Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RBM15	0	genome.wustl.edu	37	1	110883151	110883151	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	110883151	110883151	C	T	SNP	RBM15	ENST00000369784	human	ensembl	74_37	+1	known	missense	c.1124	p.T375M	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_SPOC_C,pfam_RRM_dom,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	RBM15	HGNC	ENSG00000162775				69	0	0	28	13	31.7073
CADM3	0	genome.wustl.edu	37	1	159162373	159162373	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	159162373	159162373	C	T	SNP	CADM3	ENST00000368124	human	ensembl	74_37	+1	known	nonsense	c.337	p.R113*	1.000	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like_dom	-	no_errors	CADM3	HGNC	ENSG00000162706				97	0	0	39	16	29.0909
CROCCP2	0	genome.wustl.edu	37	1	16955128	16955128	+	RNA	SNP	A	A	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	16955128	16955128	A	G	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.562	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908				20	0	0	11	3	21.4286
ADCK3	0	genome.wustl.edu	37	1	227171740	227171740	+	RNA	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	227171740	227171740	G	A	SNP	ADCK3	ENST00000478406	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ADCK3	HGNC	ENSG00000163050				27	0	0	7	6	46.1538
TINAGL1	0	genome.wustl.edu	37	1	32042921	32042921	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	32042921	32042921	C	G	SNP	TINAGL1	ENST00000271064	human	ensembl	74_37	+1	known	missense	c.172	p.R58G	1.000	pfscan_Somatomedin_B_dom	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C,pfscan_Somatomedin_B_dom	-	no_errors	TINAGL1	HGNC	ENSG00000142910				139	0	0	32	17	34.6939
PTGFR	0	genome.wustl.edu	37	1	78958499	78958499	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	78958499	78958499	C	A	SNP	PTGFR	ENST00000370757	human	ensembl	74_37	+1	known	missense	c.71	p.T24K	0.996	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_PglndnF_rcpt,prints_Prostanoid_rcpt,prints_Thbox_rcpt,prints_GPCR_Rhodpsn	-	no_errors	PTGFR	HGNC	ENSG00000122420				99	0	0	31	15	32.6087
ZNF408	0	genome.wustl.edu	37	11	46726259	46726259	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	46726259	46726259	C	G	SNP	ZNF408	ENST00000311764	human	ensembl	74_37	+1	known	missense	c.1009	p.R337G	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF408	HGNC	ENSG00000175213				164	0	0	54	28	34.1463
OR4A47	0	genome.wustl.edu	37	11	48510483	48510483	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	48510483	48510483	G	A	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	missense	c.139	p.V47I	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388				50	0	0	18	11	37.931
PHRF1	0	genome.wustl.edu	37	11	609019	609019	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	609019	609019	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.3563	p.R1188Q	0.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047				19	0	0	9	11	55
DAK	0	genome.wustl.edu	37	11	61102195	61102195	+	RNA	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	61102195	61102195	C	T	SNP	DAK	ENST00000525170	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.908	-	-	-	no_errors	DAK	HGNC	ENSG00000149476				62	0	0	26	8	23.5294
TRMT112	0	genome.wustl.edu	37	11	64084799	64084799	+	Nonsense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	64084799	64084799	G	A	SNP	TRMT112	ENST00000535126	human	ensembl	74_37	-1	putative	nonsense	c.166	p.Q56*	0.628	NULL	NULL	-	no_errors	TRMT112	HGNC	ENSG00000173113				122	0	0	67	24	26.3736
KDM2A	0	genome.wustl.edu	37	11	67021038	67021038	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	67021038	67021038	A	G	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	missense	c.3047	p.D1016G	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120				160	0	0	78	24	23.5294
CARNS1	0	genome.wustl.edu	37	11	67191316	67191316	+	Silent	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	67191316	67191316	C	T	SNP	CARNS1	ENST00000445895	human	ensembl	74_37	+1	known	silent	c.2097	p.S699	0.970	pfscan_ATP-grasp	superfamily_PreATP-grasp_dom,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508				54	0	0	27	7	20.5882
USP35	0	genome.wustl.edu	37	11	77921697	77921697	+	Silent	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	77921697	77921697	G	A	SNP	USP35	ENST00000529308	human	ensembl	74_37	+1	known	silent	c.2796	p.E932	0.000	NULL	pfam_Peptidase_C19/C67,superfamily_ARM-type_fold,pfscan_Peptidase_C19/C67	-	no_errors	USP35	HGNC	ENSG00000118369				125	0	0	65	25	27.7778
TCTN1	0	genome.wustl.edu	37	12	111052045	111052045	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	12	111052045	111052045	G	A	SNP	TCTN1	ENST00000397659	human	ensembl	74_37	+1	known	missense	c.58	p.V20M	0.016	NULL	pfam_DUF1619	-	no_errors	TCTN1	HGNC	ENSG00000204852				19	0	0	10	8	44.4444
OR6C1	0	genome.wustl.edu	37	12	55714592	55714592	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	12	55714592	55714592	C	T	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	missense	c.209	p.S70L	0.007	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330				61	0	0	33	12	26.6667
A2M	0	genome.wustl.edu	37	12	9264996	9264996	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	12	9264996	9264996	G	T	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	nonsense	c.407	p.S136*	0.992	pfam_A2M_N,superfamily_Cupredoxin	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899				65	0	0	27	8	22.8571
SLITRK1	0	genome.wustl.edu	37	13	84453672	84453672	+	Silent	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	13	84453672	84453672	G	A	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	silent	c.1971	p.S657	0.846	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235				65	0	0	20	7	25.9259
SDR39U1	0	genome.wustl.edu	37	14	24909808	24909808	+	Splice_Site	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	14	24909808	24909808	C	T	SNP	SDR39U1	ENST00000553930	human	ensembl	74_37	-1	putative	splice_site	c.1-1	e1-1	0.000	-	-	-	no_errors	SDR39U1	HGNC	ENSG00000100445				14	0	0	0	2	100
GOLGA6L5	0	genome.wustl.edu	37	15	85053188	85053188	+	RNA	SNP	C	C	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	15	85053188	85053188	C	G	SNP	GOLGA6L5	ENST00000414190	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GOLGA6L5	HGNC	ENSG00000230373				15	0	0	2	4	66.6667
NTRK3	0	genome.wustl.edu	37	15	88680668	88680668	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	15	88680668	88680668	G	A	SNP	NTRK3	ENST00000360948	human	ensembl	74_37	-1	known	missense	c.589	p.L197F	0.999	smart_Cys-rich_flank_reg_C	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_LRR-contain_N,superfamily_Kinase-like_dom,smart_LRR-contain_N,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Tyr_kinase_NGF_rcpt,prints_Tyr_kin_neurotrophic_rcpt_3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NTRK3	HGNC	ENSG00000140538				67	0	0	33	45	57.6923
ARHGDIG	0	genome.wustl.edu	37	16	332693	332693	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	16	332693	332693	C	T	SNP	ARHGDIG	ENST00000219409	human	ensembl	74_37	+1	known	missense	c.557	p.A186V	0.987	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	pfam_Rho_GDI,superfamily_Ig_E-set,prints_Rho_GDI	-	no_errors	ARHGDIG	HGNC	ENSG00000242173				21	0	0	13	7	35
CREBBP	0	genome.wustl.edu	37	16	3781465	3781465	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	16	3781465	3781465	C	T	SNP	CREBBP	ENST00000262367	human	ensembl	74_37	-1	known	missense	c.4900	p.V1634M	1.000	pfam_Histone_H3-K56_AcTrfase_RTT109	pfam_Histone_H3-K56_AcTrfase_RTT109,pfam_Nuc_rcpt_coact_CREBbp,pfam_KIX_dom,pfam_DUF902_CREBbp,pfam_Znf_TAZ,pfam_Bromodomain,pfam_Znf_ZZ,superfamily_Bromodomain,superfamily_Znf_TAZ,superfamily_KIX_dom,superfamily_Nuc_rcpt_coact,superfamily_Znf_FYVE_PHD,smart_Znf_TAZ,smart_Bromodomain,smart_Znf_ZZ,pfscan_KIX_dom,pfscan_Znf_TAZ,pfscan_Znf_ZZ,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	CREBBP	HGNC	ENSG00000005339				19	0	0	5	7	58.3333
DNAAF1	0	genome.wustl.edu	37	16	84209614	84209614	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	16	84209614	84209614	C	A	SNP	DNAAF1	ENST00000378553	human	ensembl	74_37	+1	known	missense	c.1774	p.L592I	0.103	NULL	NULL	-	no_errors	DNAAF1	HGNC	ENSG00000154099				104	0	0	17	15	46.875
DNAH9	0	genome.wustl.edu	37	17	11687794	11687794	+	Silent	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	17	11687794	11687794	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	silent	c.7999	p.L2667	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174				250	0	0	113	22	16.2963
C17orf75	0	genome.wustl.edu	37	17	30660530	30660530	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	17	30660530	30660530	C	T	SNP	C17orf75	ENST00000225805	human	ensembl	74_37	-1	known	missense	c.881	p.R294Q	1.000	NULL	NULL	-	no_errors	C17orf75	HGNC	ENSG00000108666				232	0	0	47	25	34.7222
KRT24	0	genome.wustl.edu	37	17	38859549	38859549	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	17	38859549	38859549	C	T	SNP	KRT24	ENST00000264651	human	ensembl	74_37	-1	known	missense	c.397	p.G133R	0.988	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT24	HGNC	ENSG00000167916				420	0	0	147	80	35.2423
ERN1	0	genome.wustl.edu	37	17	62144105	62144105	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	17	62144105	62144105	C	T	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	missense	c.768	p.M256I	1.000	NULL	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607				51	0	0	28	7	20
SLC44A2	0	genome.wustl.edu	37	19	10754028	10754028	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	19	10754028	10754028	G	T	SNP	SLC44A2	ENST00000335757	human	ensembl	74_37	+1	known	missense	c.2088	p.L696F	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A2	HGNC	ENSG00000129353				41	0	0	12	3	20
KIAA0355	0	genome.wustl.edu	37	19	34824689	34824689	+	Silent	SNP	T	T	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	19	34824689	34824689	T	A	SNP	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	silent	c.1344	p.V448	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398				129	0	0	36	22	37.931
SAE1	0	genome.wustl.edu	37	19	47700550	47700550	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	19	47700550	47700550	A	T	SNP	SAE1	ENST00000270225	human	ensembl	74_37	+1	known	missense	c.794	p.D265V	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,prints_UBQ/SUMO-activ_enz_E1-like	-	no_errors	SAE1	HGNC	ENSG00000142230				187	0	0	60	27	31.0345
MCOLN1	0	genome.wustl.edu	37	19	7593728	7593728	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	19	7593728	7593728	C	T	SNP	MCOLN1	ENST00000264079	human	ensembl	74_37	+1	known	missense	c.1006	p.R336W	0.504	NULL	pfam_PKD1_2_channel,superfamily_Glycoside_hydrolase_SF	-	no_errors	MCOLN1	HGNC	ENSG00000090674				72	0	0	28	6	17.6471
COL3A1	0	genome.wustl.edu	37	2	189863014	189863014	+	Missense_Mutation	SNP	C	C	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	2	189863014	189863014	C	G	SNP	COL3A1	ENST00000304636	human	ensembl	74_37	+1	known	missense	c.1946	p.P649R	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542				53	0	0	5	13	72.2222
SLC23A3	0	genome.wustl.edu	37	2	220026773	220026773	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	2	220026773	220026773	A	G	SNP	SLC23A3	ENST00000455516	human	ensembl	74_37	-1	known	missense	c.1715	p.L572P	0.104	NULL	pfam_Xant/urac/vitC	-	no_errors	SLC23A3	HGNC	ENSG00000213901				73	0	0	29	2	6.45161
ABCG5	0	genome.wustl.edu	37	2	44059008	44059008	+	Splice_Site	SNP	T	T	G			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	2	44059008	44059008	T	G	SNP	ABCG5	ENST00000260645	human	ensembl	74_37	-1	known	splice_site	c.403-2	e4-2	1.000	-	-	-	no_errors	ABCG5	HGNC	ENSG00000138075				9	0	0	6	9	60
PARVB	0	genome.wustl.edu	37	22	44395434	44395434	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	22	44395434	44395434	G	A	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	missense	c.92	p.R31H	0.000	NULL	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677				168	0	0	20	24	54.5455
YTHDC2	0	genome.wustl.edu	37	5	112868584	112868584	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	112868584	112868584	G	T	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.684	p.Q228H	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188				78	0	0	18	10	35.7143
SH3RF2	0	genome.wustl.edu	37	5	145435659	145435659	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	145435659	145435659	C	T	SNP	SH3RF2	ENST00000359120	human	ensembl	74_37	+1	known	missense	c.1438	p.R480C	0.157	superfamily_SH3_domain	pfam_SH3_2,pfam_SH3_domain,pfam_Znf_C3HC4_RING-type,superfamily_SH3_domain,smart_Znf_RING,smart_SH3_domain,pfscan_SH3_domain,pfscan_Znf_RING,prints_SH3_domain	-	no_errors	SH3RF2	HGNC	ENSG00000156463				266	0	0	117	35	23.0263
FAT2	0	genome.wustl.edu	37	5	150901209	150901209	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	150901209	150901209	G	A	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	missense	c.10945	p.R3649W	1.000	NULL	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570				53	0	0	25	13	34.2105
DOCK2	0	genome.wustl.edu	37	5	169141406	169141406	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	169141406	169141406	T	C	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.1886	p.L629P	0.903	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516				211	0	0	66	45	40.5405
CDH10	0	genome.wustl.edu	37	5	24487742	24487742	+	RNA	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	24487742	24487742	C	A	SNP	CDH10	ENST00000502921	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.447	-	-	-	no_errors	CDH10	HGNC	ENSG00000040731				154	0	0	41	26	38.806
MAP1B	0	genome.wustl.edu	37	5	71495819	71495819	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	71495819	71495819	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.6637	p.R2213C	0.996	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				283	0	0	96	45	31.9149
ERAP1	0	genome.wustl.edu	37	5	96116195	96116195	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	5	96116195	96116195	A	C	SNP	ERAP1	ENST00000296754	human	ensembl	74_37	-1	known	missense	c.2602	p.S868A	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ERAP1	HGNC	ENSG00000164307				89	0	0	40	9	18.3673
PAK1IP1	0	genome.wustl.edu	37	6	10703648	10703648	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	6	10703648	10703648	C	A	SNP	PAK1IP1	ENST00000379568	human	ensembl	74_37	+1	known	missense	c.454	p.L152I	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	PAK1IP1	HGNC	ENSG00000111845				47	0	0	17	2	10.5263
SNAP91	0	genome.wustl.edu	37	6	84291982	84291982	+	Missense_Mutation	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	6	84291982	84291982	G	T	SNP	SNAP91	ENST00000369694	human	ensembl	74_37	-1	known	missense	c.2108	p.T703K	0.996	NULL	pfam_ANTH_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,pfscan_Epsin-like_N	-	no_errors	SNAP91	HGNC	ENSG00000065609				104	1	0.952381	38	19	33.3333
MEST	0	genome.wustl.edu	37	7	130144838	130144838	+	Nonsense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	130144838	130144838	C	T	SNP	MEST	ENST00000223215	human	ensembl	74_37	+1	known	nonsense	c.949	p.Q317*	1.000	pfam_AB_hydrolase_1	pfam_AB_hydrolase_1,pfam_DUF1057,prints_Epox_hydrolase-like	-	no_errors	MEST	HGNC	ENSG00000106484				235	0	0	32	37	53.6232
KLRG2	0	genome.wustl.edu	37	7	139168251	139168251	+	Silent	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	139168251	139168251	G	A	SNP	KLRG2	ENST00000340940	human	ensembl	74_37	-1	known	silent	c.138	p.S46	0.525	NULL	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRG2	HGNC	ENSG00000188883				86	0	0	21	2	8.69565
IKZF1	0	genome.wustl.edu	37	7	50459524	50459524	+	Silent	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	50459524	50459524	C	T	SNP	IKZF1	ENST00000331340	human	ensembl	74_37	+1	known	silent	c.813	p.V271	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF1	HGNC	ENSG00000185811				53	0	0	19	28	59.5745
ZNF716	0	genome.wustl.edu	37	7	57522201	57522201	+	Silent	SNP	T	T	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	57522201	57522201	T	C	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	silent	c.75	p.F25	0.036	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111				98	0	0	27	25	48.0769
CALN1	0	genome.wustl.edu	37	7	71488683	71488683	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	71488683	71488683	C	T	SNP	CALN1	ENST00000395275	human	ensembl	74_37	-1	known	missense	c.460	p.D154N	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALN1	HGNC	ENSG00000183166				139	0	0	73	17	18.8889
HGF	0	genome.wustl.edu	37	7	81372752	81372752	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	81372752	81372752	C	T	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.782	p.R261H	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991				75	0	0	19	12	38.7097
DPYS	0	genome.wustl.edu	37	8	105459627	105459627	+	Silent	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	8	105459627	105459627	G	A	SNP	DPYS	ENST00000351513	human	ensembl	74_37	-1	known	silent	c.528	p.Y176	0.001	pfam_Amidohydro_1,tigrfam_Hydantoinase/dihydroPyrase	pfam_Amidohydro_1,superfamily_Metal-dep_hydrolase_composite,tigrfam_Hydantoinase/dihydroPyrase	-	no_errors	DPYS	HGNC	ENSG00000147647				87	0	0	27	12	30.7692
MSR1	0	genome.wustl.edu	37	8	15967658	15967658	+	Missense_Mutation	SNP	A	A	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	8	15967658	15967658	A	C	SNP	MSR1	ENST00000262101	human	ensembl	74_37	-1	known	missense	c.1292	p.I431S	0.002	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_SRCR,pfscan_SRCR	-	no_errors	MSR1	HGNC	ENSG00000038945				134	0	0	17	27	61.3636
PTK2B	0	genome.wustl.edu	37	8	27293800	27293800	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	8	27293800	27293800	G	A	SNP	PTK2B	ENST00000346049	human	ensembl	74_37	+1	known	missense	c.1276	p.V426I	0.919	pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899				377	0	0	53	50	48.5437
CSMD1	0	genome.wustl.edu	37	8	2886955	2886955	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	8	2886955	2886955	C	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.7744	p.G2582C	0.943	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117				32	0	0	15	3	16.6667
C9orf43	0	genome.wustl.edu	37	9	116191236	116191236	+	Silent	SNP	T	T	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	9	116191236	116191236	T	C	SNP	C9orf43	ENST00000288462	human	ensembl	74_37	+1	known	silent	c.1164	p.S388	0.000	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653				114	0	0	29	6	17.1429
TOR2A	0	genome.wustl.edu	37	9	130496680	130496680	+	Silent	SNP	C	C	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	9	130496680	130496680	C	A	SNP	TOR2A	ENST00000373284	human	ensembl	74_37	-1	known	silent	c.315	p.L105	1.000	pirsf_Torsin_subgr,pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	pirsf_Torsin_subgr,pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase,prints_ClpA/B	-	no_errors	TOR2A	HGNC	ENSG00000160404				98	0	0	31	2	6.06061
QSOX2	0	genome.wustl.edu	37	9	139100598	139100598	+	Silent	SNP	G	G	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	9	139100598	139100598	G	C	SNP	QSOX2	ENST00000358701	human	ensembl	74_37	-1	known	silent	c.2073	p.V691	0.012	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661				117	0	0	19	28	59.5745
SPATA31E1	0	genome.wustl.edu	37	9	90502005	90502005	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	9	90502005	90502005	C	T	SNP	SPATA31E1	ENST00000325643	human	ensembl	74_37	+1	known	missense	c.2603	p.P868L	0.000	NULL	NULL	-	no_errors	SPATA31E1	HGNC	ENSG00000177992				57	0	0	32	4	11.1111
GPRASP1	0	genome.wustl.edu	37	X	101908902	101908902	+	Nonsense_Mutation	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	X	101908902	101908902	G	T	SNP	GPRASP1	ENST00000361600	human	ensembl	74_37	+1	known	nonsense	c.61	p.E21*	0.874	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP1	HGNC	ENSG00000198932				180	0	0	28	54	65.8537
SLITRK4	0	genome.wustl.edu	37	X	142717775	142717775	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	X	142717775	142717775	C	T	SNP	SLITRK4	ENST00000338017	human	ensembl	74_37	-1	known	missense	c.1150	p.V384I	0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK4	HGNC	ENSG00000179542				125	0	0	23	31	57.4074
MAGEA12	0	genome.wustl.edu	37	X	151900012	151900012	+	Silent	SNP	G	G	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	X	151900012	151900012	G	T	SNP	MAGEA12	ENST00000357916	human	ensembl	74_37	-1	known	silent	c.789	p.G263	0.049	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA12	HGNC	ENSG00000213401				175	0	0	39	84	68.2927
PCDH11X	0	genome.wustl.edu	37	X	91132496	91132496	+	Missense_Mutation	SNP	G	G	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	X	91132496	91132496	G	C	SNP	PCDH11X	ENST00000373094	human	ensembl	74_37	+1	known	missense	c.1257	p.E419D	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290				105	0	0	14	36	72
PCDH11Y	0	genome.wustl.edu	37	Y	4968065	4968065	+	Missense_Mutation	SNP	G	G	C			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	Y	4968065	4968065	G	C	SNP	PCDH11Y	ENST00000215473	human	ensembl	74_37	+1	known	missense	c.2446	p.E816Q	1.000	pfam_Protocadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11Y	HGNC	ENSG00000099715				89	0	0	19	33	63.4615
MAPKAPK2	0	genome.wustl.edu	37	1	206904645	206904646	+	RNA	DEL	GT	GT	-			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	206904645	206904646	GT	-	DEL	MAPKAPK2	ENST00000479009	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MAPKAPK2	HGNC	ENSG00000162889				47	0	0	22	4	15.3846
ZSWIM5	0	genome.wustl.edu	37	1	45500007	45500008	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	1	45500007	45500008	-	A	INS	ZSWIM5	ENST00000359600	human	ensembl	74_37	-1	known	frame_shift_ins	c.2426_2425	p.S809fs	1.000:1.000	NULL	pfscan_Znf_SWIM	-	no_errors	ZSWIM5	HGNC	ENSG00000162415				244	0	0	148	40	21.2766
ATM	0	genome.wustl.edu	37	11	108172425	108172426	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	108172425	108172426	-	A	INS	ATM	ENST00000278616	human	ensembl	74_37	+1	known	frame_shift_ins	c.5228_5229	p.T1745fs	1.000:0.997	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311				171	0	0	16	11	40.7407
IPO7	0	genome.wustl.edu	37	11	9446754	9446755	+	Frame_Shift_Ins	INS	-	-	A			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	11	9446754	9446755	-	A	INS	IPO7	ENST00000379719	human	ensembl	74_37	+1	known	frame_shift_ins	c.1280_1281	p.D430fs	1.000:0.059	pfam_Cse1,superfamily_ARM-type_fold	pfam_Importin-beta_N,pfam_Cse1,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO7	HGNC	ENSG00000205339				97	0	0	29	5	14.7059
SP7	0	genome.wustl.edu	37	12	53722839	53722840	+	Frame_Shift_Ins	INS	-	-	AGAG			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	12	53722839	53722840	-	AGAG	INS	SP7	ENST00000303846	human	ensembl	74_37	-1	known	frame_shift_ins	c.387_386	p.D130fs	0.999:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP7	HGNC	ENSG00000170374				85	0	0	27	9	25
OR10G3	0	genome.wustl.edu	37	14	22038803	22038804	+	Frame_Shift_Ins	INS	-	-	CCTTA			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	14	22038803	22038804	-	CCTTA	INS	OR10G3	ENST00000303532	human	ensembl	74_37	-1	known	frame_shift_ins	c.73_72	p.T24fs	0.017:0.117	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G3	HGNC	ENSG00000169208				137	0	0	43	11	20.3704
CCDC43	0	genome.wustl.edu	37	17	42756252	42756253	+	Frame_Shift_Ins	INS	-	-	T			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	17	42756252	42756253	-	T	INS	CCDC43	ENST00000315286	human	ensembl	74_37	-1	known	frame_shift_ins	c.647_646	p.R216fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329				57	0	0	19	3	13.6364
LETM1	0	genome.wustl.edu	37	4	1821128	1821130	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	4	1821128	1821130	CTT	-	DEL	LETM1	ENST00000302787	human	ensembl	74_37	-1	known	in_frame_del	c.1680_1678	p.K560in_frame_del	0.653:0.654:0.678	NULL	pfam_LETM1,pfscan_EF_hand_dom	-	no_errors	LETM1	HGNC	ENSG00000168924				198	0	0	33	21	38.8889
MICAL1	0	genome.wustl.edu	37	6	109770634	109770636	+	In_Frame_Del	DEL	GTT	GTT	-			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	GTT	GTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	6	109770634	109770636	GTT	-	DEL	MICAL1	ENST00000368952	human	ensembl	74_37	-1	known	in_frame_del	c.1542_1540	p.N514in_frame_del	0.010:0.001:0.002	superfamily_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM	-	no_errors	MICAL1	HGNC	ENSG00000135596				230	0	0	100	33	24.812
CARD11	0	genome.wustl.edu	37	7	2963941	2963943	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-D7-8575-01A-11D-2340-08	TCGA-D7-8575-10A-01D-2341-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b0129d2a-9f88-4283-9939-d21510769627	121d09e2-8ac7-45cd-9e5e-d9261a7b50ec	7	2963941	2963943	GGA	-	DEL	CARD11	ENST00000396946	human	ensembl	74_37	-1	known	in_frame_del	c.1866_1864	p.S622in_frame_del	0.998:1.000:1.000	NULL	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286				131	0	0	83	6	6.74157
