Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ATXN7L2	0	genome.wustl.edu	37	1	110028719	110028719	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	110028719	110028719	G	A	SNP	ATXN7L2	ENST00000369870	human	ensembl	74_37	+1	known	silent	c.168	p.L56	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L2	HGNC	ENSG00000162650				113	0	0	101	13	11.4035
SPTA1	0	genome.wustl.edu	37	1	158589036	158589036	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	158589036	158589036	A	G	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.6506	p.F2169S	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554				201	0	0	248	25	9.15751
BRINP3	0	genome.wustl.edu	37	1	190195436	190195436	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	190195436	190195436	A	C	SNP	BRINP3	ENST00000367462	human	ensembl	74_37	-1	known	missense	c.737	p.L246R	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP3	HGNC	ENSG00000162670				42	0	0	86	7	7.52688
LDLRAD2	0	genome.wustl.edu	37	1	22141037	22141037	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	22141037	22141037	C	T	SNP	LDLRAD2	ENST00000344642	human	ensembl	74_37	+1	known	missense	c.232	p.R78C	1.000	superfamily_CUB_dom	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,superfamily_CUB_dom,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	-	no_errors	LDLRAD2	HGNC	ENSG00000187942				108	1	0.917431	93	5	5.10204
ACTN2	0	genome.wustl.edu	37	1	236881196	236881196	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	236881196	236881196	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	silent	c.165	p.A55	0.917	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522				74	0	0	56	6	9.67742
TRIM62	0	genome.wustl.edu	37	1	33612785	33612785	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	33612785	33612785	C	T	SNP	TRIM62	ENST00000291416	human	ensembl	74_37	-1	known	missense	c.1421	p.R474H	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM62	HGNC	ENSG00000116525				159	0	0	129	14	9.79021
CSMD2	0	genome.wustl.edu	37	1	34312507	34312507	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	34312507	34312507	G	A	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	silent	c.1011	p.R337	0.212	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904				92	0	0	90	8	8.16327
PLEKHG5	0	genome.wustl.edu	37	1	6530360	6530360	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	6530360	6530360	G	A	SNP	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	missense	c.1973	p.P658L	0.997	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680				123	0	0	87	18	17.1429
MYO3A	0	genome.wustl.edu	37	10	26457674	26457674	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	10	26457674	26457674	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.3145	p.N1049H	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777				90	0	0	91	17	15.7407
HINFP	0	genome.wustl.edu	37	11	119005167	119005167	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	11	119005167	119005167	C	T	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	missense	c.1513	p.L505F	0.097	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273				55	0	0	67	6	8.21918
KIAA1549L	0	genome.wustl.edu	37	11	33667477	33667477	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	11	33667477	33667477	G	A	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	silent	c.4782	p.S1594	0.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427				31	0	0	36	4	10
CCDC81	0	genome.wustl.edu	37	11	86123466	86123466	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	11	86123466	86123466	C	T	SNP	CCDC81	ENST00000445632	human	ensembl	74_37	+1	known	missense	c.1256	p.A419V	0.460	NULL	superfamily_IHF-like_DNA-bd_dom	-	no_errors	CCDC81	HGNC	ENSG00000149201				220	0	0	217	26	10.6996
TBX5	0	genome.wustl.edu	37	12	114841689	114841689	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	12	114841689	114841689	G	A	SNP	TBX5	ENST00000310346	human	ensembl	74_37	-1	known	silent	c.15	p.D5	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225				64	0	0	52	5	8.77193
FAM186B	0	genome.wustl.edu	37	12	49993507	49993507	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	12	49993507	49993507	C	T	SNP	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	missense	c.1916	p.G639E	0.036	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436				160	0	0	165	17	9.34066
NCAPD2	0	genome.wustl.edu	37	12	6637448	6637448	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	12	6637448	6637448	C	T	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	missense	c.3253	p.R1085C	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292				600	0	0	540	67	11.0379
COG3	0	genome.wustl.edu	37	13	46090314	46090314	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	13	46090314	46090314	C	T	SNP	COG3	ENST00000349995	human	ensembl	74_37	+1	known	missense	c.1846	p.L616F	1.000	NULL	pfam_COG_su3,superfamily_Cullin_repeat-like_dom	-	no_errors	COG3	HGNC	ENSG00000136152				45	0	0	65	6	8.4507
SLITRK5	0	genome.wustl.edu	37	13	88328449	88328449	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	13	88328449	88328449	G	A	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	missense	c.806	p.R269H	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300				253	0	0	250	22	8.08824
EML1	0	genome.wustl.edu	37	14	100377910	100377910	+	Silent	SNP	G	G	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	100377910	100377910	G	T	SNP	EML1	ENST00000334192	human	ensembl	74_37	+1	known	silent	c.1548	p.T516	0.005	superfamily_Quinonprotein_ADH-like_supfam,pfscan_WD40_repeat_dom	pfam_HELP,pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML1	HGNC	ENSG00000066629				85	0	0	93	8	7.92079
MIR495	0	genome.wustl.edu	37	14	101500139	101500139	+	RNA	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	101500139	101500139	C	T	SNP	MIR495	ENST00000385010	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR495	HGNC	ENSG00000207743				35	0	0	38	5	11.6279
TECPR2	0	genome.wustl.edu	37	14	102906877	102906877	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	102906877	102906877	G	C	SNP	TECPR2	ENST00000359520	human	ensembl	74_37	+1	known	missense	c.2683	p.V895L	0.990	superfamily_RCC1/BLIP-II,smart_Beta-propeller_rpt_TECPR	pfam_Beta-propeller_rpt_TECPR,superfamily_WD40_repeat_dom,superfamily_RCC1/BLIP-II,smart_WD40_repeat,smart_Beta-propeller_rpt_TECPR	-	no_errors	TECPR2	HGNC	ENSG00000196663				189	0	0	171	15	8.06452
PPP1R13B	0	genome.wustl.edu	37	14	104212794	104212794	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	104212794	104212794	C	T	SNP	PPP1R13B	ENST00000202556	human	ensembl	74_37	-1	known	missense	c.1066	p.G356R	1.000	NULL	pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PPP1R13B	HGNC	ENSG00000088808				91	0	0	95	6	5.94059
TTLL5	0	genome.wustl.edu	37	14	76147917	76147917	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	76147917	76147917	C	T	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	nonsense	c.211	p.R71*	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				220	0	0	255	14	5.20446
CEP128	0	genome.wustl.edu	37	14	81209494	81209494	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	14	81209494	81209494	A	G	SNP	CEP128	ENST00000281129	human	ensembl	74_37	-1	known	missense	c.2731	p.S911P	0.329	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629				147	0	0	201	21	9.45946
SKOR1	0	genome.wustl.edu	37	15	68118709	68118709	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	15	68118709	68118709	C	T	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	silent	c.543	p.F181	1.000	pfam_c-SKI_SMAD4-bd_dom,superfamily_SAND_dom-like	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779				171	0	0	157	13	7.64706
EFTUD1	0	genome.wustl.edu	37	15	82532780	82532780	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	15	82532780	82532780	G	C	SNP	EFTUD1	ENST00000268206	human	ensembl	74_37	-1	known	missense	c.495	p.H165Q	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_EFG_III-V,superfamily_Transl_B-barrel,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFTUD1	HGNC	ENSG00000140598				26	0	0	31	6	16.2162
FHOD1	0	genome.wustl.edu	37	16	67264254	67264254	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	16	67264254	67264254	C	T	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.3014	p.R1005H	1.000	smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723				111	0	0	138	17	10.9677
PHLPP2	0	genome.wustl.edu	37	16	71715755	71715755	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	16	71715755	71715755	C	G	SNP	PHLPP2	ENST00000356272	human	ensembl	74_37	-1	known	missense	c.789	p.E263D	1.000	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom	-	no_errors	PHLPP2	HGNC	ENSG00000040199				160	0	0	194	17	8.05687
CNTNAP4	0	genome.wustl.edu	37	16	76389294	76389294	+	Silent	SNP	C	C	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	16	76389294	76389294	C	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	silent	c.273	p.T91	0.087	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910				79	0	0	75	17	18.4783
SMAD2	0	genome.wustl.edu	37	18	45368211	45368211	+	Nonsense_Mutation	SNP	G	G	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	18	45368211	45368211	G	C	SNP	SMAD2	ENST00000262160	human	ensembl	74_37	-1	known	nonsense	c.1391	p.S464*	1.000	pfscan_SMAD_dom_Dwarfin-type	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD2	HGNC	ENSG00000175387				87	0	0	82	11	11.828
L3MBTL4	0	genome.wustl.edu	37	18	6046733	6046733	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	18	6046733	6046733	C	T	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.1465	p.G489S	0.403	NULL	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				82	0	0	84	6	6.66667
SALL3	0	genome.wustl.edu	37	18	76755232	76755232	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	18	76755232	76755232	C	T	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.3241	p.P1081S	0.996	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463				54	0	0	47	6	11.3208
ICAM5	0	genome.wustl.edu	37	19	10401793	10401793	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	19	10401793	10401793	C	T	SNP	ICAM5	ENST00000221980	human	ensembl	74_37	+1	known	missense	c.128	p.A43V	1.000	pfam_ICAM_N,prints_ICAM_VCAM_N	pfam_Ig_I-set,pfam_ICAM_N,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom,prints_ICAM_VCAM_N,prints_ICAM	-	no_errors	ICAM5	HGNC	ENSG00000105376				54	0	0	53	5	8.62069
CILP2	0	genome.wustl.edu	37	19	19656264	19656264	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	19	19656264	19656264	C	T	SNP	CILP2	ENST00000291495	human	ensembl	74_37	+1	known	silent	c.2910	p.Y970	0.836	NULL	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,superfamily_Carb-bd-like_fold,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	CILP2	HGNC	ENSG00000160161				60	0	0	51	5	8.92857
SIGLEC12	0	genome.wustl.edu	37	19	52001483	52001483	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	19	52001483	52001483	G	T	SNP	SIGLEC12	ENST00000291707	human	ensembl	74_37	-1	known	missense	c.1194	p.H398Q	0.049	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC12	HGNC	ENSG00000254521				60	0	0	62	7	10.1449
LIMS2	0	genome.wustl.edu	37	2	128399649	128399649	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	128399649	128399649	G	A	SNP	LIMS2	ENST00000324938	human	ensembl	74_37	-1	known	missense	c.707	p.A236V	1.000	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pirsf_PINCH,pfscan_Znf_LIM	-	no_errors	LIMS2	HGNC	ENSG00000072163				42	0	0	35	4	10.2564
GPR17	0	genome.wustl.edu	37	2	128409297	128409297	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	128409297	128409297	G	A	SNP	GPR17	ENST00000272644	human	ensembl	74_37	+1	known	missense	c.1072	p.E358K	1.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230				208	0	0	158	14	8.13953
TMEFF2	0	genome.wustl.edu	37	2	193059095	193059095	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	193059095	193059095	G	A	SNP	TMEFF2	ENST00000272771	human	ensembl	74_37	-1	known	silent	c.156	p.T52	1.000	NULL	pfam_Kazal_dom,smart_Kazal_dom,pfscan_EG-like_dom	-	no_errors	TMEFF2	HGNC	ENSG00000144339				225	0	0	234	31	11.6981
ALK	0	genome.wustl.edu	37	2	29416141	29416141	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	29416141	29416141	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	silent	c.4812	p.Y1604	0.991	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094				82	0	0	90	13	12.6214
ATP6V1E2	0	genome.wustl.edu	37	2	46739557	46739557	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	46739557	46739557	C	T	SNP	ATP6V1E2	ENST00000306448	human	ensembl	74_37	-1	known	silent	c.294	p.A98	0.008	pfam_ATPase_V1/A1-cplx_esu	pfam_ATPase_V1/A1-cplx_esu	-	no_errors	ATP6V1E2	HGNC	ENSG00000250565				173	0	0	170	15	8.10811
CTNNA2	0	genome.wustl.edu	37	2	80874849	80874849	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	80874849	80874849	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.2672	p.S891F	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032				200	0	0	350	19	5.14905
RETSAT	0	genome.wustl.edu	37	2	85581480	85581480	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	2	85581480	85581480	T	A	SNP	RETSAT	ENST00000295802	human	ensembl	74_37	-1	known	missense	c.151	p.R51W	1.000	NULL	pfam_Amino_oxidase,pfam_FAD_bind_dom,pfam_FAD-dep_OxRdtase,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_mOase_FAD-bd	-	no_errors	RETSAT	HGNC	ENSG00000042445				471	0	0	420	43	9.28726
TMC2	0	genome.wustl.edu	37	20	2591146	2591146	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	20	2591146	2591146	C	T	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.1495	p.R499C	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488				276	1	0.361011	218	17	7.23404
SETD4	0	genome.wustl.edu	37	21	37416162	37416162	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	21	37416162	37416162	G	A	SNP	SETD4	ENST00000332131	human	ensembl	74_37	-1	known	silent	c.819	p.G273	0.655	pfam_SET_dom,pirsf_Lys_MTase_YDR198C_prd	pfam_Rubisco_LSMT_subst-bd,pfam_SET_dom,pirsf_Lys_MTase_YDR198C_prd	-	no_errors	SETD4	HGNC	ENSG00000185917				113	0	0	105	12	10.2564
GAL3ST1	0	genome.wustl.edu	37	22	30951395	30951395	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	22	30951395	30951395	C	T	SNP	GAL3ST1	ENST00000338911	human	ensembl	74_37	-1	known	missense	c.817	p.V273M	1.000	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST1	HGNC	ENSG00000128242				176	0	0	127	17	11.8056
FBXO40	0	genome.wustl.edu	37	3	121341997	121341997	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	3	121341997	121341997	C	A	SNP	FBXO40	ENST00000338040	human	ensembl	74_37	+1	known	missense	c.1721	p.T574N	1.000	superfamily_F-box_dom,pfscan_F-box_dom	superfamily_F-box_dom,superfamily_TRAF-like,pfscan_F-box_dom,pfscan_Znf_TRAF	-	no_errors	FBXO40	HGNC	ENSG00000163833				176	0	0	158	22	12.2222
CAND2	0	genome.wustl.edu	37	3	12858905	12858905	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	3	12858905	12858905	G	A	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	missense	c.2474	p.R825H	0.090	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712				145	0	0	128	18	12.3288
CHL1	0	genome.wustl.edu	37	3	382574	382574	+	Silent	SNP	T	T	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	3	382574	382574	T	G	SNP	CHL1	ENST00000256509	human	ensembl	74_37	+1	known	silent	c.483	p.P161	0.014	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CHL1	HGNC	ENSG00000134121				70	0	0	96	8	7.69231
EXOSC7	0	genome.wustl.edu	37	3	45052854	45052854	+	RNA	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	3	45052854	45052854	G	A	SNP	EXOSC7	ENST00000461361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXOSC7	HGNC	ENSG00000075914				50	0	0	29	4	12.1212
TACR3	0	genome.wustl.edu	37	4	104640440	104640440	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	4	104640440	104640440	G	A	SNP	TACR3	ENST00000304883	human	ensembl	74_37	-1	known	silent	c.393	p.D131	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_NK3_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK1_rcpt	-	no_errors	TACR3	HGNC	ENSG00000169836				104	0	0	101	11	9.82143
PPARGC1A	0	genome.wustl.edu	37	4	23815806	23815806	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	4	23815806	23815806	G	A	SNP	PPARGC1A	ENST00000264867	human	ensembl	74_37	-1	known	silent	c.1300	p.L434	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819				88	0	0	121	10	7.63359
KLB	0	genome.wustl.edu	37	4	39449979	39449979	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	4	39449979	39449979	G	T	SNP	KLB	ENST00000257408	human	ensembl	74_37	+1	known	missense	c.2808	p.E936D	0.999	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	KLB	HGNC	ENSG00000134962				99	0	0	63	11	14.8649
PDS5A	0	genome.wustl.edu	37	4	39915231	39915231	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	4	39915231	39915231	C	T	SNP	PDS5A	ENST00000303538	human	ensembl	74_37	-1	known	missense	c.992	p.R331Q	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5A	HGNC	ENSG00000121892				121	0	0	122	17	12.2302
C1QTNF2	0	genome.wustl.edu	37	5	159776723	159776723	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	5	159776723	159776723	G	A	SNP	C1QTNF2	ENST00000393975	human	ensembl	74_37	-1	known	missense	c.445	p.R149W	1.000	pfam_Collagen	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF2	HGNC	ENSG00000145861				142	0	0	140	10	6.66667
LCP2	0	genome.wustl.edu	37	5	169697919	169697919	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	5	169697919	169697919	T	G	SNP	LCP2	ENST00000046794	human	ensembl	74_37	-1	known	missense	c.327	p.E109D	0.870	NULL	pfam_SH2,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,smart_SH2,pfscan_SH2	-	no_errors	LCP2	HGNC	ENSG00000043462				45	0	0	48	4	7.69231
NIPBL	0	genome.wustl.edu	37	5	37052624	37052624	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	5	37052624	37052624	C	T	SNP	NIPBL	ENST00000282516	human	ensembl	74_37	+1	known	nonsense	c.7219	p.R2407*	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	NIPBL	HGNC	ENSG00000164190				195	0	0	173	20	10.3627
VCAN	0	genome.wustl.edu	37	5	82834437	82834437	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	5	82834437	82834437	C	T	SNP	VCAN	ENST00000265077	human	ensembl	74_37	+1	known	missense	c.5615	p.P1872L	0.326	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	VCAN	HGNC	ENSG00000038427				266	0	0	393	44	10.0686
GPR98	0	genome.wustl.edu	37	5	89948224	89948224	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	5	89948224	89948224	G	T	SNP	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	missense	c.3478	p.D1160Y	1.000	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199				205	0	0	211	23	9.82906
GRIK2	0	genome.wustl.edu	37	6	102247636	102247636	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	102247636	102247636	C	T	SNP	GRIK2	ENST00000421544	human	ensembl	74_37	+1	known	silent	c.1065	p.F355	0.998	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK2	HGNC	ENSG00000164418				92	0	0	157	15	8.72093
SLC2A12	0	genome.wustl.edu	37	6	134350402	134350402	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	134350402	134350402	G	A	SNP	SLC2A12	ENST00000275230	human	ensembl	74_37	-1	known	silent	c.561	p.Y187	0.734	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt	-	no_errors	SLC2A12	HGNC	ENSG00000146411				145	0	0	143	16	10.0629
SYNE1	0	genome.wustl.edu	37	6	152774695	152774695	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	152774695	152774695	G	A	SNP	SYNE1	ENST00000495090	human	ensembl	74_37	-1	putative	missense	c.1754	p.P585L	0.000	NULL	NULL	-	no_errors	SYNE1	HGNC	ENSG00000131018				289	0	0	294	29	8.97833
OR2B2	0	genome.wustl.edu	37	6	27879292	27879292	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	27879292	27879292	T	C	SNP	OR2B2	ENST00000303324	human	ensembl	74_37	-1	known	missense	c.806	p.D269G	0.080	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2B2	HGNC	ENSG00000168131				154	0	0	181	18	9.04523
C6orf15	0	genome.wustl.edu	37	6	31079710	31079710	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	31079710	31079710	C	T	SNP	C6orf15	ENST00000259870	human	ensembl	74_37	-1	known	silent	c.426	p.A142	0.000	NULL	NULL	-	no_errors	C6orf15	HGNC	ENSG00000204542				107	0	0	98	15	13.2743
SENP6	0	genome.wustl.edu	37	6	76412460	76412460	+	Silent	SNP	T	T	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	6	76412460	76412460	T	C	SNP	SENP6	ENST00000370014	human	ensembl	74_37	+1	known	silent	c.2388	p.C796	0.614	pfam_Peptidase_C48,pfscan_Peptidase_C48	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701				87	0	0	80	18	18.3673
LRGUK	0	genome.wustl.edu	37	7	133933822	133933822	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	7	133933822	133933822	A	G	SNP	LRGUK	ENST00000285928	human	ensembl	74_37	+1	known	missense	c.2192	p.E731G	0.114	NULL	pfam_GK/Ca_channel_bsu,pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_GK/Ca_channel_bsu,pfscan_Guanylate_kin-like	-	no_errors	LRGUK	HGNC	ENSG00000155530				205	0	0	224	24	9.67742
NME8	0	genome.wustl.edu	37	7	37889997	37889997	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	7	37889997	37889997	A	C	SNP	NME8	ENST00000199447	human	ensembl	74_37	+1	known	missense	c.51	p.Q17H	0.087	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288				299	1	0.333333	381	36	8.63309
INHBA	0	genome.wustl.edu	37	7	41729393	41729393	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	7	41729393	41729393	C	T	SNP	INHBA	ENST00000242208	human	ensembl	74_37	-1	known	missense	c.1136	p.R379Q	1.000	pfam_TGF-b_C,smart_TGF-b_C	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaA,prints_Inhibin_asu	-	no_errors	INHBA	HGNC	ENSG00000122641				155	0	0	187	23	10.9524
TNRC18	0	genome.wustl.edu	37	7	5410913	5410913	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	7	5410913	5410913	G	A	SNP	TNRC18	ENST00000399537	human	ensembl	74_37	-1	known	silent	c.3312	p.A1104	0.000	NULL	pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom	-	no_errors	TNRC18	HGNC	ENSG00000182095				39	0	0	36	2	5.26316
GAL3ST4	0	genome.wustl.edu	37	7	99757813	99757813	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	7	99757813	99757813	C	T	SNP	GAL3ST4	ENST00000360039	human	ensembl	74_37	-1	known	missense	c.1199	p.R400Q	0.268	pfam_Gal-3-0_sulfotransfrase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST4	HGNC	ENSG00000197093				260	1	0.383142	216	28	11.4754
RIMS2	0	genome.wustl.edu	37	8	104898339	104898339	+	Silent	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	104898339	104898339	C	T	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	silent	c.1512	p.G504	0.919	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406				47	0	0	129	22	14.5695
COL14A1	0	genome.wustl.edu	37	8	121322263	121322263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	121322263	121322263	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	nonsense	c.4417	p.R1473*	1.000	pfam_Collagen	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				125	0	0	143	21	12.8049
OC90	0	genome.wustl.edu	37	8	133036823	133036823	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	133036823	133036823	C	T	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	missense	c.1387	p.E463K	0.003	NULL	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	OC90	Uniprot_gn	ENSG00000258417				35	0	0	30	4	11.7647
SLC45A4	0	genome.wustl.edu	37	8	142227211	142227211	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	142227211	142227211	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	silent	c.1707	p.A569	0.056	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				198	0	0	136	16	10.5263
CSMD1	0	genome.wustl.edu	37	8	2820779	2820779	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	2820779	2820779	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.9422	p.R3141H	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				224	0	0	308	23	6.94864
ORM1	0	genome.wustl.edu	37	9	117087117	117087117	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	9	117087117	117087117	A	G	SNP	ORM1	ENST00000259396	human	ensembl	74_37	+1	known	missense	c.376	p.K126E	0.000	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM1	HGNC	ENSG00000229314				143	0	0	107	21	16.4062
PGM5	0	genome.wustl.edu	37	9	71098810	71098810	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	9	71098810	71098810	C	T	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.1325	p.T442M	0.883	NULL	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330				120	0	0	126	8	5.97015
SPATA31D1	0	genome.wustl.edu	37	9	84608947	84608947	+	Silent	SNP	A	A	C			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	9	84608947	84608947	A	C	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	silent	c.3562	p.R1188	0.002	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929				108	1	0.917431	103	12	10.4348
NOX1	0	genome.wustl.edu	37	X	100125713	100125713	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	100125713	100125713	G	A	SNP	NOX1	ENST00000372966	human	ensembl	74_37	-1	known	missense	c.136	p.L46F	0.994	NULL	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX1	HGNC	ENSG00000007952				214	0	0	227	29	11.3281
SLC25A5	0	genome.wustl.edu	37	X	118604441	118604441	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	118604441	118604441	G	A	SNP	SLC25A5	ENST00000317881	human	ensembl	74_37	+1	known	missense	c.704	p.R235H	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022				113	0	0	87	23	20.9091
SPANXN2	0	genome.wustl.edu	37	X	142795339	142795339	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	142795339	142795339	T	G	SNP	SPANXN2	ENST00000370498	human	ensembl	74_37	-1	known	missense	c.339	p.E113D	0.000	NULL	pfam_SPANX_prot	-	no_errors	SPANXN2	HGNC	ENSG00000203924				718	0	0	793	76	8.74568
MAGEB18	0	genome.wustl.edu	37	X	26157454	26157454	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	26157454	26157454	T	G	SNP	MAGEB18	ENST00000325250	human	ensembl	74_37	+1	known	missense	c.352	p.L118V	0.130	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774				31	0	0	39	3	7.14286
ATP6AP2	0	genome.wustl.edu	37	X	40464996	40464996	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	40464996	40464996	C	T	SNP	ATP6AP2	ENST00000378438	human	ensembl	74_37	+1	known	nonsense	c.1042	p.R348*	1.000	pfam_Renin_rcpt	pfam_Renin_rcpt	-	no_errors	ATP6AP2	HGNC	ENSG00000182220				125	0	0	147	20	11.976
PHKA1	0	genome.wustl.edu	37	X	71895995	71895995	+	Silent	SNP	G	G	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	X	71895995	71895995	G	A	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	silent	c.543	p.F181	0.716	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177				180	1	0.552486	184	17	8.45771
ELF3	0	genome.wustl.edu	37	1	201982390	201982391	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	1	201982390	201982391	-	A	INS	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	frame_shift_ins	c.769_770	p.Y257fs	0.992:0.991	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				161	0	0	143	13	8.33333
PTPRG	0	genome.wustl.edu	37	3	62240857	62240859	+	In_Frame_Del	DEL	TAA	TAA	-			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	TAA	TAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	3	62240857	62240859	TAA	-	DEL	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	in_frame_del	c.2526_2528	p.N844in_frame_del	0.974:1.000:1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724				194	0	0	295	17	5.44872
TEX15	0	genome.wustl.edu	37	8	30702127	30702128	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-4462-01A-01D-1158-08	TCGA-CG-4462-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	77e84522-a623-4c24-b486-1f3aaea36714	fbcc8c24-1ed2-469f-ad78-e1fa8555d067	8	30702127	30702128	-	G	INS	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_ins	c.4407_4406	p.K1469fs	0.001:0.015	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863				119	0	0	139	17	10.8974
