Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AMY1C	0	genome.wustl.edu	37	1	104297162	104297162	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	104297162	104297162	C	T	SNP	AMY1C	ENST00000370079	human	ensembl	74_37	+1	known	missense	c.920	p.A307V	1.000	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,prints_Alpha_amylase	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY1C	HGNC	ENSG00000187733				139	0	0	158	20	11.236
SPAG17	0	genome.wustl.edu	37	1	118584644	118584644	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	118584644	118584644	G	A	SNP	SPAG17	ENST00000336338	human	ensembl	74_37	-1	known	nonsense	c.2836	p.R946*	0.418	NULL	NULL	-	no_errors	SPAG17	HGNC	ENSG00000155761				83	0	0	42	23	35.3846
IGSF9	0	genome.wustl.edu	37	1	159901782	159901782	+	RNA	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	159901782	159901782	C	A	SNP	IGSF9	ENST00000496645	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGSF9	HGNC	ENSG00000085552				15	0	0	35	2	5.40541
ENSG00000233421	0	genome.wustl.edu	37	1	16861877	16861877	+	RNA	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	16861877	16861877	T	C	SNP	ENSG00000233421	ENST00000415386	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	U1	RFAM	ENSG00000233421				8	0	0	1	4	80
PLEKHA6	0	genome.wustl.edu	37	1	204197879	204197879	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	204197879	204197879	G	A	SNP	PLEKHA6	ENST00000272203	human	ensembl	74_37	-1	known	silent	c.2862	p.I954	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA6	HGNC	ENSG00000143850				55	0	0	56	5	8.19672
TMCC2	0	genome.wustl.edu	37	1	205210967	205210967	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	205210967	205210967	G	A	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	missense	c.542	p.R181Q	1.000	NULL	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069				12	0	0	23	5	17.8571
MAP10	0	genome.wustl.edu	37	1	232941162	232941162	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	232941162	232941162	G	A	SNP	MAP10	ENST00000418460	human	ensembl	74_37	+1	known	silent	c.393	p.A131	0.000	NULL	NULL	-	no_errors	MAP10	HGNC	ENSG00000212916				23	0	0	19	9	32.1429
ADAM8	0	genome.wustl.edu	37	10	135087518	135087518	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	10	135087518	135087518	G	A	SNP	ADAM8	ENST00000485491	human	ensembl	74_37	-1	known	missense	c.139	p.R47W	0.004	NULL	pfam_Peptidase_M12B,pfam_Blood-coag_inhib_Disintegrin,pfam_ADAM_Cys-rich,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM8	HGNC	ENSG00000151651				15	0	0	13	5	27.7778
FAM188A	0	genome.wustl.edu	37	10	15879259	15879259	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	10	15879259	15879259	T	C	SNP	FAM188A	ENST00000277632	human	ensembl	74_37	-1	known	missense	c.520	p.M174V	0.998	NULL	NULL	-	no_errors	FAM188A	HGNC	ENSG00000148481				104	0	0	96	20	17.2414
VIM	0	genome.wustl.edu	37	10	17276730	17276730	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	10	17276730	17276730	C	T	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	silent	c.921	p.D307	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025				72	0	0	89	8	8.24742
NSUN6	0	genome.wustl.edu	37	10	18840880	18840880	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	10	18840880	18840880	C	T	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	missense	c.943	p.E315K	0.999	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058				45	0	0	56	9	13.8462
MSS51	0	genome.wustl.edu	37	10	75186022	75186022	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	10	75186022	75186022	G	T	SNP	MSS51	ENST00000299432	human	ensembl	74_37	-1	known	missense	c.616	p.L206I	0.385	NULL	pfam_Znf_MYND,pfscan_Znf_MYND	-	no_errors	MSS51	HGNC	ENSG00000166343				101	0	0	105	25	19.2308
ST3GAL4	0	genome.wustl.edu	37	11	126277130	126277130	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	126277130	126277130	C	G	SNP	ST3GAL4	ENST00000356132	human	ensembl	74_37	+1	known	missense	c.184	p.L62V	0.000	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL4	HGNC	ENSG00000110080				121	0	0	154	21	12
OR51B5	0	genome.wustl.edu	37	11	5364062	5364062	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	5364062	5364062	C	T	SNP	OR51B5	ENST00000300773	human	ensembl	74_37	-1	known	silent	c.693	p.E231	0.003	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51B5	HGNC	ENSG00000242180				87	0	0	116	15	11.4504
ZBTB3	0	genome.wustl.edu	37	11	62519821	62519821	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	62519821	62519821	C	T	SNP	ZBTB3	ENST00000394807	human	ensembl	74_37	-1	known	missense	c.1466	p.R489Q	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB3	HGNC	ENSG00000185670				43	0	0	68	19	21.8391
LRP5	0	genome.wustl.edu	37	11	68153890	68153890	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	68153890	68153890	C	T	SNP	LRP5	ENST00000294304	human	ensembl	74_37	+1	known	silent	c.1122	p.H374	0.998	pirsf_Low_density_Lipo_rcpt-rel_p5/6,smart_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_LDrepeatLR_classA_rpt,prints_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP5	HGNC	ENSG00000162337				51	0	0	83	13	13.5417
SCUBE2	0	genome.wustl.edu	37	11	9069049	9069049	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	9069049	9069049	C	T	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.1856	p.R619H	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				43	0	0	87	10	10.3093
SCUBE2	0	genome.wustl.edu	37	11	9069067	9069067	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	11	9069067	9069067	C	A	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	missense	c.1838	p.R613L	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				44	0	0	71	9	11.25
PPP1R12A	0	genome.wustl.edu	37	12	80214567	80214567	+	Silent	SNP	T	T	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	12	80214567	80214567	T	A	SNP	PPP1R12A	ENST00000261207	human	ensembl	74_37	-1	known	silent	c.1101	p.S367	0.975	pirsf_Pase-1_reg_su_12A/B/C_euk	pirsf_Pase-1_reg_su_12A/B/C_euk,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	PPP1R12A	HGNC	ENSG00000058272				55	0	0	48	15	23.8095
SLITRK5	0	genome.wustl.edu	37	13	88327808	88327808	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	13	88327808	88327808	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.165	p.E55	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				90	0	0	106	13	10.9244
PSME1	0	genome.wustl.edu	37	14	24607984	24607984	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	14	24607984	24607984	C	T	SNP	PSME1	ENST00000206451	human	ensembl	74_37	+1	known	missense	c.709	p.L237F	1.000	pfam_Proteasome_activ_pa28_C,superfamily_Proteasome_activ_pa28	pfam_Proteasome_activ_pa28_C,pfam_Proteasome_activ_pa28_N,superfamily_Proteasome_activ_pa28	-	no_errors	PSME1	HGNC	ENSG00000092010				45	0	0	29	8	21.6216
ADCY4	0	genome.wustl.edu	37	14	24798738	24798738	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	14	24798738	24798738	G	A	SNP	ADCY4	ENST00000310677	human	ensembl	74_37	-1	known	nonsense	c.1219	p.R407*	0.213	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY4	HGNC	ENSG00000129467				50	0	0	46	13	22.0339
PNN	0	genome.wustl.edu	37	14	39650001	39650001	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	14	39650001	39650001	A	C	SNP	PNN	ENST00000216832	human	ensembl	74_37	+1	known	missense	c.1088	p.E363A	1.000	NULL	pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA	-	no_errors	PNN	HGNC	ENSG00000100941				21	0	0	19	4	17.3913
DNM1P47	0	genome.wustl.edu	37	15	102292766	102292766	+	RNA	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	15	102292766	102292766	G	T	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.976	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				33	0	0	30	10	25
WASH3P	0	genome.wustl.edu	37	15	102515299	102515299	+	RNA	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	15	102515299	102515299	G	A	SNP	WASH3P	ENST00000557932	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WASH3P	HGNC	ENSG00000185596				45	0	0	43	4	8.51064
SNORD115-4	0	genome.wustl.edu	37	15	25422005	25422005	+	RNA	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	15	25422005	25422005	T	C	SNP	SNORD115-4	ENST00000363810	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SNORD115-4	HGNC	ENSG00000200680				342	0	0	247	16	6.08365
RRN3P1	0	genome.wustl.edu	37	16	21823661	21823661	+	RNA	SNP	A	A	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	16	21823661	21823661	A	C	SNP	RRN3P1	ENST00000551681	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124				14	0	0	6	5	45.4545
SRRM2	0	genome.wustl.edu	37	16	2817757	2817757	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	16	2817757	2817757	C	T	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	missense	c.7228	p.P2410S	1.000	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				89	0	0	65	21	24.4186
ARMC5	0	genome.wustl.edu	37	16	31476013	31476013	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	16	31476013	31476013	G	A	SNP	ARMC5	ENST00000408912	human	ensembl	74_37	+1	known	missense	c.1954	p.G652S	0.392	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_BTB/POZ_fold,smart_Armadillo,pfscan_Armadillo,pfscan_BTB/POZ-like	-	no_errors	ARMC5	HGNC	ENSG00000140691				33	0	0	11	16	59.2593
MEFV	0	genome.wustl.edu	37	16	3299631	3299631	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	16	3299631	3299631	G	A	SNP	MEFV	ENST00000219596	human	ensembl	74_37	-1	known	missense	c.1060	p.R354W	0.000	NULL	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_DEATH-like_dom,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313				37	0	0	13	28	68.2927
ZC3H18	0	genome.wustl.edu	37	16	88688687	88688687	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	16	88688687	88688687	C	T	SNP	ZC3H18	ENST00000301011	human	ensembl	74_37	+1	known	missense	c.1558	p.R520C	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545				29	0	0	30	7	18.9189
PLD6	0	genome.wustl.edu	37	17	17106107	17106107	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	17106107	17106107	C	T	SNP	PLD6	ENST00000321560	human	ensembl	74_37	-1	known	missense	c.733	p.G245S	0.000	NULL	smart_PLipase_D/transphosphatidylase,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD6	HGNC	ENSG00000179598				50	0	0	16	19	54.2857
TRIM16L	0	genome.wustl.edu	37	17	18631020	18631020	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	18631020	18631020	G	A	SNP	TRIM16L	ENST00000395902	human	ensembl	74_37	+1	known	silent	c.312	p.K104	0.670	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	TRIM16L	HGNC	ENSG00000108448				104	0	0	53	56	51.3761
KSR1	0	genome.wustl.edu	37	17	25904525	25904525	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	25904525	25904525	C	T	SNP	KSR1	ENST00000319524	human	ensembl	74_37	+1	known	missense	c.380	p.P127L	0.139	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	KSR1	HGNC	ENSG00000141068				11	0	0	14	4	22.2222
ATP2A3	0	genome.wustl.edu	37	17	3854675	3854675	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	3854675	3854675	G	A	SNP	ATP2A3	ENST00000359983	human	ensembl	74_37	-1	known	silent	c.333	p.N111	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_IIA,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2A3	HGNC	ENSG00000074370				64	0	0	38	16	29.6296
TNS4	0	genome.wustl.edu	37	17	38652509	38652509	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	38652509	38652509	C	T	SNP	TNS4	ENST00000254051	human	ensembl	74_37	-1	known	missense	c.169	p.V57M	0.000	NULL	pfam_PTB,pfam_SH2,smart_SH2,smart_PTB/PI_dom,pfscan_SH2	-	no_errors	TNS4	HGNC	ENSG00000131746				63	0	0	43	16	27.1186
KRTAP4-9	0	genome.wustl.edu	37	17	39262083	39262083	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	39262083	39262083	A	C	SNP	KRTAP4-9	ENST00000391415	human	ensembl	74_37	+1	known	missense	c.443	p.N148T	0.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722				35	0	0	43	6	12.2449
CACNA1G	0	genome.wustl.edu	37	17	48674155	48674155	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	48674155	48674155	G	A	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	silent	c.3129	p.T1043	0.968	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283				36	0	0	31	5	13.8889
RGS9	0	genome.wustl.edu	37	17	63156397	63156397	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	63156397	63156397	C	T	SNP	RGS9	ENST00000262406	human	ensembl	74_37	+1	known	silent	c.252	p.Y84	0.998	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS9	HGNC	ENSG00000108370				73	0	0	58	14	19.4444
ABCA5	0	genome.wustl.edu	37	17	67273963	67273963	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	67273963	67273963	G	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	nonsense	c.2413	p.Q805*	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265				27	0	0	18	5	21.7391
CARD14	0	genome.wustl.edu	37	17	78163619	78163619	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	78163619	78163619	G	A	SNP	CARD14	ENST00000344227	human	ensembl	74_37	+1	known	missense	c.911	p.R304H	1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin-like	-	no_errors	CARD14	HGNC	ENSG00000141527				45	0	0	29	17	36.9565
AQP4	0	genome.wustl.edu	37	18	24436277	24436277	+	Silent	SNP	A	A	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	18	24436277	24436277	A	G	SNP	AQP4	ENST00000383168	human	ensembl	74_37	-1	known	silent	c.870	p.D290	0.004	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	AQP4	HGNC	ENSG00000171885				187	0	0	170	44	20.5607
ELL	0	genome.wustl.edu	37	19	18576690	18576690	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	18576690	18576690	C	T	SNP	ELL	ENST00000262809	human	ensembl	74_37	-1	known	silent	c.222	p.A74	0.633	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL	HGNC	ENSG00000105656				25	0	0	12	6	33.3333
UPF1	0	genome.wustl.edu	37	19	18963058	18963058	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	18963058	18963058	C	G	SNP	UPF1	ENST00000599848	human	ensembl	74_37	+1	known	missense	c.925	p.L309V	0.997	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase	-	no_errors	UPF1	HGNC	ENSG00000005007				154	0	0	83	31	27.193
ZNF780B	0	genome.wustl.edu	37	19	40540586	40540586	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	40540586	40540586	C	T	SNP	ZNF780B	ENST00000434248	human	ensembl	74_37	-1	known	missense	c.2180	p.C727Y	0.753	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF780B	HGNC	ENSG00000128000				48	0	0	26	24	48
ZNF285	0	genome.wustl.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	44891043	44891043	G	T	SNP	ZNF285	ENST00000330997	human	ensembl	74_37	-1	known	missense	c.1364	p.P455Q	0.995	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF285	HGNC	ENSG00000267508				75	0	0	60	6	9.09091
KPTN	0	genome.wustl.edu	37	19	47984033	47984033	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	47984033	47984033	T	C	SNP	KPTN	ENST00000338134	human	ensembl	74_37	-1	known	missense	c.583	p.T195A	1.000	NULL	NULL	-	no_errors	KPTN	HGNC	ENSG00000118162				201	0	0	86	104	54.7368
HRC	0	genome.wustl.edu	37	19	49657413	49657413	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	49657413	49657413	C	T	SNP	HRC	ENST00000252825	human	ensembl	74_37	-1	known	missense	c.1082	p.R361H	0.968	NULL	pfam_Hist_rich_Ca-bd	-	no_errors	HRC	HGNC	ENSG00000130528				58	0	0	53	12	18.4615
ZNF582	0	genome.wustl.edu	37	19	56895714	56895714	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	56895714	56895714	G	A	SNP	ZNF582	ENST00000301310	human	ensembl	74_37	-1	known	nonsense	c.1072	p.Q358*	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF582	HGNC	ENSG00000018869				61	0	0	53	14	20.8955
EVI5L	0	genome.wustl.edu	37	19	7916351	7916351	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	7916351	7916351	G	A	SNP	EVI5L	ENST00000538904	human	ensembl	74_37	+1	known	missense	c.785	p.R262H	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	EVI5L	HGNC	ENSG00000142459				128	0	0	62	60	49.1803
ST6GAL2	0	genome.wustl.edu	37	2	107446537	107446537	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	2	107446537	107446537	A	G	SNP	ST6GAL2	ENST00000361686	human	ensembl	74_37	-1	known	missense	c.1303	p.S435P	0.998	pfam_Glyco_trans_29	pfam_Glyco_trans_29,superfamily_Glyco_hydro/deAcase_b/a-brl	-	no_errors	ST6GAL2	HGNC	ENSG00000144057				81	0	0	97	9	8.49057
KIF5C	0	genome.wustl.edu	37	2	149847638	149847638	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	2	149847638	149847638	G	A	SNP	KIF5C	ENST00000435030	human	ensembl	74_37	+1	known	missense	c.1831	p.A611T	0.995	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF5C	HGNC	ENSG00000168280				38	0	0	26	19	42.2222
RAPGEF4	0	genome.wustl.edu	37	2	173855568	173855568	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	2	173855568	173855568	G	A	SNP	RAPGEF4	ENST00000397081	human	ensembl	74_37	+1	known	missense	c.1405	p.E469K	1.000	superfamily_Ras_GEF_dom,smart_cNMP-bd_dom	pfam_RasGRF_CDC25,pfam_cNMP-bd_dom,pfam_DEP_dom,pfam_Ras-like_Gua-exchang_fac_N,pfam_Ras-assoc,superfamily_Ras_GEF_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_DEP_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_DEP_dom,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_cAMP/cGMP_kin	-	no_errors	RAPGEF4	HGNC	ENSG00000091428				28	0	0	17	14	45.1613
ABCA12	0	genome.wustl.edu	37	2	215891623	215891623	+	Silent	SNP	A	A	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	2	215891623	215891623	A	G	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	silent	c.1101	p.N367	0.842	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452				108	0	0	70	70	50
NRXN1	0	genome.wustl.edu	37	2	50779727	50779727	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	2	50779727	50779727	G	T	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	nonsense	c.1733	p.S578*	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				81	0	0	78	8	9.30233
PROKR2	0	genome.wustl.edu	37	20	5294595	5294595	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	20	5294595	5294595	C	T	SNP	PROKR2	ENST00000217270	human	ensembl	74_37	-1	known	missense	c.421	p.V141I	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PROKR2	HGNC	ENSG00000101292				37	0	0	74	20	21.2766
EP300	0	genome.wustl.edu	37	22	41573763	41573763	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	22	41573763	41573763	G	A	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	missense	c.6048	p.M2016I	1.000	pfam_Nuc_rcpt_coact_CREBbp	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	EP300	HGNC	ENSG00000100393				83	0	0	76	14	15.5556
KIAA1407	0	genome.wustl.edu	37	3	113699559	113699559	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	113699559	113699559	G	A	SNP	KIAA1407	ENST00000295878	human	ensembl	74_37	-1	known	silent	c.2245	p.L749	0.969	NULL	NULL	-	no_errors	KIAA1407	HGNC	ENSG00000163617				126	0	0	149	8	5.09554
MYLK	0	genome.wustl.edu	37	3	123471320	123471320	+	Silent	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	123471320	123471320	G	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	silent	c.231	p.G77	0.999	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				36	0	0	33	17	34
KALRN	0	genome.wustl.edu	37	3	124210189	124210189	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	124210189	124210189	C	T	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.4601	p.T1534I	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145				38	0	0	32	6	15.7895
COPG1	0	genome.wustl.edu	37	3	128973560	128973560	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	128973560	128973560	G	A	SNP	COPG1	ENST00000314797	human	ensembl	74_37	+1	known	missense	c.373	p.V125M	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Coatomer_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Coatomer_gsu_app_Ig-like-sub,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,superfamily_Coatomer/calthrin_app_sub_C,pirsf_Coatomer_gsu	-	no_errors	COPG1	HGNC	ENSG00000181789				32	0	0	44	11	20
SI	0	genome.wustl.edu	37	3	164777815	164777815	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	164777815	164777815	G	A	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.1021	p.L341F	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				48	0	0	71	4	5.33333
ZNF860	0	genome.wustl.edu	37	3	32030985	32030985	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	32030985	32030985	C	T	SNP	ZNF860	ENST00000360311	human	ensembl	74_37	+1	known	silent	c.414	p.T138	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF860	HGNC	ENSG00000197385				76	0	0	47	51	52.0408
CACNA1D	0	genome.wustl.edu	37	3	53752408	53752408	+	Missense_Mutation	SNP	A	A	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	3	53752408	53752408	A	T	SNP	CACNA1D	ENST00000288139	human	ensembl	74_37	+1	known	missense	c.1471	p.S491C	0.833	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388				61	0	0	60	15	20
DCHS2	0	genome.wustl.edu	37	4	155163809	155163809	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	4	155163809	155163809	C	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	missense	c.5692	p.V1898L	0.996	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410				55	0	0	43	24	35.8209
LETM1	0	genome.wustl.edu	37	4	1843232	1843232	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	4	1843232	1843232	C	G	SNP	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	missense	c.436	p.E146Q	0.095	NULL	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924				51	0	0	34	17	33.3333
FAM193A	0	genome.wustl.edu	37	4	2701681	2701681	+	Missense_Mutation	SNP	A	A	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	4	2701681	2701681	A	G	SNP	FAM193A	ENST00000324666	human	ensembl	74_37	+1	known	missense	c.2909	p.N970S	0.764	NULL	NULL	-	no_errors	FAM193A	HGNC	ENSG00000125386				86	0	0	41	58	58.5859
NSUN7	0	genome.wustl.edu	37	4	40753002	40753002	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	4	40753002	40753002	C	T	SNP	NSUN7	ENST00000381782	human	ensembl	74_37	+1	known	silent	c.292	p.L98	1.000	NULL	pfam_Fmu/NOL1/Nop2p	-	no_errors	NSUN7	HGNC	ENSG00000179299				54	0	0	35	14	28.5714
PCDHB7	0	genome.wustl.edu	37	5	140554232	140554232	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	140554232	140554232	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	silent	c.1816	p.L606	0.999	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212				179	0	0	147	32	17.8771
PCDHB12	0	genome.wustl.edu	37	5	140588662	140588662	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	140588662	140588662	G	A	SNP	PCDHB12	ENST00000239450	human	ensembl	74_37	+1	known	silent	c.183	p.S61	0.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB12	HGNC	ENSG00000120328				96	0	0	54	53	49.5327
TRIO	0	genome.wustl.edu	37	5	14406052	14406052	+	Silent	SNP	C	C	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	14406052	14406052	C	G	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	silent	c.4812	p.P1604	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382				30	0	0	23	31	57.4074
IL12B	0	genome.wustl.edu	37	5	158750330	158750330	+	Silent	SNP	G	G	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	158750330	158750330	G	C	SNP	IL12B	ENST00000231228	human	ensembl	74_37	-1	known	silent	c.96	p.V32	0.141	pirsf_IL-12_beta,pfscan_Ig-like_dom	pirsf_IL-12_beta,pfam_IL-12_beta_cen-dom,superfamily_Fibronectin_type3,smart_Ig_sub2,prints_IL-12_beta,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IL12B	HGNC	ENSG00000113302				26	0	0	21	8	27.5862
SLC34A1	0	genome.wustl.edu	37	5	176815004	176815004	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	176815004	176815004	G	A	SNP	SLC34A1	ENST00000324417	human	ensembl	74_37	+1	known	silent	c.654	p.A218	0.239	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	pfam_Na/Pi_transpt,tigrfam_Na/Pi_transpt	-	no_errors	SLC34A1	HGNC	ENSG00000131183				52	0	0	129	15	10.4167
CDH18	0	genome.wustl.edu	37	5	19747086	19747086	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	19747086	19747086	G	T	SNP	CDH18	ENST00000274170	human	ensembl	74_37	-1	known	missense	c.488	p.P163Q	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH18	HGNC	ENSG00000145526				58	0	0	112	19	14.5038
ZFR	0	genome.wustl.edu	37	5	32397359	32397359	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	32397359	32397359	T	C	SNP	ZFR	ENST00000265069	human	ensembl	74_37	-1	known	missense	c.1799	p.H600R	1.000	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like	pfam_DZF,pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,smart_DZF	-	no_errors	ZFR	HGNC	ENSG00000056097				83	0	0	149	20	11.8343
GHR	0	genome.wustl.edu	37	5	42700016	42700016	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	42700016	42700016	C	A	SNP	GHR	ENST00000230882	human	ensembl	74_37	+1	known	missense	c.530	p.A177E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Growth/epo_recpt_lig-bind,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	GHR	HGNC	ENSG00000112964				52	0	0	78	7	8.23529
LAMA2	0	genome.wustl.edu	37	6	129634005	129634005	+	Splice_Site	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	129634005	129634005	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	splice_site	c.3175-1	e23-1	1.000	-	-	-	no_errors	LAMA2	HGNC	ENSG00000196569				14	0	0	19	3	13.6364
UTRN	0	genome.wustl.edu	37	6	144837465	144837465	+	Missense_Mutation	SNP	T	T	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	144837465	144837465	T	A	SNP	UTRN	ENST00000367545	human	ensembl	74_37	+1	known	missense	c.5345	p.I1782K	0.997	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	UTRN	HGNC	ENSG00000152818				29	0	0	44	9	16.9811
TULP4	0	genome.wustl.edu	37	6	158735187	158735187	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	158735187	158735187	G	A	SNP	TULP4	ENST00000367097	human	ensembl	74_37	+1	known	missense	c.139	p.A47T	1.000	superfamily_WD40_repeat_dom	pfam_Tubby_C,pfam_SOCS_C,pfam_WD40_repeat,superfamily_Tubby_C-like,superfamily_WD40_repeat_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_WD40_repeat,smart_SOCS_C,pfscan_SOCS_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TULP4	HGNC	ENSG00000130338				59	0	0	57	16	21.9178
TRIM38	0	genome.wustl.edu	37	6	25969609	25969609	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	25969609	25969609	G	A	SNP	TRIM38	ENST00000349458	human	ensembl	74_37	+1	known	silent	c.468	p.E156	0.000	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343				47	0	0	47	31	39.7436
ZNF311	0	genome.wustl.edu	37	6	28967286	28967286	+	Missense_Mutation	SNP	A	A	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	28967286	28967286	A	T	SNP	ZNF311	ENST00000377179	human	ensembl	74_37	-1	known	missense	c.288	p.N96K	0.892	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF311	HGNC	ENSG00000197935				66	0	0	61	20	24.6914
TUBB	0	genome.wustl.edu	37	6	30691661	30691661	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	30691661	30691661	C	T	SNP	TUBB	ENST00000327892	human	ensembl	74_37	+1	known	silent	c.822	p.T274	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB	HGNC	ENSG00000196230				111	0	0	85	61	41.7808
EEF1A1	0	genome.wustl.edu	37	6	74228776	74228776	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	74228776	74228776	T	C	SNP	EEF1A1	ENST00000309268	human	ensembl	74_37	-1	known	missense	c.500	p.Y167C	0.999	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508				19	0	0	22	5	18.5185
MAP3K7	0	genome.wustl.edu	37	6	91257851	91257851	+	Missense_Mutation	SNP	T	T	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	6	91257851	91257851	T	G	SNP	MAP3K7	ENST00000369329	human	ensembl	74_37	-1	known	missense	c.995	p.D332A	1.000	pirsf_MAPKKK7	pirsf_MAPKKK7,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K7	HGNC	ENSG00000135341				32	0	0	44	5	10.2041
FBXO24	0	genome.wustl.edu	37	7	100198354	100198354	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	100198354	100198354	G	T	SNP	FBXO24	ENST00000427939	human	ensembl	74_37	+1	known	missense	c.1689	p.Q563H	1.000	NULL	pfam_F-box_dom,pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom,pfscan_Reg_chr_condens	-	no_errors	FBXO24	HGNC	ENSG00000106336				84	0	0	98	20	16.9492
CYP2W1	0	genome.wustl.edu	37	7	1028295	1028295	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	1028295	1028295	G	A	SNP	CYP2W1	ENST00000308919	human	ensembl	74_37	+1	known	missense	c.1310	p.R437H	0.997	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP2W1	HGNC	ENSG00000073067				58	0	0	42	22	34.375
CDHR3	0	genome.wustl.edu	37	7	105671267	105671267	+	Silent	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	105671267	105671267	T	C	SNP	CDHR3	ENST00000317716	human	ensembl	74_37	+1	known	silent	c.2334	p.D778	1.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR3	HGNC	ENSG00000128536				10	0	0	12	5	29.4118
SLC26A3	0	genome.wustl.edu	37	7	107408041	107408041	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	107408041	107408041	G	A	SNP	SLC26A3	ENST00000340010	human	ensembl	74_37	-1	known	missense	c.2254	p.R752C	1.000	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A3	HGNC	ENSG00000091138				24	0	0	35	6	14.6341
AEBP1	0	genome.wustl.edu	37	7	44153426	44153426	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	44153426	44153426	C	A	SNP	AEBP1	ENST00000223357	human	ensembl	74_37	+1	known	missense	c.3043	p.Q1015K	0.760	NULL	pfam_Peptidase_M14,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_CarboxyPept-like_regulatory,smart_Coagulation_fac_5/8-C_type_dom,smart_Peptidase_M14,pfscan_Coagulation_fac_5/8-C_type_dom,prints_Peptidase_M14	-	no_errors	AEBP1	HGNC	ENSG00000106624				136	0	0	177	29	14.0777
PKD1L1	0	genome.wustl.edu	37	7	47944049	47944049	+	Missense_Mutation	SNP	A	A	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	47944049	47944049	A	T	SNP	PKD1L1	ENST00000289672	human	ensembl	74_37	-1	known	missense	c.1857	p.D619E	0.739	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	pfam_PKD/REJ-like,pfam_PKD1_2_channel,pfam_PKD_dom,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,superfamily_PKD_dom,smart_PKD/Chitinase_dom,smart_PLAT/LH2_dom,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like	-	no_errors	PKD1L1	HGNC	ENSG00000158683				47	0	0	47	10	17.5439
ABCA13	0	genome.wustl.edu	37	7	48452060	48452060	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	48452060	48452060	C	T	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	silent	c.12339	p.T4113	0.416	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				55	0	0	72	17	19.1011
FBXL18	0	genome.wustl.edu	37	7	5521541	5521541	+	Silent	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	5521541	5521541	C	T	SNP	FBXL18	ENST00000382368	human	ensembl	74_37	-1	known	silent	c.2022	p.A674	0.899	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXL18	HGNC	ENSG00000155034				127	0	0	192	50	20.6612
CACNA2D1	0	genome.wustl.edu	37	7	81579730	81579730	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	81579730	81579730	C	T	SNP	CACNA2D1	ENST00000356253	human	ensembl	74_37	-1	known	missense	c.3290	p.G1097D	1.000	NULL	pfam_VDCC_a2/dsu,pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D1	HGNC	ENSG00000153956				35	0	0	45	6	11.7647
TSTA3	0	genome.wustl.edu	37	8	144696589	144696589	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	8	144696589	144696589	C	T	SNP	TSTA3	ENST00000425753	human	ensembl	74_37	-1	known	missense	c.499	p.A167T	0.832	pfam_Epimerase_deHydtase	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	-	no_errors	TSTA3	HGNC	ENSG00000104522				62	0	0	38	7	15.5556
LZTS1	0	genome.wustl.edu	37	8	20110844	20110844	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	8	20110844	20110844	C	T	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.598	p.V200M	1.000	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337				81	0	0	42	33	44
RAB14	0	genome.wustl.edu	37	9	123945660	123945660	+	Missense_Mutation	SNP	C	C	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	123945660	123945660	C	G	SNP	RAB14	ENST00000373840	human	ensembl	74_37	-1	known	missense	c.368	p.G123A	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB14	HGNC	ENSG00000119396				63	0	0	37	7	15.9091
STRBP	0	genome.wustl.edu	37	9	125901929	125901929	+	Missense_Mutation	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	125901929	125901929	G	T	SNP	STRBP	ENST00000348403	human	ensembl	74_37	-1	known	missense	c.1376	p.A459E	1.000	NULL	pfam_DZF,pfam_dsRNA-bd_dom,smart_DZF,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom	-	no_errors	STRBP	HGNC	ENSG00000165209				39	0	0	32	2	5.88235
FPGS	0	genome.wustl.edu	37	9	130566591	130566591	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	130566591	130566591	C	T	SNP	FPGS	ENST00000373247	human	ensembl	74_37	+1	known	nonsense	c.166	p.Q56*	1.000	superfamily_Mur_ligase_cen	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877				49	0	0	40	13	24.5283
POMT1	0	genome.wustl.edu	37	9	134398584	134398584	+	RNA	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	134398584	134398584	C	T	SNP	POMT1	ENST00000485278	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POMT1	HGNC	ENSG00000130714				8	0	0	2	5	71.4286
TTC39B	0	genome.wustl.edu	37	9	15185355	15185355	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	15185355	15185355	C	T	SNP	TTC39B	ENST00000512701	human	ensembl	74_37	-1	known	missense	c.1537	p.E513K	1.000	pfam_OMP_IML2_mit/TPR_39	pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat	-	no_errors	TTC39B	HGNC	ENSG00000155158				80	0	0	107	20	15.748
KIAA1161	0	genome.wustl.edu	37	9	34371580	34371580	+	Silent	SNP	G	G	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	34371580	34371580	G	T	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	silent	c.1260	p.R420	0.994	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				26	0	0	27	2	6.89655
MIR4477B	0	genome.wustl.edu	37	9	68415353	68415353	+	RNA	SNP	T	T	G			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	9	68415353	68415353	T	G	SNP	MIR4477B	ENST00000581659	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.189	-	-	-	no_errors	MIR4477B	HGNC	ENSG00000266017				17	0	0	27	6	18.1818
MT-ND4L	0	genome.wustl.edu	37	MT	10471	10471	+	Missense_Mutation	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	MT	10471	10471	T	C	SNP	MT-ND4L	ENST00000361335	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	NULL	NULL	pfam_NADH_UbQ_OxRdtase_chain4L/K	-	no_errors	MT-ND4L	HGNC	ENSG00000212907				113	0	0	59	30	33.7079
MT-CO1	0	genome.wustl.edu	37	MT	6261	6261	+	Missense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	MT	6261	6261	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.358	p.A120T	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804				234	0	0	30	83	73.4513
NXF2B	0	genome.wustl.edu	37	X	101624641	101624641	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	101624641	101624641	G	A	SNP	NXF2B	ENST00000372749	human	ensembl	74_37	-1	known	nonsense	c.250	p.R84*	0.000	NULL	pfam_Tap_RNA-bd,pfam_TAP_C_dom,pfam_NTF2,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF2B	HGNC	ENSG00000185945				78	0	0	102	17	14.2857
RGAG1	0	genome.wustl.edu	37	X	109697186	109697186	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	109697186	109697186	C	T	SNP	RGAG1	ENST00000465301	human	ensembl	74_37	+1	known	missense	c.3341	p.A1114V	0.842	NULL	NULL	-	no_errors	RGAG1	HGNC	ENSG00000243978				230	1	0.4329	267	55	17.0807
MSL3	0	genome.wustl.edu	37	X	11778528	11778528	+	Silent	SNP	T	T	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	11778528	11778528	T	C	SNP	MSL3	ENST00000312196	human	ensembl	74_37	+1	known	silent	c.192	p.D64	1.000	pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				39	0	0	45	16	26.2295
PNCK	0	genome.wustl.edu	37	X	152937033	152937033	+	Missense_Mutation	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	152937033	152937033	C	T	SNP	PNCK	ENST00000447676	human	ensembl	74_37	-1	known	missense	c.758	p.G253D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	PNCK	HGNC	ENSG00000130822				168	0	0	115	63	35.3933
DKC1	0	genome.wustl.edu	37	X	154002902	154002902	+	Missense_Mutation	SNP	A	A	C			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	154002902	154002902	A	C	SNP	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	missense	c.1181	p.K394T	1.000	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826				54	0	0	41	7	14.5833
FAM47A	0	genome.wustl.edu	37	X	34149084	34149084	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	34149084	34149084	G	A	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.1312	p.L438	0.142	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448				61	0	0	43	31	41.8919
FOXR2	0	genome.wustl.edu	37	X	55650539	55650539	+	Missense_Mutation	SNP	C	C	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	55650539	55650539	C	A	SNP	FOXR2	ENST00000339140	human	ensembl	74_37	+1	known	missense	c.395	p.P132Q	0.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXR2	HGNC	ENSG00000189299				40	0	0	31	21	40.3846
NAP1L2	0	genome.wustl.edu	37	X	72433489	72433489	+	Silent	SNP	G	G	A			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	72433489	72433489	G	A	SNP	NAP1L2	ENST00000373517	human	ensembl	74_37	-1	known	silent	c.840	p.G280	0.995	pfam_NAP_family	pfam_NAP_family	-	no_errors	NAP1L2	HGNC	ENSG00000186462				48	0	0	27	25	48.0769
XIST	0	genome.wustl.edu	37	X	73069940	73069940	+	RNA	SNP	C	C	T			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	73069940	73069940	C	T	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.958	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				47	0	0	73	14	16.092
SRRM1	0	genome.wustl.edu	37	1	24997907	24997909	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	24997907	24997909	AAG	-	DEL	SRRM1	ENST00000447431	human	ensembl	74_37	+1	known	in_frame_del	c.2467_2469	p.K826in_frame_del	1.000:1.000:1.000	NULL	pfam_PWI_dom,superfamily_PWI_dom,smart_PWI_dom	-	no_errors	SRRM1	HGNC	ENSG00000133226				41	0	0	38	7	15.5556
PGM1	0	genome.wustl.edu	37	1	64089203	64089203	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	1	64089203	64089203	T	-	DEL	PGM1	ENST00000371083	human	ensembl	74_37	+1	known	frame_shift_del	c.72	p.F25fs	0.161	superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,pfam_A-D-PHexomutase_C,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM1	HGNC	ENSG00000079739				140	0	0	160	27	14.4385
SLITRK5	0	genome.wustl.edu	37	13	88327806	88327806	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	13	88327806	88327806	G	-	DEL	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	frame_shift_del	c.163	p.E55fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				91	0	0	119	13	9.84848
BLM	0	genome.wustl.edu	37	15	91312405	91312406	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	15	91312405	91312406	TA	-	DEL	BLM	ENST00000355112	human	ensembl	74_37	+1	known	frame_shift_del	c.2350_2351	p.Y784fs	1.000:1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd,tigrfam_DNA_helicase_ATP-dep_RecQ	pfam_RQC_domain,pfam_BDHCT,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_HRDC-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	BLM	HGNC	ENSG00000197299				105	0	0	101	15	12.931
TP53	0	genome.wustl.edu	37	17	7574012	7574012	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	17	7574012	7574012	C	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.1015	p.E339fs	0.996	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				45	0	0	22	12	35.2941
GRIN3B	0	genome.wustl.edu	37	19	1009186	1009188	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	19	1009186	1009188	AGC	-	DEL	GRIN3B	ENST00000234389	human	ensembl	74_37	+1	known	in_frame_del	c.2717_2719	p.Q910in_frame_del	0.000:0.001:0.016	NULL	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN3B	HGNC	ENSG00000116032				13	0	0	8	3	27.2727
CERK	0	genome.wustl.edu	37	22	47089392	47089393	+	Frame_Shift_Ins	INS	-	-	CAAAG			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	22	47089392	47089393	-	CAAAG	INS	CERK	ENST00000216264	human	ensembl	74_37	-1	known	frame_shift_ins	c.1058_1057	p.V353fs	0.852:0.793	NULL	pfam_Diacylglycerol_kinase_cat_dom,superfamily_ATP-NAD_kinase_PpnK-typ,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	CERK	HGNC	ENSG00000100422				61	0	0	68	10	12.8205
CAMK4	0	genome.wustl.edu	37	5	110560138	110560140	+	RNA	DEL	GCG	GCG	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	5	110560138	110560140	GCG	-	DEL	CAMK4	ENST00000509408	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.980:0.981:0.978	-	-	-	no_errors	CAMK4	HGNC	ENSG00000152495				16	0	0	8	2	20
DLD	0	genome.wustl.edu	37	7	107558368	107558368	+	Splice_Site	DEL	G	G	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	7	107558368	107558368	G	-	DEL	DLD	ENST00000205402	human	ensembl	74_37	+1	known	splice_site_del	c.1237-1	e12-1	1.000	-	-	-	no_errors	DLD	HGNC	ENSG00000091140				63	0	0	56	24	30
SFTPC	0	genome.wustl.edu	37	8	22021060	22021061	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	8	22021060	22021061	GT	-	DEL	SFTPC	ENST00000522109	human	ensembl	74_37	+1	putative	frame_shift_del	c.436_437	p.C149fs	1.000:0.997	smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	pfam_Surfactant_protein_propep,pfam_BRICHOS_dom,smart_Pulm_surfact_AP,pfscan_BRICHOS_dom	-	no_errors	SFTPC	HGNC	ENSG00000168484				46	0	0	33	2	5.71429
PRICKLE3	0	genome.wustl.edu	37	X	49040116	49040117	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-CD-A4MH-01A-11D-A25D-08	TCGA-CD-A4MH-10A-01D-A25E-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1490fffe-b92e-4616-bc91-f194f45239d2	f30b0ef5-362d-499f-82cb-d46b13803639	X	49040116	49040117	GT	-	DEL	PRICKLE3	ENST00000536904	human	ensembl	74_37	-1	known	frame_shift_del	c.179_178	p.T60fs	0.149:0.119	NULL	pfam_Znf_LIM,pfam_PET_domain,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE3	HGNC	ENSG00000012211				32	0	0	27	4	12.9032
