	-	no_errors	ESRRG	HGNC	ENSG00000196482				44	0	0	42	4	8.69565
WNT3A	0	genome.wustl.edu	37	1	228246882	228246882	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	228246882	228246882	C	T	SNP	WNT3A	ENST00000366753	human	ensembl	74_37	+1	known	missense	c.775	p.R259C	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt3	-	no_errors	WNT3A	HGNC	ENSG00000154342				27	0	0	13	5	27.7778
HEATR1	0	genome.wustl.edu	37	1	236723047	236723047	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	236723047	236723047	C	T	SNP	HEATR1	ENST00000366582	human	ensembl	74_37	-1	known	silent	c.4737	p.A1579	0.021	superfamily_ARM-type_fold	pfam_BP28_C_dom,pfam_U3snoRNP10,superfamily_ARM-type_fold	-	no_errors	HEATR1	HGNC	ENSG00000119285				56	0	0	27	12	30.7692
GRHL3	0	genome.wustl.edu	37	1	24669504	24669504	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	24669504	24669504	C	T	SNP	GRHL3	ENST00000350501	human	ensembl	74_37	+1	known	missense	c.1408	p.R470C	1.000	NULL	pfam_CP2,superfamily_C2_dom	-	no_errors	GRHL3	HGNC	ENSG00000158055				100	0	0	67	18	21.1765
OR2G2	0	genome.wustl.edu	37	1	247752194	247752194	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	247752194	247752194	A	G	SNP	OR2G2	ENST00000320065	human	ensembl	74_37	+1	known	missense	c.533	p.D178G	0.025	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G2	HGNC	ENSG00000177489				85	0	0	46	19	29.2308
CSMD2	0	genome.wustl.edu	37	1	34042979	34042979	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	34042979	34042979	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.7493	p.R2498H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				60	0	0	30	7	18.9189
LRRC8B	0	genome.wustl.edu	37	1	90058454	90058454	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	90058454	90058454	T	C	SNP	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	missense	c.2264	p.L755P	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147				44	0	0	25	9	26.4706
LRRC8C	0	genome.wustl.edu	37	1	90180288	90180288	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	90180288	90180288	G	A	SNP	LRRC8C	ENST00000370454	human	ensembl	74_37	+1	known	missense	c.2159	p.S720N	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8C	HGNC	ENSG00000171488				31	0	0	16	4	20
CA6	0	genome.wustl.edu	37	1	9030997	9030997	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	9030997	9030997	G	A	SNP	CA6	ENST00000377443	human	ensembl	74_37	+1	known	silent	c.801	p.Q267	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA6	HGNC	ENSG00000131686				70	0	0	47	11	18.9655
SEC23IP	0	genome.wustl.edu	37	10	121658153	121658153	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	121658153	121658153	C	T	SNP	SEC23IP	ENST00000369075	human	ensembl	74_37	+1	known	silent	c.378	p.S126	1.000	NULL	pfam_DDHD,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_DDHD	-	no_errors	SEC23IP	HGNC	ENSG00000107651				74	0	0	52	20	27.7778
MCM10	0	genome.wustl.edu	37	10	13234491	13234491	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	13234491	13234491	G	A	SNP	MCM10	ENST00000484800	human	ensembl	74_37	+1	known	silent	c.1671	p.S557	0.020	pfam_Rep_factor_Mcm10	pfam_Rep_factor_Mcm10,pfam_Znf_Mcm10/DnaG	-	no_errors	MCM10	HGNC	ENSG00000065328				42	0	0	23	10	30.303
FRG2B	0	genome.wustl.edu	37	10	135438753	135438753	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	135438753	135438753	G	A	SNP	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	silent	c.687	p.T229	0.707	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899				11	0	0	6	3	33.3333
VIM	0	genome.wustl.edu	37	10	17276765	17276765	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	17276765	17276765	A	G	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	missense	c.956	p.Y319C	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				39	0	0	21	7	25
CACNB2	0	genome.wustl.edu	37	10	18789768	18789768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	18789768	18789768	C	T	SNP	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	nonsense	c.484	p.R162*	0.996	superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995				26	0	0	24	6	20
KAT6B	0	genome.wustl.edu	37	10	76789439	76789439	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	76789439	76789439	C	T	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	silent	c.4857	p.V1619	0.997	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650				53	0	0	36	15	29.4118
ZMIZ1	0	genome.wustl.edu	37	10	81052021	81052021	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	81052021	81052021	G	A	SNP	ZMIZ1	ENST00000334512	human	ensembl	74_37	+1	known	missense	c.865	p.A289T	1.000	NULL	pfam_Znf_MIZ,pfscan_Znf_MIZ	-	no_errors	ZMIZ1	HGNC	ENSG00000108175				97	0	0	63	17	21.25
RRP12	0	genome.wustl.edu	37	10	99126349	99126349	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	10	99126349	99126349	T	C	SNP	RRP12	ENST00000370992	human	ensembl	74_37	-1	known	missense	c.3245	p.D1082G	0.987	NULL	pfam_Uncharacterised_NUC173,superfamily_ARM-type_fold	-	no_errors	RRP12	HGNC	ENSG00000052749				87	0	0	59	15	20.2703
VSIG2	0	genome.wustl.edu	37	11	124620670	124620670	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	124620670	124620670	C	T	SNP	VSIG2	ENST00000326621	human	ensembl	74_37	-1	known	missense	c.367	p.V123I	0.686	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	VSIG2	HGNC	ENSG00000019102				33	0	0	22	5	18.5185
MUC5B	0	genome.wustl.edu	37	11	1263878	1263878	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	1263878	1263878	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.5777	p.T1926M	0.016	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983				149	0	0	93	32	25.6
KCNA4	0	genome.wustl.edu	37	11	30032974	30032974	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	30032974	30032974	T	C	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.1252	p.T418A	1.000	pfam_Ion_trans_dom,prints_K_chnl	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255				46	0	0	26	10	27.7778
MRGPRE	0	genome.wustl.edu	37	11	3249928	3249928	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	3249928	3249928	G	A	SNP	MRGPRE	ENST00000389832	human	ensembl	74_37	-1	known	silent	c.102	p.L34	0.029	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRE	HGNC	ENSG00000184350				58	0	0	37	10	21.2766
ACCSL	0	genome.wustl.edu	37	11	44069816	44069816	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	44069816	44069816	G	A	SNP	ACCSL	ENST00000378832	human	ensembl	74_37	+1	known	missense	c.230	p.R77Q	0.005	NULL	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	ACCSL	HGNC	ENSG00000205126				103	0	0	54	22	28.9474
OR4A47	0	genome.wustl.edu	37	11	48510618	48510618	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	48510618	48510618	T	G	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	missense	c.274	p.F92V	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388				65	0	0	29	7	19.4444
UBQLN3	0	genome.wustl.edu	37	11	5528945	5528945	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	5528945	5528945	T	G	SNP	UBQLN3	ENST00000311659	human	ensembl	74_37	-1	known	missense	c.1844	p.H615P	0.998	superfamily_UBA-like,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN3	HGNC	ENSG00000175520				53	0	0	27	11	28.9474
OR4D6	0	genome.wustl.edu	37	11	59225150	59225150	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	59225150	59225150	G	A	SNP	OR4D6	ENST00000300127	human	ensembl	74_37	+1	known	silent	c.717	p.T239	0.998	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884				53	0	0	32	20	38.4615
GNPTAB	0	genome.wustl.edu	37	12	102147160	102147160	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	102147160	102147160	G	T	SNP	GNPTAB	ENST00000299314	human	ensembl	74_37	-1	known	missense	c.3592	p.L1198M	1.000	NULL	pfam_DMAP1-bd,pfam_Notch_dom,pfam_DUF3184,superfamily_Notch_dom,smart_Notch_dom,pfscan_EF_hand_dom,pfscan_Notch_dom	-	no_errors	GNPTAB	HGNC	ENSG00000111670				27	0	0	20	3	13.0435
BTBD11	0	genome.wustl.edu	37	12	107712922	107712922	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	107712922	107712922	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.205	p.V69I	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				9	0	0	7	4	36.3636
WSCD2	0	genome.wustl.edu	37	12	108589694	108589694	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	108589694	108589694	G	A	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	missense	c.85	p.A29T	1.000	NULL	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				102	0	0	54	17	23.9437
FICD	0	genome.wustl.edu	37	12	108912824	108912824	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	108912824	108912824	G	A	SNP	FICD	ENST00000552695	human	ensembl	74_37	+1	known	missense	c.949	p.G317R	1.000	pfam_Fido,superfamily_Fido	pfam_Fido,superfamily_Fido,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	FICD	HGNC	ENSG00000198855				35	0	0	20	5	20
WSB2	0	genome.wustl.edu	37	12	118490136	118490136	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	118490136	118490136	G	T	SNP	WSB2	ENST00000315436	human	ensembl	74_37	-1	known	missense	c.161	p.P54H	1.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,pfam_SOCS_C,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WSB2	HGNC	ENSG00000176871				50	0	0	29	9	23.6842
METTL20	0	genome.wustl.edu	37	12	31820774	31820774	+	Silent	SNP	A	A	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	31820774	31820774	A	T	SNP	METTL20	ENST00000357721	human	ensembl	74_37	+1	known	silent	c.639	p.R213	0.024	NULL	pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL20	HGNC	ENSG00000139160				31	0	0	13	5	27.7778
COL2A1	0	genome.wustl.edu	37	12	48371127	48371127	+	Silent	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	48371127	48371127	G	T	SNP	COL2A1	ENST00000380518	human	ensembl	74_37	-1	known	silent	c.3249	p.G1083	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL2A1	HGNC	ENSG00000139219				43	0	0	41	12	22.6415
NCKAP5L	0	genome.wustl.edu	37	12	50185782	50185782	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	50185782	50185782	G	A	SNP	NCKAP5L	ENST00000335999	human	ensembl	74_37	-1	known	missense	c.3845	p.T1282M	0.000	NULL	NULL	-	no_errors	NCKAP5L	HGNC	ENSG00000167566				19	0	0	17	4	19.0476
ERBB3	0	genome.wustl.edu	37	12	56482341	56482341	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	56482341	56482341	G	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.889	p.D297Y	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				120	0	0	93	26	21.8487
CCER1	0	genome.wustl.edu	37	12	91348279	91348279	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	91348279	91348279	C	T	SNP	CCER1	ENST00000358859	human	ensembl	74_37	-1	known	missense	c.241	p.V81M	0.000	NULL	NULL	-	no_errors	CCER1	HGNC	ENSG00000197651				39	0	0	21	7	25
CLEC2D	0	genome.wustl.edu	37	12	9840550	9840550	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	12	9840550	9840550	C	T	SNP	CLEC2D	ENST00000261340	human	ensembl	74_37	+1	known	silent	c.225	p.C75	0.856	pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC2D	HGNC	ENSG00000069493				40	0	0	29	10	25.641
LPAR6	0	genome.wustl.edu	37	13	48986434	48986434	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	13	48986434	48986434	G	C	SNP	LPAR6	ENST00000345941	human	ensembl	74_37	-1	known	missense	c.126	p.F42L	0.994	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	LPAR6	HGNC	ENSG00000139679				21	0	0	31	6	16.2162
GPC5	0	genome.wustl.edu	37	13	92345752	92345752	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	13	92345752	92345752	G	A	SNP	GPC5	ENST00000377067	human	ensembl	74_37	+1	known	missense	c.637	p.G213R	0.906	pfam_Glypican	pfam_Glypican	-	no_errors	GPC5	HGNC	ENSG00000179399				27	0	0	24	6	20
REM2	0	genome.wustl.edu	37	14	23354488	23354488	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	14	23354488	23354488	G	T	SNP	REM2	ENST00000267396	human	ensembl	74_37	+1	known	missense	c.459	p.E153D	0.937	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad	pfam_Small_GTPase,pfam_MIRO-like,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,pirsf_Small_GTPase_GEM/REM/Rad,prints_Small_GTPase	-	no_errors	REM2	HGNC	ENSG00000139890				54	0	0	30	2	6.25
PRKD1	0	genome.wustl.edu	37	14	30135292	30135292	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	14	30135292	30135292	T	G	SNP	PRKD1	ENST00000331968	human	ensembl	74_37	-1	known	missense	c.526	p.K176Q	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKD1	HGNC	ENSG00000184304				62	0	0	41	16	28.0702
UNC13C	0	genome.wustl.edu	37	15	54586259	54586259	+	Silent	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	15	54586259	54586259	T	C	SNP	UNC13C	ENST00000260323	human	ensembl	74_37	+1	known	silent	c.3985	p.L1329	0.973	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_Ca-dep_secretion_activator,pfam_C2_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13C	HGNC	ENSG00000137766				61	0	0	44	14	24.1379
HAPLN3	0	genome.wustl.edu	37	15	89424847	89424847	+	Silent	SNP	C	C	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	15	89424847	89424847	C	A	SNP	HAPLN3	ENST00000359595	human	ensembl	74_37	-1	known	silent	c.234	p.L78	0.001	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,pfscan_Link,pfscan_Ig-like_dom,prints_Link	-	no_errors	HAPLN3	HGNC	ENSG00000140511				85	0	0	66	4	5.71429
MAPK8IP3	0	genome.wustl.edu	37	16	1817631	1817631	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	16	1817631	1817631	G	A	SNP	MAPK8IP3	ENST00000250894	human	ensembl	74_37	+1	known	missense	c.3301	p.V1101I	0.999	superfamily_WD40_repeat_dom	pfam_JNK/Rab-associated_protein-1_N,superfamily_WD40_repeat_dom	-	no_errors	MAPK8IP3	HGNC	ENSG00000138834				29	0	0	12	10	45.4545
ENSG00000261727	0	genome.wustl.edu	37	16	32095637	32095637	+	RNA	SNP	G	G	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	16	32095637	32095637	G	C	SNP	ENSG00000261727	ENST00000566806	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-1166P10.6	Clone_based_vega_gene	ENSG00000261727				25	0	0	13	3	18.75
ZNF423	0	genome.wustl.edu	37	16	49671764	49671764	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	16	49671764	49671764	G	A	SNP	ZNF423	ENST00000262383	human	ensembl	74_37	-1	known	silent	c.1299	p.H433	0.993	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF423	HGNC	ENSG00000102935				69	0	0	42	11	20.7547
CDH1	0	genome.wustl.edu	37	16	68849586	68849586	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	16	68849586	68849586	G	A	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.1489	p.E497K	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				66	0	0	21	26	55.3191
HYDIN	0	genome.wustl.edu	37	16	70989374	70989374	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	16	70989374	70989374	C	G	SNP	HYDIN	ENST00000393567	human	ensembl	74_37	-1	putative	missense	c.6220	p.A2074P	0.999	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423				28	0	0	19	11	36.6667
DNAH9	0	genome.wustl.edu	37	17	11666890	11666890	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	17	11666890	11666890	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.7129	p.A2377S	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				22	0	0	12	9	42.8571
CCT6B	0	genome.wustl.edu	37	17	33267619	33267619	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	17	33267619	33267619	C	T	SNP	CCT6B	ENST00000314144	human	ensembl	74_37	-1	known	missense	c.907	p.D303N	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_zeta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_zeta	-	no_errors	CCT6B	HGNC	ENSG00000132141				21	0	0	15	3	16.6667
PLD2	0	genome.wustl.edu	37	17	4720037	4720037	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	17	4720037	4720037	C	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	silent	c.1578	p.F526	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219				108	0	0	79	27	25.4717
SLC39A11	0	genome.wustl.edu	37	17	70732808	70732808	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	17	70732808	70732808	C	A	SNP	SLC39A11	ENST00000542342	human	ensembl	74_37	-1	known	missense	c.673	p.A225S	0.983	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A11	HGNC	ENSG00000133195				79	0	0	45	5	10
MIB1	0	genome.wustl.edu	37	18	19427012	19427012	+	Silent	SNP	T	T	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	18	19427012	19427012	T	A	SNP	MIB1	ENST00000261537	human	ensembl	74_37	+1	known	silent	c.2319	p.G773	0.889	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Mib_Herc2,pfam_Znf_ZZ,superfamily_Ankyrin_rpt-contain_dom,smart_Znf_ZZ,smart_Ankyrin_rpt,smart_Znf_RING,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Znf_RING,pfscan_Znf_ZZ,prints_Ankyrin_rpt	-	no_errors	MIB1	HGNC	ENSG00000101752				24	0	0	25	5	16.6667
CABYR	0	genome.wustl.edu	37	18	21739566	21739566	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	18	21739566	21739566	C	T	SNP	CABYR	ENST00000399496	human	ensembl	74_37	+1	known	silent	c.672	p.T224	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040				44	0	0	29	11	27.5
ELP2	0	genome.wustl.edu	37	18	33747008	33747008	+	RNA	SNP	C	C	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	18	33747008	33747008	C	G	SNP	ELP2	ENST00000545302	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ELP2	HGNC	ENSG00000134759				46	0	0	19	14	42.4242
DCC	0	genome.wustl.edu	37	18	50912418	50912418	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	18	50912418	50912418	A	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.2365	p.S789R	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				20	0	0	10	5	33.3333
LAMA1	0	genome.wustl.edu	37	18	7117677	7117677	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	18	7117677	7117677	C	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	0.008	NULL	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				17	0	0	25	6	19.3548
NFIX	0	genome.wustl.edu	37	19	13192536	13192536	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	13192536	13192536	C	T	SNP	NFIX	ENST00000585575	human	ensembl	74_37	+1	known	missense	c.1097	p.T366M	1.000	pfam_CTF/NFI	pfam_CTF/NFI,pfam_CTF/NFI_DNA-bd_N,pfam_MAD_homology1_Dwarfin-type,smart_MAD_homology1_Dwarfin-type,pfscan_CTF/NFI_DNA-bd-dom	-	no_errors	NFIX	HGNC	ENSG00000008441				45	0	0	22	7	24.1379
ATP13A1	0	genome.wustl.edu	37	19	19756753	19756753	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	19756753	19756753	C	T	SNP	ATP13A1	ENST00000357324	human	ensembl	74_37	-1	known	missense	c.3290	p.S1097N	1.000	tigrfam_ATPase_P-typ_Cation_typ_V	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A1	HGNC	ENSG00000105726				166	0	0	97	31	24.2188
ZNF676	0	genome.wustl.edu	37	19	22364350	22364350	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	22364350	22364350	G	A	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	nonsense	c.169	p.Q57*	0.077	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				17	0	0	8	3	27.2727
ZNF568	0	genome.wustl.edu	37	19	37441098	37441098	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	37441098	37441098	A	C	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1043	p.N348T	0.001	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				33	0	0	28	4	12.5
THEG	0	genome.wustl.edu	37	19	375955	375955	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	375955	375955	G	A	SNP	THEG	ENST00000342640	human	ensembl	74_37	-1	known	nonsense	c.16	p.R6*	0.000	NULL	smart_THEG	-	no_errors	THEG	HGNC	ENSG00000105549				33	0	0	25	12	32.4324
LGALS7B	0	genome.wustl.edu	37	19	39281495	39281495	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	39281495	39281495	G	A	SNP	LGALS7B	ENST00000314980	human	ensembl	74_37	+1	known	missense	c.262	p.E88K	0.992	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS7B	HGNC	ENSG00000178934				12	0	0	7	4	36.3636
ATP1A3	0	genome.wustl.edu	37	19	42489213	42489213	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	42489213	42489213	G	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.850	p.L284I	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409				21	0	0	14	4	22.2222
RSPH6A	0	genome.wustl.edu	37	19	46307639	46307639	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	46307639	46307639	G	A	SNP	RSPH6A	ENST00000221538	human	ensembl	74_37	-1	known	silent	c.1524	p.D508	0.901	pfam_Radial_spoke	pfam_Radial_spoke	-	no_errors	RSPH6A	HGNC	ENSG00000104941				43	0	0	21	10	32.2581
ZNF665	0	genome.wustl.edu	37	19	53686190	53686190	+	RNA	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	53686190	53686190	G	A	SNP	ZNF665	ENST00000596373	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF665	HGNC	ENSG00000197497				49	0	0	29	10	25.641
MUC16	0	genome.wustl.edu	37	19	9070919	9070919	+	Silent	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	19	9070919	9070919	A	G	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.16527	p.S5509	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				31	0	0	24	5	17.2414
TTN	0	genome.wustl.edu	37	2	179605766	179605766	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	2	179605766	179605766	A	T	SNP	TTN	ENST00000342175	human	ensembl	74_37	-1	known	missense	c.11681	p.L3894H	0.004	superfamily_RNaseH-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				89	0	0	67	16	19.2771
SLC11A1	0	genome.wustl.edu	37	2	219251895	219251895	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	2	219251895	219251895	G	T	SNP	SLC11A1	ENST00000233202	human	ensembl	74_37	+1	known	missense	c.513	p.W171C	1.000	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	pfam_NRAMP-like,prints_NRAMP-like,tigrfam_NRAMP-like	-	no_errors	SLC11A1	HGNC	ENSG00000018280				63	0	0	40	10	20
FAM228A	0	genome.wustl.edu	37	2	24413383	24413383	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	2	24413383	24413383	G	T	SNP	FAM228A	ENST00000295150	human	ensembl	74_37	+1	known	missense	c.504	p.K168N	0.157	NULL	NULL	-	no_errors	FAM228A	HGNC	ENSG00000186453				48	0	0	29	2	6.45161
FNDC4	0	genome.wustl.edu	37	2	27717235	27717235	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	2	27717235	27717235	A	C	SNP	FNDC4	ENST00000264703	human	ensembl	74_37	-1	known	missense	c.232	p.Y78D	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC4	HGNC	ENSG00000115226				29	0	0	11	5	31.25
KCMF1	0	genome.wustl.edu	37	2	85276556	85276556	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	2	85276556	85276556	C	T	SNP	KCMF1	ENST00000409785	human	ensembl	74_37	+1	known	silent	c.669	p.S223	1.000	pfam_Di19_Zn_binding	pfam_Znf_ZZ,pfam_Di19_Zn_binding,smart_Znf_ZZ,smart_Znf_C2H2-like,pfscan_Znf_ZZ,pfscan_Znf_C2H2	-	no_errors	KCMF1	HGNC	ENSG00000176407				44	0	0	29	9	23.6842
BPIFB3	0	genome.wustl.edu	37	20	31652281	31652281	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	20	31652281	31652281	C	A	SNP	BPIFB3	ENST00000375494	human	ensembl	74_37	+1	known	missense	c.671	p.A224D	0.979	superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB3	HGNC	ENSG00000186190				45	0	0	27	2	6.89655
SYCP2	0	genome.wustl.edu	37	20	58440688	58440688	+	Silent	SNP	A	A	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	20	58440688	58440688	A	C	SNP	SYCP2	ENST00000357552	human	ensembl	74_37	-1	known	silent	c.4398	p.T1466	0.004	NULL	NULL	-	no_errors	SYCP2	HGNC	ENSG00000196074				28	0	0	20	7	25.9259
BAGE2	0	genome.wustl.edu	37	21	11098713	11098713	+	RNA	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	21	11098713	11098713	G	A	SNP	BAGE2	ENST00000470054	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	BAGE2	HGNC	ENSG00000187172				171	0	0	114	16	12.3077
SAMSN1	0	genome.wustl.edu	37	21	15872912	15872912	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	21	15872912	15872912	G	A	SNP	SAMSN1	ENST00000400566	human	ensembl	74_37	-1	known	nonsense	c.706	p.R236*	0.131	superfamily_SAM/pointed,superfamily_SH3_domain	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307				32	0	0	28	7	20
KRTAP10-10	0	genome.wustl.edu	37	21	46058077	46058077	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	21	46058077	46058077	A	T	SNP	KRTAP10-10	ENST00000380095	human	ensembl	74_37	+1	known	missense	c.743	p.K248M	0.142	NULL	NULL	-	no_errors	KRTAP10-10	HGNC	ENSG00000221859				65	0	0	39	7	15.2174
COL6A2	0	genome.wustl.edu	37	21	47539015	47539015	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	21	47539015	47539015	C	T	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	silent	c.1251	p.R417	0.014	pfam_Collagen	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173				21	0	0	7	5	41.6667
GRAMD1C	0	genome.wustl.edu	37	3	113652378	113652378	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	113652378	113652378	G	A	SNP	GRAMD1C	ENST00000358160	human	ensembl	74_37	+1	known	silent	c.1230	p.R410	0.971	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD1C	HGNC	ENSG00000178075				54	0	0	29	9	23.6842
ZNF80	0	genome.wustl.edu	37	3	113955522	113955522	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	113955522	113955522	C	T	SNP	ZNF80	ENST00000308095	human	ensembl	74_37	-1	known	missense	c.400	p.E134K	0.003	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF80	HGNC	ENSG00000174255				34	0	0	24	13	35.1351
MYLK	0	genome.wustl.edu	37	3	123376108	123376108	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	123376108	123376108	G	A	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	missense	c.4153	p.R1385C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				48	0	0	28	6	17.6471
CHST2	0	genome.wustl.edu	37	3	142840282	142840282	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	142840282	142840282	C	T	SNP	CHST2	ENST00000309575	human	ensembl	74_37	+1	known	silent	c.624	p.D208	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST2	HGNC	ENSG00000175040				74	0	0	51	13	20.3125
ITGA9	0	genome.wustl.edu	37	3	37555268	37555268	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	37555268	37555268	C	T	SNP	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	silent	c.912	p.F304	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				32	0	0	15	11	42.3077
SCN5A	0	genome.wustl.edu	37	3	38640419	38640419	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	38640419	38640419	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	silent	c.2013	p.S671	0.812	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873				64	0	0	58	14	19.4444
RHOA	0	genome.wustl.edu	37	3	49412905	49412905	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	49412905	49412905	C	T	SNP	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	missense	c.118	p.E40K	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				52	0	0	31	15	32.6087
CACNA2D3	0	genome.wustl.edu	37	3	54604065	54604065	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	54604065	54604065	C	T	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.822	p.I274	0.341	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				57	0	0	36	18	33.3333
ROBO1	0	genome.wustl.edu	37	3	78684982	78684982	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	78684982	78684982	T	C	SNP	ROBO1	ENST00000464233	human	ensembl	74_37	-1	known	missense	c.3314	p.Q1105R	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO1	HGNC	ENSG00000169855				42	0	0	28	9	24.3243
EPHA3	0	genome.wustl.edu	37	3	89528554	89528554	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	3	89528554	89528554	A	G	SNP	EPHA3	ENST00000336596	human	ensembl	74_37	+1	known	missense	c.2854	p.K952E	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA3	HGNC	ENSG00000044524				18	0	0	6	3	33.3333
ADAD1	0	genome.wustl.edu	37	4	123336638	123336638	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	123336638	123336638	C	A	SNP	ADAD1	ENST00000296513	human	ensembl	74_37	+1	known	missense	c.1354	p.P452T	1.000	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD1	HGNC	ENSG00000164113				73	0	0	41	13	24.0741
FAT4	0	genome.wustl.edu	37	4	126238415	126238415	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	126238415	126238415	G	A	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	silent	c.849	p.A283	0.622	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				25	0	0	24	14	36.8421
FAT4	0	genome.wustl.edu	37	4	126370752	126370752	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	126370752	126370752	T	G	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.8581	p.F2861V	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159				63	0	0	34	3	8.10811
DCHS2	0	genome.wustl.edu	37	4	155157788	155157788	+	Silent	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	155157788	155157788	G	T	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.6651	p.T2217	0.048	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				33	0	0	19	4	17.3913
SAP30	0	genome.wustl.edu	37	4	174292228	174292228	+	RNA	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	174292228	174292228	G	A	SNP	SAP30	ENST00000504618	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SAP30	HGNC	ENSG00000164105				23	0	0	7	5	41.6667
DHX15	0	genome.wustl.edu	37	4	24558017	24558017	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	24558017	24558017	T	C	SNP	DHX15	ENST00000336812	human	ensembl	74_37	-1	known	missense	c.718	p.M240V	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX15	HGNC	ENSG00000109606				46	0	0	24	7	22.5806
TLR10	0	genome.wustl.edu	37	4	38777160	38777160	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	38777160	38777160	C	T	SNP	TLR10	ENST00000308973	human	ensembl	74_37	-1	known	missense	c.52	p.E18K	0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123				37	0	0	17	3	15
ADAMTS3	0	genome.wustl.edu	37	4	73156747	73156747	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	73156747	73156747	T	C	SNP	ADAMTS3	ENST00000286657	human	ensembl	74_37	-1	known	missense	c.2756	p.K919R	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS3	HGNC	ENSG00000156140				23	0	0	18	4	18.1818
ANXA3	0	genome.wustl.edu	37	4	79500235	79500235	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	79500235	79500235	G	A	SNP	ANXA3	ENST00000264908	human	ensembl	74_37	+1	known	missense	c.158	p.R53Q	0.995	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinIII	-	no_errors	ANXA3	HGNC	ENSG00000138772				28	0	0	11	5	31.25
WDFY3	0	genome.wustl.edu	37	4	85661555	85661555	+	Silent	SNP	T	T	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	85661555	85661555	T	A	SNP	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	silent	c.6249	p.S2083	0.501	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625				35	0	0	25	5	16.6667
PTPN13	0	genome.wustl.edu	37	4	87643423	87643423	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	87643423	87643423	C	T	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.1444	p.R482W	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				35	0	0	34	8	19.0476
AQPEP	0	genome.wustl.edu	37	5	115298413	115298413	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	115298413	115298413	C	T	SNP	AQPEP	ENST00000357872	human	ensembl	74_37	+1	known	silent	c.99	p.L33	0.097	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	AQPEP	Uniprot_gn	ENSG00000172901				19	0	0	23	6	20.6897
PCDHA5	0	genome.wustl.edu	37	5	140203412	140203412	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	140203412	140203412	C	T	SNP	PCDHA5	ENST00000529859	human	ensembl	74_37	+1	known	silent	c.2052	p.G684	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA5	HGNC	ENSG00000204965				78	0	0	46	13	22.0339
PCDHA12	0	genome.wustl.edu	37	5	140256720	140256720	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	140256720	140256720	G	A	SNP	PCDHA12	ENST00000398631	human	ensembl	74_37	+1	known	missense	c.1663	p.V555M	0.994	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA12	HGNC	ENSG00000251664				152	0	0	85	40	32
PCDHB8	0	genome.wustl.edu	37	5	140558894	140558894	+	Silent	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	140558894	140558894	T	C	SNP	PCDHB8	ENST00000239444	human	ensembl	74_37	+1	known	silent	c.1279	p.L427	0.307	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322				236	0	0	197	23	10.4545
PCDHB11	0	genome.wustl.edu	37	5	140580096	140580096	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	140580096	140580096	A	G	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.749	p.K250R	0.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479				99	0	0	70	13	15.6627
PCDHGB6	0	genome.wustl.edu	37	5	140789552	140789552	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	140789552	140789552	G	A	SNP	PCDHGB6	ENST00000520790	human	ensembl	74_37	+1	known	missense	c.1783	p.D595N	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB6	HGNC	ENSG00000253305				32	0	0	24	5	17.2414
FAM105B	0	genome.wustl.edu	37	5	14681649	14681649	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	14681649	14681649	C	T	SNP	FAM105B	ENST00000284274	human	ensembl	74_37	+1	known	missense	c.401	p.T134M	1.000	prints_FAM105	prints_FAM105,prints_FAM105B,prints_FAM105A	-	no_errors	FAM105B	HGNC	ENSG00000154124				42	0	0	19	12	38.7097
RNF145	0	genome.wustl.edu	37	5	158630531	158630531	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	158630531	158630531	C	G	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.185	p.S62T	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				66	0	0	20	17	45.9459
RGS14	0	genome.wustl.edu	37	5	176797932	176797932	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	176797932	176797932	T	A	SNP	RGS14	ENST00000408923	human	ensembl	74_37	+1	known	missense	c.1154	p.V385E	0.509	pfam_Raf-like_ras-bd,smart_Raf-like_ras-bd,pfscan_Raf-like_ras-bd	pfam_Raf-like_ras-bd,pfam_RGS_dom,pfam_GoLoco_motif,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_Raf-like_ras-bd,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Raf-like_ras-bd,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS14	HGNC	ENSG00000169220				31	0	0	14	4	22.2222
OR2Y1	0	genome.wustl.edu	37	5	180166621	180166621	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	180166621	180166621	G	A	SNP	OR2Y1	ENST00000307832	human	ensembl	74_37	-1	known	silent	c.438	p.I146	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2Y1	HGNC	ENSG00000174339				40	0	0	13	6	31.5789
MEF2C	0	genome.wustl.edu	37	5	88018596	88018596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	88018596	88018596	G	A	SNP	MEF2C	ENST00000437473	human	ensembl	74_37	-1	known	missense	c.1247	p.A416V	1.000	NULL	pfam_TF_MADSbox,pfam_HJURP_C,superfamily_TF_MADSbox,smart_TF_MADSbox,prints_TF_MADSbox,pfscan_TF_MADSbox	-	no_errors	MEF2C	HGNC	ENSG00000081189				60	0	0	33	12	26.6667
GRIK2	0	genome.wustl.edu	37	6	102074313	102074313	+	Silent	SNP	A	A	G			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	6	102074313	102074313	A	G	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	silent	c.342	p.S114	0.896	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				96	0	0	91	5	5.20833
KIAA1919	0	genome.wustl.edu	37	6	111587266	111587266	+	Silent	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	6	111587266	111587266	T	C	SNP	KIAA1919	ENST00000368847	human	ensembl	74_37	+1	known	silent	c.501	p.D167	0.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214				11	0	0	7	5	41.6667
HLA-DRB5	0	genome.wustl.edu	37	6	32497910	32497910	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	6	32497910	32497910	T	C	SNP	HLA-DRB5	ENST00000374975	human	ensembl	74_37	-1	known	missense	c.92	p.D31G	0.003	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502				133	1	0.746269	75	9	10.7143
UBR2	0	genome.wustl.edu	37	6	42625808	42625808	+	Silent	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	6	42625808	42625808	G	A	SNP	UBR2	ENST00000372899	human	ensembl	74_37	+1	known	silent	c.2919	p.L973	0.989	NULL	pfam_ClpS_core,pfam_Znf_N-recognin,superfamily_Ribosomal_L7/12_C/ClpS-like,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR2	HGNC	ENSG00000024048				117	1	0.847458	47	61	56.4815
RIMS1	0	genome.wustl.edu	37	6	73110292	73110292	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	6	73110292	73110292	T	C	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4955	p.V1652A	1.000	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841				37	0	0	36	2	5.26316
DGKI	0	genome.wustl.edu	37	7	137237196	137237196	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	7	137237196	137237196	G	T	SNP	DGKI	ENST00000288490	human	ensembl	74_37	-1	known	missense	c.2066	p.A689D	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	DGKI	HGNC	ENSG00000157680				64	0	0	38	10	20.8333
PON2	0	genome.wustl.edu	37	7	95034618	95034618	+	RNA	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	7	95034618	95034618	G	A	SNP	PON2	ENST00000483292	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PON2	HGNC	ENSG00000105854				13	0	0	11	7	38.8889
RIMS2	0	genome.wustl.edu	37	8	104898169	104898169	+	Silent	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	8	104898169	104898169	T	C	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1342	p.L448	0.117	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				58	0	0	37	4	9.7561
CNBD1	0	genome.wustl.edu	37	8	88365898	88365898	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	8	88365898	88365898	T	A	SNP	CNBD1	ENST00000518476	human	ensembl	74_37	+1	known	missense	c.1187	p.L396H	0.229	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	CNBD1	HGNC	ENSG00000176571				28	0	0	18	4	18.1818
DCAF4L2	0	genome.wustl.edu	37	8	88885868	88885868	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	8	88885868	88885868	T	C	SNP	DCAF4L2	ENST00000319675	human	ensembl	74_37	-1	known	missense	c.332	p.E111G	0.000	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF4L2	HGNC	ENSG00000176566				66	0	0	50	9	15.2542
AMBP	0	genome.wustl.edu	37	9	116837249	116837249	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	9	116837249	116837249	G	T	SNP	AMBP	ENST00000265132	human	ensembl	74_37	-1	known	missense	c.328	p.H110N	0.937	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like	pfam_Prot_inh_Kunz-m,pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,superfamily_Prot_inh_Kunz-m,smart_Prot_inh_Kunz-m,pfscan_Prot_inh_Kunz-m,prints_A1-microglobln,prints_PstgldnD_synth,prints_Prot_inh_Kunz-m,prints_Lipocalin	-	no_errors	AMBP	HGNC	ENSG00000106927				32	0	0	22	2	8.33333
LURAP1L	0	genome.wustl.edu	37	9	12821406	12821406	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	9	12821406	12821406	G	A	SNP	LURAP1L	ENST00000319264	human	ensembl	74_37	+1	known	missense	c.334	p.V112I	0.997	NULL	NULL	-	no_errors	LURAP1L	HGNC	ENSG00000153714				76	0	0	51	19	27.1429
PCSK5	0	genome.wustl.edu	37	9	78804565	78804565	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	9	78804565	78804565	G	T	SNP	PCSK5	ENST00000545128	human	ensembl	74_37	+1	known	missense	c.2529	p.L843F	1.000	superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_EG-like_dom	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt_N_dom,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EG-like_dom,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139				18	0	0	22	2	8.33333
PLXNB3	0	genome.wustl.edu	37	X	153037379	153037379	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	X	153037379	153037379	C	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	silent	c.2647	p.L883	1.000	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753				8	0	0	5	7	58.3333
WDR13	0	genome.wustl.edu	37	X	48457987	48457987	+	Silent	SNP	C	C	T			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	X	48457987	48457987	C	T	SNP	WDR13	ENST00000218056	human	ensembl	74_37	+1	known	silent	c.405	p.S135	0.960	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR13	HGNC	ENSG00000101940				36	0	0	24	6	20
KIAA0907	0	genome.wustl.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	1	155886422	155886423	CT	-	DEL	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	frame_shift_del	c.1547_1546	p.R516fs	1.000:1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680				72	0	0	58	6	9.375
HIPK3	0	genome.wustl.edu	37	11	33358693	33358693	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	11	33358693	33358693	T	-	DEL	HIPK3	ENST00000303296	human	ensembl	74_37	+1	known	frame_shift_del	c.1294	p.C434fs	1.000	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK3	HGNC	ENSG00000110422				12	0	0	11	2	15.3846
EBPL	0	genome.wustl.edu	37	13	50235208	50235209	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	13	50235208	50235209	-	A	INS	EBPL	ENST00000242827	human	ensembl	74_37	-1	known	frame_shift_ins	c.517_516	p.N172fs	1.000:0.997	pfam_EBP	pfam_EBP	-	no_errors	EBPL	HGNC	ENSG00000123179				30	0	0	23	4	14.8148
PSMA6	0	genome.wustl.edu	37	14	35782215	35782216	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	14	35782215	35782216	-	A	INS	PSMA6	ENST00000261479	human	ensembl	74_37	+1	known	frame_shift_ins	c.538_539	p.V183fs	1.000:1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA6	HGNC	ENSG00000100902				86	0	0	82	5	5.74713
ENSG00000257275	0	genome.wustl.edu	37	14	96178149	96178150	+	RNA	DEL	AG	AG	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	14	96178149	96178150	AG	-	DEL	ENSG00000257275	ENST00000547644	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	RP11-164H13.1	Clone_based_vega_gene	ENSG00000257275				13	0	0	11	4	26.6667
NIPA2	0	genome.wustl.edu	37	15	23006451	23006454	+	Frame_Shift_Del	DEL	CACT	CACT	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	CACT	CACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	15	23006451	23006454	CACT	-	DEL	NIPA2	ENST00000337451	human	ensembl	74_37	-1	known	frame_shift_del	c.853_850	p.S284fs	1.000:1.000:1.000:1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPA2	HGNC	ENSG00000140157				43	0	0	28	7	20
RNF43	0	genome.wustl.edu	37	17	56492797	56492798	+	Frame_Shift_Ins	INS	-	-	A			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	17	56492797	56492798	-	A	INS	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_ins	c.142_141	p.I47fs	1.000:1.000	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375				53	0	0	25	11	30.5556
SLC2A9	0	genome.wustl.edu	37	4	10027510	10027510	+	RNA	DEL	A	A	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	4	10027510	10027510	A	-	DEL	SLC2A9	ENST00000509214	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC2A9	HGNC	ENSG00000109667				25	0	0	19	4	17.3913
ITK	0	genome.wustl.edu	37	5	156679702	156679702	+	RNA	DEL	C	C	-			TCGA-BR-A4QM-01A-12D-A25D-08	TCGA-BR-A4QM-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2efeb73-85c8-4dce-bdd0-9d7010bf0a38	331ffab8-27ab-470a-886f-91f7264b8454	5	156679702	156679702	C	-	DEL	ITK	ENST00000519749	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ITK	HGNC	ENSG00000113263				47	0	0	25	7	21.875
