Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VAV3	0	genome.wustl.edu	37	1	108247235	108247235	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	1	108247235	108247235	C	T	SNP	VAV3	ENST00000370056	human	ensembl	74_37	-1	known	missense	c.1642	p.G548R	1.000	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain,prints_SM22_calponin	-	no_errors	VAV3	HGNC	ENSG00000134215				127	0	0	150	8	5.06329
OR2T27	0	genome.wustl.edu	37	1	248813773	248813773	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	1	248813773	248813773	C	T	SNP	OR2T27	ENST00000344889	human	ensembl	74_37	-1	known	missense	c.413	p.R138H	0.043	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701				102	0	0	95	17	15.1786
ARID1A	0	genome.wustl.edu	37	1	27059176	27059176	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	1	27059176	27059176	C	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.1813	p.Q605*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713				188	1	0.529101	125	17	11.9718
NASP	0	genome.wustl.edu	37	1	46073406	46073406	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	1	46073406	46073406	A	C	SNP	NASP	ENST00000402363	human	ensembl	74_37	+1	known	missense	c.829	p.K277Q	0.017	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780				51	0	0	49	3	5.76923
ADARB2	0	genome.wustl.edu	37	10	1230815	1230815	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	10	1230815	1230815	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	missense	c.2029	p.R677W	0.282	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736				31	0	0	20	3	13.0435
SLC22A8	0	genome.wustl.edu	37	11	62763206	62763206	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	11	62763206	62763206	C	T	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	missense	c.971	p.R324H	0.943	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A8	HGNC	ENSG00000149452				177	0	0	130	18	12.1622
NLRP14	0	genome.wustl.edu	37	11	7064427	7064427	+	Silent	SNP	A	A	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	11	7064427	7064427	A	T	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	silent	c.1170	p.T390	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077				231	0	0	283	24	7.81759
TRIM49C	0	genome.wustl.edu	37	11	89774323	89774323	+	Missense_Mutation	SNP	A	A	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	11	89774323	89774323	A	T	SNP	TRIM49C	ENST00000448984	human	ensembl	74_37	+1	known	missense	c.964	p.T322S	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49C	HGNC	ENSG00000204449				103	0	0	101	13	11.4035
NOS1	0	genome.wustl.edu	37	12	117768788	117768788	+	Silent	SNP	T	T	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	12	117768788	117768788	T	A	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	silent	c.87	p.G29	0.210	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250				140	0	0	117	15	11.3636
CABP1	0	genome.wustl.edu	37	12	121098064	121098064	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	12	121098064	121098064	G	T	SNP	CABP1	ENST00000316803	human	ensembl	74_37	+1	known	missense	c.751	p.G251C	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP1	HGNC	ENSG00000157782				67	0	0	60	7	10.4478
AVIL	0	genome.wustl.edu	37	12	58193602	58193602	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	12	58193602	58193602	C	G	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	missense	c.2322	p.E774D	0.995	superfamily_Villin_headpiece,pfscan_Villin_headpiece	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407				331	0	0	311	28	8.25959
M6PR	0	genome.wustl.edu	37	12	9096098	9096098	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	12	9096098	9096098	T	C	SNP	M6PR	ENST00000000412	human	ensembl	74_37	-1	known	missense	c.487	p.K163E	1.000	superfamily_Man6P_isomerase_rcpt-bd_dom,prints_Man_6_P_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,prints_Man_6_P_rcpt	-	no_errors	M6PR	HGNC	ENSG00000003056				155	0	0	172	12	6.52174
SPG11	0	genome.wustl.edu	37	15	44867122	44867122	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	15	44867122	44867122	A	G	SNP	SPG11	ENST00000261866	human	ensembl	74_37	-1	known	missense	c.5984	p.L1995P	0.999	NULL	NULL	-	no_errors	SPG11	HGNC	ENSG00000104133				199	0	0	153	30	16.3934
MYEF2	0	genome.wustl.edu	37	15	48460981	48460981	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	15	48460981	48460981	C	T	SNP	MYEF2	ENST00000324324	human	ensembl	74_37	-1	known	missense	c.217	p.G73R	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	MYEF2	HGNC	ENSG00000104177				134	0	0	136	10	6.84932
CHRNA3	0	genome.wustl.edu	37	15	78909415	78909415	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	15	78909415	78909415	G	C	SNP	CHRNA3	ENST00000326828	human	ensembl	74_37	-1	known	missense	c.328	p.R110G	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644				44	0	0	47	4	7.84314
CHRNA3	0	genome.wustl.edu	37	15	78909416	78909416	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	15	78909416	78909416	C	T	SNP	CHRNA3	ENST00000326828	human	ensembl	74_37	-1	known	missense	c.327	p.M109I	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644				45	0	0	48	4	7.69231
SCNN1G	0	genome.wustl.edu	37	16	23197794	23197794	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	16	23197794	23197794	C	G	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.202	p.L68V	0.129	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828				96	0	0	88	16	15.3846
SLC5A5	0	genome.wustl.edu	37	19	18001723	18001723	+	Silent	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	18001723	18001723	G	A	SNP	SLC5A5	ENST00000222248	human	ensembl	74_37	+1	known	silent	c.1680	p.P560	0.448	NULL	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A5	HGNC	ENSG00000105641				244	0	0	183	23	11.165
ZNF461	0	genome.wustl.edu	37	19	37130636	37130636	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	37130636	37130636	T	A	SNP	ZNF461	ENST00000588268	human	ensembl	74_37	-1	known	missense	c.611	p.H204L	0.062	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF461	HGNC	ENSG00000197808				193	0	0	160	23	12.5683
CCDC114	0	genome.wustl.edu	37	19	48806042	48806042	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	48806042	48806042	C	A	SNP	CCDC114	ENST00000315396	human	ensembl	74_37	-1	known	missense	c.1038	p.L346F	0.435	NULL	NULL	-	no_errors	CCDC114	HGNC	ENSG00000105479				191	0	0	153	26	14.5251
PTPRS	0	genome.wustl.edu	37	19	5258067	5258067	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	5258067	5258067	C	T	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.670	p.G224S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				170	0	0	121	19	13.5714
ZNF814	0	genome.wustl.edu	37	19	58385762	58385762	+	Silent	SNP	C	C	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	58385762	58385762	C	G	SNP	ZNF814	ENST00000435989	human	ensembl	74_37	-1	known	silent	c.996	p.S332	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF814	HGNC	ENSG00000204514				8	0	0	14	3	17.6471
ZNF132	0	genome.wustl.edu	37	19	58946280	58946280	+	Silent	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	19	58946280	58946280	G	A	SNP	ZNF132	ENST00000254166	human	ensembl	74_37	-1	known	silent	c.531	p.D177	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF132	HGNC	ENSG00000131849				179	0	0	189	21	10
CNTNAP5	0	genome.wustl.edu	37	2	125660527	125660527	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	2	125660527	125660527	G	A	SNP	CNTNAP5	ENST00000431078	human	ensembl	74_37	+1	known	missense	c.3502	p.V1168I	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP5	HGNC	ENSG00000155052				34	0	0	32	5	13.5135
FANCD2	0	genome.wustl.edu	37	3	10081483	10081483	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	3	10081483	10081483	G	A	SNP	FANCD2	ENST00000287647	human	ensembl	74_37	+1	known	missense	c.649	p.E217K	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	FANCD2	HGNC	ENSG00000144554				159	0	0	144	17	10.559
RASA2	0	genome.wustl.edu	37	3	141305519	141305519	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	3	141305519	141305519	C	T	SNP	RASA2	ENST00000452898	human	ensembl	74_37	+1	known	missense	c.1858	p.R620W	1.000	pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_RasGAP,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGAP,pfam_C2_dom,pfam_Pleckstrin_homology,pfam_Znf_Btk_motif,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_C2_dom,smart_RasGAP,smart_Pleckstrin_homology,smart_Znf_Btk_motif,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_Znf_Btk_motif,pfscan_RasGAP,prints_Znf_Btk_motif	-	no_errors	RASA2	HGNC	ENSG00000155903				63	0	0	53	9	14.5161
OTOL1	0	genome.wustl.edu	37	3	161221712	161221712	+	Silent	SNP	T	T	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	3	161221712	161221712	T	C	SNP	OTOL1	ENST00000327928	human	ensembl	74_37	+1	known	silent	c.1416	p.T472	0.000	pfscan_C1q	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	OTOL1	HGNC	ENSG00000182447				58	0	0	62	7	10.1449
SLC6A20	0	genome.wustl.edu	37	3	45814049	45814049	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	3	45814049	45814049	C	A	SNP	SLC6A20	ENST00000358525	human	ensembl	74_37	-1	known	missense	c.641	p.G214V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A20	HGNC	ENSG00000163817				62	0	0	54	8	12.9032
SPATA18	0	genome.wustl.edu	37	4	52945045	52945045	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	4	52945045	52945045	C	A	SNP	SPATA18	ENST00000295213	human	ensembl	74_37	+1	known	missense	c.1165	p.Q389K	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071				290	0	0	290	18	5.84416
KIAA1211	0	genome.wustl.edu	37	4	57189672	57189672	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	4	57189672	57189672	C	T	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	missense	c.3317	p.T1106M	0.315	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265				40	0	0	39	5	11.3636
NOA1	0	genome.wustl.edu	37	4	57842918	57842918	+	Silent	SNP	C	C	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	4	57842918	57842918	C	G	SNP	NOA1	ENST00000264230	human	ensembl	74_37	-1	known	silent	c.834	p.L278	0.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	NOA1	HGNC	ENSG00000084092				53	0	0	56	3	5.08475
WNT8A	0	genome.wustl.edu	37	5	137426675	137426675	+	Silent	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	5	137426675	137426675	G	A	SNP	WNT8A	ENST00000361560	human	ensembl	74_37	+1	known	silent	c.969	p.K323	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492				112	0	0	124	14	10.1449
KDM3B	0	genome.wustl.edu	37	5	137734048	137734048	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	5	137734048	137734048	G	C	SNP	KDM3B	ENST00000314358	human	ensembl	74_37	+1	known	missense	c.3013	p.E1005Q	1.000	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM3B	HGNC	ENSG00000120733				123	0	0	115	18	13.5338
PCDHA8	0	genome.wustl.edu	37	5	140222519	140222519	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	5	140222519	140222519	G	A	SNP	PCDHA8	ENST00000531613	human	ensembl	74_37	+1	known	missense	c.1613	p.R538H	0.446	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA8	HGNC	ENSG00000204962				39	0	0	38	19	33.3333
ZNF300P1	0	genome.wustl.edu	37	5	150310621	150310621	+	RNA	SNP	G	G	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	5	150310621	150310621	G	T	SNP	ZNF300P1	ENST00000520773	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083				34	0	0	38	4	9.52381
AGXT2	0	genome.wustl.edu	37	5	35033593	35033593	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	5	35033593	35033593	T	C	SNP	AGXT2	ENST00000231420	human	ensembl	74_37	-1	known	missense	c.647	p.E216G	0.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AGXT2	HGNC	ENSG00000113492				105	0	0	114	18	13.6364
TBP	0	genome.wustl.edu	37	6	170871034	170871034	+	Silent	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	6	170871034	170871034	G	A	SNP	TBP	ENST00000230354	human	ensembl	74_37	+1	known	silent	c.210	p.Q70	0.924	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592				20	0	0	20	4	16.6667
ORAI2	0	genome.wustl.edu	37	7	102079422	102079422	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	7	102079422	102079422	G	A	SNP	ORAI2	ENST00000356387	human	ensembl	74_37	+1	known	missense	c.19	p.V7M	1.000	NULL	pfam_CRAC_channel	-	no_errors	ORAI2	HGNC	ENSG00000160991				224	0	0	211	24	10.2128
JHDM1D	0	genome.wustl.edu	37	7	139829297	139829297	+	Silent	SNP	A	A	G			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	7	139829297	139829297	A	G	SNP	JHDM1D	ENST00000397560	human	ensembl	74_37	-1	known	silent	c.555	p.Y185	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	JHDM1D	HGNC	ENSG00000006459				135	0	0	121	21	14.7887
KRIT1	0	genome.wustl.edu	37	7	91864228	91864228	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	7	91864228	91864228	C	T	SNP	KRIT1	ENST00000340022	human	ensembl	74_37	-1	known	missense	c.739	p.V247M	1.000	NULL	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631				149	0	0	110	10	8.33333
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99021504	99021504	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	7	99021504	99021504	T	C	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	missense	c.1961	p.Y654C	1.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919				153	0	0	128	18	12.3288
RGS3	0	genome.wustl.edu	37	9	116346507	116346507	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	9	116346507	116346507	C	T	SNP	RGS3	ENST00000350696	human	ensembl	74_37	+1	known	missense	c.2815	p.R939C	1.000	NULL	pfam_RGS_dom,pfam_C2_dom,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_C2_dom,superfamily_PDZ,smart_C2_dom,smart_PDZ,smart_Regulat_G_prot_signal_superfam,pfscan_C2_dom,pfscan_PDZ,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS3	HGNC	ENSG00000138835				71	0	0	67	4	5.6338
COL4A5	0	genome.wustl.edu	37	X	107802349	107802349	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	X	107802349	107802349	G	T	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.197	p.G66V	1.000	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153				207	0	0	160	24	13.0435
TLR8	0	genome.wustl.edu	37	X	12939190	12939190	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	X	12939190	12939190	G	T	SNP	TLR8	ENST00000218032	human	ensembl	74_37	+1	known	missense	c.2031	p.K677N	0.000	NULL	pfam_Leu-rich_rpt,pfam_TIR_dom,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR8	HGNC	ENSG00000101916				209	1	0.47619	234	13	5.26316
MAGIX	0	genome.wustl.edu	37	X	49021179	49021179	+	Silent	SNP	A	A	T			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	X	49021179	49021179	A	T	SNP	MAGIX	ENST00000376338	human	ensembl	74_37	+1	known	silent	c.81	p.V27	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621				301	0	0	257	54	17.3633
SMAD4	0	genome.wustl.edu	37	18	48591920	48591949	+	In_Frame_Del	DEL	CTTTTGTTTGGGTCAACTCTCCAATGTCCA	CTTTTGTTTGGGTCAACTCTCCAATGTCCA	-			TCGA-CD-5803-01A-11D-1600-08	TCGA-CD-5803-10A-01D-1600-08	CTTTTGTTTGGGTCAACTCTCCAATGTCCA	CTTTTGTTTGGGTCAACTCTCCAATGTCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1243c079-6330-4100-a59d-7710770aaa84	b68a283f-dd10-44d6-b5c5-594ef218d469	18	48591920	48591949	CTTTTGTTTGGGTCAACTCTCCAATGTCCA	-	DEL	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	in_frame_del	c.1083_1112	p.FCLGQLSNVH362in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				92	0	0	70	6	7.89474
