Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
COL11A1	0	genome.wustl.edu	37	1	103488310	103488310	+	Silent	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	103488310	103488310	A	G	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.1269	p.I423	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718				109	0	0	41	9	18
MAN1A2	0	genome.wustl.edu	37	1	117963257	117963257	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	117963257	117963257	C	A	SNP	MAN1A2	ENST00000356554	human	ensembl	74_37	+1	known	missense	c.841	p.L281I	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A2	HGNC	ENSG00000198162				111	0	0	32	5	13.5135
HSD3B2	0	genome.wustl.edu	37	1	119964589	119964589	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	119964589	119964589	G	A	SNP	HSD3B2	ENST00000369416	human	ensembl	74_37	+1	known	silent	c.465	p.P155	0.705	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859				158	0	0	53	15	22.0588
ENSG00000227082	0	genome.wustl.edu	37	1	121139102	121139102	+	RNA	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	121139102	121139102	G	A	SNP	ENSG00000227082	ENST00000417218	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	AL592494.5	Clone_based_vega_gene	ENSG00000227082				19	0	0	2	3	60
PRAMEF12	0	genome.wustl.edu	37	1	12837182	12837182	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	12837182	12837182	G	A	SNP	PRAMEF12	ENST00000357726	human	ensembl	74_37	+1	known	missense	c.892	p.V298I	0.000	NULL	NULL	-	no_errors	PRAMEF12	HGNC	ENSG00000116726				283	0	0	79	26	24.7619
PRAMEF1	0	genome.wustl.edu	37	1	12855952	12855952	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	12855952	12855952	C	T	SNP	PRAMEF1	ENST00000332296	human	ensembl	74_37	+1	known	missense	c.1232	p.T411M	0.000	NULL	NULL	-	no_errors	PRAMEF1	HGNC	ENSG00000116721				497	0	0	171	11	6.04396
FMO5	0	genome.wustl.edu	37	1	146696558	146696558	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	146696558	146696558	A	G	SNP	FMO5	ENST00000254090	human	ensembl	74_37	-1	known	missense	c.64	p.C22R	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_5,prints_Flavin_mOase_2,prints_Flavin_mOase_1	-	no_errors	FMO5	HGNC	ENSG00000131781				179	0	0	79	14	15.0538
ADAMTSL4	0	genome.wustl.edu	37	1	150532570	150532570	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	150532570	150532570	C	T	SNP	ADAMTSL4	ENST00000369039	human	ensembl	74_37	+1	known	silent	c.3192	p.P1064	1.000	pfam_PLAC,pfscan_PLAC	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382				195	0	0	79	19	19.3878
FLG	0	genome.wustl.edu	37	1	152277422	152277422	+	Nonsense_Mutation	SNP	T	T	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	152277422	152277422	T	A	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	nonsense	c.9940	p.R3314*	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				898	1	0.111235	505	88	14.8398
FLG	0	genome.wustl.edu	37	1	152285533	152285533	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	152285533	152285533	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.1829	p.G610E	0.000	pfam_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				472	1	0.211416	204	145	41.5473
DEDD	0	genome.wustl.edu	37	1	161092952	161092952	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	161092952	161092952	G	A	SNP	DEDD	ENST00000368005	human	ensembl	74_37	-1	known	missense	c.493	p.R165W	1.000	NULL	pfam_DED,superfamily_DEATH-like_dom,smart_DED,pfscan_DED	-	no_errors	DEDD	HGNC	ENSG00000158796				150	1	0.662252	70	29	29.2929
ATP13A2	0	genome.wustl.edu	37	1	17323520	17323520	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	17323520	17323520	C	T	SNP	ATP13A2	ENST00000326735	human	ensembl	74_37	-1	known	missense	c.1190	p.R397H	0.757	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_Cation_typ_V,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Cation_typ_V,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP13A2	HGNC	ENSG00000159363				52	0	0	11	5	31.25
SLC9C2	0	genome.wustl.edu	37	1	173556830	173556830	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	173556830	173556830	C	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.497	p.R166H	0.021	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753				100	0	0	38	14	26.9231
SEC16B	0	genome.wustl.edu	37	1	177902725	177902725	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	177902725	177902725	C	T	SNP	SEC16B	ENST00000308284	human	ensembl	74_37	-1	known	missense	c.2618	p.S873N	0.000	NULL	NULL	-	no_errors	SEC16B	HGNC	ENSG00000120341				77	0	0	40	5	11.1111
LRRN2	0	genome.wustl.edu	37	1	204588700	204588700	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	204588700	204588700	C	G	SNP	LRRN2	ENST00000367175	human	ensembl	74_37	-1	known	missense	c.421	p.A141P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRN2	HGNC	ENSG00000170382				298	0	0	104	32	23.5294
CR1	0	genome.wustl.edu	37	1	207697156	207697156	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	207697156	207697156	C	T	SNP	CR1	ENST00000367049	human	ensembl	74_37	+1	known	missense	c.688	p.P230S	0.903	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR1	HGNC	ENSG00000203710				45	0	0	65	21	24.4186
CENPF	0	genome.wustl.edu	37	1	214819047	214819047	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	214819047	214819047	A	G	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.6134	p.Q2045R	0.000	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724				155	0	0	61	48	44.0367
HSPG2	0	genome.wustl.edu	37	1	22199882	22199882	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	22199882	22199882	C	G	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.3779	p.G1260A	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				341	0	0	73	37	33.6364
OBSCN	0	genome.wustl.edu	37	1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	228434292	228434292	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.3821	p.A1274G	0.014	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358				161	1	0.617284	45	28	38.3562
ZNF124	0	genome.wustl.edu	37	1	247320073	247320073	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	247320073	247320073	T	A	SNP	ZNF124	ENST00000543802	human	ensembl	74_37	-1	known	missense	c.851	p.H284L	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF124	HGNC	ENSG00000196418				106	0	0	79	26	24.7619
OR2T1	0	genome.wustl.edu	37	1	248569964	248569964	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	248569964	248569964	G	T	SNP	OR2T1	ENST00000366474	human	ensembl	74_37	+1	known	missense	c.669	p.E223D	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T1	HGNC	ENSG00000175143				104	0	0	55	31	36.0465
HMGN2	0	genome.wustl.edu	37	1	26801762	26801762	+	RNA	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	26801762	26801762	G	T	SNP	HMGN2	ENST00000460563	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGN2	HGNC	ENSG00000198830				14	0	0	5	8	61.5385
LRRC7	0	genome.wustl.edu	37	1	70504932	70504932	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	70504932	70504932	C	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	missense	c.3311	p.A1104E	0.950	NULL	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122				216	1	0.460829	64	28	30.4348
SLC45A1	0	genome.wustl.edu	37	1	8390936	8390936	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	8390936	8390936	C	T	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	silent	c.1485	p.D495	0.001	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				197	0	0	53	14	20.8955
CLCA4	0	genome.wustl.edu	37	1	87043587	87043587	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	87043587	87043587	G	T	SNP	CLCA4	ENST00000370563	human	ensembl	74_37	+1	known	missense	c.1954	p.A652S	1.000	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,superfamily_Fibronectin_type3,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA4	HGNC	ENSG00000016602				35	0	0	15	3	16.6667
CRTAC1	0	genome.wustl.edu	37	10	99625319	99625319	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	10	99625319	99625319	C	T	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.1972	p.E658K	0.000	NULL	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713				72	0	0	17	2	10.5263
OSBPL5	0	genome.wustl.edu	37	11	3115056	3115056	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	11	3115056	3115056	C	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	missense	c.1729	p.G577R	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762				41	0	0	9	7	43.75
OR4A47	0	genome.wustl.edu	37	11	48510483	48510483	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	11	48510483	48510483	G	A	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	missense	c.139	p.V47I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388				42	0	0	30	18	37.5
OR5M3	0	genome.wustl.edu	37	11	56237295	56237295	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	11	56237295	56237295	G	A	SNP	OR5M3	ENST00000312240	human	ensembl	74_37	-1	known	missense	c.679	p.R227C	0.044	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5M3	HGNC	ENSG00000174937				118	0	0	23	21	47.7273
DNAH10	0	genome.wustl.edu	37	12	124416550	124416550	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	124416550	124416550	C	T	SNP	DNAH10	ENST00000409039	human	ensembl	74_37	+1	known	silent	c.12837	p.I4279	0.022	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_PyrdxlP-dep_Trfase,smart_AAA+_ATPase	-	no_errors	DNAH10	HGNC	ENSG00000197653				115	0	0	39	22	36.0656
ABCC9	0	genome.wustl.edu	37	12	22001093	22001093	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	22001093	22001093	C	T	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2857	p.E953K	1.000	superfamily_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				89	0	0	27	4	12.9032
CACNA1C	0	genome.wustl.edu	37	12	2788847	2788847	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	2788847	2788847	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	74_37	+1	known	missense	c.5329	p.R1777C	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067				49	0	0	6	5	45.4545
C12orf40	0	genome.wustl.edu	37	12	40114807	40114807	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	40114807	40114807	C	T	SNP	C12orf40	ENST00000324616	human	ensembl	74_37	+1	known	silent	c.1713	p.C571	0.015	NULL	NULL	-	no_errors	C12orf40	HGNC	ENSG00000180116				108	0	0	39	20	33.8983
CNTN1	0	genome.wustl.edu	37	12	41387064	41387064	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	41387064	41387064	C	T	SNP	CNTN1	ENST00000347616	human	ensembl	74_37	+1	known	silent	c.2106	p.D702	0.985	superfamily_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN1	HGNC	ENSG00000018236				53	0	0	27	6	18.1818
VWF	0	genome.wustl.edu	37	12	6143984	6143984	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	6143984	6143984	T	C	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.2555	p.Q852R	0.997	pirsf_VWF,smart_VWC_out,smart_VWF_C	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799				53	0	0	21	4	16
SRGAP1	0	genome.wustl.edu	37	12	64521659	64521659	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	64521659	64521659	G	A	SNP	SRGAP1	ENST00000355086	human	ensembl	74_37	+1	known	silent	c.2559	p.E853	0.909	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_FCH_dom,pfam_SH3_domain,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Fuc/Ara_isomerase_C,smart_FCH_dom,smart_RhoGAP_dom,smart_SH3_domain,pfscan_FCH_dom,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	SRGAP1	HGNC	ENSG00000196935				161	0	0	60	16	21.0526
ACRBP	0	genome.wustl.edu	37	12	6748124	6748124	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	6748124	6748124	C	T	SNP	ACRBP	ENST00000229243	human	ensembl	74_37	-1	known	missense	c.1505	p.R502Q	0.081	NULL	pfam_Proacrosin-bd	-	no_errors	ACRBP	HGNC	ENSG00000111644				182	0	0	45	10	18.1818
CDCA3	0	genome.wustl.edu	37	12	6958779	6958779	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	6958779	6958779	C	G	SNP	CDCA3	ENST00000538862	human	ensembl	74_37	-1	known	missense	c.494	p.S165T	1.000	NULL	NULL	-	no_errors	CDCA3	HGNC	ENSG00000111665				238	0	0	56	29	34.1176
TMTC2	0	genome.wustl.edu	37	12	83251144	83251144	+	Missense_Mutation	SNP	T	T	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	12	83251144	83251144	T	G	SNP	TMTC2	ENST00000321196	human	ensembl	74_37	+1	known	missense	c.439	p.F147V	1.000	NULL	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_TPR-4,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC2	HGNC	ENSG00000179104				89	0	0	58	13	18.3099
TUBGCP3	0	genome.wustl.edu	37	13	113212621	113212621	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	13	113212621	113212621	C	T	SNP	TUBGCP3	ENST00000261965	human	ensembl	74_37	-1	known	missense	c.437	p.R146Q	0.997	NULL	pfam_TUBGCP	-	no_errors	TUBGCP3	HGNC	ENSG00000126216				92	0	0	16	7	30.4348
NUPL1	0	genome.wustl.edu	37	13	25883397	25883397	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	13	25883397	25883397	C	T	SNP	NUPL1	ENST00000381736	human	ensembl	74_37	+1	known	missense	c.263	p.T88I	1.000	NULL	NULL	-	no_errors	NUPL1	HGNC	ENSG00000139496				52	0	0	11	10	47.619
IPO5	0	genome.wustl.edu	37	13	98652834	98652834	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	13	98652834	98652834	G	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.1097	p.C366F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150				133	0	0	23	23	50
MIR380	0	genome.wustl.edu	37	14	101491392	101491392	+	RNA	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	14	101491392	101491392	G	A	SNP	MIR380	ENST00000362112	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	MIR380	HGNC	ENSG00000198982				23	0	0	14	6	30
PLD4	0	genome.wustl.edu	37	14	105398406	105398406	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	14	105398406	105398406	C	T	SNP	PLD4	ENST00000392593	human	ensembl	74_37	+1	known	silent	c.1116	p.R372	0.000	NULL	pfam_PLipase_D/transphosphatidylase,smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD4	HGNC	ENSG00000166428				26	0	0	7	4	36.3636
MED15P1	0	genome.wustl.edu	37	14	19502086	19502086	+	RNA	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	14	19502086	19502086	C	T	SNP	MED15P1	ENST00000552968	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991	-	-	-	no_errors	MED15P1	HGNC	ENSG00000257853				15	0	0	3	2	40
MAPK1IP1L	0	genome.wustl.edu	37	14	55529793	55529793	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	14	55529793	55529793	G	A	SNP	MAPK1IP1L	ENST00000395468	human	ensembl	74_37	+1	known	missense	c.476	p.G159E	1.000	NULL	NULL	-	no_errors	MAPK1IP1L	HGNC	ENSG00000168175				89	0	0	39	14	26.4151
ENSG00000256357	0	genome.wustl.edu	37	14	94930899	94930899	+	RNA	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	14	94930899	94930899	C	T	SNP	ENSG00000256357	ENST00000536735	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	RP11-349I1.2	Clone_based_vega_gene	ENSG00000256357				8	0	0	5	5	50
SNHG14	0	genome.wustl.edu	37	15	25463997	25463997	+	RNA	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	15	25463997	25463997	G	T	SNP	SNHG14	ENST00000453082	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SNHG14	HGNC	ENSG00000224078				49	0	0	35	8	18.6047
ATP10A	0	genome.wustl.edu	37	15	25928567	25928567	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	15	25928567	25928567	G	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	missense	c.3358	p.Q1120K	1.000	tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190				70	0	0	28	10	26.3158
CSPG4	0	genome.wustl.edu	37	15	75968312	75968312	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	15	75968312	75968312	C	T	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.6548	p.R2183Q	0.001	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546				46	0	0	6	17	73.913
HBQ1	0	genome.wustl.edu	37	16	231013	231013	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	16	231013	231013	G	A	SNP	HBQ1	ENST00000199708	human	ensembl	74_37	+1	known	missense	c.335	p.R112Q	0.001	superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_pi	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_a,prints_Haemoglobin_pi	-	no_errors	HBQ1	HGNC	ENSG00000086506				62	0	0	19	8	29.6296
KAT8	0	genome.wustl.edu	37	16	31131779	31131779	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	16	31131779	31131779	C	T	SNP	KAT8	ENST00000448516	human	ensembl	74_37	+1	known	missense	c.406	p.R136C	1.000	superfamily_Chromodomain-like	pfam_MOZ_SAS,pfam_Tudor-knot,superfamily_Acyl_CoA_acyltransferase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	KAT8	HGNC	ENSG00000103510				110	0	0	40	10	20
ABCC11	0	genome.wustl.edu	37	16	48247385	48247385	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	16	48247385	48247385	G	A	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.1325	p.T442M	0.002	superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				63	0	0	23	5	17.8571
KLHDC4	0	genome.wustl.edu	37	16	87790012	87790012	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	16	87790012	87790012	C	T	SNP	KLHDC4	ENST00000270583	human	ensembl	74_37	-1	known	missense	c.263	p.G88D	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	KLHDC4	HGNC	ENSG00000104731				88	0	0	29	3	9.375
TUBB8P7	0	genome.wustl.edu	37	16	90162651	90162651	+	RNA	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	16	90162651	90162651	C	T	SNP	TUBB8P7	ENST00000564451	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	TUBB8P7	HGNC	ENSG00000261812				245	0	0	80	37	31.6239
ULK2	0	genome.wustl.edu	37	17	19689396	19689396	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	19689396	19689396	G	A	SNP	ULK2	ENST00000361658	human	ensembl	74_37	-1	known	missense	c.2105	p.P702L	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290				63	0	0	8	12	60
USP32P3	0	genome.wustl.edu	37	17	20319867	20319867	+	RNA	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	20319867	20319867	A	G	SNP	USP32P3	ENST00000583574	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP32P3	HGNC	ENSG00000189423				91	0	0	28	11	28.2051
TAOK1	0	genome.wustl.edu	37	17	27844528	27844528	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	27844528	27844528	C	T	SNP	TAOK1	ENST00000261716	human	ensembl	74_37	+1	known	nonsense	c.1762	p.Q588*	1.000	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551				349	0	0	29	28	49.1228
ADAP2	0	genome.wustl.edu	37	17	29281526	29281526	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	29281526	29281526	G	T	SNP	ADAP2	ENST00000330889	human	ensembl	74_37	+1	known	missense	c.835	p.A279S	0.979	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_Pleckstrin_homology,smart_ArfGAP,smart_Pleckstrin_homology,prints_ArfGAP,pfscan_Pleckstrin_homology,pfscan_ArfGAP	-	no_errors	ADAP2	HGNC	ENSG00000184060				374	0	0	41	55	57.2917
XYLT2	0	genome.wustl.edu	37	17	48433958	48433958	+	Silent	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	48433958	48433958	T	C	SNP	XYLT2	ENST00000017003	human	ensembl	74_37	+1	known	silent	c.1569	p.Y523	0.998	pfam_XylT	pfam_XylT,pfam_Glyco_trans_14	-	no_errors	XYLT2	HGNC	ENSG00000015532				156	0	0	35	4	10.2564
SPATA20	0	genome.wustl.edu	37	17	48628511	48628511	+	Silent	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	48628511	48628511	C	A	SNP	SPATA20	ENST00000006658	human	ensembl	74_37	+1	known	silent	c.1536	p.P512	0.001	superfamily_6-hairpin_glycosidase-like	pfam_DUF255,pfam_AGE/RnBP,superfamily_6-hairpin_glycosidase-like,superfamily_Thioredoxin-like_fold	-	no_errors	SPATA20	HGNC	ENSG00000006282				50	0	0	7	5	41.6667
MED13	0	genome.wustl.edu	37	17	60061595	60061595	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	60061595	60061595	C	G	SNP	MED13	ENST00000397786	human	ensembl	74_37	-1	known	missense	c.2825	p.S942T	1.000	NULL	pfam_Mediator_Med13,pfam_Mediator_Med13_N_met/fun	-	no_errors	MED13	HGNC	ENSG00000108510				147	0	0	36	9	20
NEURL4	0	genome.wustl.edu	37	17	7231011	7231011	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	7231011	7231011	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.475	p.V159M	1.000	superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041				240	1	0.414938	44	4	8.33333
TP53	0	genome.wustl.edu	37	17	7578479	7578479	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	7578479	7578479	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.451	p.P151T	0.999	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				79	0	0	6	13	68.4211
SYNGR2	0	genome.wustl.edu	37	17	76168001	76168001	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	76168001	76168001	C	T	SNP	SYNGR2	ENST00000225777	human	ensembl	74_37	+1	known	missense	c.659	p.P220L	1.000	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR2	HGNC	ENSG00000108639				218	0	0	25	29	53.7037
DLGAP1	0	genome.wustl.edu	37	18	3879957	3879957	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	18	3879957	3879957	C	A	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	nonsense	c.112	p.E38*	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579				119	1	0.833333	26	9	25.7143
DSEL	0	genome.wustl.edu	37	18	65181679	65181679	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	18	65181679	65181679	A	G	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.197	p.L66P	0.995	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				112	0	0	34	14	29.1667
NFATC1	0	genome.wustl.edu	37	18	77171139	77171139	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	18	77171139	77171139	C	T	SNP	NFATC1	ENST00000427363	human	ensembl	74_37	+1	known	silent	c.864	p.H288	0.005	NULL	pfam_RHD,pfam_IPT,superfamily_p53-like_TF_DNA-bd,superfamily_Ig_E-set,smart_IPT,pfscan_RHD,prints_NFAT	-	no_errors	NFATC1	HGNC	ENSG00000131196				107	0	0	24	7	22.5806
HMHA1	0	genome.wustl.edu	37	19	1079752	1079752	+	Silent	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	1079752	1079752	G	T	SNP	HMHA1	ENST00000313093	human	ensembl	74_37	+1	known	silent	c.1425	p.T475	0.806	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC	ENSG00000180448				134	0	0	23	18	43.9024
CLEC17A	0	genome.wustl.edu	37	19	14705596	14705596	+	Silent	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	14705596	14705596	T	C	SNP	CLEC17A	ENST00000417570	human	ensembl	74_37	+1	known	silent	c.387	p.C129	0.000	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC17A	HGNC	ENSG00000187912				55	0	0	12	4	25
NWD1	0	genome.wustl.edu	37	19	16860087	16860087	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	16860087	16860087	G	C	SNP	NWD1	ENST00000379808	human	ensembl	74_37	+1	known	missense	c.634	p.A212P	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NWD1	HGNC	ENSG00000188039				202	1	0.492611	38	12	24
FAM129C	0	genome.wustl.edu	37	19	17662662	17662662	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	17662662	17662662	C	G	SNP	FAM129C	ENST00000332386	human	ensembl	74_37	+1	known	missense	c.1911	p.I637M	0.029	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483				86	0	0	11	5	31.25
ZNF568	0	genome.wustl.edu	37	19	37488168	37488168	+	Silent	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	37488168	37488168	T	C	SNP	ZNF568	ENST00000455427	human	ensembl	74_37	+1	known	silent	c.1383	p.H461	0.999	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453				41	0	0	11	11	50
PRX	0	genome.wustl.edu	37	19	40900427	40900427	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	40900427	40900427	C	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.3832	p.D1278N	0.016	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227				20	0	0	8	7	46.6667
CYP2A13	0	genome.wustl.edu	37	19	41600977	41600977	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	41600977	41600977	G	C	SNP	CYP2A13	ENST00000330436	human	ensembl	74_37	+1	known	missense	c.1275	p.K425N	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP2A13	HGNC	ENSG00000197838				298	0	0	69	33	32.3529
CIC	0	genome.wustl.edu	37	19	42795827	42795827	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	42795827	42795827	G	C	SNP	CIC	ENST00000575354	human	ensembl	74_37	+1	known	missense	c.2816	p.G939A	0.998	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	CIC	HGNC	ENSG00000079432				251	0	0	38	20	34.4828
FEM1A	0	genome.wustl.edu	37	19	4793724	4793724	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	4793724	4793724	C	A	SNP	FEM1A	ENST00000269856	human	ensembl	74_37	+1	known	missense	c.1858	p.L620M	1.000	superfamily_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	FEM1A	HGNC	ENSG00000141965				92	0	0	20	4	16.6667
SLC6A16	0	genome.wustl.edu	37	19	49793509	49793509	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	49793509	49793509	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	silent	c.2082	p.D694	0.000	NULL	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				264	0	0	68	16	19.0476
SHANK1	0	genome.wustl.edu	37	19	51171798	51171798	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	51171798	51171798	G	A	SNP	SHANK1	ENST00000391814	human	ensembl	74_37	-1	known	missense	c.3443	p.P1148L	0.274	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SH3_2,pfam_SAM_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SH3_domain,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK1	HGNC	ENSG00000161681				31	0	0	6	3	33.3333
LILRA5	0	genome.wustl.edu	37	19	54823401	54823401	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	54823401	54823401	T	C	SNP	LILRA5	ENST00000301219	human	ensembl	74_37	-1	known	missense	c.142	p.T48A	0.083	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	LILRA5	HGNC	ENSG00000187116				148	0	0	38	7	15.5556
ZNF446	0	genome.wustl.edu	37	19	58991711	58991711	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	58991711	58991711	C	T	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.971	p.P324L	0.010	NULL	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838				21	0	0	8	2	20
ELANE	0	genome.wustl.edu	37	19	853309	853309	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	19	853309	853309	G	A	SNP	ELANE	ENST00000263621	human	ensembl	74_37	+1	known	missense	c.272	p.R91Q	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	ELANE	HGNC	ENSG00000197561				59	0	0	12	4	25
TPO	0	genome.wustl.edu	37	2	1507810	1507810	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	1507810	1507810	C	T	SNP	TPO	ENST00000329066	human	ensembl	74_37	+1	known	missense	c.2477	p.A826V	0.083	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Haem_peroxidase_animal,pfam_EGF-like_Ca-bd_dom,superfamily_Haem_peroxidase,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Sushi_SCR_CCP,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	TPO	HGNC	ENSG00000115705				93	0	0	39	9	18.75
TTN	0	genome.wustl.edu	37	2	179417913	179417913	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	179417913	179417913	T	C	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.82010	p.N27337S	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				149	0	0	75	6	7.40741
SLC40A1	0	genome.wustl.edu	37	2	190445194	190445194	+	RNA	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	190445194	190445194	G	C	SNP	SLC40A1	ENST00000418714	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.208	-	-	-	no_errors	SLC40A1	HGNC	ENSG00000138449				92	0	0	35	6	14.6341
CRYGD	0	genome.wustl.edu	37	2	208988895	208988895	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	208988895	208988895	C	T	SNP	CRYGD	ENST00000264376	human	ensembl	74_37	-1	known	missense	c.193	p.D65N	0.999	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGD	HGNC	ENSG00000118231				65	0	0	11	6	35.2941
SCG2	0	genome.wustl.edu	37	2	224463718	224463718	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	224463718	224463718	C	T	SNP	SCG2	ENST00000305409	human	ensembl	74_37	-1	known	missense	c.283	p.D95N	0.934	pfam_Granin	pfam_Granin	-	no_errors	SCG2	HGNC	ENSG00000171951				154	0	0	79	17	17.7083
C2orf44	0	genome.wustl.edu	37	2	24261172	24261172	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	24261172	24261172	A	C	SNP	C2orf44	ENST00000295148	human	ensembl	74_37	-1	known	missense	c.1193	p.L398R	0.993	NULL	NULL	-	no_errors	C2orf44	HGNC	ENSG00000163026				166	0	0	46	43	48.3146
NCOA1	0	genome.wustl.edu	37	2	24964833	24964833	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	24964833	24964833	G	A	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.3484	p.G1162S	1.000	pfam_DUF1518,pirsf_Nuclear_rcpt_coactivator	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676				116	0	0	48	25	34.2466
DRC1	0	genome.wustl.edu	37	2	26677608	26677608	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	2	26677608	26677608	C	T	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	silent	c.2013	p.S671	0.000	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856				151	0	0	33	24	42.1053
JAG1	0	genome.wustl.edu	37	20	10639259	10639259	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	10639259	10639259	C	T	SNP	JAG1	ENST00000254958	human	ensembl	74_37	-1	known	missense	c.551	p.R184H	1.000	pfam_DSL,smart_DSL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom	-	no_errors	JAG1	HGNC	ENSG00000101384				162	1	0.613497	50	25	33.3333
SSTR4	0	genome.wustl.edu	37	20	23016919	23016919	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	23016919	23016919	G	A	SNP	SSTR4	ENST00000255008	human	ensembl	74_37	+1	known	missense	c.799	p.V267I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Somatstn_rcpt_4,prints_GPCR_Rhodpsn,prints_Somatstn_rcpt,prints_Opioid_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt,prints_Somatstn_rcpt_1	-	no_errors	SSTR4	HGNC	ENSG00000132671				138	0	0	49	20	28.9855
SEMG2	0	genome.wustl.edu	37	20	43850987	43850987	+	Silent	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	43850987	43850987	C	A	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	silent	c.714	p.L238	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				245	0	0	103	17	14.1667
ARFGEF2	0	genome.wustl.edu	37	20	47639687	47639687	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	47639687	47639687	A	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	74_37	+1	known	missense	c.4724	p.K1575T	1.000	superfamily_ARM-type_fold	pfam_Sec7_dom,pfam_DUF1981_Sec7_assoc,superfamily_Sec7_dom,superfamily_ARM-type_fold,smart_Sec7_dom,pfscan_Sec7_dom	-	no_errors	ARFGEF2	HGNC	ENSG00000124198				92	0	0	38	20	34.4828
CBLN4	0	genome.wustl.edu	37	20	54579014	54579014	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	54579014	54579014	C	T	SNP	CBLN4	ENST00000064571	human	ensembl	74_37	-1	known	missense	c.214	p.A72T	1.000	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN4	HGNC	ENSG00000054803				233	0	0	80	24	23.0769
ZNF831	0	genome.wustl.edu	37	20	57766931	57766931	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	57766931	57766931	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	74_37	+1	novel	missense	c.857	p.A286V	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203				161	1	0.617284	53	14	20.8955
MCM8	0	genome.wustl.edu	37	20	5948171	5948171	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	5948171	5948171	G	A	SNP	MCM8	ENST00000378886	human	ensembl	74_37	+1	known	missense	c.965	p.S322N	1.000	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM8	HGNC	ENSG00000125885				131	1	0.757576	38	16	29.6296
MTG2	0	genome.wustl.edu	37	20	60768650	60768650	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	60768650	60768650	G	A	SNP	MTG2	ENST00000370823	human	ensembl	74_37	+1	known	silent	c.174	p.P58	0.000	NULL	pfam_GTP1_OBG_dom,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GTP1_OBG_dom,pirsf_GTP-bd_Obg/CgtA,prints_GTP_binding_domain,tigrfam_GTP-bd_Obg/CgtA,tigrfam_Small_GTP-bd_dom	-	no_errors	MTG2	HGNC	ENSG00000101181				54	0	0	19	15	44.1176
ANGPT4	0	genome.wustl.edu	37	20	860426	860426	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	20	860426	860426	G	A	SNP	ANGPT4	ENST00000381922	human	ensembl	74_37	-1	known	silent	c.1017	p.T339	0.001	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT4	HGNC	ENSG00000101280				106	0	0	36	3	7.69231
TIAM1	0	genome.wustl.edu	37	21	32493107	32493107	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	21	32493107	32493107	C	T	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	missense	c.4355	p.R1452Q	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				86	0	0	18	6	25
EVA1C	0	genome.wustl.edu	37	21	33867373	33867373	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	21	33867373	33867373	G	A	SNP	EVA1C	ENST00000300255	human	ensembl	74_37	+1	known	missense	c.671	p.R224Q	0.956	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	pfam_Lectin_gal-bd_dom,pfscan_Lectin_gal-bd_dom	-	no_errors	EVA1C	HGNC	ENSG00000166979				121	0	0	30	11	26.8293
SUMO3	0	genome.wustl.edu	37	21	46233863	46233863	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	21	46233863	46233863	G	C	SNP	SUMO3	ENST00000411651	human	ensembl	74_37	-1	known	missense	c.178	p.L60V	0.000	NULL	pfam_Rad60/SUMO_like,pfscan_Ubiquitin_supergroup	-	no_errors	SUMO3	HGNC	ENSG00000184900				89	0	0	25	3	10.7143
AIFM3	0	genome.wustl.edu	37	22	21334404	21334404	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	21334404	21334404	G	A	SNP	AIFM3	ENST00000399167	human	ensembl	74_37	+1	known	missense	c.1748	p.R583Q	1.000	superfamily_FAD/NAD-linked_Rdtase_dimer	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_FAD/NAD-linked_Rdtase_dimer,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Pyridine_nuc-diS_OxRdtase_2	-	no_errors	AIFM3	HGNC	ENSG00000183773				69	0	0	14	7	33.3333
SEC14L2	0	genome.wustl.edu	37	22	30812329	30812329	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	30812329	30812329	C	T	SNP	SEC14L2	ENST00000312932	human	ensembl	74_37	+1	known	nonsense	c.1018	p.Q340*	1.000	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L2	HGNC	ENSG00000100003				124	0	0	41	12	22.6415
SEC14L4	0	genome.wustl.edu	37	22	30891385	30891385	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	30891385	30891385	G	A	SNP	SEC14L4	ENST00000255858	human	ensembl	74_37	-1	known	silent	c.279	p.Y93	0.073	superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L4	HGNC	ENSG00000133488				143	0	0	51	18	26.087
SFI1	0	genome.wustl.edu	37	22	32000902	32000902	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	32000902	32000902	G	C	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	missense	c.2025	p.R675S	0.742	superfamily_Cyclin-like	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089				48	0	0	18	2	10
SERHL	0	genome.wustl.edu	37	22	42897745	42897745	+	RNA	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	42897745	42897745	G	A	SNP	SERHL	ENST00000359906	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SERHL	HGNC	ENSG00000172250				8	0	0	3	3	50
CNTN6	0	genome.wustl.edu	37	3	1414148	1414148	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	1414148	1414148	G	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.1658	p.R553M	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115				70	0	0	36	8	18.1818
PCOLCE2	0	genome.wustl.edu	37	3	142567080	142567080	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	142567080	142567080	C	T	SNP	PCOLCE2	ENST00000295992	human	ensembl	74_37	-1	known	missense	c.427	p.A143T	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Netrin_module_non-TIMP,superfamily_CUB_dom,superfamily_TIMP-like_OB-fold,smart_CUB_dom,smart_Netrin_module_non-TIMP,pfscan_CUB_dom,pfscan_Netrin_domain	-	no_errors	PCOLCE2	HGNC	ENSG00000163710				81	0	0	51	9	15
MME	0	genome.wustl.edu	37	3	154832866	154832866	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	154832866	154832866	C	T	SNP	MME	ENST00000360490	human	ensembl	74_37	+1	known	missense	c.280	p.R94C	0.998	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	MME	HGNC	ENSG00000196549				173	0	0	75	12	13.7931
FGF12	0	genome.wustl.edu	37	3	192053209	192053209	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	192053209	192053209	G	A	SNP	FGF12	ENST00000454309	human	ensembl	74_37	-1	known	nonsense	c.355	p.Q119*	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF12	HGNC	ENSG00000114279				88	0	0	38	22	36.6667
P4HTM	0	genome.wustl.edu	37	3	49042339	49042339	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	49042339	49042339	C	G	SNP	P4HTM	ENST00000343546	human	ensembl	74_37	+1	known	missense	c.933	p.S311R	0.096	smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	P4HTM	HGNC	ENSG00000178467				178	1	0.558659	37	19	33.9286
BSN	0	genome.wustl.edu	37	3	49680203	49680203	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	49680203	49680203	C	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	missense	c.1136	p.P379H	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061				96	0	0	41	22	34.9206
CPNE9	0	genome.wustl.edu	37	3	9756630	9756630	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	9756630	9756630	G	A	SNP	CPNE9	ENST00000383832	human	ensembl	74_37	+1	known	missense	c.683	p.R228Q	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom,pfscan_VWF_A	-	no_errors	CPNE9	HGNC	ENSG00000144550				82	0	0	40	9	18.3673
CIDEC	0	genome.wustl.edu	37	3	9911862	9911862	+	Missense_Mutation	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	3	9911862	9911862	G	C	SNP	CIDEC	ENST00000336832	human	ensembl	74_37	-1	known	missense	c.352	p.P118A	0.994	pfam_CIDE-N_dom,pfscan_CIDE-N_dom	pfam_CIDE-N_dom,smart_CIDE-N_dom,pfscan_CIDE-N_dom	-	no_errors	CIDEC	HGNC	ENSG00000187288				207	0	0	70	13	15.6627
LEF1	0	genome.wustl.edu	37	4	108991888	108991888	+	Silent	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	108991888	108991888	A	G	SNP	LEF1	ENST00000265165	human	ensembl	74_37	-1	known	silent	c.1047	p.Y349	1.000	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	pfam_CTNNB1-bd_N,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	LEF1	HGNC	ENSG00000138795				136	0	0	45	7	13.4615
UVSSA	0	genome.wustl.edu	37	4	1345537	1345537	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	1345537	1345537	C	G	SNP	UVSSA	ENST00000389851	human	ensembl	74_37	+1	known	missense	c.464	p.A155G	0.994	NULL	pfam_DUF2043,superfamily_ENTH_VHS	-	no_errors	UVSSA	HGNC	ENSG00000163945				142	0	0	16	9	36
ANXA10	0	genome.wustl.edu	37	4	169083757	169083757	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	169083757	169083757	C	T	SNP	ANXA10	ENST00000359299	human	ensembl	74_37	+1	known	silent	c.274	p.L92	0.516	NULL	pfam_Annexin_repeat,smart_Annexin_repeat,prints_Annexin,prints_AnnexinX	-	no_errors	ANXA10	HGNC	ENSG00000109511				58	0	0	24	3	11.1111
HAND2	0	genome.wustl.edu	37	4	174450016	174450016	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	174450016	174450016	C	T	SNP	HAND2	ENST00000359562	human	ensembl	74_37	-1	known	missense	c.425	p.R142H	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HAND2	HGNC	ENSG00000164107				223	0	0	31	22	41.5094
FAT1	0	genome.wustl.edu	37	4	187557880	187557880	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	187557880	187557880	G	A	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.3831	p.T1277	0.003	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857				427	0	0	132	43	24.5714
FRAS1	0	genome.wustl.edu	37	4	79396677	79396677	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	79396677	79396677	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.7768	p.R2590C	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759				123	0	0	29	5	14.7059
ARHGAP24	0	genome.wustl.edu	37	4	86893327	86893327	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	4	86893327	86893327	T	A	SNP	ARHGAP24	ENST00000503995	human	ensembl	74_37	+1	known	missense	c.738	p.S246R	0.736	pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639				78	0	0	16	22	57.8947
CHSY3	0	genome.wustl.edu	37	5	129241195	129241195	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	5	129241195	129241195	G	A	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.673	p.A225T	1.000	pfam_Fringe-like	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108				128	0	0	35	8	18.6047
PPP2R2B	0	genome.wustl.edu	37	5	145969504	145969504	+	RNA	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	5	145969504	145969504	G	T	SNP	PPP2R2B	ENST00000530902	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PPP2R2B	HGNC	ENSG00000156475				193	0	0	32	30	48.3871
SLC36A2	0	genome.wustl.edu	37	5	150696616	150696616	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	5	150696616	150696616	A	C	SNP	SLC36A2	ENST00000335244	human	ensembl	74_37	-1	known	missense	c.1214	p.L405R	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A2	HGNC	ENSG00000186335				36	0	0	14	4	22.2222
UGT3A1	0	genome.wustl.edu	37	5	35965682	35965682	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	5	35965682	35965682	T	C	SNP	UGT3A1	ENST00000274278	human	ensembl	74_37	-1	known	missense	c.649	p.M217V	0.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A1	HGNC	ENSG00000145626				133	0	0	52	32	38.0952
C5orf42	0	genome.wustl.edu	37	5	37170433	37170433	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	5	37170433	37170433	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	silent	c.6172	p.L2058	0.999	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				104	0	0	51	34	40
REV3L	0	genome.wustl.edu	37	6	111652933	111652933	+	Silent	SNP	A	A	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	111652933	111652933	A	G	SNP	REV3L	ENST00000358835	human	ensembl	74_37	-1	known	silent	c.7980	p.L2660	0.998	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413				208	0	0	43	31	41.8919
HIVEP1	0	genome.wustl.edu	37	6	12125570	12125570	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	12125570	12125570	G	A	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	missense	c.5542	p.V1848I	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951				128	0	0	67	15	18.2927
ITPR3	0	genome.wustl.edu	37	6	33656557	33656557	+	Silent	SNP	A	A	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	33656557	33656557	A	T	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.6693	p.T2231	0.939	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433				130	0	0	32	3	8.57143
MEP1A	0	genome.wustl.edu	37	6	46806809	46806809	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	46806809	46806809	C	T	SNP	MEP1A	ENST00000230588	human	ensembl	74_37	+1	known	missense	c.2177	p.T726M	0.002	pirsf_Pept_M12A_Meprin	pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EG-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl_sf,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom	-	no_errors	MEP1A	HGNC	ENSG00000112818				154	0	0	72	10	12.1951
CRISP3	0	genome.wustl.edu	37	6	49704128	49704128	+	Silent	SNP	G	G	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	49704128	49704128	G	C	SNP	CRISP3	ENST00000433368	human	ensembl	74_37	-1	known	silent	c.234	p.P78	0.009	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1	pfam_CAP_domain,pfam_Cysteine_rich_secretory,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	-	no_errors	CRISP3	HGNC	ENSG00000096006				233	0	0	88	18	16.9811
EEF1E1	0	genome.wustl.edu	37	6	8097522	8097522	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	8097522	8097522	T	C	SNP	EEF1E1	ENST00000379715	human	ensembl	74_37	-1	known	missense	c.266	p.N89S	0.997	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	pfam_GST_C,superfamily_Glutathione-S-Trfase_C-like	-	no_errors	EEF1E1	HGNC	ENSG00000124802				220	0	0	91	20	18.018
PGM3	0	genome.wustl.edu	37	6	83892684	83892684	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	83892684	83892684	T	A	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.471	p.L157F	0.924	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				92	0	0	32	18	36
PGM3	0	genome.wustl.edu	37	6	83892687	83892687	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	6	83892687	83892687	C	A	SNP	PGM3	ENST00000513973	human	ensembl	74_37	-1	known	missense	c.468	p.L156F	0.993	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,pirsf_PAGM	-	no_errors	PGM3	HGNC	ENSG00000013375				92	0	0	33	15	31.25
LRRC4	0	genome.wustl.edu	37	7	127670327	127670327	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	127670327	127670327	C	G	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.367	p.A123P	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594				109	0	0	34	11	24.4444
OR2F2	0	genome.wustl.edu	37	7	143632642	143632642	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	143632642	143632642	C	T	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	missense	c.317	p.A106V	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910				150	0	0	55	13	19.1176
PDIA4	0	genome.wustl.edu	37	7	148701057	148701057	+	Silent	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	148701057	148701057	G	A	SNP	PDIA4	ENST00000286091	human	ensembl	74_37	-1	known	silent	c.1767	p.D589	0.037	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	pirsf_Protein_diS-isomerase_A4,pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,prints_Calsequestrin,tigrfam_Prot_disulphide_isomerase,tigrfam_Disulphide_isomerase	-	no_errors	PDIA4	HGNC	ENSG00000155660				107	0	0	31	15	32.6087
GALNTL5	0	genome.wustl.edu	37	7	151684285	151684285	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	151684285	151684285	C	T	SNP	GALNTL5	ENST00000392800	human	ensembl	74_37	+1	known	missense	c.577	p.R193W	0.079	pfam_Glyco_trans_2	pfam_Glyco_trans_2	-	no_errors	GALNTL5	HGNC	ENSG00000106648				80	0	0	8	7	46.6667
PTPRN2	0	genome.wustl.edu	37	7	157931093	157931093	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	157931093	157931093	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	missense	c.1094	p.G365D	0.002	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				128	0	0	14	9	39.1304
PTPRN2	0	genome.wustl.edu	37	7	157959936	157959936	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	157959936	157959936	C	T	SNP	PTPRN2	ENST00000404321	human	ensembl	74_37	-1	known	silent	c.666	p.T222	0.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Receptor_IA-2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRN2	HGNC	ENSG00000155093				122	0	0	19	5	20.8333
SOSTDC1	0	genome.wustl.edu	37	7	16502239	16502239	+	Silent	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	16502239	16502239	G	T	SNP	SOSTDC1	ENST00000307068	human	ensembl	74_37	-1	known	silent	c.555	p.A185	0.998	pfam_Sclerostin/SOSTDC1	pfam_Sclerostin/SOSTDC1,pfam_Cys_knot,pfam_DAN,pfscan_Cys_knot_C	-	no_errors	SOSTDC1	HGNC	ENSG00000171243				187	0	0	107	32	23.0216
PDE1C	0	genome.wustl.edu	37	7	31917586	31917586	+	Missense_Mutation	SNP	T	T	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	31917586	31917586	T	G	SNP	PDE1C	ENST00000321453	human	ensembl	74_37	-1	known	missense	c.489	p.L163F	0.999	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678				65	0	0	39	5	11.3636
WBSCR17	0	genome.wustl.edu	37	7	70800582	70800582	+	Silent	SNP	T	T	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	70800582	70800582	T	G	SNP	WBSCR17	ENST00000333538	human	ensembl	74_37	+1	known	silent	c.285	p.G95	0.999	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274				100	0	0	24	15	38.4615
KIAA1324L	0	genome.wustl.edu	37	7	86542424	86542424	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	7	86542424	86542424	C	T	SNP	KIAA1324L	ENST00000450689	human	ensembl	74_37	-1	known	missense	c.1828	p.G610S	1.000	superfamily_Growth_fac_rcpt_N_dom	superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Growth_fac_rcpt_N_dom	-	no_errors	KIAA1324L	HGNC	ENSG00000164659				73	0	0	30	23	43.3962
CSMD3	0	genome.wustl.edu	37	8	113418956	113418956	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	113418956	113418956	G	T	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.5606	p.A1869D	1.000	superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796				90	0	0	35	6	14.6341
EFR3A	0	genome.wustl.edu	37	8	132997219	132997219	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	132997219	132997219	G	A	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.1781	p.R594H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				91	0	0	52	13	20
EEF1D	0	genome.wustl.edu	37	8	144662230	144662230	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	144662230	144662230	C	T	SNP	EEF1D	ENST00000532400	human	ensembl	74_37	-1	novel	missense	c.206	p.R69K	1.000	NULL	NULL	-	no_errors	EEF1D	HGNC	ENSG00000104529				138	0	0	45	4	8.16327
SLC25A37	0	genome.wustl.edu	37	8	23429083	23429083	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	23429083	23429083	C	T	SNP	SLC25A37	ENST00000519973	human	ensembl	74_37	+1	known	silent	c.732	p.A244	0.456	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A37	HGNC	ENSG00000147454				34	0	0	22	5	18.5185
KCNU1	0	genome.wustl.edu	37	8	36698509	36698509	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	36698509	36698509	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.1691	p.T564M	0.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				61	0	0	18	3	14.2857
MCM4	0	genome.wustl.edu	37	8	48889314	48889314	+	Silent	SNP	T	T	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	48889314	48889314	T	C	SNP	MCM4	ENST00000262105	human	ensembl	74_37	+1	known	silent	c.2568	p.T856	0.984	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738				125	0	0	33	8	19.5122
NSMAF	0	genome.wustl.edu	37	8	59535981	59535981	+	Silent	SNP	A	A	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	8	59535981	59535981	A	T	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	silent	c.552	p.L184	0.963	NULL	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681				174	0	0	61	23	27.381
ANKS6	0	genome.wustl.edu	37	9	101533322	101533322	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	101533322	101533322	C	T	SNP	ANKS6	ENST00000375018	human	ensembl	74_37	-1	known	missense	c.1828	p.V610I	0.003	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,prints_Ankyrin_rpt	-	no_errors	ANKS6	HGNC	ENSG00000165138				63	0	0	8	14	63.6364
TNC	0	genome.wustl.edu	37	9	117825304	117825304	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	117825304	117825304	G	A	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.3925	p.R1309C	0.235	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982				44	0	0	23	5	17.8571
ASTN2	0	genome.wustl.edu	37	9	119976939	119976939	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	119976939	119976939	C	T	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	missense	c.713	p.R238H	1.000	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219				89	0	0	25	5	16.6667
SH3GLB2	0	genome.wustl.edu	37	9	131784687	131784687	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	131784687	131784687	A	C	SNP	SH3GLB2	ENST00000372554	human	ensembl	74_37	-1	known	missense	c.79	p.F27V	0.999	pfam_BAR_dom,smart_BAR_dom,pfscan_BAR_dom	pfam_BAR_dom,pfam_BAR_dom-cont,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain	-	no_errors	SH3GLB2	HGNC	ENSG00000148341				48	0	0	9	2	18.1818
GLT6D1	0	genome.wustl.edu	37	9	138518015	138518015	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	138518015	138518015	C	G	SNP	GLT6D1	ENST00000371763	human	ensembl	74_37	-1	known	missense	c.157	p.A53P	0.987	pfam_Glyco_trans_6	pfam_Glyco_trans_6	-	no_errors	GLT6D1	HGNC	ENSG00000204007				151	1	0.657895	34	16	32
CACNA1B	0	genome.wustl.edu	37	9	140777327	140777327	+	Silent	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	140777327	140777327	C	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	silent	c.522	p.V174	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408				503	0	0	131	29	18.125
ZNF658	0	genome.wustl.edu	37	9	40774433	40774433	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	40774433	40774433	T	A	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	missense	c.842	p.K281I	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409				214	0	0	76	72	48.6486
PHF2	0	genome.wustl.edu	37	9	96428068	96428068	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	9	96428068	96428068	G	A	SNP	PHF2	ENST00000359246	human	ensembl	74_37	+1	known	missense	c.2038	p.V680M	1.000	NULL	pfam_JmjC_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF2	HGNC	ENSG00000197724				301	0	0	36	40	52.6316
MUM1L1	0	genome.wustl.edu	37	X	105450999	105450999	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	105450999	105450999	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	74_37	+1	known	missense	c.1574	p.P525L	0.000	NULL	superfamily_PyrdxlP-dep_Trfase	-	no_errors	MUM1L1	HGNC	ENSG00000157502				52	0	0	19	5	20.8333
TENM1	0	genome.wustl.edu	37	X	123540329	123540329	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	123540329	123540329	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.4993	p.E1665K	0.988	tigrfam_YD	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694				187	0	0	58	11	15.942
GRPR	0	genome.wustl.edu	37	X	16142390	16142390	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	16142390	16142390	G	T	SNP	GRPR	ENST00000380289	human	ensembl	74_37	+1	known	missense	c.314	p.R105I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Bombsn_rcpt,prints_Gastrin_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	GRPR	HGNC	ENSG00000126010				198	0	0	67	31	31.6327
CNKSR2	0	genome.wustl.edu	37	X	21450741	21450741	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	21450741	21450741	G	T	SNP	CNKSR2	ENST00000379510	human	ensembl	74_37	+1	known	missense	c.240	p.L80F	1.000	superfamily_SAM/pointed	pfam_CNKSR2,pfam_CRIC_domain_Chordata,pfam_SAM_type1,pfam_Pleckstrin_homology,pfam_SAM_2,pfam_PDZ,superfamily_SAM/pointed,superfamily_PDZ,smart_SAM,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_SAM	-	no_errors	CNKSR2	HGNC	ENSG00000149970				201	0	0	102	21	17.0732
FAM47C	0	genome.wustl.edu	37	X	37029349	37029349	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	37029349	37029349	C	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.2866	p.P956T	0.028	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				255	0	0	105	18	14.6341
RPS6KA6	0	genome.wustl.edu	37	X	83359569	83359569	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	X	83359569	83359569	G	A	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	missense	c.1552	p.R518W	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				68	0	0	13	6	31.5789
AXDND1	0	genome.wustl.edu	37	1	179504026	179504028	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	1	179504026	179504028	AAG	-	DEL	AXDND1	ENST00000367618	human	ensembl	74_37	+1	known	in_frame_del	c.2960_2962	p.E991in_frame_del	0.004:0.002:0.015	NULL	pfam_Axonemal_dynein_light_chain	-	no_errors	AXDND1	HGNC	ENSG00000162779				56	0	0	19	3	13.6364
APBB1IP	0	genome.wustl.edu	37	10	26851119	26851120	+	RNA	INS	-	-	T			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	10	26851119	26851120	-	T	INS	APBB1IP	ENST00000493857	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	APBB1IP	HGNC	ENSG00000077420				53	0	0	29	10	25.641
DNM1P47	0	genome.wustl.edu	37	15	102312241	102312241	+	RNA	DEL	A	A	-			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	15	102312241	102312241	A	-	DEL	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				53	0	0	14	8	36.3636
EZH1	0	genome.wustl.edu	37	17	40864502	40864503	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	17	40864502	40864503	CT	-	DEL	EZH1	ENST00000428826	human	ensembl	74_37	-1	known	frame_shift_del	c.1206_1205	p.E402fs	1.000:1.000	NULL	pfam_SET_dom,pfam_EZH2_WD-Binding,superfamily_Homeodomain-like,smart_SANT/Myb,smart_SET_dom,pfscan_SET_dom	-	no_errors	EZH1	HGNC	ENSG00000108799				161	0	0	18	21	53.8462
ENSG00000225528	0	genome.wustl.edu	37	22	40360564	40360565	+	RNA	INS	-	-	A			TCGA-CD-8528-01A-11D-2340-08	TCGA-CD-8528-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f1428870-65bf-45a5-b321-578ad94288c1	07bd0343-e5c6-48bf-ae2a-1d3d56b624ea	22	40360564	40360565	-	A	INS	ENSG00000225528	ENST00000424496	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986:0.826	-	-	-	no_errors	RP3-370M22.8	Clone_based_vega_gene	ENSG00000225528				25	0	0	5	6	54.5455
