Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FCRL3	0	genome.wustl.edu	37	1	157665941	157665941	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	157665941	157665941	C	T	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	missense	c.1021	p.A341T	0.001	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856				165	0	0	79	15	15.9574
OR6K2	0	genome.wustl.edu	37	1	158669774	158669774	+	Silent	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	158669774	158669774	C	T	SNP	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	silent	c.669	p.V223	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171				62	0	0	59	5	7.8125
CROCCP2	0	genome.wustl.edu	37	1	16946437	16946437	+	RNA	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	16946437	16946437	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				28	0	0	17	8	32
RABGAP1L	0	genome.wustl.edu	37	1	174926639	174926639	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	174926639	174926639	A	G	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.2386	p.M796V	0.980	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061				112	0	0	55	8	12.6984
SMYD3	0	genome.wustl.edu	37	1	245927347	245927347	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	245927347	245927347	C	G	SNP	SMYD3	ENST00000388985	human	ensembl	74_37	-1	known	missense	c.1181	p.R394T	0.987	NULL	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420				120	0	0	79	11	12.2222
SNIP1	0	genome.wustl.edu	37	1	38003386	38003386	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	1	38003386	38003386	T	A	SNP	SNIP1	ENST00000296215	human	ensembl	74_37	-1	known	missense	c.1154	p.E385V	1.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	SNIP1	HGNC	ENSG00000163877				257	0	0	114	28	19.7183
CUBN	0	genome.wustl.edu	37	10	17152954	17152954	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	10	17152954	17152954	T	A	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	missense	c.979	p.T327S	1.000	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611				136	0	0	65	25	27.7778
GDF10	0	genome.wustl.edu	37	10	48438519	48438519	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	10	48438519	48438519	G	A	SNP	GDF10	ENST00000224605	human	ensembl	74_37	-1	known	silent	c.192	p.A64	0.001	pirsf_BMP3/GDF10	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,pirsf_BMP3/GDF10	-	no_errors	GDF10	HGNC	ENSG00000107623				13	0	0	8	3	27.2727
A1CF	0	genome.wustl.edu	37	10	52596017	52596017	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	10	52596017	52596017	C	A	SNP	A1CF	ENST00000282641	human	ensembl	74_37	-1	known	missense	c.421	p.G141W	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584				143	0	0	90	27	23.0769
ATM	0	genome.wustl.edu	37	11	108218089	108218089	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	108218089	108218089	C	G	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	missense	c.8668	p.L2890V	0.996	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				77	0	0	49	15	23.4375
PPP2R1B	0	genome.wustl.edu	37	11	111613304	111613304	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	111613304	111613304	T	A	SNP	PPP2R1B	ENST00000311129	human	ensembl	74_37	-1	known	missense	c.1640	p.N547I	1.000	superfamily_ARM-type_fold,pfscan_HEAT_type_2	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP2R1B	HGNC	ENSG00000137713				75	0	0	38	11	22.449
NLRX1	0	genome.wustl.edu	37	11	119045756	119045756	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	119045756	119045756	G	A	SNP	NLRX1	ENST00000292199	human	ensembl	74_37	+1	known	missense	c.1444	p.V482M	0.985	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase	-	no_errors	NLRX1	HGNC	ENSG00000160703				73	0	0	52	10	16.129
LOC440040	0	genome.wustl.edu	37	11	49597912	49597912	+	RNA	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	49597912	49597912	G	A	SNP	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035				61	0	0	43	7	14
ALDH3B2	0	genome.wustl.edu	37	11	67431927	67431927	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	67431927	67431927	G	C	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	missense	c.813	p.I271M	0.181	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				211	1	0.471698	154	9	5.52147
ALDH3B2	0	genome.wustl.edu	37	11	67431978	67431978	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	11	67431978	67431978	G	C	SNP	ALDH3B2	ENST00000349015	human	ensembl	74_37	-1	known	missense	c.762	p.I254M	1.000	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH	-	no_errors	ALDH3B2	HGNC	ENSG00000132746				128	0	0	103	7	6.36364
UBC	0	genome.wustl.edu	37	12	125398003	125398003	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	12	125398003	125398003	C	G	SNP	UBC	ENST00000339647	human	ensembl	74_37	-1	known	missense	c.315	p.K105N	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991				458	0	0	252	54	17.6471
IL23A	0	genome.wustl.edu	37	12	56733273	56733273	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	12	56733273	56733273	G	A	SNP	IL23A	ENST00000228534	human	ensembl	74_37	+1	known	missense	c.226	p.G76S	1.000	pfam_IL-6/IL-23/GCSF/MGF,superfamily_4_helix_cytokine-like_core	pfam_IL-6/IL-23/GCSF/MGF,superfamily_4_helix_cytokine-like_core	-	no_errors	IL23A	HGNC	ENSG00000110944				92	0	0	72	17	19.1011
ATP5B	0	genome.wustl.edu	37	12	57033084	57033084	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	12	57033084	57033084	T	C	SNP	ATP5B	ENST00000262030	human	ensembl	74_37	-1	known	missense	c.1295	p.K432R	1.000	pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,tigrfam_ATPase_F1-cplx_bsu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,smart_AAA+_ATPase,tigrfam_ATPase_F1-cplx_bsu	-	no_errors	ATP5B	HGNC	ENSG00000110955				94	0	0	56	17	23.2877
NALCN	0	genome.wustl.edu	37	13	101936302	101936302	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	13	101936302	101936302	G	A	SNP	NALCN	ENST00000251127	human	ensembl	74_37	-1	known	silent	c.1116	p.R372	0.233	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452				87	0	0	40	16	28.5714
TUBA3C	0	genome.wustl.edu	37	13	19751365	19751365	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	13	19751365	19751365	G	A	SNP	TUBA3C	ENST00000400113	human	ensembl	74_37	-1	known	missense	c.758	p.T253M	1.000	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033				244	0	0	144	26	15.2941
NBEA	0	genome.wustl.edu	37	13	35770041	35770041	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	13	35770041	35770041	A	C	SNP	NBEA	ENST00000310336	human	ensembl	74_37	+1	known	missense	c.4968	p.E1656D	0.983	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915				110	0	0	196	19	8.83721
DNM1P47	0	genome.wustl.edu	37	15	102292785	102292785	+	RNA	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	15	102292785	102292785	C	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				35	0	0	20	3	13.0435
NUTM1	0	genome.wustl.edu	37	15	34638164	34638164	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	15	34638164	34638164	G	C	SNP	NUTM1	ENST00000537011	human	ensembl	74_37	+1	putative	missense	c.28	p.D10H	0.398	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507				103	0	0	75	21	21.875
MYO1E	0	genome.wustl.edu	37	15	59523937	59523937	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	15	59523937	59523937	G	A	SNP	MYO1E	ENST00000288235	human	ensembl	74_37	-1	known	silent	c.474	p.N158	0.649	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,pfam_SH3_domain,pfam_SH3_2,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_SH3_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_SH3_domain,prints_Myosin_head_motor_dom,prints_SH3_domain	-	no_errors	MYO1E	HGNC	ENSG00000157483				107	0	0	59	22	27.1605
HCN4	0	genome.wustl.edu	37	15	73635776	73635776	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	15	73635776	73635776	G	A	SNP	HCN4	ENST00000261917	human	ensembl	74_37	-1	known	missense	c.1159	p.R387C	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622				69	0	0	48	15	23.8095
ATF7IP2	0	genome.wustl.edu	37	16	10567833	10567833	+	Silent	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	16	10567833	10567833	C	T	SNP	ATF7IP2	ENST00000356427	human	ensembl	74_37	+1	known	silent	c.1536	p.S512	0.011	NULL	superfamily_Fibronectin_type3	-	no_errors	ATF7IP2	HGNC	ENSG00000166669				24	0	0	18	2	10
ABCC11	0	genome.wustl.edu	37	16	48201223	48201223	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	16	48201223	48201223	C	T	SNP	ABCC11	ENST00000356608	human	ensembl	74_37	-1	known	missense	c.4111	p.A1371T	0.301	pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC11	HGNC	ENSG00000121270				199	0	0	152	24	13.6364
TBC1D3P5	0	genome.wustl.edu	37	17	25750994	25750994	+	RNA	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	17	25750994	25750994	G	C	SNP	TBC1D3P5	ENST00000586223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.830	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433				52	0	0	35	10	22.2222
USP6	0	genome.wustl.edu	37	17	5033935	5033935	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	17	5033935	5033935	G	A	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	silent	c.111	p.E37	0.731	NULL	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204				176	1	0.564972	102	49	32.4503
KIF2B	0	genome.wustl.edu	37	17	51900727	51900727	+	Silent	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	17	51900727	51900727	C	T	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	silent	c.333	p.T111	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200				226	0	0	140	37	20.904
C1QTNF1	0	genome.wustl.edu	37	17	77043955	77043955	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	17	77043955	77043955	A	G	SNP	C1QTNF1	ENST00000354124	human	ensembl	74_37	+1	known	missense	c.661	p.I221V	0.997	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF1	HGNC	ENSG00000173918				195	0	0	108	23	17.5573
BAIAP2	0	genome.wustl.edu	37	17	79077849	79077849	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	17	79077849	79077849	C	T	SNP	BAIAP2	ENST00000321300	human	ensembl	74_37	+1	known	missense	c.1007	p.S336F	1.000	NULL	pfam_IRSp53/MIM_homology_IMD,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	BAIAP2	HGNC	ENSG00000175866				163	0	0	106	21	16.5354
ROCK1	0	genome.wustl.edu	37	18	18546911	18546911	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	18	18546911	18546911	G	C	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	missense	c.3319	p.P1107A	1.000	pirsf_Rho-assoc_coiled-coil_kin	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Rho-bd_dom,pfam_HR1_rho-bd,pfam_Pleckstrin_homology,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,pirsf_Rho-assoc_coiled-coil_kin,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	ROCK1	HGNC	ENSG00000067900				276	0	0	168	26	13.4021
DCC	0	genome.wustl.edu	37	18	50734076	50734076	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	18	50734076	50734076	A	G	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1750	p.K584E	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				162	0	0	72	7	8.86076
EPB41L3	0	genome.wustl.edu	37	18	5398076	5398076	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	18	5398076	5398076	G	A	SNP	EPB41L3	ENST00000341928	human	ensembl	74_37	-1	known	nonsense	c.2416	p.R806*	0.860	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB_dom,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L3	HGNC	ENSG00000082397				501	0	0	255	81	24.1071
BRD4	0	genome.wustl.edu	37	19	15379809	15379809	+	Silent	SNP	T	T	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	15379809	15379809	T	A	SNP	BRD4	ENST00000263377	human	ensembl	74_37	-1	known	silent	c.330	p.I110	1.000	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BRD4	HGNC	ENSG00000141867				156	0	0	122	15	10.9489
DDA1	0	genome.wustl.edu	37	19	17424912	17424912	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	17424912	17424912	G	A	SNP	DDA1	ENST00000359866	human	ensembl	74_37	+1	known	silent	c.84	p.S28	1.000	pfam_Ub_ligase_Det1/DDB1-complexing	pfam_Ub_ligase_Det1/DDB1-complexing	-	no_errors	DDA1	HGNC	ENSG00000130311				149	0	0	89	20	18.3486
FGF21	0	genome.wustl.edu	37	19	49260235	49260235	+	Silent	SNP	C	C	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	49260235	49260235	C	A	SNP	FGF21	ENST00000222157	human	ensembl	74_37	+1	known	silent	c.288	p.V96	0.407	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF21	HGNC	ENSG00000105550				296	1	0.3367	244	28	10.2941
PTPRS	0	genome.wustl.edu	37	19	5220015	5220015	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	5220015	5220015	G	A	SNP	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	missense	c.3703	p.R1235W	0.993	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426				148	0	0	81	13	13.8298
ZNF841	0	genome.wustl.edu	37	19	52569335	52569335	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	52569335	52569335	A	C	SNP	ZNF841	ENST00000389534	human	ensembl	74_37	-1	known	missense	c.1800	p.N600K	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF841	HGNC	ENSG00000197608				239	1	0.416667	140	28	16.6667
GP6	0	genome.wustl.edu	37	19	55525822	55525822	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	19	55525822	55525822	G	A	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	silent	c.1491	p.H497	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053				147	0	0	103	25	19.5312
LIMS1	0	genome.wustl.edu	37	2	109293101	109293101	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	2	109293101	109293101	C	G	SNP	LIMS1	ENST00000542845	human	ensembl	74_37	+1	known	missense	c.871	p.H291D	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS1	HGNC	ENSG00000169756				32	0	0	19	3	13.6364
LRP2	0	genome.wustl.edu	37	2	170028593	170028593	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	2	170028593	170028593	C	T	SNP	LRP2	ENST00000263816	human	ensembl	74_37	-1	known	missense	c.11195	p.C3732Y	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479				151	0	0	78	27	25.7143
SP3	0	genome.wustl.edu	37	2	174820642	174820642	+	Nonsense_Mutation	SNP	C	C	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	2	174820642	174820642	C	A	SNP	SP3	ENST00000310015	human	ensembl	74_37	-1	known	nonsense	c.598	p.E200*	1.000	superfamily_Galactose-bd-like	pfam_Znf_C2H2,superfamily_Galactose-bd-like,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP3	HGNC	ENSG00000172845				601	0	0	423	34	7.43982
ZNF513	0	genome.wustl.edu	37	2	27601052	27601052	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	2	27601052	27601052	C	A	SNP	ZNF513	ENST00000323703	human	ensembl	74_37	-1	known	missense	c.986	p.S329I	0.972	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF513	HGNC	ENSG00000163795				90	0	0	43	14	24.5614
EML4	0	genome.wustl.edu	37	2	42490372	42490372	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	2	42490372	42490372	T	A	SNP	EML4	ENST00000318522	human	ensembl	74_37	+1	known	missense	c.567	p.D189E	1.000	NULL	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML4	HGNC	ENSG00000143924				72	0	0	43	8	15.6863
C20orf85	0	genome.wustl.edu	37	20	56730598	56730598	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	20	56730598	56730598	G	A	SNP	C20orf85	ENST00000371168	human	ensembl	74_37	+1	known	silent	c.225	p.P75	0.026	NULL	NULL	-	no_errors	C20orf85	HGNC	ENSG00000124237				118	0	0	101	14	12.1739
KRTAP11-1	0	genome.wustl.edu	37	21	32253653	32253653	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	21	32253653	32253653	G	A	SNP	KRTAP11-1	ENST00000332378	human	ensembl	74_37	-1	known	missense	c.191	p.T64I	0.007	pfam_KRTAP_PMG	pfam_KRTAP_PMG	-	no_errors	KRTAP11-1	HGNC	ENSG00000182591				116	0	0	88	9	9.27835
DGCR2	0	genome.wustl.edu	37	22	19035936	19035936	+	RNA	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	22	19035936	19035936	C	T	SNP	DGCR2	ENST00000608548	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGCR2	HGNC	ENSG00000070413				271	0	0	123	36	22.6415
MYLK	0	genome.wustl.edu	37	3	123366073	123366073	+	Silent	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	3	123366073	123366073	C	T	SNP	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	silent	c.4617	p.E1539	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	MYLK	HGNC	ENSG00000065534				72	0	0	41	10	19.6078
GOLGA4	0	genome.wustl.edu	37	3	37370460	37370460	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	3	37370460	37370460	C	G	SNP	GOLGA4	ENST00000361924	human	ensembl	74_37	+1	known	missense	c.6068	p.A2023G	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674				88	0	0	41	8	16.3265
TERT	0	genome.wustl.edu	37	5	1272312	1272312	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	1272312	1272312	G	A	SNP	TERT	ENST00000310581	human	ensembl	74_37	-1	known	silent	c.2370	p.V790	0.662	pfam_RVT,pfscan_RVT	pfam_Telomerase_RBD,pfam_RVT,smart_Telomerase_RBD,pfscan_RVT,prints_Telomerase_RT	-	no_errors	TERT	HGNC	ENSG00000164362				37	0	0	29	6	17.1429
P4HA2	0	genome.wustl.edu	37	5	131539839	131539839	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	131539839	131539839	G	A	SNP	P4HA2	ENST00000166534	human	ensembl	74_37	-1	known	nonsense	c.1087	p.R363*	1.000	smart_Pro_4_hyd_alph	pfam_Pro_4_hyd_alph_N,pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	P4HA2	HGNC	ENSG00000072682				200	1	0.497512	89	28	23.9316
PCDHA11	0	genome.wustl.edu	37	5	140250842	140250842	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	140250842	140250842	G	A	SNP	PCDHA11	ENST00000398640	human	ensembl	74_37	+1	known	silent	c.2154	p.T718	0.015	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA11	HGNC	ENSG00000249158				100	0	0	48	20	29.4118
FAM153A	0	genome.wustl.edu	37	5	177177990	177177990	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	177177990	177177990	C	T	SNP	FAM153A	ENST00000503845	human	ensembl	74_37	-1	known	missense	c.95	p.R32H	0.000	NULL	NULL	-	no_errors	FAM153A	HGNC	ENSG00000170074				145	0	0	99	57	36.5385
JMY	0	genome.wustl.edu	37	5	78595999	78595999	+	Silent	SNP	A	A	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	78595999	78595999	A	G	SNP	JMY	ENST00000396137	human	ensembl	74_37	+1	known	silent	c.1551	p.T517	1.000	NULL	pfscan_WH2_dom	-	no_errors	JMY	HGNC	ENSG00000152409				163	0	0	117	12	9.30233
RASA1	0	genome.wustl.edu	37	5	86670727	86670727	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	5	86670727	86670727	G	A	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.2005	p.D669N	1.000	superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				92	0	0	56	10	15.1515
ARMC2	0	genome.wustl.edu	37	6	109286202	109286202	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	6	109286202	109286202	G	T	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.2305	p.D769Y	1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				372	1	0.268097	270	53	16.4087
SCUBE3	0	genome.wustl.edu	37	6	35209384	35209384	+	Silent	SNP	C	C	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	6	35209384	35209384	C	A	SNP	SCUBE3	ENST00000394681	human	ensembl	74_37	+1	known	silent	c.1308	p.G436	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Thrombomodulin	-	no_errors	SCUBE3	HGNC	ENSG00000146197				233	0	0	133	36	21.3018
HIP1	0	genome.wustl.edu	37	7	75186058	75186058	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	7	75186058	75186058	G	A	SNP	HIP1	ENST00000336926	human	ensembl	74_37	-1	known	missense	c.1639	p.R547W	0.689	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1	HGNC	ENSG00000127946				204	0	0	155	25	13.8889
ZNF804B	0	genome.wustl.edu	37	7	88964359	88964359	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	7	88964359	88964359	T	C	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.2063	p.V688A	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348				100	0	0	107	14	11.5702
LY6K	0	genome.wustl.edu	37	8	143784759	143784759	+	Silent	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	8	143784759	143784759	C	T	SNP	LY6K	ENST00000561179	human	ensembl	74_37	+1	known	silent	c.642	p.A214	0.000	NULL	NULL	-	no_errors	LY6K	HGNC	ENSG00000160886				39	0	0	31	6	16.2162
CPSF1	0	genome.wustl.edu	37	8	145625082	145625082	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	8	145625082	145625082	C	T	SNP	CPSF1	ENST00000349769	human	ensembl	74_37	-1	known	missense	c.1138	p.G380R	0.998	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	CPSF1	HGNC	ENSG00000071894				31	0	0	14	2	12.5
KIAA1429	0	genome.wustl.edu	37	8	95524295	95524295	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	8	95524295	95524295	G	C	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	missense	c.2774	p.P925R	0.993	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944				54	0	0	39	5	11.3636
DFNB31	0	genome.wustl.edu	37	9	117240980	117240980	+	Silent	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	9	117240980	117240980	G	A	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	silent	c.690	p.T230	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397				51	0	0	21	6	22.2222
FAM166A	0	genome.wustl.edu	37	9	140140109	140140109	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	9	140140109	140140109	A	T	SNP	FAM166A	ENST00000344774	human	ensembl	74_37	-1	known	missense	c.253	p.Y85N	0.813	NULL	pfam_UPF0573/UPF0605	-	no_errors	FAM166A	HGNC	ENSG00000188163				93	0	0	65	35	35
KIAA1045	0	genome.wustl.edu	37	9	34976209	34976209	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	9	34976209	34976209	C	T	SNP	KIAA1045	ENST00000242315	human	ensembl	74_37	+1	known	missense	c.625	p.R209W	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	KIAA1045	HGNC	ENSG00000122733				104	0	0	67	13	16.25
ELF4	0	genome.wustl.edu	37	X	129206276	129206276	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	X	129206276	129206276	G	A	SNP	ELF4	ENST00000308167	human	ensembl	74_37	-1	known	nonsense	c.457	p.Q153*	0.991	NULL	pfam_TF_Elf_N,pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF4	HGNC	ENSG00000102034				297	0	0	173	16	8.46561
CCDC22	0	genome.wustl.edu	37	X	49104740	49104740	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	X	49104740	49104740	C	T	SNP	CCDC22	ENST00000376227	human	ensembl	74_37	+1	known	missense	c.1181	p.P394L	0.998	pfam_DUF812	pfam_DUF812	-	no_errors	CCDC22	HGNC	ENSG00000101997				51	0	0	22	7	24.1379
GSPT2	0	genome.wustl.edu	37	X	51487601	51487601	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	X	51487601	51487601	T	G	SNP	GSPT2	ENST00000340438	human	ensembl	74_37	+1	known	missense	c.879	p.S293R	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom	-	no_errors	GSPT2	HGNC	ENSG00000189369				480	1	0.2079	324	70	17.7665
UBA1	0	genome.wustl.edu	37	X	47061547	47061554	+	Splice_Site	DEL	CTCTGTAG	CTCTGTAG	-			TCGA-CG-4301-01A-01D-1158-08	TCGA-CG-4301-10A-01D-1158-08	CTCTGTAG	CTCTGTAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c2aaa578-47b2-4cba-8014-39c1f310c0bf	7a4e827f-75e1-4b82-b8e1-cc7077849fba	X	47061547	47061554	CTCTGTAG	-	DEL	UBA1	ENST00000335972	human	ensembl	74_37	+1	known	splice_site_del	c.812-8_812-1	e8-1	0.000:0.000:0.000:0.000:0.000:0.952:1.000:1.000	-	-	-	no_errors	UBA1	HGNC	ENSG00000130985				49	0	0	28	5	15.1515
