Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRAMEF10	0	genome.wustl.edu	37	1	12954419	12954419	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	12954419	12954419	G	A	SNP	PRAMEF10	ENST00000235347	human	ensembl	74_37	-1	known	silent	c.864	p.L288	0.620	NULL	NULL	-	no_errors	PRAMEF10	HGNC	ENSG00000187545				114	0	0	71	32	31.068
FLG	0	genome.wustl.edu	37	1	152280076	152280076	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	152280076	152280076	C	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.7286	p.G2429E	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				540	0	0	421	153	26.6551
FLG	0	genome.wustl.edu	37	1	152281163	152281163	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	152281163	152281163	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.6199	p.P2067T	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				513	1	0.194553	583	60	9.33126
DARC	0	genome.wustl.edu	37	1	159175316	159175316	+	Silent	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	159175316	159175316	C	A	SNP	DARC	ENST00000368121	human	ensembl	74_37	+1	known	silent	c.93	p.S31	0.000	NULL	prints_Duffy_chemokine_rcpt	-	no_errors	DARC	HGNC	ENSG00000213088				119	0	0	74	34	31.4815
KIAA1614	0	genome.wustl.edu	37	1	180885845	180885845	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	180885845	180885845	G	A	SNP	KIAA1614	ENST00000367588	human	ensembl	74_37	+1	known	silent	c.606	p.L202	0.000	NULL	NULL	-	no_errors	KIAA1614	HGNC	ENSG00000135835				196	1	0.507614	139	53	27.6042
NT5C2	0	genome.wustl.edu	37	10	104859733	104859733	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	10	104859733	104859733	G	A	SNP	NT5C2	ENST00000343289	human	ensembl	74_37	-1	known	missense	c.583	p.R195W	1.000	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	pfam_HAD-SF_hydro_IG_5-nucl,superfamily_HAD-like_dom,pirsf_Pur_nucleotidase,tigrfam_HAD-SF_hydro_IG_5-nucl	-	no_errors	NT5C2	HGNC	ENSG00000076685				210	0	0	212	56	20.8955
TCERG1L	0	genome.wustl.edu	37	10	132944909	132944909	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	10	132944909	132944909	G	A	SNP	TCERG1L	ENST00000368642	human	ensembl	74_37	-1	known	missense	c.1049	p.T350M	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1L	HGNC	ENSG00000176769				75	0	0	73	15	17.0455
YME1L1	0	genome.wustl.edu	37	10	27400956	27400956	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	10	27400956	27400956	C	G	SNP	YME1L1	ENST00000326799	human	ensembl	74_37	-1	known	missense	c.2272	p.A758P	1.000	pfam_Peptidase_M41,tigrfam_FtsH	pfam_Peptidase_M41,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_FtsH	-	no_errors	YME1L1	HGNC	ENSG00000136758				217	0	0	131	33	20.122
CWF19L2	0	genome.wustl.edu	37	11	107299860	107299860	+	Silent	SNP	A	A	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	11	107299860	107299860	A	G	SNP	CWF19L2	ENST00000282251	human	ensembl	74_37	-1	known	silent	c.1098	p.A366	0.146	NULL	pfam_Cwf19-like_C_dom-1,pfam_Cwf19-like_C_dom-2,superfamily_HIT-like	-	no_errors	CWF19L2	HGNC	ENSG00000152404				190	0	0	136	34	20
SIDT2	0	genome.wustl.edu	37	11	117059426	117059426	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	11	117059426	117059426	C	T	SNP	SIDT2	ENST00000278951	human	ensembl	74_37	+1	known	missense	c.1225	p.R409C	1.000	NULL	NULL	-	no_errors	SIDT2	HGNC	ENSG00000149577				83	0	0	75	5	6.25
OR4S1	0	genome.wustl.edu	37	11	48328184	48328184	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	11	48328184	48328184	G	A	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.410	p.R137Q	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555				163	0	0	124	28	18.4211
KDM4D	0	genome.wustl.edu	37	11	94731792	94731792	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	11	94731792	94731792	G	A	SNP	KDM4D	ENST00000335080	human	ensembl	74_37	+1	known	missense	c.1256	p.R419Q	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,smart_TF_JmjN,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4D	HGNC	ENSG00000186280				119	1	0.833333	129	7	5.14706
TDG	0	genome.wustl.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	12	104378526	104378526	G	T	SNP	TDG	ENST00000392872	human	ensembl	74_37	+1	known	splice_site	c.793-1	e8-1	1.000	-	-	-	no_errors	TDG	HGNC	ENSG00000139372				93	0	0	82	5	5.74713
CUX2	0	genome.wustl.edu	37	12	111785892	111785892	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	12	111785892	111785892	G	T	SNP	CUX2	ENST00000261726	human	ensembl	74_37	+1	known	missense	c.4224	p.M1408I	1.000	NULL	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,superfamily_Prefoldin,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	CUX2	HGNC	ENSG00000111249				84	0	0	77	5	6.09756
PDZRN4	0	genome.wustl.edu	37	12	41967067	41967067	+	Missense_Mutation	SNP	A	A	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	12	41967067	41967067	A	T	SNP	PDZRN4	ENST00000402685	human	ensembl	74_37	+1	known	missense	c.2486	p.Y829F	1.000	NULL	pfam_PDZ,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	PDZRN4	HGNC	ENSG00000165966				274	0	0	278	27	8.85246
TESPA1	0	genome.wustl.edu	37	12	55356738	55356738	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	12	55356738	55356738	A	C	SNP	TESPA1	ENST00000316577	human	ensembl	74_37	-1	known	missense	c.944	p.V315G	1.000	NULL	NULL	-	no_errors	TESPA1	HGNC	ENSG00000135426				87	0	0	60	25	29.4118
TBC1D4	0	genome.wustl.edu	37	13	75923398	75923398	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	13	75923398	75923398	G	A	SNP	TBC1D4	ENST00000377636	human	ensembl	74_37	-1	known	missense	c.1316	p.T439M	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D4	HGNC	ENSG00000136111				95	0	0	88	8	8.33333
DLK1	0	genome.wustl.edu	37	14	101193435	101193435	+	Silent	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	14	101193435	101193435	C	T	SNP	DLK1	ENST00000341267	human	ensembl	74_37	+1	known	silent	c.30	p.V10	1.000	NULL	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559				9	0	0	11	6	35.2941
TTLL5	0	genome.wustl.edu	37	14	76245989	76245989	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	14	76245989	76245989	C	A	SNP	TTLL5	ENST00000298832	human	ensembl	74_37	+1	known	missense	c.2459	p.T820N	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL5	HGNC	ENSG00000119685				157	0	0	105	23	17.9688
OTUD7A	0	genome.wustl.edu	37	15	31776401	31776401	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	15	31776401	31776401	C	A	SNP	OTUD7A	ENST00000382902	human	ensembl	74_37	-1	known	missense	c.1898	p.R633L	1.000	NULL	pfam_OTU,superfamily_UBA-like,smart_Znf_A20,pfscan_OTU,pfscan_Znf_A20	-	no_errors	OTUD7A	HGNC	ENSG00000169918				21	0	0	17	3	15
TTBK2	0	genome.wustl.edu	37	15	43067923	43067923	+	Splice_Site	SNP	T	T	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	15	43067923	43067923	T	C	SNP	TTBK2	ENST00000267890	human	ensembl	74_37	-1	known	splice_site	c.1410-2	e12-2	1.000	-	-	-	no_errors	TTBK2	HGNC	ENSG00000128881				98	0	0	62	30	32.6087
FBN1	0	genome.wustl.edu	37	15	48788332	48788332	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	15	48788332	48788332	C	T	SNP	FBN1	ENST00000316623	human	ensembl	74_37	-1	known	missense	c.2384	p.G795E	1.000	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN1	HGNC	ENSG00000166147				142	0	0	173	11	5.97826
ERN2	0	genome.wustl.edu	37	16	23706580	23706580	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	16	23706580	23706580	C	T	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.1885	p.E629K	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398				74	0	0	58	13	18.3099
PPL	0	genome.wustl.edu	37	16	4934484	4934484	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	16	4934484	4934484	C	T	SNP	PPL	ENST00000345988	human	ensembl	74_37	-1	known	missense	c.4172	p.R1391Q	0.123	NULL	pfam_Plectin_repeat,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	PPL	HGNC	ENSG00000118898				152	0	0	81	46	36.2205
FBXO47	0	genome.wustl.edu	37	17	37107867	37107867	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	17	37107867	37107867	G	A	SNP	FBXO47	ENST00000378079	human	ensembl	74_37	-1	known	missense	c.583	p.R195C	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO47	HGNC	ENSG00000204952				113	0	0	95	55	36.6667
LINC00482	0	genome.wustl.edu	37	17	79278703	79278703	+	RNA	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	17	79278703	79278703	G	A	SNP	LINC00482	ENST00000332012	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00482	HGNC	ENSG00000185168				11	0	0	11	3	21.4286
SERPINB8	0	genome.wustl.edu	37	18	61649024	61649024	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	18	61649024	61649024	G	T	SNP	SERPINB8	ENST00000353706	human	ensembl	74_37	+1	known	nonsense	c.376	p.E126*	1.000	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB8	HGNC	ENSG00000166401				286	0	0	195	85	30.3571
DPF1	0	genome.wustl.edu	37	19	38709248	38709248	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	19	38709248	38709248	C	T	SNP	DPF1	ENST00000355526	human	ensembl	74_37	-1	known	missense	c.562	p.D188N	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF1	HGNC	ENSG00000011332				142	0	0	76	61	44.5255
TRPM4	0	genome.wustl.edu	37	19	49671854	49671854	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	19	49671854	49671854	C	T	SNP	TRPM4	ENST00000598502	human	ensembl	74_37	+1	known	missense	c.476	p.T159M	0.000	NULL	NULL	-	no_errors	TRPM4	HGNC	ENSG00000130529				89	0	0	48	3	5.88235
LRP1B	0	genome.wustl.edu	37	2	141283892	141283892	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	141283892	141283892	C	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.7790	p.R2597H	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				90	0	0	72	15	17.2414
SCN9A	0	genome.wustl.edu	37	2	167055546	167055546	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	167055546	167055546	A	C	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.5606	p.M1869R	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432				242	0	0	200	16	7.40741
TTN	0	genome.wustl.edu	37	2	179654210	179654210	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	179654210	179654210	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.1953	p.A651	0.999	pfam_Titin_Z,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657				167	0	0	119	50	29.5858
SP110	0	genome.wustl.edu	37	2	231067427	231067427	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	231067427	231067427	G	A	SNP	SP110	ENST00000258381	human	ensembl	74_37	-1	known	missense	c.916	p.H306Y	0.000	NULL	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899				301	0	0	252	91	26.5306
FSHR	0	genome.wustl.edu	37	2	49295370	49295370	+	Missense_Mutation	SNP	T	T	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	49295370	49295370	T	C	SNP	FSHR	ENST00000406846	human	ensembl	74_37	-1	known	missense	c.212	p.D71G	1.000	prints_FSH_rcpt,prints_TSH_rcpt	pfam_GPCR_Rhodpsn,pfam_GnHR_TM,pfam_LRR-contain_N,pfam_Leu-rich_rpt,smart_LRR-contain_N,pfscan_GPCR_Rhodpsn_7TM,prints_FSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_TSH_rcpt	-	no_errors	FSHR	HGNC	ENSG00000170820				183	1	0.543478	151	10	6.21118
CCDC85A	0	genome.wustl.edu	37	2	56420153	56420153	+	Missense_Mutation	SNP	C	C	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	2	56420153	56420153	C	G	SNP	CCDC85A	ENST00000407595	human	ensembl	74_37	+1	known	missense	c.818	p.A273G	0.985	NULL	pfam_DUF2216_coiled-coil	-	no_errors	CCDC85A	HGNC	ENSG00000055813				80	0	0	50	9	15.2542
UBE2V1	0	genome.wustl.edu	37	20	48732031	48732031	+	Missense_Mutation	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	20	48732031	48732031	G	T	SNP	UBE2V1	ENST00000340309	human	ensembl	74_37	-1	known	missense	c.82	p.H28N	0.001	NULL	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2V1	HGNC	ENSG00000244687				69	0	0	147	14	8.69565
TSHZ2	0	genome.wustl.edu	37	20	51872060	51872060	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	20	51872060	51872060	C	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2063	p.A688D	0.819	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				55	0	0	136	10	6.84932
TIAM1	0	genome.wustl.edu	37	21	32617948	32617948	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	21	32617948	32617948	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	74_37	-1	known	silent	c.1440	p.D480	0.300	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299				60	0	0	27	13	32.5
TTC3	0	genome.wustl.edu	37	21	38538093	38538093	+	Missense_Mutation	SNP	G	G	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	21	38538093	38538093	G	C	SNP	TTC3	ENST00000354749	human	ensembl	74_37	+1	known	missense	c.3577	p.E1193Q	0.383	NULL	pfam_Znf_C3HC4_RING-type,superfamily_DEATH-like_dom,smart_TPR_repeat,smart_Znf_RING,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	TTC3	HGNC	ENSG00000182670				222	0	0	210	23	9.87124
GTPBP1	0	genome.wustl.edu	37	22	39122390	39122390	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	22	39122390	39122390	G	A	SNP	GTPBP1	ENST00000216044	human	ensembl	74_37	+1	known	missense	c.1346	p.R449H	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel	-	no_errors	GTPBP1	HGNC	ENSG00000100226				86	0	0	57	3	5
SLC15A2	0	genome.wustl.edu	37	3	121648191	121648191	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	3	121648191	121648191	G	A	SNP	SLC15A2	ENST00000489711	human	ensembl	74_37	+1	known	missense	c.1549	p.V517M	0.000	tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A2	HGNC	ENSG00000163406				144	0	0	147	19	11.4458
NAALADL2	0	genome.wustl.edu	37	3	175473204	175473204	+	Silent	SNP	T	T	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	3	175473204	175473204	T	C	SNP	NAALADL2	ENST00000454872	human	ensembl	74_37	+1	known	silent	c.2187	p.Y729	0.996	superfamily_TFR-like_dimer_dom	superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL2	HGNC	ENSG00000177694				18	0	0	20	6	23.0769
CACNA2D3	0	genome.wustl.edu	37	3	55107475	55107475	+	Silent	SNP	C	C	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	3	55107475	55107475	C	G	SNP	CACNA2D3	ENST00000288197	human	ensembl	74_37	+1	known	silent	c.2991	p.S997	1.000	NULL	pfam_VWA_N,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D3	HGNC	ENSG00000157445				96	0	0	69	24	25.8065
UBE2D3	0	genome.wustl.edu	37	4	103747782	103747782	+	RNA	SNP	A	A	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	4	103747782	103747782	A	T	SNP	UBE2D3	ENST00000513098	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBE2D3	HGNC	ENSG00000109332				60	0	0	35	6	14.6341
PDHA2	0	genome.wustl.edu	37	4	96761832	96761832	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	4	96761832	96761832	G	A	SNP	PDHA2	ENST00000295266	human	ensembl	74_37	+1	known	silent	c.531	p.L177	1.000	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	pfam_DH_E1,tigrfam_Pyrv_DH_E1_asu_subgrp-y	-	no_errors	PDHA2	HGNC	ENSG00000163114				128	0	0	99	13	11.6071
EPB41L4A	0	genome.wustl.edu	37	5	111601943	111601943	+	Silent	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	111601943	111601943	C	T	SNP	EPB41L4A	ENST00000261486	human	ensembl	74_37	-1	known	silent	c.420	p.A140	0.002	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	EPB41L4A	HGNC	ENSG00000129595				24	0	0	22	23	51.1111
AFF4	0	genome.wustl.edu	37	5	132272875	132272875	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	132272875	132272875	G	A	SNP	AFF4	ENST00000265343	human	ensembl	74_37	-1	known	missense	c.7	p.R3C	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF4	HGNC	ENSG00000072364				74	0	0	68	15	18.0723
NR3C1	0	genome.wustl.edu	37	5	142689712	142689712	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	142689712	142689712	C	A	SNP	NR3C1	ENST00000231509	human	ensembl	74_37	-1	known	missense	c.1421	p.C474F	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	pfam_Glcrtcd_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Glcrtcd_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR3C1	HGNC	ENSG00000113580				112	0	0	111	14	11.2
SAP30L	0	genome.wustl.edu	37	5	153833058	153833058	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	153833058	153833058	G	A	SNP	SAP30L	ENST00000297109	human	ensembl	74_37	+1	known	missense	c.421	p.E141K	1.000	NULL	NULL	-	no_errors	SAP30L	HGNC	ENSG00000164576				105	0	0	63	24	27.5862
FBXW11	0	genome.wustl.edu	37	5	171305130	171305130	+	Missense_Mutation	SNP	A	A	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	171305130	171305130	A	G	SNP	FBXW11	ENST00000265094	human	ensembl	74_37	-1	known	missense	c.793	p.W265R	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW11	HGNC	ENSG00000072803				101	0	0	64	17	20.9877
CRHBP	0	genome.wustl.edu	37	5	76249963	76249963	+	Silent	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	76249963	76249963	C	T	SNP	CRHBP	ENST00000274368	human	ensembl	74_37	+1	known	silent	c.285	p.I95	0.974	pfam_CRF-bd,superfamily_CUB_dom,pirsf_CRF-bd	pfam_CRF-bd,superfamily_CUB_dom,pirsf_CRF-bd	-	no_errors	CRHBP	HGNC	ENSG00000145708				67	0	0	154	27	14.9171
MSH5	0	genome.wustl.edu	37	6	31729612	31729612	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	6	31729612	31729612	G	A	SNP	MSH5	ENST00000375742	human	ensembl	74_37	+1	known	silent	c.2250	p.E750	1.000	pfam_DNA_mismatch_repair_MutS_C,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_C	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH5	HGNC	ENSG00000204410				386	1	0.258398	439	37	7.77311
PTPRZ1	0	genome.wustl.edu	37	7	121608163	121608163	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	7	121608163	121608163	A	C	SNP	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	missense	c.283	p.I95L	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278				228	0	0	179	11	5.78947
MAGI2	0	genome.wustl.edu	37	7	77998505	77998505	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	7	77998505	77998505	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.1071	p.I357	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391				73	0	0	39	18	31.5789
KRIT1	0	genome.wustl.edu	37	7	91864762	91864762	+	Silent	SNP	A	A	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	7	91864762	91864762	A	G	SNP	KRIT1	ENST00000340022	human	ensembl	74_37	-1	known	silent	c.684	p.C228	1.000	NULL	pfam_FERM_central,superfamily_Ankyrin_rpt-contain_dom,superfamily_FERM_central,smart_Ankyrin_rpt,smart_Band_41_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_FERM_domain	-	no_errors	KRIT1	HGNC	ENSG00000001631				217	0	0	185	17	8.41584
PILRB	0	genome.wustl.edu	37	7	99956991	99956991	+	Nonsense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	7	99956991	99956991	C	T	SNP	PILRB	ENST00000448382	human	ensembl	74_37	+1	known	nonsense	c.643	p.Q215*	0.028	NULL	NULL	-	no_errors	PILRB	HGNC	ENSG00000121716				104	0	0	82	6	6.81818
PINX1	0	genome.wustl.edu	37	8	10623284	10623284	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	8	10623284	10623284	G	A	SNP	PINX1	ENST00000314787	human	ensembl	74_37	-1	known	missense	c.614	p.T205M	0.004	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	PINX1	HGNC	ENSG00000254093				425	0	0	333	20	5.66572
TRPS1	0	genome.wustl.edu	37	8	116426974	116426974	+	Missense_Mutation	SNP	A	A	C			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	8	116426974	116426974	A	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.3162	p.S1054R	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447				240	1	0.414938	264	17	6.04982
PNPLA7	0	genome.wustl.edu	37	9	140437210	140437210	+	Missense_Mutation	SNP	T	T	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	9	140437210	140437210	T	G	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	missense	c.550	p.K184Q	1.000	superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				101	0	0	83	6	6.74157
PTPRD	0	genome.wustl.edu	37	9	8518230	8518230	+	Silent	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	9	8518230	8518230	C	T	SNP	PTPRD	ENST00000356435	human	ensembl	74_37	-1	known	silent	c.1161	p.S387	0.032	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRD	HGNC	ENSG00000153707				298	0	0	202	43	17.551
SEPT6	0	genome.wustl.edu	37	X	118767373	118767373	+	Missense_Mutation	SNP	C	C	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	X	118767373	118767373	C	T	SNP	SEPT6	ENST00000394617	human	ensembl	74_37	-1	known	missense	c.1129	p.V377I	1.000	pirsf_Septin	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	-	no_errors	SEPT6	HGNC	ENSG00000125354				308	0	0	188	137	42.1538
GLUD2	0	genome.wustl.edu	37	X	120182259	120182259	+	Missense_Mutation	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	X	120182259	120182259	G	A	SNP	GLUD2	ENST00000328078	human	ensembl	74_37	+1	known	missense	c.721	p.A241T	1.000	pfam_Glu/Leu/Phe/Val_DH_dimer_dom	pfam_Glu/Leu/Phe/Val_DH_C,pfam_Glu/Leu/Phe/Val_DH_dimer_dom,smart_Glu/Leu/Phe/Val_DH_C,prints_Glu/Leu/Phe/Val_DH	-	no_errors	GLUD2	HGNC	ENSG00000182890				134	1	0.740741	91	20	18.018
ASMT	0	genome.wustl.edu	37	X	1743214	1743214	+	Silent	SNP	G	G	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	X	1743214	1743214	G	A	SNP	ASMT	ENST00000381241	human	ensembl	74_37	+1	known	silent	c.297	p.P99	0.990	pfam_O_MeTrfase_2,pirsf_COMT	pfam_O_MeTrfase_2,pirsf_COMT	-	no_errors	ASMT	HGNC	ENSG00000196433				285	0	0	129	65	33.5052
HEPH	0	genome.wustl.edu	37	X	65476001	65476001	+	Nonsense_Mutation	SNP	G	G	T			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	X	65476001	65476001	G	T	SNP	HEPH	ENST00000519389	human	ensembl	74_37	+1	known	nonsense	c.2887	p.E963*	0.025	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472				75	0	0	57	5	8.06452
AR	0	genome.wustl.edu	37	X	66941727	66941727	+	Missense_Mutation	SNP	C	C	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	X	66941727	66941727	C	A	SNP	AR	ENST00000374690	human	ensembl	74_37	+1	known	missense	c.2371	p.L791I	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083				77	0	0	70	4	5.40541
PYGO2	0	genome.wustl.edu	37	1	154932096	154932097	+	Frame_Shift_Ins	INS	-	-	G			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	154932096	154932097	-	G	INS	PYGO2	ENST00000368457	human	ensembl	74_37	-1	known	frame_shift_ins	c.380_379	p.Q127fs	1.000:1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	PYGO2	HGNC	ENSG00000163348				39	0	0	33	8	19.5122
KIAA0754	0	genome.wustl.edu	37	1	39877376	39877377	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	1	39877376	39877377	-	A	INS	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	frame_shift_ins	c.1031_1032	p.T345fs	0.099:0.001	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103				165	0	0	145	57	28.2178
TP53	0	genome.wustl.edu	37	17	7577594	7577595	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	17	7577594	7577595	AC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.687_686	p.C229fs	0.879:0.864	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				65	0	0	26	16	38.0952
SPINK5	0	genome.wustl.edu	37	5	147475439	147475440	+	Frame_Shift_Ins	INS	-	-	A			TCGA-CG-5732-01A-11D-1600-08	TCGA-CG-5732-11A-01D-1600-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f9d3009-0ba7-40d5-a7fc-7314d364501e	247876be-3fc0-4bfc-b0c0-a1a9b184879d	5	147475439	147475440	-	A	INS	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	frame_shift_ins	c.853_854	p.T287fs	0.350:0.284	NULL	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710				119	0	0	80	18	18.3673
