Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KCNA10	0	genome.wustl.edu	37	1	111061291	111061291	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	111061291	111061291	C	T	SNP	KCNA10	ENST00000369771	human	ensembl	74_37	-1	known	missense	c.119	p.R40Q	0.096	NULL	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA10	HGNC	ENSG00000143105				103	0	0	97	20	17.094
SYT6	0	genome.wustl.edu	37	1	114682265	114682265	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	114682265	114682265	G	A	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	nonsense	c.484	p.Q162*	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207				101	0	0	58	22	27.5
MNDA	0	genome.wustl.edu	37	1	158815551	158815551	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	158815551	158815551	G	T	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	missense	c.745	p.V249L	0.887	pfam_HIN200/IF120x,pfscan_HIN200/IF120x	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563				130	0	0	102	13	11.3043
CROCCP2	0	genome.wustl.edu	37	1	16946336	16946336	+	RNA	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	16946336	16946336	G	A	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				25	0	0	28	5	15.1515
COX15	0	genome.wustl.edu	37	10	101483725	101483725	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	101483725	101483725	G	A	SNP	COX15	ENST00000016171	human	ensembl	74_37	-1	known	silent	c.738	p.L246	0.139	pfam_HemeA_syn	pfam_HemeA_syn,superfamily_Trypsin-like_Pept_dom	-	no_errors	COX15	HGNC	ENSG00000014919				217	0	0	159	46	22.439
HSPA12A	0	genome.wustl.edu	37	10	118434813	118434813	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	118434813	118434813	G	A	SNP	HSPA12A	ENST00000369209	human	ensembl	74_37	-1	known	missense	c.1507	p.R503W	1.000	NULL	NULL	-	no_errors	HSPA12A	HGNC	ENSG00000165868				63	0	0	47	18	27.6923
TACC2	0	genome.wustl.edu	37	10	123970399	123970399	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	123970399	123970399	G	A	SNP	TACC2	ENST00000334433	human	ensembl	74_37	+1	known	silent	c.6459	p.T2153	0.002	NULL	pfam_TACC	-	no_errors	TACC2	HGNC	ENSG00000138162				584	0	0	480	93	16.2304
SPAG6	0	genome.wustl.edu	37	10	22657513	22657513	+	Silent	SNP	A	A	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	22657513	22657513	A	C	SNP	SPAG6	ENST00000376603	human	ensembl	74_37	+1	known	silent	c.606	p.A202	0.065	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327				210	0	0	143	39	21.4286
CTNNA3	0	genome.wustl.edu	37	10	67679956	67679956	+	RNA	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	67679956	67679956	G	A	SNP	CTNNA3	ENST00000373735	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTNNA3	HGNC	ENSG00000183230				23	0	0	16	5	23.8095
OR4C16	0	genome.wustl.edu	37	11	55339628	55339628	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	55339628	55339628	G	A	SNP	OR4C16	ENST00000314634	human	ensembl	74_37	+1	known	missense	c.25	p.E9K	0.016	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C16	HGNC	ENSG00000181935				216	0	0	151	46	23.3503
RASGRP2	0	genome.wustl.edu	37	11	64510268	64510268	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	64510268	64510268	A	G	SNP	RASGRP2	ENST00000377494	human	ensembl	74_37	-1	known	missense	c.71	p.F24S	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831				23	0	0	18	6	25
PAK1	0	genome.wustl.edu	37	11	77070042	77070042	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	77070042	77070042	C	G	SNP	PAK1	ENST00000278568	human	ensembl	74_37	-1	known	missense	c.498	p.E166D	1.000	superfamily_WASP_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_CRIB_dom,superfamily_Kinase-like_dom,superfamily_WASP_C,smart_CRIB_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRIB_dom,pfscan_Prot_kinase_dom	-	no_errors	PAK1	HGNC	ENSG00000149269				104	0	0	96	28	22.5806
FOLH1B	0	genome.wustl.edu	37	11	89403629	89403629	+	RNA	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	89403629	89403629	G	A	SNP	FOLH1B	ENST00000525540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FOLH1B	HGNC	ENSG00000134612				207	0	0	177	14	7.32984
GPR133	0	genome.wustl.edu	37	12	131569149	131569149	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	131569149	131569149	G	A	SNP	GPR133	ENST00000261654	human	ensembl	74_37	+1	known	missense	c.1612	p.V538I	0.003	pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom	pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR133	HGNC	ENSG00000111452				62	0	0	53	40	43.0108
TMCC3	0	genome.wustl.edu	37	12	94976263	94976263	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	94976263	94976263	C	T	SNP	TMCC3	ENST00000261226	human	ensembl	74_37	-1	known	missense	c.130	p.G44R	1.000	NULL	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC3	HGNC	ENSG00000057704				261	0	0	200	57	22.179
OR4N4	0	genome.wustl.edu	37	15	22383082	22383082	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	15	22383082	22383082	G	C	SNP	OR4N4	ENST00000328795	human	ensembl	74_37	+1	known	missense	c.610	p.G204R	0.112	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N4	HGNC	ENSG00000183706				493	0	0	492	42	7.86517
AP3B2	0	genome.wustl.edu	37	15	83349607	83349607	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	15	83349607	83349607	G	A	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	silent	c.753	p.F251	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723				50	0	0	42	12	22.2222
AKAP13	0	genome.wustl.edu	37	15	86077059	86077059	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	15	86077059	86077059	C	G	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.426	p.H142Q	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776				153	0	0	117	23	16.4286
SPSB3	0	genome.wustl.edu	37	16	1831391	1831391	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	16	1831391	1831391	A	G	SNP	SPSB3	ENST00000301717	human	ensembl	74_37	-1	known	missense	c.94	p.S32P	0.015	NULL	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_SOCS_C,pfscan_B30.2/SPRY,pfscan_SOCS_C	-	no_errors	SPSB3	HGNC	ENSG00000162032				97	0	0	93	28	23.1405
KIAA0100	0	genome.wustl.edu	37	17	26965392	26965392	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	26965392	26965392	C	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.1390	p.V464I	0.752	pfam_FMP27_N	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202				92	0	0	125	8	6.01504
TOP2A	0	genome.wustl.edu	37	17	38560458	38560458	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	38560458	38560458	C	A	SNP	TOP2A	ENST00000423485	human	ensembl	74_37	-1	known	missense	c.2229	p.K743N	1.000	pfam_Topo_IIA_A/C,superfamily_Topo_IIA_like_dom,smart_Topo_IIA_A/C,prints_TopoII_euk	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2A	HGNC	ENSG00000131747				411	0	0	315	112	26.2295
CDH2	0	genome.wustl.edu	37	18	25585844	25585844	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	18	25585844	25585844	C	A	SNP	CDH2	ENST00000269141	human	ensembl	74_37	-1	known	missense	c.816	p.W272C	1.000	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin	-	no_errors	CDH2	HGNC	ENSG00000170558				351	0	0	202	62	23.4848
ZNF554	0	genome.wustl.edu	37	19	2834817	2834817	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	2834817	2834817	G	A	SNP	ZNF554	ENST00000317243	human	ensembl	74_37	+1	known	silent	c.1584	p.A528	0.799	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF554	HGNC	ENSG00000172006				217	0	0	144	51	26.1538
SLC1A5	0	genome.wustl.edu	37	19	47281994	47281994	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	47281994	47281994	G	T	SNP	SLC1A5	ENST00000542575	human	ensembl	74_37	-1	known	missense	c.996	p.N332K	1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A5	HGNC	ENSG00000105281				105	1	0.943396	72	35	32.7103
IRF3	0	genome.wustl.edu	37	19	50163007	50163007	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	50163007	50163007	G	A	SNP	IRF3	ENST00000601291	human	ensembl	74_37	-1	putative	missense	c.1198	p.H400Y	1.000	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF3	HGNC	ENSG00000126456				179	0	0	104	39	27.2727
PDIA6	0	genome.wustl.edu	37	2	10930895	10930895	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	10930895	10930895	G	C	SNP	PDIA6	ENST00000381611	human	ensembl	74_37	-1	known	missense	c.664	p.L222V	0.991	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,tigrfam_Disulphide_isomerase	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold,prints_Thioredoxin,tigrfam_Disulphide_isomerase	-	no_errors	PDIA6	HGNC	ENSG00000143870				186	0	0	159	39	19.697
DYNC1I2	0	genome.wustl.edu	37	2	172585298	172585298	+	Silent	SNP	T	T	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	172585298	172585298	T	C	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	silent	c.1329	p.D443	0.997	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				45	0	0	37	3	7.5
TTN	0	genome.wustl.edu	37	2	179422480	179422480	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	179422480	179422480	T	G	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.79897	p.K26633Q	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				745	0	0	618	63	9.2511
APOB	0	genome.wustl.edu	37	2	21233527	21233527	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	21233527	21233527	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.6213	p.L2071	0.942	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				213	0	0	145	49	25.2577
APOB	0	genome.wustl.edu	37	2	21241934	21241934	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	21241934	21241934	G	A	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	silent	c.3051	p.S1017	0.211	pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674				246	0	0	193	53	21.5447
SH3BP4	0	genome.wustl.edu	37	2	235951699	235951699	+	Silent	SNP	C	C	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	235951699	235951699	C	A	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	silent	c.2286	p.L762	0.986	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				95	0	0	58	14	19.4444
LRPPRC	0	genome.wustl.edu	37	2	44139618	44139618	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	44139618	44139618	T	G	SNP	LRPPRC	ENST00000260665	human	ensembl	74_37	-1	known	missense	c.3228	p.L1076F	0.864	NULL	pfam_Pentatricopeptide_repeat,tigrfam_Pentatricopeptide_repeat	-	no_errors	LRPPRC	HGNC	ENSG00000138095				108	1	0.917431	93	31	25
NRXN1	0	genome.wustl.edu	37	2	50765393	50765393	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	50765393	50765393	C	G	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.2117	p.R706T	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915				231	1	0.431034	158	45	22.1675
BTBD3	0	genome.wustl.edu	37	20	11899738	11899738	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	11899738	11899738	G	T	SNP	BTBD3	ENST00000378226	human	ensembl	74_37	+1	known	missense	c.331	p.A111S	1.000	superfamily_BTB/POZ_fold	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640				50	0	0	28	11	28.2051
BTBD3	0	genome.wustl.edu	37	20	11900476	11900476	+	Silent	SNP	T	T	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	11900476	11900476	T	A	SNP	BTBD3	ENST00000378226	human	ensembl	74_37	+1	known	silent	c.528	p.A176	0.798	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD3	HGNC	ENSG00000132640				182	0	0	150	38	20.2128
BPIFB2	0	genome.wustl.edu	37	20	31609144	31609144	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	31609144	31609144	C	T	SNP	BPIFB2	ENST00000170150	human	ensembl	74_37	+1	known	missense	c.1252	p.L418F	0.999	pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB2	HGNC	ENSG00000078898				46	0	0	46	7	13.2075
SOGA1	0	genome.wustl.edu	37	20	35422968	35422968	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	35422968	35422968	T	C	SNP	SOGA1	ENST00000237536	human	ensembl	74_37	-1	known	missense	c.3517	p.S1173G	1.000	NULL	pfam_SOGA	-	no_errors	SOGA1	HGNC	ENSG00000149639				245	0	0	188	72	27.6923
SAMHD1	0	genome.wustl.edu	37	20	35555588	35555588	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	35555588	35555588	C	A	SNP	SAMHD1	ENST00000262878	human	ensembl	74_37	-1	known	missense	c.693	p.W231C	1.000	pfam_HD_domain,smart_HD/PDEase_dom	pfam_HD_domain,pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,smart_HD/PDEase_dom,pfscan_SAM	-	no_errors	SAMHD1	HGNC	ENSG00000101347				213	1	0.46729	155	51	24.7573
RAB6B	0	genome.wustl.edu	37	3	133553468	133553468	+	Silent	SNP	C	C	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	133553468	133553468	C	A	SNP	RAB6B	ENST00000285208	human	ensembl	74_37	-1	known	silent	c.513	p.A171	0.004	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6B	HGNC	ENSG00000154917				211	1	0.471698	162	40	19.802
SLC25A20	0	genome.wustl.edu	37	3	48896993	48896993	+	Silent	SNP	T	T	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	48896993	48896993	T	A	SNP	SLC25A20	ENST00000319017	human	ensembl	74_37	-1	known	silent	c.603	p.G201	0.991	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A20	HGNC	ENSG00000178537				272	0	0	190	13	6.40394
PCDHB18	0	genome.wustl.edu	37	5	140615963	140615963	+	RNA	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	140615963	140615963	G	A	SNP	PCDHB18	ENST00000526308	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PCDHB18	HGNC	ENSG00000146001				214	0	0	160	40	20
C5orf42	0	genome.wustl.edu	37	5	37173906	37173906	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	37173906	37173906	G	A	SNP	C5orf42	ENST00000425232	human	ensembl	74_37	-1	known	missense	c.6122	p.S2041L	0.988	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603				239	0	0	220	33	13.0435
SREK1	0	genome.wustl.edu	37	5	65465970	65465970	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	65465970	65465970	C	T	SNP	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	missense	c.1093	p.R365W	0.988	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914				85	0	0	45	16	26.2295
ROS1	0	genome.wustl.edu	37	6	117645542	117645542	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	6	117645542	117645542	G	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.5594	p.T1865N	0.002	superfamily_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936				51	0	0	36	6	14.2857
TEAD3	0	genome.wustl.edu	37	6	35443212	35443212	+	Silent	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	6	35443212	35443212	C	T	SNP	TEAD3	ENST00000402886	human	ensembl	74_37	-1	novel	silent	c.915	p.S305	0.121	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,pirsf_TEF	-	no_errors	TEAD3	HGNC	ENSG00000007866				133	0	0	87	22	20.1835
BMP5	0	genome.wustl.edu	37	6	55638953	55638953	+	Silent	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	6	55638953	55638953	C	T	SNP	BMP5	ENST00000370830	human	ensembl	74_37	-1	known	silent	c.921	p.A307	0.898	NULL	pfam_TGF-b_N,pfam_TGF-b_C,smart_TGF-b_C	-	no_errors	BMP5	HGNC	ENSG00000112175				192	0	0	214	21	8.93617
KMT2C	0	genome.wustl.edu	37	7	151878743	151878743	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	151878743	151878743	A	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	missense	c.6202	p.S2068T	0.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609				130	0	0	89	5	5.31915
ABCA13	0	genome.wustl.edu	37	7	48313582	48313582	+	Nonsense_Mutation	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	48313582	48313582	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	nonsense	c.4319	p.W1440*	0.012	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869				53	0	0	38	6	13.6364
CCT6P3	0	genome.wustl.edu	37	7	64528850	64528850	+	RNA	SNP	T	T	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	64528850	64528850	T	G	SNP	CCT6P3	ENST00000426828	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997	-	-	-	no_errors	CCT6P3	HGNC	ENSG00000234585				26	0	0	37	3	7.5
EFR3A	0	genome.wustl.edu	37	8	132980566	132980566	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	132980566	132980566	C	G	SNP	EFR3A	ENST00000254624	human	ensembl	74_37	+1	known	missense	c.880	p.Q294E	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	EFR3A	HGNC	ENSG00000132294				64	0	0	44	13	22.807
SLC45A4	0	genome.wustl.edu	37	8	142228731	142228731	+	Silent	SNP	G	G	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	142228731	142228731	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	silent	c.1008	p.H336	0.363	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567				151	0	0	107	56	34.3558
CSMD1	0	genome.wustl.edu	37	8	3165968	3165968	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	3165968	3165968	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.3692	p.R1231H	0.960	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				75	0	0	44	19	30.1587
KCNU1	0	genome.wustl.edu	37	8	36768479	36768479	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	36768479	36768479	C	T	SNP	KCNU1	ENST00000399881	human	ensembl	74_37	+1	known	missense	c.2363	p.A788V	0.063	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_Ca-activ_BK_asu	-	no_errors	KCNU1	HGNC	ENSG00000215262				243	0	0	169	60	26.2009
ZNF484	0	genome.wustl.edu	37	9	95608610	95608610	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	95608610	95608610	C	G	SNP	ZNF484	ENST00000395506	human	ensembl	74_37	-1	known	missense	c.2465	p.S822T	0.018	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF484	HGNC	ENSG00000127081				597	0	0	536	39	6.78261
GABRA3	0	genome.wustl.edu	37	X	151424320	151424320	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	151424320	151424320	C	T	SNP	GABRA3	ENST00000370314	human	ensembl	74_37	-1	known	missense	c.481	p.A161T	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa3_rcpt,prints_GABAA_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRA3	HGNC	ENSG00000011677				333	0	0	256	74	22.4242
SH3KBP1	0	genome.wustl.edu	37	X	19560206	19560206	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	19560206	19560206	A	G	SNP	SH3KBP1	ENST00000397821	human	ensembl	74_37	-1	known	missense	c.1729	p.S577P	0.930	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_p67phox,prints_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SH3KBP1	HGNC	ENSG00000147010				200	0	0	190	33	14.7982
KLHL15	0	genome.wustl.edu	37	X	24024572	24024572	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	24024572	24024572	G	C	SNP	KLHL15	ENST00000328046	human	ensembl	74_37	-1	known	missense	c.239	p.T80S	0.992	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010				278	0	0	224	32	12.5
DMD	0	genome.wustl.edu	37	X	31152236	31152236	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	31152236	31152236	G	C	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.10997	p.S3666C	1.000	pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947				76	0	0	59	14	19.1781
CCNB3	0	genome.wustl.edu	37	X	50052274	50052274	+	Missense_Mutation	SNP	T	T	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	50052274	50052274	T	A	SNP	CCNB3	ENST00000276014	human	ensembl	74_37	+1	known	missense	c.1105	p.F369I	0.000	NULL	pfam_Cyclin_N,pfam_Cyclin_C-dom,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC	ENSG00000147082				156	0	0	132	24	15.3846
XIST	0	genome.wustl.edu	37	X	73043833	73043833	+	RNA	SNP	G	G	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	73043833	73043833	G	C	SNP	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807				26	0	0	26	3	10.3448
ATP7A	0	genome.wustl.edu	37	X	77245137	77245137	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	77245137	77245137	C	T	SNP	ATP7A	ENST00000341514	human	ensembl	74_37	+1	known	missense	c.1019	p.P340L	1.000	superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_Cation_transp_P_typ_ATPase,prints_HG_scavenger,tigrfam_Cation_transp_P-typ_ATPase_IB,tigrfam_Cation_transp_P_typ_ATPase,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240				430	0	0	355	27	7.06806
RPS6KA6	0	genome.wustl.edu	37	X	83351320	83351320	+	Splice_Site	SNP	C	C	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	83351320	83351320	C	T	SNP	RPS6KA6	ENST00000262752	human	ensembl	74_37	-1	known	splice_site	c.1854-1	e20-1	1.000	-	-	-	no_errors	RPS6KA6	HGNC	ENSG00000072133				66	0	0	51	15	22.7273
FBXO2	0	genome.wustl.edu	37	1	11710068	11710069	+	In_Frame_Ins	INS	-	-	GCA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	11710068	11710069	-	GCA	INS	FBXO2	ENST00000354287	human	ensembl	74_37	-1	known	in_frame_ins	c.455_454	p.152in_frame_insL	0.998:1.000	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661				501	0	0	546	31	5.37262
APOA1BP	0	genome.wustl.edu	37	1	156561936	156561937	+	In_Frame_Ins	INS	-	-	ACC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	156561936	156561937	-	ACC	INS	APOA1BP	ENST00000368235	human	ensembl	74_37	+1	known	in_frame_ins	c.226_227	p.77in_frame_insH	1.000:1.000	pfam_YjeF_N_dom,superfamily_YjeF_N_dom,tigrfam_YjeF_N_dom	pfam_YjeF_N_dom,superfamily_YjeF_N_dom,tigrfam_YjeF_N_dom	-	no_errors	APOA1BP	HGNC	ENSG00000163382				316	0	0	264	49	15.655
DUSP12	0	genome.wustl.edu	37	1	161722918	161722919	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	161722918	161722919	-	TA	INS	DUSP12	ENST00000367943	human	ensembl	74_37	+1	known	frame_shift_ins	c.728_729	p.A245fs	0.391:0.000	pirsf_DUSP12,pfscan_Znf_C2H2	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pirsf_DUSP12,pfscan_Znf_C2H2,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	-	no_errors	DUSP12	HGNC	ENSG00000081721				331	0	0	291	45	13.3929
ELF3	0	genome.wustl.edu	37	1	201981535	201981536	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	201981535	201981536	-	C	INS	ELF3	ENST00000359651	human	ensembl	74_37	+1	known	frame_shift_ins	c.449_450	p.Q151fs	0.994:0.998	NULL	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ELF3	HGNC	ENSG00000163435				256	0	0	171	37	17.7885
HSPG2	0	genome.wustl.edu	37	1	22222792	22222792	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	22222792	22222792	C	-	DEL	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	frame_shift_del	c.75	p.L26fs	0.997	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798				440	0	0	410	43	9.49227
NCDN	0	genome.wustl.edu	37	1	36026335	36026336	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	36026335	36026336	-	C	INS	NCDN	ENST00000356090	human	ensembl	74_37	+1	known	frame_shift_ins	c.583_584	p.L196fs	1.000:1.000	NULL	NULL	-	no_errors	NCDN	HGNC	ENSG00000020129				135	0	0	111	15	11.9048
ZC3H12A	0	genome.wustl.edu	37	1	37948822	37948824	+	In_Frame_Del	DEL	CTA	CTA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	CTA	CTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	37948822	37948824	CTA	-	DEL	ZC3H12A	ENST00000373087	human	ensembl	74_37	+1	known	in_frame_del	c.1410_1412	p.Y471in_frame_del	0.000:0.002:0.000	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874				303	0	0	227	33	12.6923
PIK3R3	0	genome.wustl.edu	37	1	46531734	46531734	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	46531734	46531734	T	-	DEL	PIK3R3	ENST00000540385	human	ensembl	74_37	-1	known	frame_shift_del	c.751	p.T251fs	1.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R3	HGNC	ENSG00000117461				234	0	0	209	25	10.6838
MSH4	0	genome.wustl.edu	37	1	76342667	76342680	+	Frame_Shift_Del	DEL	GTTCCTTGGAAGAC	GTTCCTTGGAAGAC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GTTCCTTGGAAGAC	GTTCCTTGGAAGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	76342667	76342680	GTTCCTTGGAAGAC	-	DEL	MSH4	ENST00000263187	human	ensembl	74_37	+1	known	frame_shift_del	c.1352_1365	p.G451fs	0.898:0.916:0.997:1.000:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH4	HGNC	ENSG00000057468				121	0	0	77	7	8.33333
LZIC	0	genome.wustl.edu	37	1	9994876	9994876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	1	9994876	9994876	C	-	DEL	LZIC	ENST00000541052	human	ensembl	74_37	-1	known	frame_shift_del	c.343	p.V115fs	1.000	NULL	pfam_ICAT,superfamily_ICAT	-	no_errors	LZIC	HGNC	ENSG00000162441				455	0	0	403	65	13.8889
FGF8	0	genome.wustl.edu	37	10	103534663	103534664	+	Frame_Shift_Ins	INS	-	-	AGTT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	103534663	103534664	-	AGTT	INS	FGF8	ENST00000320185	human	ensembl	74_37	-1	known	frame_shift_ins	c.163_162	p.V54fs	1.000:1.000	superfamily_Cytokine_IL1-like	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	-	no_errors	FGF8	HGNC	ENSG00000107831				96	0	0	72	16	18.1818
HKDC1	0	genome.wustl.edu	37	10	70986987	70986988	+	Frame_Shift_Ins	INS	-	-	GGCT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	10	70986987	70986988	-	GGCT	INS	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	frame_shift_ins	c.88_89	p.S32fs	1.000:1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510				239	1	0.416667	218	32	12.8
PHLDB1	0	genome.wustl.edu	37	11	118520800	118520801	+	Frame_Shift_Ins	INS	-	-	CG			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	118520800	118520801	-	CG	INS	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	frame_shift_ins	c.3673_3674	p.Y1225fs	1.000:1.000	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144				271	0	0	235	18	7.11462
GLYATL1	0	genome.wustl.edu	37	11	58722252	58722255	+	Frame_Shift_Del	DEL	GATG	GATG	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GATG	GATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	58722252	58722255	GATG	-	DEL	GLYATL1	ENST00000300079	human	ensembl	74_37	+1	known	frame_shift_del	c.289_292	p.D97fs	0.096:0.084:0.029:0.024	pfam_Glycine_N-acyltransferase_N,superfamily_Acyl_CoA_acyltransferase	pfam_Glycine_N-acyltransferase_N,pfam_Glycine_N-acyltransferase_C,superfamily_Acyl_CoA_acyltransferase	-	no_errors	GLYATL1	HGNC	ENSG00000166840				195	0	0	162	14	7.95455
SF3B2	0	genome.wustl.edu	37	11	65820188	65820189	+	Frame_Shift_Ins	INS	-	-	AGGT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	65820188	65820189	-	AGGT	INS	SF3B2	ENST00000322535	human	ensembl	74_37	+1	known	frame_shift_ins	c.178_179	p.T61fs	0.992:1.000	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_dom,smart_SAP_dom,smart_PSP,pfscan_SAP_dom	-	no_errors	SF3B2	HGNC	ENSG00000087365				159	0	0	142	11	7.18954
TBX10	0	genome.wustl.edu	37	11	67399787	67399788	+	Splice_Site	DEL	AC	AC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	67399787	67399788	AC	-	DEL	TBX10	ENST00000335385	human	ensembl	74_37	-1	known	splice_site_del	c.868+1_868+1	e7+1	0.723:0.784	-	-	-	no_errors	TBX10	HGNC	ENSG00000167800				275	1	0.362319	250	20	7.40741
C2CD3	0	genome.wustl.edu	37	11	73803565	73803566	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	11	73803565	73803566	-	C	INS	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	frame_shift_ins	c.3413_3412	p.A1138fs	1.000:1.000	smart_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				227	0	0	116	33	22.1477
LRRK2	0	genome.wustl.edu	37	12	40619411	40619412	+	In_Frame_Ins	INS	-	-	CTC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	40619411	40619412	-	CTC	INS	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	in_frame_ins	c.206_207	p.71in_frame_insS	1.000:0.997	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906				105	0	0	77	13	14.4444
ACVR1B	0	genome.wustl.edu	37	12	52377884	52377884	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	52377884	52377884	A	-	DEL	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	frame_shift_del	c.913	p.I305fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503				103	0	0	50	19	27.5362
BAZ2A	0	genome.wustl.edu	37	12	57000427	57000428	+	In_Frame_Ins	INS	-	-	TAG			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	57000427	57000428	-	TAG	INS	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	in_frame_ins	c.2189_2188	p.730in_frame_insT	0.000:0.023	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108				850	0	0	777	149	16.0907
METTL21B	0	genome.wustl.edu	37	12	58166512	58166513	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	58166512	58166513	-	G	INS	METTL21B	ENST00000300209	human	ensembl	74_37	+1	known	frame_shift_ins	c.5_6	p.D3fs	0.933:0.002	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427				43	0	0	69	9	11.5385
LEMD3	0	genome.wustl.edu	37	12	65564812	65564812	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	65564812	65564812	C	-	DEL	LEMD3	ENST00000308330	human	ensembl	74_37	+1	known	frame_shift_del	c.1436	p.T479fs	1.000	NULL	pfam_Inner-Nucl-membr_MAN1,pfam_LEM_dom,superfamily_LEM/LEM-like_dom,smart_LEM_dom,pfscan_LEM_dom	-	no_errors	LEMD3	HGNC	ENSG00000174106				199	0	0	142	37	20.6704
MIR1251	0	genome.wustl.edu	37	12	97885724	97885728	+	RNA	DEL	CAGAG	CAGAG	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	CAGAG	CAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	12	97885724	97885728	CAGAG	-	DEL	MIR1251	ENST00000408552	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	MIR1251	HGNC	ENSG00000221479				121	0	0	95	11	10.3774
F10	0	genome.wustl.edu	37	13	113795276	113795277	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	13	113795276	113795277	GT	-	DEL	F10	ENST00000375559	human	ensembl	74_37	+1	known	frame_shift_del	c.414_415	p.Q138fs	1.000:1.000	pirsf_Pept_S1A_FX,smart_EG-like_dom	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218				222	0	0	193	20	9.38967
EVL	0	genome.wustl.edu	37	14	100608121	100608121	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	14	100608121	100608121	A	-	DEL	EVL	ENST00000392920	human	ensembl	74_37	+1	known	frame_shift_del	c.1210	p.I404fs	1.000	pfam_VASP_tetra,pirsf_Vasodilator_phosphoprotein	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pirsf_Vasodilator_phosphoprotein,pfscan_WH1/EVH1	-	no_errors	EVL	HGNC	ENSG00000196405				82	0	0	55	7	11.2903
NIN	0	genome.wustl.edu	37	14	51202240	51202241	+	Frame_Shift_Ins	INS	-	-	AGCT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	14	51202240	51202241	-	AGCT	INS	NIN	ENST00000245441	human	ensembl	74_37	-1	known	frame_shift_ins	c.5871_5870	p.M1958fs	0.911:0.999	NULL	superfamily_tRNA-bd_arm,pfscan_EF_hand_dom	-	no_errors	NIN	HGNC	ENSG00000100503				110	0	0	70	11	13.5802
DUOXA1	0	genome.wustl.edu	37	15	45409999	45409999	+	Frame_Shift_Del	DEL	C	C	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	15	45409999	45409999	C	-	DEL	DUOXA1	ENST00000267803	human	ensembl	74_37	-1	known	frame_shift_del	c.1166	p.R389fs	0.001	NULL	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA1	HGNC	ENSG00000140254				250	0	0	141	53	27.3196
HERC1	0	genome.wustl.edu	37	15	63966586	63966587	+	Frame_Shift_Ins	INS	-	-	CACT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	15	63966586	63966587	-	CACT	INS	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	frame_shift_ins	c.7801_7800	p.V2600fs	1.000:0.991	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657				128	0	0	67	7	9.45946
PRSS8	0	genome.wustl.edu	37	16	31143847	31143852	+	In_Frame_Del	DEL	CAGTTA	CAGTTA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	CAGTTA	CAGTTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	16	31143847	31143852	CAGTTA	-	DEL	PRSS8	ENST00000317508	human	ensembl	74_37	-1	known	in_frame_del	c.608_603	p.NC202in_frame_del	1.000:1.000:0.997:0.997:1.000:0.992	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS8	HGNC	ENSG00000052344				146	0	0	104	26	20
SPECC1	0	genome.wustl.edu	37	17	20000065	20000066	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	20000065	20000066	-	T	INS	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	frame_shift_ins	c.101_102	p.S35fs	0.956:0.930	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487				355	0	0	310	31	9.09091
NEUROD2	0	genome.wustl.edu	37	17	37761740	37761741	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	37761740	37761741	GG	-	DEL	NEUROD2	ENST00000302584	human	ensembl	74_37	-1	known	frame_shift_del	c.1113_1112	p.P371fs	0.981:1.000	pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pirsf_TF_bHLH_NeuroD,pfscan_bHLH_dom	-	no_errors	NEUROD2	HGNC	ENSG00000171532				48	0	0	60	16	21.0526
KRT33A	0	genome.wustl.edu	37	17	39503140	39503141	+	Frame_Shift_Ins	INS	-	-	GC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	39503140	39503141	-	GC	INS	KRT33A	ENST00000007735	human	ensembl	74_37	-1	known	frame_shift_ins	c.832_831	p.T277fs	1.000:1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT33A	HGNC	ENSG00000006059				308	1	0.323625	281	54	16.1194
GRN	0	genome.wustl.edu	37	17	42427601	42427601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	42427601	42427601	A	-	DEL	GRN	ENST00000053867	human	ensembl	74_37	+1	known	frame_shift_del	c.355	p.N119fs	0.019	NULL	pfam_Granulin,smart_Granulin	-	no_errors	GRN	HGNC	ENSG00000030582				288	0	0	229	57	19.9301
ANKRD40	0	genome.wustl.edu	37	17	48776902	48776902	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	48776902	48776902	T	-	DEL	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	frame_shift_del	c.636	p.V213fs	0.007	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945				356	0	0	282	58	17.0588
CLTC	0	genome.wustl.edu	37	17	57743978	57743978	+	Frame_Shift_Del	DEL	G	G	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	57743978	57743978	G	-	DEL	CLTC	ENST00000269122	human	ensembl	74_37	+1	known	frame_shift_del	c.1920	p.V641fs	0.934	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367				137	0	0	104	14	11.8644
DLG4	0	genome.wustl.edu	37	17	7106118	7106119	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	7106118	7106119	-	G	INS	DLG4	ENST00000485100	human	ensembl	74_37	-1	putative	frame_shift_ins	c.882_881	p.M295fs	0.000:0.000	NULL	pfam_PDZ,pfam_MAGUK_PEST_N,pfam_PDZ_assoc,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DLG4	HGNC	ENSG00000132535				38	0	0	15	12	44.4444
TP53	0	genome.wustl.edu	37	17	7578183	7578187	+	Frame_Shift_Del	DEL	CGGCT	CGGCT	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	CGGCT	CGGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	7578183	7578187	CGGCT	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.666_662	p.E221fs	0.063:0.932:0.973:0.997:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				59	0	0	54	14	20.5882
TBCD	0	genome.wustl.edu	37	17	80888410	80888411	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	17	80888410	80888411	-	C	INS	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	frame_shift_ins	c.3004_3005	p.Q1003fs	0.015:0.060	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556				57	0	0	39	10	20.4082
PHLPP1	0	genome.wustl.edu	37	18	60563239	60563240	+	Frame_Shift_Ins	INS	-	-	CTAA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	18	60563239	60563240	-	CTAA	INS	PHLPP1	ENST00000262719	human	ensembl	74_37	+1	known	frame_shift_ins	c.2439_2440	p.R814fs	0.990:0.997	NULL	pfam_PP2C-like_dom,pfam_Leu-rich_rpt,superfamily_PP2C-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_PP2C-like_dom,pfscan_Pleckstrin_homology	-	no_errors	PHLPP1	HGNC	ENSG00000081913				67	0	0	47	9	16.0714
STX10	0	genome.wustl.edu	37	19	13259888	13259889	+	Frame_Shift_Ins	INS	-	-	ATAT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	13259888	13259889	-	ATAT	INS	STX10	ENST00000587230	human	ensembl	74_37	-1	known	frame_shift_ins	c.318_317	p.M106fs	0.996:0.996	superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX10	HGNC	ENSG00000104915				20	0	0	20	11	35.4839
WDR88	0	genome.wustl.edu	37	19	33647447	33647448	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	33647447	33647448	-	CA	INS	WDR88	ENST00000355868	human	ensembl	74_37	+1	known	frame_shift_ins	c.996_997	p.S332fs	1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_PQQ_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,smart_PQQ_beta_propeller_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR88	HGNC	ENSG00000166359				126	0	0	132	13	8.96552
CEBPG	0	genome.wustl.edu	37	19	33870509	33870509	+	Frame_Shift_Del	DEL	T	T	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	33870509	33870509	T	-	DEL	CEBPG	ENST00000284000	human	ensembl	74_37	+1	known	frame_shift_del	c.364	p.E124fs	1.000	smart_bZIP,pfscan_bZIP	pfam_bZIP,smart_bZIP,pfscan_bZIP	-	no_errors	CEBPG	HGNC	ENSG00000153879				77	0	0	49	14	22.2222
ZNF805	0	genome.wustl.edu	37	19	57755419	57755420	+	Splice_Site	INS	-	-	AAG			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	19	57755419	57755420	-	AAG	INS	ZNF805	ENST00000414468	human	ensembl	74_37	+1	known	splice_site_ins	c.157+2_157+1	e2+2	1.000:0.997	-	-	-	no_errors	ZNF805	HGNC	ENSG00000204524				137	0	0	81	18	18.1818
POLR1B	0	genome.wustl.edu	37	2	113331234	113331235	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	113331234	113331235	-	A	INS	POLR1B	ENST00000541869	human	ensembl	74_37	+1	known	frame_shift_ins	c.2481_2482	p.S827fs	1.000:1.000	pfam_DNA-dir_RNA_pol_su2_6	pfam_DNA-dir_RNA_pol_su2_6,pfam_RNA_pol_bsu_protrusion,pfam_RNA_pol_Rpb2_3,pfam_RNA_pol_Rpb2_7,pfam_RNA_pol_Rpa2-specific,pfam_RNA_pol_Rpb2_2,pfam_RNA_pol_Rpb2_5	-	no_errors	POLR1B	HGNC	ENSG00000125630				243	0	0	183	51	21.7949
ALS2	0	genome.wustl.edu	37	2	202626188	202626189	+	Frame_Shift_Ins	INS	-	-	GGTA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	202626188	202626189	-	GGTA	INS	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	frame_shift_ins	c.529_528	p.G176fs	1.000:0.003	pfam_Reg_chr_condens,superfamily_RCC1/BLIP-II,pfscan_Reg_chr_condens	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393				164	0	0	118	24	16.9014
C2orf42	0	genome.wustl.edu	37	2	70377542	70377543	+	Frame_Shift_Ins	INS	-	-	GGCC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	70377542	70377543	-	GGCC	INS	C2orf42	ENST00000264434	human	ensembl	74_37	-1	known	frame_shift_ins	c.1671_1670	p.P558fs	0.001:0.924	NULL	NULL	-	no_errors	C2orf42	HGNC	ENSG00000115998				332	0	0	257	32	11.0727
ALMS1	0	genome.wustl.edu	37	2	73678808	73678809	+	In_Frame_Ins	INS	-	-	ATT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	73678808	73678809	-	ATT	INS	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	in_frame_ins	c.5151_5152	p.1718in_frame_insI	0.000:0.000	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127				306	0	0	279	53	15.9639
REEP1	0	genome.wustl.edu	37	2	86481815	86481816	+	Splice_Site	DEL	AC	AC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	2	86481815	86481816	AC	-	DEL	REEP1	ENST00000538924	human	ensembl	74_37	-1	known	splice_site_del	c.324+1_324+1	e4+1	1.000:1.000	-	-	-	no_errors	REEP1	HGNC	ENSG00000068615				205	0	0	172	29	14.4279
THBD	0	genome.wustl.edu	37	20	23029226	23029229	+	Frame_Shift_Del	DEL	AGGA	AGGA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	AGGA	AGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	23029226	23029229	AGGA	-	DEL	THBD	ENST00000377103	human	ensembl	74_37	-1	known	frame_shift_del	c.916_913	p.S305fs	0.745:0.745:0.013:0.000	pirsf_CD93/CD141,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom	pirsf_CD93/CD141,pfam_Tme5_EGF-like,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,prints_Thrombomodulin,pfscan_C-type_lectin	-	no_errors	THBD	HGNC	ENSG00000178726				41	0	0	44	8	15.3846
NDRG3	0	genome.wustl.edu	37	20	35317145	35317146	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	35317145	35317146	-	CA	INS	NDRG3	ENST00000349004	human	ensembl	74_37	-1	known	frame_shift_ins	c.136_135	p.I45fs	0.985:0.930	pfam_Ndr	pfam_Ndr,pfam_AB_hydrolase_1	-	no_errors	NDRG3	HGNC	ENSG00000101079				334	0	0	315	67	17.5393
SPATA2	0	genome.wustl.edu	37	20	48522189	48522190	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	20	48522189	48522190	-	T	INS	SPATA2	ENST00000289431	human	ensembl	74_37	-1	known	frame_shift_ins	c.1530_1529	p.S511fs	1.000:1.000	NULL	NULL	-	no_errors	SPATA2	HGNC	ENSG00000158480				239	0	0	171	52	23.3184
IL17REL	0	genome.wustl.edu	37	22	50436169	50436170	+	Frame_Shift_Ins	INS	-	-	AACC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	22	50436169	50436170	-	AACC	INS	IL17REL	ENST00000341280	human	ensembl	74_37	-1	known	frame_shift_ins	c.822_821	p.F274fs	1.000:1.000	NULL	NULL	-	no_errors	IL17REL	HGNC	ENSG00000188263				120	0	0	116	18	13.4328
POLQ	0	genome.wustl.edu	37	3	121207265	121207266	+	Frame_Shift_Ins	INS	-	-	TAAT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	121207265	121207266	-	TAAT	INS	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	frame_shift_ins	c.4513_4512	p.P1504fs	0.000:0.000	NULL	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341				169	0	0	175	16	8.37696
TM4SF1	0	genome.wustl.edu	37	3	149093465	149093466	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	149093465	149093466	-	C	INS	TM4SF1	ENST00000493298	human	ensembl	74_37	-1	known	frame_shift_ins	c.269_268	p.V90fs	1.000:1.000	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908				387	0	0	309	79	20.3608
GFM1	0	genome.wustl.edu	37	3	158364022	158364023	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	158364022	158364023	TA	-	DEL	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	frame_shift_del	c.303_304	p.I102fs	0.937:1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827				247	0	0	200	55	21.5686
PRKCI	0	genome.wustl.edu	37	3	169991093	169991099	+	Frame_Shift_Del	DEL	ATCAGTC	ATCAGTC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	ATCAGTC	ATCAGTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	169991093	169991099	ATCAGTC	-	DEL	PRKCI	ENST00000295797	human	ensembl	74_37	+1	known	frame_shift_del	c.611_617	p.Q205fs	0.992:0.423:0.811:0.580:0.585:0.625:0.967	pirsf_PKC_zeta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558				180	0	0	158	31	16.4021
ITGA9	0	genome.wustl.edu	37	3	37821476	37821477	+	Frame_Shift_Ins	INS	-	-	ATTT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	37821476	37821477	-	ATTT	INS	ITGA9	ENST00000264741	human	ensembl	74_37	+1	known	frame_shift_ins	c.2751_2752	p.M919fs	0.463:0.314	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA9	HGNC	ENSG00000144668				246	0	0	161	38	19.0955
SMARCC1	0	genome.wustl.edu	37	3	47730865	47730876	+	Splice_Site	DEL	CTGAATTGTTAC	CTGAATTGTTAC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	CTGAATTGTTAC	CTGAATTGTTAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	47730865	47730876	CTGAATTGTTAC	-	DEL	SMARCC1	ENST00000254480	human	ensembl	74_37	-1	known	splice_site_del	c.1263+1_1263+1	e13+1	0.000:0.000:0.001:0.004:0.001:0.000:0.000:0.000:0.946:0.999:1.000:1.000	-	-	-	no_errors	SMARCC1	HGNC	ENSG00000173473				114	0	0	59	14	19.1781
OGG1	0	genome.wustl.edu	37	3	9792012	9792016	+	Frame_Shift_Del	DEL	TACTC	TACTC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	TACTC	TACTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	3	9792012	9792016	TACTC	-	DEL	OGG1	ENST00000302036	human	ensembl	74_37	+1	known	frame_shift_del	c.42_46	p.T15fs	0.010:0.097:0.114:0.013:0.011	tigrfam_Ogg	pfam_OGG_N,pfam_HhH-GPD_domain,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,tigrfam_Ogg	-	no_errors	OGG1	HGNC	ENSG00000114026				73	0	0	54	9	14.2857
TMCO6	0	genome.wustl.edu	37	5	140021540	140021541	+	Frame_Shift_Ins	INS	-	-	AGCT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	140021540	140021541	-	AGCT	INS	TMCO6	ENST00000252100	human	ensembl	74_37	+1	known	frame_shift_ins	c.400_401	p.S136fs	1.000:1.000	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119				152	0	0	124	21	14.4828
KIAA0141	0	genome.wustl.edu	37	5	141305001	141305006	+	In_Frame_Del	DEL	GCGGGG	GCGGGG	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GCGGGG	GCGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	141305001	141305006	GCGGGG	-	DEL	KIAA0141	ENST00000194118	human	ensembl	74_37	+1	known	in_frame_del	c.173_178	p.GG59in_frame_del	0.002:0.001:0.000:0.003:0.040:0.233	NULL	pfam_Sel1-like,smart_Sel1-like	-	no_errors	KIAA0141	HGNC	ENSG00000081791				236	0	0	126	46	26.7442
RBM27	0	genome.wustl.edu	37	5	145651186	145651187	+	Frame_Shift_Ins	INS	-	-	GTTGGAG			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	145651186	145651187	-	GTTGGAG	INS	RBM27	ENST00000265271	human	ensembl	74_37	+1	known	frame_shift_ins	c.2937_2938	p.F982fs	0.992:0.997	NULL	pfam_PWI_dom,pfam_Znf_CCCH,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM27	HGNC	ENSG00000091009				171	0	0	138	19	12.1019
CPEB4	0	genome.wustl.edu	37	5	173317464	173317465	+	Frame_Shift_Ins	INS	-	-	CAGC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	173317464	173317465	-	CAGC	INS	CPEB4	ENST00000265085	human	ensembl	74_37	+1	known	frame_shift_ins	c.728_729	p.H246fs	1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPEB4	HGNC	ENSG00000113742				275	1	0.362319	228	23	9.16335
PPAP2A	0	genome.wustl.edu	37	5	54763747	54763748	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	5	54763747	54763748	-	TA	INS	PPAP2A	ENST00000264775	human	ensembl	74_37	-1	known	frame_shift_ins	c.444_443	p.I149fs	1.000:1.000	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase	-	no_errors	PPAP2A	HGNC	ENSG00000067113				468	0	0	348	69	16.5468
AGER	0	genome.wustl.edu	37	6	32150159	32150160	+	Frame_Shift_Ins	INS	-	-	CA			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	6	32150159	32150160	-	CA	INS	AGER	ENST00000375070	human	ensembl	74_37	-1	known	frame_shift_ins	c.922_921	p.P307fs	0.002:0.001	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	AGER	HGNC	ENSG00000204305				194	0	0	155	42	21.3198
RELN	0	genome.wustl.edu	37	7	103123344	103123345	+	Frame_Shift_Ins	INS	-	-	C			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	103123344	103123345	-	C	INS	RELN	ENST00000424685	human	ensembl	74_37	-1	known	frame_shift_ins	c.10256_10255	p.A3419fs	1.000:1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056				233	0	0	184	36	16.3636
TES	0	genome.wustl.edu	37	7	115890233	115890237	+	Frame_Shift_Del	DEL	ATGCT	ATGCT	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	ATGCT	ATGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	115890233	115890237	ATGCT	-	DEL	TES	ENST00000358204	human	ensembl	74_37	+1	known	frame_shift_del	c.385_389	p.M129fs	1.000:1.000:1.000:1.000:1.000	pfam_PET_domain	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TES	HGNC	ENSG00000135269				159	0	0	109	31	22.1429
UPK3B	0	genome.wustl.edu	37	7	76140366	76140366	+	Frame_Shift_Del	DEL	A	A	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	7	76140366	76140366	A	-	DEL	UPK3B	ENST00000257632	human	ensembl	74_37	+1	known	frame_shift_del	c.397	p.N133fs	1.000	NULL	NULL	-	no_errors	UPK3B	HGNC	ENSG00000243566				38	0	0	38	5	11.6279
ERI1	0	genome.wustl.edu	37	8	8887408	8887409	+	In_Frame_Ins	INS	-	-	AGC			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	8887408	8887409	-	AGC	INS	ERI1	ENST00000250263	human	ensembl	74_37	+1	known	in_frame_ins	c.914_915	p.307in_frame_insA	1.000:0.982	superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_SAP_dom,superfamily_RNaseH-like_dom,smart_SAP_dom,smart_Exonuclease,pfscan_SAP_dom	-	no_errors	ERI1	HGNC	ENSG00000104626				206	0	0	223	31	12.2047
ESRP1	0	genome.wustl.edu	37	8	95705056	95705059	+	Splice_Site	DEL	GTCA	GTCA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GTCA	GTCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	8	95705056	95705059	GTCA	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	splice_site_del	c.1971+1_1971+1	e14+1	1.000:1.000:1.000:1.000	-	-	-	no_errors	ESRP1	HGNC	ENSG00000104413				46	0	0	24	5	17.2414
C9orf50	0	genome.wustl.edu	37	9	132375475	132375476	+	In_Frame_Ins	INS	-	-	GCT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	132375475	132375476	-	GCT	INS	C9orf50	ENST00000372478	human	ensembl	74_37	-1	known	in_frame_ins	c.1099_1098	p.366in_frame_insS	0.104:0.005	NULL	NULL	-	no_errors	C9orf50	HGNC	ENSG00000179058				116	0	0	140	18	11.3924
KIAA1984	0	genome.wustl.edu	37	9	139694875	139694876	+	Frame_Shift_Ins	INS	-	-	AATG			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	139694875	139694876	-	AATG	INS	KIAA1984	ENST00000338005	human	ensembl	74_37	+1	known	frame_shift_ins	c.473_474	p.I160fs	0.907:0.001	NULL	NULL	-	no_errors	KIAA1984	HGNC	ENSG00000213213				32	0	0	24	6	20
TAF1L	0	genome.wustl.edu	37	9	32633408	32633412	+	Frame_Shift_Del	DEL	TATAA	TATAA	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	TATAA	TATAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	32633408	32633412	TATAA	-	DEL	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	frame_shift_del	c.2170_2166	p.Y722fs	1.000:1.000:1.000:1.000:1.000	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728				384	0	0	221	54	19.6364
STOML2	0	genome.wustl.edu	37	9	35102749	35102750	+	In_Frame_Ins	INS	-	-	AGT			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	35102749	35102750	-	AGT	INS	STOML2	ENST00000356493	human	ensembl	74_37	-1	known	in_frame_ins	c.117_116	p.40in_frame_insL	1.000:1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7,prints_Stomatin	-	no_errors	STOML2	HGNC	ENSG00000165283				251	0	0	231	38	14.1264
OR2S2	0	genome.wustl.edu	37	9	35957640	35957642	+	In_Frame_Del	DEL	AAT	AAT	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	35957640	35957642	AAT	-	DEL	OR2S2	ENST00000341959	human	ensembl	74_37	-1	known	in_frame_del	c.456_454	p.I152in_frame_del	0.001:0.000:0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2S2	HGNC	ENSG00000122718				191	0	0	144	21	12.7273
WNK2	0	genome.wustl.edu	37	9	96030931	96030932	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	9	96030931	96030932	-	T	INS	WNK2	ENST00000297954	human	ensembl	74_37	+1	known	frame_shift_ins	c.3936_3937	p.I1313fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK2	HGNC	ENSG00000165238				49	0	0	49	11	18.3333
G6PD	0	genome.wustl.edu	37	X	153762645	153762652	+	Frame_Shift_Del	DEL	GGACAGCC	GGACAGCC	-			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	GGACAGCC	GGACAGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	153762645	153762652	GGACAGCC	-	DEL	G6PD	ENST00000369620	human	ensembl	74_37	-1	known	frame_shift_del	c.552_545	p.R182fs	0.971:1.000:1.000:1.000:1.000:0.946:0.189:0.003	pfam_G6P_DH_NAD-bd,pirsf_G6P_DH	pfam_G6P_DH_C,pfam_G6P_DH_NAD-bd,pirsf_G6P_DH,prints_G6P_DH	-	no_errors	G6PD	HGNC	ENSG00000160211				187	0	0	110	24	17.9104
AR	0	genome.wustl.edu	37	X	66766578	66766579	+	Frame_Shift_Ins	INS	-	-	T			TCGA-CG-4477-01A-01D-1158-08	TCGA-CG-4477-10A-01D-1158-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b90e44b2-1ae5-47dd-b979-81612daaf3db	02d6b265-8620-4a55-b3c5-84d930b65532	X	66766578	66766579	-	T	INS	AR	ENST00000374690	human	ensembl	74_37	+1	known	frame_shift_ins	c.1590_1591	p.Y530fs	1.000:1.000	NULL	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				48	0	0	38	12	24
