Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KAZN	0	genome.wustl.edu	37	1	15386799	15386799	+	Splice_Site	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	15386799	15386799	G	A	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	splice_site	c.1047+1	e6+1	1.000	-	-	-	no_errors	KAZN	HGNC	ENSG00000189337				109	0	0	95	22	18.8034
MNDA	0	genome.wustl.edu	37	1	158813155	158813155	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	158813155	158813155	G	A	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.352	p.A118T	0.000	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				15	0	0	20	3	13.0435
GPR161	0	genome.wustl.edu	37	1	168066199	168066199	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	168066199	168066199	T	C	SNP	GPR161	ENST00000537209	human	ensembl	74_37	-1	known	missense	c.706	p.R236G	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR161	HGNC	ENSG00000143147				46	0	0	51	24	32
LAMC1	0	genome.wustl.edu	37	1	183094538	183094538	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	183094538	183094538	A	C	SNP	LAMC1	ENST00000258341	human	ensembl	74_37	+1	known	missense	c.2654	p.N885T	0.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862				98	0	0	93	17	15.4545
ZYG11B	0	genome.wustl.edu	37	1	53262458	53262458	+	Splice_Site	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	53262458	53262458	T	C	SNP	ZYG11B	ENST00000294353	human	ensembl	74_37	+1	known	splice_site	c.1485+2	e8+2	1.000	-	-	-	no_errors	ZYG11B	HGNC	ENSG00000162378				62	0	0	58	10	14.7059
SORCS3	0	genome.wustl.edu	37	10	106970990	106970990	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	10	106970990	106970990	G	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.2357	p.S786I	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395				35	0	0	31	13	29.5455
PWWP2B	0	genome.wustl.edu	37	10	134219292	134219292	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	10	134219292	134219292	G	A	SNP	PWWP2B	ENST00000305233	human	ensembl	74_37	+1	known	missense	c.1288	p.E430K	1.000	NULL	pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	PWWP2B	HGNC	ENSG00000171813				27	0	0	19	12	38.7097
PRKCQ	0	genome.wustl.edu	37	10	6520982	6520982	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	10	6520982	6520982	G	A	SNP	PRKCQ	ENST00000263125	human	ensembl	74_37	-1	known	missense	c.1325	p.T442M	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675				60	0	0	52	14	21.2121
MICALCL	0	genome.wustl.edu	37	11	12316180	12316180	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	11	12316180	12316180	G	A	SNP	MICALCL	ENST00000256186	human	ensembl	74_37	+1	known	missense	c.1202	p.R401K	0.475	smart_ProQ/FinO	pfam_DUF3585,smart_ProQ/FinO	-	no_errors	MICALCL	HGNC	ENSG00000133808				130	0	0	109	23	17.4242
VWCE	0	genome.wustl.edu	37	11	61058792	61058792	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	11	61058792	61058792	C	T	SNP	VWCE	ENST00000335613	human	ensembl	74_37	-1	known	missense	c.239	p.C80Y	1.000	smart_EG-like_dom	pfam_VWF_C,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWF_C,smart_VWC_out,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	VWCE	HGNC	ENSG00000167992				23	0	0	31	2	6.06061
SCGB1D4	0	genome.wustl.edu	37	11	62064987	62064987	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	11	62064987	62064987	C	T	SNP	SCGB1D4	ENST00000358585	human	ensembl	74_37	-1	known	missense	c.199	p.D67N	0.001	pfam_Secretoglobin,superfamily_Secretoglobin	pfam_Secretoglobin,superfamily_Secretoglobin	-	no_errors	SCGB1D4	HGNC	ENSG00000197745				254	0	0	214	50	18.9394
FAT3	0	genome.wustl.edu	37	11	92532764	92532764	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	11	92532764	92532764	C	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.6585	p.V2195	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323				22	0	0	19	4	17.3913
TMEM132D	0	genome.wustl.edu	37	12	129558572	129558572	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	12	129558572	129558572	A	G	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.3148	p.F1050L	0.998	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952				59	0	0	69	13	15.8537
MIPEP	0	genome.wustl.edu	37	13	24384033	24384033	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	13	24384033	24384033	A	C	SNP	MIPEP	ENST00000382172	human	ensembl	74_37	-1	known	missense	c.1684	p.C562G	1.000	pfam_Pept_M3A_M3B	pfam_Pept_M3A_M3B	-	no_errors	MIPEP	HGNC	ENSG00000027001				104	0	0	71	18	20.2247
USPL1	0	genome.wustl.edu	37	13	31231880	31231880	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	13	31231880	31231880	G	T	SNP	USPL1	ENST00000255304	human	ensembl	74_37	+1	known	missense	c.1666	p.A556S	0.000	NULL	pfscan_Peptidase_C19/C67	-	no_errors	USPL1	HGNC	ENSG00000132952				173	0	0	300	29	8.81459
KL	0	genome.wustl.edu	37	13	33638175	33638175	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	13	33638175	33638175	C	A	SNP	KL	ENST00000380099	human	ensembl	74_37	+1	known	missense	c.2891	p.P964Q	1.000	superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KL	HGNC	ENSG00000133116				90	0	0	90	190	67.8571
OR4K1	0	genome.wustl.edu	37	14	20404281	20404281	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	20404281	20404281	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	silent	c.456	p.G152	0.159	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249				91	0	0	72	21	22.5806
CHD8	0	genome.wustl.edu	37	14	21899993	21899993	+	RNA	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	21899993	21899993	T	C	SNP	CHD8	ENST00000553651	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CHD8	HGNC	ENSG00000100888				38	0	0	42	16	27.5862
MDGA2	0	genome.wustl.edu	37	14	47314968	47314968	+	Splice_Site	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	47314968	47314968	C	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	splice_site	c.2989+1	e16+1	1.000	-	-	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781				59	0	0	30	20	40
NIN	0	genome.wustl.edu	37	14	51219348	51219348	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	51219348	51219348	C	T	SNP	NIN	ENST00000245441	human	ensembl	74_37	-1	known	missense	c.4838	p.R1613H	0.998	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				206	0	0	158	39	19.797
RGS6	0	genome.wustl.edu	37	14	72941366	72941366	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	72941366	72941366	C	T	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	nonsense	c.652	p.R218*	1.000	NULL	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732				47	0	0	41	9	18
EIF2B2	0	genome.wustl.edu	37	14	75469999	75469999	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	14	75469999	75469999	G	A	SNP	EIF2B2	ENST00000266126	human	ensembl	74_37	+1	known	missense	c.185	p.R62H	1.000	pfam_IF-2B-related	pfam_IF-2B-related	-	no_errors	EIF2B2	HGNC	ENSG00000119718				31	0	0	26	3	10.3448
GABRB3	0	genome.wustl.edu	37	15	26793117	26793117	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	15	26793117	26793117	G	C	SNP	GABRB3	ENST00000299267	human	ensembl	74_37	-1	known	missense	c.1245	p.F415L	0.082	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB3	HGNC	ENSG00000166206				46	0	0	43	7	14
SLC12A1	0	genome.wustl.edu	37	15	48533736	48533736	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	15	48533736	48533736	G	A	SNP	SLC12A1	ENST00000380993	human	ensembl	74_37	+1	known	missense	c.1240	p.G414R	1.000	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt2,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A1	HGNC	ENSG00000074803				203	0	0	180	32	15.0943
EFTUD1P1	0	genome.wustl.edu	37	15	84770845	84770845	+	RNA	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	15	84770845	84770845	G	A	SNP	EFTUD1P1	ENST00000558187	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EFTUD1P1	HGNC	ENSG00000259404				45	0	0	43	6	12.2449
DNAH3	0	genome.wustl.edu	37	16	21073986	21073986	+	Silent	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	16	21073986	21073986	G	A	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.3537	p.N1179	0.979	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486				29	0	0	24	10	29.4118
RGS11	0	genome.wustl.edu	37	16	320806	320806	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	16	320806	320806	G	A	SNP	RGS11	ENST00000397770	human	ensembl	74_37	-1	known	missense	c.1004	p.A335V	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS11	HGNC	ENSG00000076344				32	0	0	19	7	26.9231
DNAH9	0	genome.wustl.edu	37	17	11532791	11532791	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	11532791	11532791	G	A	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.1408	p.V470I	0.309	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				84	0	0	93	18	16.2162
FLJ36000	0	genome.wustl.edu	37	17	21906514	21906514	+	RNA	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	21906514	21906514	A	G	SNP	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795				10	0	0	5	3	37.5
SGK494	0	genome.wustl.edu	37	17	26940280	26940280	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	26940280	26940280	C	T	SNP	SGK494	ENST00000301037	human	ensembl	74_37	-1	known	silent	c.408	p.K136	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	SGK494	Clone_based_vega_gene	ENSG00000167524				54	0	0	57	6	9.52381
PLEKHM1P	0	genome.wustl.edu	37	17	62820746	62820746	+	RNA	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	62820746	62820746	G	T	SNP	PLEKHM1P	ENST00000397718	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHM1P	HGNC	ENSG00000214176				10	0	0	7	10	58.8235
TP53	0	genome.wustl.edu	37	17	7574018	7574018	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	7574018	7574018	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.1009	p.R337C	0.692	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				42	0	0	19	15	44.1176
CHD3	0	genome.wustl.edu	37	17	7809236	7809236	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	7809236	7809236	G	A	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.4287	p.M1429I	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				92	0	0	89	12	11.8812
RPL26	0	genome.wustl.edu	37	17	8280949	8280949	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	8280949	8280949	T	C	SNP	RPL26	ENST00000293842	human	ensembl	74_37	-1	known	missense	c.371	p.K124R	1.000	superfamily_Translation_prot_SH3-like	pfam_KOW,superfamily_Translation_prot_SH3-like,smart_KOW,tigrfam_Ribosomal_L26/L24P_euk/arc	-	no_errors	RPL26	HGNC	ENSG00000161970				71	0	0	46	13	22.0339
LOC644669	0	genome.wustl.edu	37	18	15325992	15325992	+	RNA	SNP	C	C	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	18	15325992	15325992	C	A	SNP	LOC644669	ENST00000455308	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	AP005901.1	Clone_based_vega_gene	ENSG00000215512				30	0	0	38	8	17.3913
SMAD4	0	genome.wustl.edu	37	18	48591825	48591825	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	18	48591825	48591825	G	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.988	p.E330K	1.000	pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646				118	0	0	73	16	17.9775
CYP4F2	0	genome.wustl.edu	37	19	15989716	15989716	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	15989716	15989716	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	silent	c.1428	p.A476	0.185	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115				49	0	0	27	22	44.898
JAK3	0	genome.wustl.edu	37	19	17951134	17951134	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	17951134	17951134	T	C	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1159	p.N387D	0.406	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639				25	0	0	19	8	29.6296
RYR1	0	genome.wustl.edu	37	19	38939333	38939333	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	38939333	38939333	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	silent	c.1002	p.G334	0.331	pfam_MIR_motif,superfamily_MIR_motif,smart_MIR_motif	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218				129	0	0	118	11	8.52713
SHANK1	0	genome.wustl.edu	37	19	51170296	51170296	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	51170296	51170296	C	T	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.4945	p.A1649T	0.630	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				14	0	0	11	5	31.25
HAS1	0	genome.wustl.edu	37	19	52216778	52216778	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	52216778	52216778	C	T	SNP	HAS1	ENST00000601714	human	ensembl	74_37	-1	known	missense	c.1660	p.A554T	0.959	NULL	pfam_Chitin_synth_fng,pfam_Glyco_trans_2	-	no_errors	HAS1	HGNC	ENSG00000105509				15	0	0	11	4	26.6667
BRSK1	0	genome.wustl.edu	37	19	55800942	55800942	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	55800942	55800942	C	T	SNP	BRSK1	ENST00000590333	human	ensembl	74_37	+1	known	missense	c.460	p.R154C	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	BRSK1	HGNC	ENSG00000160469				71	0	0	64	5	7.24638
MIR663B	0	genome.wustl.edu	37	2	133014556	133014556	+	RNA	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	133014556	133014556	C	T	SNP	MIR663B	ENST00000408361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	MIR663B	HGNC	ENSG00000221288				38	0	0	44	10	18.5185
GTF3C3	0	genome.wustl.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	197657782	197657782	C	T	SNP	GTF3C3	ENST00000263956	human	ensembl	74_37	-1	known	silent	c.309	p.E103	0.968	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GTF3C3	HGNC	ENSG00000119041				41	0	0	43	3	6.52174
COQ10B	0	genome.wustl.edu	37	2	198327261	198327261	+	Splice_Site	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	198327261	198327261	A	G	SNP	COQ10B	ENST00000263960	human	ensembl	74_37	+1	known	splice_site	c.255-2	e3-2	1.000	-	-	-	no_errors	COQ10B	HGNC	ENSG00000115520				28	0	0	32	5	13.5135
MAP2	0	genome.wustl.edu	37	2	210560612	210560612	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	210560612	210560612	G	C	SNP	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	missense	c.3718	p.E1240Q	0.989	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018				54	0	0	51	9	15
IRS1	0	genome.wustl.edu	37	2	227662551	227662551	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	227662551	227662551	G	A	SNP	IRS1	ENST00000305123	human	ensembl	74_37	-1	known	nonsense	c.904	p.R302*	0.122	NULL	pfam_Insln_rcpt_S1,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,smart_Insln_rcpt_S1,prints_Insln_rcpt_S1,pfscan_Pleckstrin_homology,pfscan_Insln_rcpt_S1	-	no_errors	IRS1	HGNC	ENSG00000169047				120	0	0	104	26	20
ANO7	0	genome.wustl.edu	37	2	242147068	242147068	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	2	242147068	242147068	G	A	SNP	ANO7	ENST00000274979	human	ensembl	74_37	+1	known	missense	c.1222	p.A408T	0.854	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO7	HGNC	ENSG00000146205				148	1	0.671141	90	76	45.7831
NDUFAF5	0	genome.wustl.edu	37	20	13775515	13775515	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	20	13775515	13775515	T	C	SNP	NDUFAF5	ENST00000378106	human	ensembl	74_37	+1	known	missense	c.407	p.V136A	0.928	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Put_SAM_MeTrfase	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Put_SAM_MeTrfase	-	no_errors	NDUFAF5	HGNC	ENSG00000101247				25	0	0	23	4	14.8148
SLC4A11	0	genome.wustl.edu	37	20	3209945	3209945	+	RNA	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	20	3209945	3209945	C	T	SNP	SLC4A11	ENST00000488544	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC4A11	HGNC	ENSG00000088836				51	0	0	55	13	19.1176
CBFA2T2	0	genome.wustl.edu	37	20	32232209	32232209	+	Silent	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	20	32232209	32232209	G	A	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	silent	c.1572	p.A524	0.031	pfam_Znf_MYND,pfscan_Znf_MYND,prints_ETO	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699				97	0	0	122	19	13.4752
FBXO7	0	genome.wustl.edu	37	22	32881120	32881120	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	22	32881120	32881120	G	T	SNP	FBXO7	ENST00000266087	human	ensembl	74_37	+1	known	missense	c.711	p.Q237H	1.000	pfam_FP_dom	pfam_FP_dom,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO7	HGNC	ENSG00000100225				79	0	0	66	23	25.8427
ZC3H7B	0	genome.wustl.edu	37	22	41752693	41752693	+	Silent	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	22	41752693	41752693	G	A	SNP	ZC3H7B	ENST00000351589	human	ensembl	74_37	+1	known	silent	c.2562	p.K854	1.000	NULL	pfam_Znf_CCCH,pfam_TPR_1,smart_TPR_repeat,smart_Znf_CCCH,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	ZC3H7B	HGNC	ENSG00000100403				134	0	0	116	22	15.942
PANX2	0	genome.wustl.edu	37	22	50616142	50616142	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	22	50616142	50616142	G	A	SNP	PANX2	ENST00000395842	human	ensembl	74_37	+1	known	missense	c.1001	p.R334Q	1.000	pfscan_Innexin	pfam_Innexin,pfscan_Innexin	-	no_errors	PANX2	HGNC	ENSG00000073150				107	1	0.925926	83	22	20.9524
PLXNB2	0	genome.wustl.edu	37	22	50728614	50728614	+	Missense_Mutation	SNP	A	A	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	22	50728614	50728614	A	T	SNP	PLXNB2	ENST00000359337	human	ensembl	74_37	-1	known	missense	c.400	p.Y134N	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB2	HGNC	ENSG00000196576				17	0	0	18	11	37.931
C3orf22	0	genome.wustl.edu	37	3	126272213	126272213	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	3	126272213	126272213	C	G	SNP	C3orf22	ENST00000318225	human	ensembl	74_37	-1	known	missense	c.21	p.K7N	0.002	NULL	NULL	-	no_errors	C3orf22	HGNC	ENSG00000180697				256	0	0	144	111	43.5294
EHHADH	0	genome.wustl.edu	37	3	184911202	184911202	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	3	184911202	184911202	C	T	SNP	EHHADH	ENST00000231887	human	ensembl	74_37	-1	known	silent	c.984	p.S328	0.947	pfam_3-OHacyl-CoA_DH_NAD-bd	pfam_Crotonase_core_superfam,pfam_3-OHacyl-CoA_DH_NAD-bd,pfam_3HC_DH_C,superfamily_6-PGluconate_DH_C-like	-	no_errors	EHHADH	HGNC	ENSG00000113790				105	0	0	109	28	20.438
LOC220729	0	genome.wustl.edu	37	3	197348634	197348634	+	RNA	SNP	G	G	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	3	197348634	197348634	G	C	SNP	LOC220729	ENST00000414207	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AC024560.3	Clone_based_vega_gene	ENSG00000214135				72	0	0	101	6	5.60748
CADM2	0	genome.wustl.edu	37	3	85775696	85775696	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	3	85775696	85775696	A	C	SNP	CADM2	ENST00000405615	human	ensembl	74_37	+1	known	missense	c.65	p.K22T	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM2	HGNC	ENSG00000175161				81	0	0	81	28	25.6881
COL8A1	0	genome.wustl.edu	37	3	99513454	99513454	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	3	99513454	99513454	C	T	SNP	COL8A1	ENST00000261037	human	ensembl	74_37	+1	known	missense	c.709	p.R237W	0.998	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810				92	0	0	68	18	20.9302
CCKAR	0	genome.wustl.edu	37	4	26483541	26483541	+	Silent	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	4	26483541	26483541	G	T	SNP	CCKAR	ENST00000295589	human	ensembl	74_37	-1	known	silent	c.1006	p.R336	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcskin_rcpt	pfam_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394				63	0	0	52	11	17.4603
LPHN3	0	genome.wustl.edu	37	4	62845476	62845476	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	4	62845476	62845476	C	T	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	nonsense	c.3001	p.R1001*	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471				96	0	0	86	16	15.6863
YTHDC1	0	genome.wustl.edu	37	4	69202911	69202911	+	Silent	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	4	69202911	69202911	T	C	SNP	YTHDC1	ENST00000344157	human	ensembl	74_37	-1	known	silent	c.717	p.E239	0.603	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC	ENSG00000083896				20	0	0	42	4	8.69565
C5orf20	0	genome.wustl.edu	37	5	134782298	134782298	+	Silent	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	134782298	134782298	G	A	SNP	C5orf20	ENST00000503143	human	ensembl	74_37	-1	known	silent	c.501	p.S167	0.000	NULL	NULL	-	no_errors	C5orf20	HGNC	ENSG00000251380				85	0	0	61	19	23.75
DNAH5	0	genome.wustl.edu	37	5	13753603	13753603	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	13753603	13753603	C	A	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.10611	p.E3537D	0.998	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				118	0	0	126	20	13.6986
DNAH5	0	genome.wustl.edu	37	5	13844951	13844951	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	13844951	13844951	C	T	SNP	DNAH5	ENST00000265104	human	ensembl	74_37	-1	known	missense	c.5266	p.E1756K	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH5	HGNC	ENSG00000039139				219	0	0	175	21	10.7143
PCDHA6	0	genome.wustl.edu	37	5	140207815	140207815	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	140207815	140207815	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.139	p.R47W	0.954	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				78	0	0	76	15	16.4835
PCDHB10	0	genome.wustl.edu	37	5	140573466	140573466	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	140573466	140573466	C	T	SNP	PCDHB10	ENST00000239446	human	ensembl	74_37	+1	known	silent	c.1341	p.N447	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB10	HGNC	ENSG00000120324				143	0	0	97	28	22.4
PCDHB14	0	genome.wustl.edu	37	5	140604275	140604275	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	140604275	140604275	T	A	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.1198	p.F400I	0.812	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327				107	0	0	102	21	17.0732
STK32A	0	genome.wustl.edu	37	5	146752830	146752830	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	146752830	146752830	G	C	SNP	STK32A	ENST00000397936	human	ensembl	74_37	+1	known	missense	c.876	p.K292N	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK32A	HGNC	ENSG00000169302				46	0	0	62	8	11.4286
CDH10	0	genome.wustl.edu	37	5	24509821	24509821	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	24509821	24509821	T	C	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.1110	p.I370M	0.998	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731				37	0	0	64	5	7.24638
CDH6	0	genome.wustl.edu	37	5	31318074	31318074	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	5	31318074	31318074	G	A	SNP	CDH6	ENST00000514738	human	ensembl	74_37	+1	putative	missense	c.1760	p.G587D	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361				74	0	0	50	78	60.9375
LAMA4	0	genome.wustl.edu	37	6	112499358	112499358	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	6	112499358	112499358	A	G	SNP	LAMA4	ENST00000230538	human	ensembl	74_37	-1	known	missense	c.1154	p.V385A	0.647	pfam_Laminin_I	pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_II,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Focal_adhesion_kin_target_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Laminin_G	-	no_errors	LAMA4	HGNC	ENSG00000112769				70	0	0	44	10	18.5185
BAI3	0	genome.wustl.edu	37	6	70070788	70070788	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	6	70070788	70070788	G	A	SNP	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	missense	c.3623	p.R1208Q	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298				89	0	0	92	8	8
COL12A1	0	genome.wustl.edu	37	6	75828817	75828817	+	Silent	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	6	75828817	75828817	G	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	silent	c.7296	p.V2432	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799				94	0	0	48	9	15.7895
MOGAT3	0	genome.wustl.edu	37	7	100842085	100842085	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	100842085	100842085	C	T	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	silent	c.315	p.P105	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384				102	0	0	113	14	11.0236
TMEM140	0	genome.wustl.edu	37	7	134849342	134849342	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	134849342	134849342	A	G	SNP	TMEM140	ENST00000275767	human	ensembl	74_37	+1	known	missense	c.149	p.Y50C	1.000	NULL	NULL	-	no_errors	TMEM140	HGNC	ENSG00000146859				94	0	0	99	19	16.1017
CNTNAP2	0	genome.wustl.edu	37	7	147092772	147092772	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	147092772	147092772	A	C	SNP	CNTNAP2	ENST00000361727	human	ensembl	74_37	+1	known	missense	c.1570	p.I524L	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP2	HGNC	ENSG00000174469				166	0	0	182	39	17.6471
CUL1	0	genome.wustl.edu	37	7	148451148	148451148	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	148451148	148451148	A	G	SNP	CUL1	ENST00000325222	human	ensembl	74_37	+1	known	missense	c.221	p.K74R	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL1	HGNC	ENSG00000055130				36	0	0	28	2	6.66667
WBSCR17	0	genome.wustl.edu	37	7	70800611	70800611	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	70800611	70800611	C	T	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	missense	c.314	p.P105L	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				55	0	0	50	13	20.6349
AP4M1	0	genome.wustl.edu	37	7	99699356	99699356	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	7	99699356	99699356	A	G	SNP	AP4M1	ENST00000359593	human	ensembl	74_37	+1	known	missense	c.19	p.I7V	1.000	superfamily_Longin-like_dom,pirsf_Clathrin_mu	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pirsf_Clathrin_mu,prints_Clathrin_mu,pfscan_Clathrin_mu_C	-	no_errors	AP4M1	HGNC	ENSG00000221838				56	0	0	51	17	25
PRKDC	0	genome.wustl.edu	37	8	48739274	48739274	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	8	48739274	48739274	C	G	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	missense	c.8723	p.R2908P	0.809	pfscan_PIK_FAT	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				28	0	0	25	2	7.40741
PXDNL	0	genome.wustl.edu	37	8	52721826	52721826	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	8	52721826	52721826	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.79	p.R27W	0.985	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485				9	0	0	12	3	20
CHD7	0	genome.wustl.edu	37	8	61757606	61757606	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	8	61757606	61757606	C	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	silent	c.5034	p.A1678	0.998	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316				167	0	0	191	38	16.5939
TTPA	0	genome.wustl.edu	37	8	63973833	63973833	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	8	63973833	63973833	C	A	SNP	TTPA	ENST00000260116	human	ensembl	74_37	-1	known	missense	c.815	p.S272I	1.000	superfamily_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,prints_CRAL-bd_toc_tran	-	no_errors	TTPA	HGNC	ENSG00000137561				52	0	0	58	10	14.7059
VCPIP1	0	genome.wustl.edu	37	8	67578740	67578740	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	8	67578740	67578740	T	A	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.454	p.M152L	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				125	0	0	100	21	17.3554
COL15A1	0	genome.wustl.edu	37	9	101824554	101824554	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	101824554	101824554	G	A	SNP	COL15A1	ENST00000375001	human	ensembl	74_37	+1	known	missense	c.3559	p.D1187N	0.948	pfam_Collagenase_NC10/endostatin	pfam_Collagenase_NC10/endostatin,pfam_Collagen,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	-	no_errors	COL15A1	HGNC	ENSG00000204291				93	0	0	89	14	13.5922
HSDL2	0	genome.wustl.edu	37	9	115221775	115221775	+	Silent	SNP	G	G	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	115221775	115221775	G	T	SNP	HSDL2	ENST00000262542	human	ensembl	74_37	+1	known	silent	c.702	p.G234	0.843	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	pfam_SCP2_sterol-bd_dom,superfamily_SCP2_sterol-bd_dom	-	no_errors	HSDL2	HGNC	ENSG00000119471				131	0	0	123	24	16.3265
UBAC1	0	genome.wustl.edu	37	9	138838155	138838155	+	Silent	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	138838155	138838155	C	T	SNP	UBAC1	ENST00000371756	human	ensembl	74_37	-1	known	silent	c.504	p.A168	0.330	superfamily_UBA-like	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_STI1_HS-bd,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	UBAC1	HGNC	ENSG00000130560				83	0	0	85	19	18.2692
LINGO2	0	genome.wustl.edu	37	9	27949433	27949433	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	27949433	27949433	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	74_37	-1	known	missense	c.1237	p.R413C	1.000	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LINGO2	HGNC	ENSG00000174482				78	0	0	60	15	20
CDK20	0	genome.wustl.edu	37	9	90584120	90584120	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	90584120	90584120	C	T	SNP	CDK20	ENST00000325303	human	ensembl	74_37	-1	known	missense	c.832	p.A278T	0.001	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK20	HGNC	ENSG00000156345				220	0	0	178	41	18.7215
WNK2	0	genome.wustl.edu	37	9	96061535	96061535	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	96061535	96061535	G	A	SNP	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	missense	c.6218	p.R2073H	0.807	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				52	0	0	47	5	9.61538
MAP3K15	0	genome.wustl.edu	37	X	19390935	19390935	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	X	19390935	19390935	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	missense	c.2944	p.E982K	0.983	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815				42	0	0	43	15	25.8621
HDAC6	0	genome.wustl.edu	37	X	48666708	48666708	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	X	48666708	48666708	C	T	SNP	HDAC6	ENST00000444343	human	ensembl	74_37	+1	known	nonsense	c.823	p.Q275*	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,prints_His_deacetylse	-	no_errors	HDAC6	HGNC	ENSG00000094631				15	0	0	19	2	9.52381
DIAPH2	0	genome.wustl.edu	37	X	96136668	96136668	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	X	96136668	96136668	C	A	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	missense	c.538	p.L180I	1.000	pfam_GTPase-bd,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202				48	0	0	45	5	10
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				24	0	0	23	5	17.8571
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037883	10037883	+	RNA	SNP	G	G	A			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	Y	10037883	10037883	G	A	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705				22	0	0	22	5	18.5185
AGRN	0	genome.wustl.edu	37	1	970694	970711	+	Frame_Shift_Del	DEL	GCCTCCTGATGGTGAGTA	GCCTCCTGATGGTGAGTA	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	GCCTCCTGATGGTGAGTA	GCCTCCTGATGGTGAGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	1	970694	970711	GCCTCCTGATGGTGAGTA	-	DEL	AGRN	ENST00000379370	human	ensembl	74_37	+1	known	frame_shift_del	c.501_511	p.P168fs	0.001:0.928:0.947:0.936:0.931:0.895:0.885:0.998:0.999:0.998:1.000	NULL	pfam_Laminin_G,pfam_Agrin_NtA,pfam_Kazal_dom,pfam_EGF_laminin,pfam_SEA_dom,pfam_EG-like_dom,superfamily_TIMP-like_OB-fold,superfamily_ConA-like_lec_gl_sf,smart_FacI_MAC,smart_Fol_N,smart_Kazal_dom,smart_EG-like_dom,smart_EGF_laminin,smart_SEA_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Agrin_NtA,pfscan_SEA_dom	-	no_errors	AGRN	HGNC	ENSG00000188157				192	0	0	168	10	5.61798
MYL6	0	genome.wustl.edu	37	12	56554409	56554419	+	Frame_Shift_Del	DEL	GCGTTTGTGAG	GCGTTTGTGAG	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	GCGTTTGTGAG	GCGTTTGTGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	12	56554409	56554419	GCGTTTGTGAG	-	DEL	MYL6	ENST00000548293	human	ensembl	74_37	+1	known	frame_shift_del	c.429_437	p.F144fs	1.000:1.000:0.847:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL6	HGNC	ENSG00000092841				260	0	0	193	14	6.76329
SALL1	0	genome.wustl.edu	37	16	51174686	51174696	+	Frame_Shift_Del	DEL	CGCAGATGTTG	CGCAGATGTTG	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	CGCAGATGTTG	CGCAGATGTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	16	51174686	51174696	CGCAGATGTTG	-	DEL	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	frame_shift_del	c.1447_1437	p.C479fs	1.000:0.960:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449				91	0	0	95	6	5.94059
USP36	0	genome.wustl.edu	37	17	76795809	76795809	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	17	76795809	76795809	C	-	DEL	USP36	ENST00000312010	human	ensembl	74_37	-1	known	frame_shift_del	c.3064	p.E1022fs	0.001	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP36	HGNC	ENSG00000055483				161	0	0	135	15	10
FAM129C	0	genome.wustl.edu	37	19	17644504	17644517	+	Frame_Shift_Del	DEL	TCCTTGGGTAAGGG	TCCTTGGGTAAGGG	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	TCCTTGGGTAAGGG	TCCTTGGGTAAGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	19	17644504	17644517	TCCTTGGGTAAGGG	-	DEL	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	frame_shift_del	c.514_520	p.S172fs	0.000:0.023:0.033:0.028:0.054:0.064:0.399	smart_Pleckstrin_homology	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				47	0	0	54	10	15.625
LOC101928663	0	genome.wustl.edu	37	6	25261542	25261542	+	RNA	DEL	C	C	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	6	25261542	25261542	C	-	DEL	LOC101928663	ENST00000413898	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP3-522P13.3	Clone_based_vega_gene	ENSG00000235733				48	0	0	14	10	41.6667
ANAPC2	0	genome.wustl.edu	37	9	140069365	140069368	+	RNA	DEL	GGCG	GGCG	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	GGCG	GGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	9	140069365	140069368	GGCG	-	DEL	ANAPC2	ENST00000487917	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	ANAPC2	HGNC	ENSG00000176248				8	0	0	3	3	50
PIGA	0	genome.wustl.edu	37	X	15342927	15342956	+	In_Frame_Del	DEL	GCTCACATAAAATAATAAGGTTTTCTGGAA	GCTCACATAAAATAATAAGGTTTTCTGGAA	-			TCGA-CD-5804-01A-12D-2053-08	TCGA-CD-5804-10A-01D-2053-08	GCTCACATAAAATAATAAGGTTTTCTGGAA	GCTCACATAAAATAATAAGGTTTTCTGGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	36609c37-a039-4fb8-97cc-d492e92f3b05	cd0ff572-f125-478b-b186-f3cb523f39be	X	15342927	15342956	GCTCACATAAAATAATAAGGTTTTCTGGAA	-	DEL	PIGA	ENST00000333590	human	ensembl	74_37	-1	known	in_frame_del	c.1048_1019	p.LPENLIILCE340in_frame_del	1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.993:1.000:0.993:0.999:1.000:1.000:0.965:1.000:1.000:0.995:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:0.974:1.000:1.000:0.971:0.986	pfam_Glyco_trans_1	pfam_PIGA_GPI_anchor_biosynthesis,pfam_Glyco_trans_1	-	no_errors	PIGA	HGNC	ENSG00000165195				23	0	0	15	8	34.7826
