Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACTN4	0	genome.wustl.edu	37	19	39207769	39207769	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	39207769	39207769	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.956	p.R319H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402	tier1	-	-	48	0	0.00	56	5	8.20
ADCYAP1R1	0	genome.wustl.edu	37	7	31102892	31102892	+	Silent	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	7	31102892	31102892	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	silent	c.12	p.V4	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	tier1	-	-	86	0	0.00	122	7	5.43
ANKRD44	0	genome.wustl.edu	37	2	197943383	197943384	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	2	197943383	197943384	TG	-	DEL	ANKRD44	ENST00000409153	human	ensembl	74_37	-1	known	frame_shift_del	c.1694_1693	p.H565fs	0.001:0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413	tier1			17	0	0.00	17	4	19.05
ARSH	0	genome.wustl.edu	37	X	2951149	2951149	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	X	2951149	2951149	C	A	SNP	ARSH	ENST00000381130	human	ensembl	74_37	+1	known	nonsense	c.1412	p.S471*	0.006	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSH	HGNC	ENSG00000205667	tier1	-	-	74	0	0.00	82	9	9.89
ATP2B4	0	genome.wustl.edu	37	1	203677138	203677138	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	203677138	203677138	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.1463	p.R488H	0.022	superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	rs199754074	-	171	0	0.00	122	7	5.43
C7orf62	0	genome.wustl.edu	37	7	88423659	88423659	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	7	88423659	88423659	A	G	SNP	C7orf62	ENST00000297203	human	ensembl	74_37	-1	known	silent	c.598	p.L200	0.998	NULL	NULL	-	no_errors	C7orf62	HGNC	ENSG00000164645	tier1	-	-	99	0	0.00	111	6	5.13
CCAR1	0	genome.wustl.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	10	70509285	70509286	GA	-	DEL	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	frame_shift_del	c.961_962	p.R324fs	1.000:1.000	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339	tier1			39	0	0.00	29	2	6.45
CCDC116	0	genome.wustl.edu	37	22	21989249	21989249	+	Silent	SNP	C	C	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	22	21989249	21989249	C	G	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	silent	c.897	p.R299	0.000	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180	tier1	-	-	124	0	0.00	178	13	6.81
CCT3	0	genome.wustl.edu	37	1	156288766	156288766	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	156288766	156288766	C	T	SNP	CCT3	ENST00000295688	human	ensembl	74_37	-1	known	missense	c.652	p.V218I	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468	tier1	-	-	55	0	0.00	61	6	8.96
CYP51A1	0	genome.wustl.edu	37	7	91756819	91756819	+	Frame_Shift_Del	DEL	T	T	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	7	91756819	91756819	T	-	DEL	CYP51A1	ENST00000003100	human	ensembl	74_37	-1	known	frame_shift_del	c.595	p.N199fs	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP51A1	HGNC	ENSG00000001630	tier1			30	0	0.00	22	4	15.38
DACH1	0	genome.wustl.edu	37	13	72440294	72440294	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	13	72440294	72440294	A	G	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.614	p.V205A	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659	tier1	-	-	77	0	0.00	88	6	6.38
EIF3L	0	genome.wustl.edu	37	22	38251635	38251635	+	Silent	SNP	T	T	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	22	38251635	38251635	T	A	SNP	EIF3L	ENST00000412331	human	ensembl	74_37	+1	known	silent	c.357	p.A119	0.349	NULL	pfam_eIF3l	-	no_errors	EIF3L	HGNC	ENSG00000100129	tier1	-	-	30	0	0.00	42	5	10.64
ENSG00000245156	0	genome.wustl.edu	37	11	66039142	66039143	+	RNA	INS	-	-	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	11	66039142	66039143	-	A	INS	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156	tier1			10	0	0.00	8	2	20.00
FOLH1	0	genome.wustl.edu	37	11	49204790	49204790	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	11	49204790	49204790	A	G	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	silent	c.831	p.Y277	1.000	NULL	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	rs76509850	-	61	0	0.00	49	6	10.91
HEATR4	0	genome.wustl.edu	37	14	73959816	73959816	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	14	73959816	73959816	A	G	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.2798	p.L933P	0.003	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105	tier1	-	-	99	0	0.00	91	8	8.08
IGBP1	0	genome.wustl.edu	37	X	69366608	69366608	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	X	69366608	69366608	T	C	SNP	IGBP1	ENST00000342206	human	ensembl	74_37	+1	known	missense	c.608	p.I203T	0.924	pfam_TAP42-like	pfam_TAP42-like	-	no_errors	IGBP1	HGNC	ENSG00000089289				60	0	0.00	60	7	10.45
KIAA1549L	0	genome.wustl.edu	37	11	33604956	33604958	+	In_Frame_Del	DEL	TCA	TCA	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	TCA	TCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	11	33604956	33604958	TCA	-	DEL	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	in_frame_del	c.3602_3604	p.I1205in_frame_del	0.999:0.994:1.000	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427	tier1			19	0	0.00	14	3	17.65
LRRC7	0	genome.wustl.edu	37	1	70501916	70501916	+	Splice_Site	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	70501916	70501916	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	splice_site	c.1993+1	e17+1	1.000	-	-	-	no_errors	LRRC7	HGNC	ENSG00000033122	tier1	-	-	62	0	0.00	56	5	8.20
MSL2	0	genome.wustl.edu	37	3	135913955	135913955	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	135913955	135913955	T	A	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	missense	c.1	p.M1L	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579	tier1	-	-	247	0	0.00	216	12	5.26
NOTCH3	0	genome.wustl.edu	37	19	15289896	15289896	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	15289896	15289896	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.3658	p.R1220W	1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				62	0	0.00	67	4	5.56
PCDHB4	0	genome.wustl.edu	37	5	140503670	140503670	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	5	140503670	140503670	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.2090	p.S697L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	tier1	-	-	307	0	0.00	340	24	6.58
PHACTR3	0	genome.wustl.edu	37	20	58318235	58318235	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	20	58318235	58318235	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	silent	c.192	p.R64	0.997	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	tier1	-	-	113	0	0.00	103	9	8.04
PHACTR3	0	genome.wustl.edu	37	20	58318237	58318237	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	20	58318237	58318237	A	T	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	missense	c.194	p.N65I	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	tier1	-	-	116	0	0.00	102	9	8.11
RHBDF1	0	genome.wustl.edu	37	16	110496	110496	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	16	110496	110496	G	A	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	silent	c.1599	p.S533	0.861	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384	tier1	-	-	114	0	0.00	127	10	7.30
SACM1L	0	genome.wustl.edu	37	3	45745001	45745001	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	45745001	45745001	G	A	SNP	SACM1L	ENST00000389061	human	ensembl	74_37	+1	known	missense	c.104	p.R35H	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	SACM1L	HGNC	ENSG00000211456	tier1	-	-	115	0	0.00	87	6	6.45
SARS2	0	genome.wustl.edu	37	19	39435716	39435716	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	39435716	39435716	C	T	SNP	SARS2	ENST00000448145	human	ensembl	74_37	-1	known	missense	c.91	p.V31I	0.998	pfam_F-box-assoc_dom,superfamily_Galactose-bd-like,pfscan_F-box-assoc_dom	pirsf_Ser-tRNA-ligase_type_1,pfam_F-box-assoc_dom,pfam_aa-tRNA-synt_IIb_cons-dom,superfamily_Galactose-bd-like,superfamily_tRNA-bd_arm,prints_Ser-tRNA-ligase_type_1,pfscan_F-box-assoc_dom,pfscan_aa-tRNA-synth_II,tigrfam_Ser-tRNA-ligase_type_1	-	no_errors	SARS2	HGNC	ENSG00000104835	tier1	-	-	144	0	0.00	166	9	5.11
SOX30	0	genome.wustl.edu	37	5	157078464	157078464	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	5	157078464	157078464	C	A	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.623	p.R208L	0.581	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600	tier1	-	-	212	0	0.00	231	13	5.31
SPATA16	0	genome.wustl.edu	37	3	172674585	172674585	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	172674585	172674585	A	G	SNP	SPATA16	ENST00000351008	human	ensembl	74_37	-1	known	silent	c.963	p.A321	0.385	NULL	NULL	-	no_errors	SPATA16	HGNC	ENSG00000144962	tier1	-	-	67	0	0.00	69	5	6.76
SRRM2	0	genome.wustl.edu	37	16	2815032	2815032	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	16	2815032	2815032	A	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.4503	p.S1501	0.999	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978	tier1	-	-	187	0	0.00	192	11	5.39
SUGP1	0	genome.wustl.edu	37	19	19387471	19387471	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	19387471	19387471	G	A	SNP	SUGP1	ENST00000247001	human	ensembl	74_37	-1	known	missense	c.1924	p.R642W	0.689	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705	tier1	-	-	55	0	0.00	51	7	12.07
TBC1D13	0	genome.wustl.edu	37	9	131565732	131565732	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	9	131565732	131565732	G	A	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	silent	c.747	p.E249	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				53	0	0.00	73	5	6.41
TMCC1	0	genome.wustl.edu	37	3	129389401	129389401	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	129389401	129389401	G	A	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.1283	p.S428L	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765	tier1	-	-	101	0	0.00	110	8	6.78
ZC3H11A	0	genome.wustl.edu	37	1	203819145	203819145	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	203819145	203819145	A	G	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	missense	c.1930	p.R644G	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	tier1	-	-	106	0	0.00	90	5	5.26
CCT3	0	genome.wustl.edu	37	1	156288766	156288766	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	156288766	156288766	C	T	SNP	CCT3	ENST00000295688	human	ensembl	74_37	-1	known	missense	c.652	p.V218I	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,tigrfam_Chap_CCT_gamma	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,superfamily_GroEL-like_apical_dom,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_gamma	-	no_errors	CCT3	HGNC	ENSG00000163468				46	0	0	53	6	10.1695
ATP2B4	0	genome.wustl.edu	37	1	203677138	203677138	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	203677138	203677138	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.1463	p.R488H	0.022	superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668				153	0	0	112	6	5.08475
PODN	0	genome.wustl.edu	37	1	53535762	53535762	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	53535762	53535762	G	A	SNP	PODN	ENST00000312553	human	ensembl	74_37	+1	known	missense	c.379	p.V127I	0.292	smart_LRR-contain_N	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	PODN	HGNC	ENSG00000174348				56	0	0	76	6	7.31707
LRRC7	0	genome.wustl.edu	37	1	70501916	70501916	+	Splice_Site	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	1	70501916	70501916	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	74_37	+1	known	splice_site	c.1993+1	e17+1	1.000	-	-	-	no_errors	LRRC7	HGNC	ENSG00000033122				56	0	0	53	4	7.01754
HSD17B7P2	0	genome.wustl.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	10	38654432	38654432	A	G	SNP	HSD17B7P2	ENST00000494540	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSD17B7P2	HGNC	ENSG00000099251				41	0	0	45	3	6.25
TMX2	0	genome.wustl.edu	37	11	57506511	57506511	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	11	57506511	57506511	G	A	SNP	TMX2	ENST00000278422	human	ensembl	74_37	+1	known	missense	c.614	p.R205Q	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX2	HGNC	ENSG00000213593				103	0	0	85	5	5.55556
DACH1	0	genome.wustl.edu	37	13	72440294	72440294	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	13	72440294	72440294	A	G	SNP	DACH1	ENST00000359684	human	ensembl	74_37	-1	known	missense	c.614	p.V205A	1.000	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH1	HGNC	ENSG00000165659				65	0	0	76	5	6.17284
HEATR4	0	genome.wustl.edu	37	14	73959816	73959816	+	Missense_Mutation	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	14	73959816	73959816	A	G	SNP	HEATR4	ENST00000334988	human	ensembl	74_37	-1	known	missense	c.2798	p.L933P	0.003	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	HEATR4	HGNC	ENSG00000187105				87	0	0	83	6	6.74157
DNM1P47	0	genome.wustl.edu	37	15	102304772	102304772	+	RNA	SNP	T	T	C			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	15	102304772	102304772	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.984	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660				17	0	0	26	3	10.3448
RHBDF1	0	genome.wustl.edu	37	16	110496	110496	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	16	110496	110496	G	A	SNP	RHBDF1	ENST00000262316	human	ensembl	74_37	-1	known	silent	c.1599	p.S533	0.861	NULL	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF1	HGNC	ENSG00000007384				107	0	0	113	9	7.37705
SRRM2	0	genome.wustl.edu	37	16	2815032	2815032	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	16	2815032	2815032	A	G	SNP	SRRM2	ENST00000301740	human	ensembl	74_37	+1	known	silent	c.4503	p.S1501	0.999	NULL	pfam_mRNA_splic_Cwf21	-	no_errors	SRRM2	HGNC	ENSG00000167978				170	0	0	165	9	5.17241
CHD3	0	genome.wustl.edu	37	17	7809274	7809274	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	17	7809274	7809274	G	A	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.4325	p.R1442Q	1.000	pfam_DUF1086	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				58	0	0	84	8	8.69565
ROCK1	0	genome.wustl.edu	37	18	18548822	18548822	+	Splice_Site	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	18	18548822	18548822	C	T	SNP	ROCK1	ENST00000399799	human	ensembl	74_37	-1	known	splice_site	c.2915-1	e25-1	1.000	-	-	-	no_errors	ROCK1	HGNC	ENSG00000067900				78	0	0	60	4	6.25
NOTCH3	0	genome.wustl.edu	37	19	15289896	15289896	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	15289896	15289896	G	A	SNP	NOTCH3	ENST00000263388	human	ensembl	74_37	-1	known	missense	c.3658	p.R1220W	1.000	pirsf_Notch,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_3,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181				58	0	0	62	4	6.06061
SUGP1	0	genome.wustl.edu	37	19	19387471	19387471	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	19387471	19387471	G	A	SNP	SUGP1	ENST00000247001	human	ensembl	74_37	-1	known	missense	c.1924	p.R642W	0.689	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705				49	0	0	44	7	13.7255
ACTN4	0	genome.wustl.edu	37	19	39207769	39207769	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	39207769	39207769	G	A	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.956	p.R319H	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402				42	0	0	45	4	8.16327
DHX34	0	genome.wustl.edu	37	19	47861151	47861151	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	19	47861151	47861151	C	T	SNP	DHX34	ENST00000328771	human	ensembl	74_37	+1	known	missense	c.1046	p.P349L	0.473	superfamily_P-loop_NTPase	pfam_Helicase-assoc_dom,pfam_DUF1605,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX34	HGNC	ENSG00000134815				48	0	0	53	3	5.35714
PHACTR3	0	genome.wustl.edu	37	20	58318235	58318235	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	20	58318235	58318235	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	silent	c.192	p.R64	0.997	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				110	0	0	100	8	7.40741
PHACTR3	0	genome.wustl.edu	37	20	58318237	58318237	+	Missense_Mutation	SNP	A	A	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	20	58318237	58318237	A	T	SNP	PHACTR3	ENST00000371015	human	ensembl	74_37	+1	known	missense	c.194	p.N65I	1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495				113	0	0	99	8	7.47664
CCDC116	0	genome.wustl.edu	37	22	21989249	21989249	+	Silent	SNP	C	C	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	22	21989249	21989249	C	G	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	silent	c.897	p.R299	0.000	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180				108	0	0	152	12	7.31707
EIF3L	0	genome.wustl.edu	37	22	38251635	38251635	+	Silent	SNP	T	T	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	22	38251635	38251635	T	A	SNP	EIF3L	ENST00000412331	human	ensembl	74_37	+1	known	silent	c.357	p.A119	0.349	NULL	pfam_eIF3l	-	no_errors	EIF3L	HGNC	ENSG00000100129				27	0	0	34	3	8.10811
TMCC1	0	genome.wustl.edu	37	3	129389401	129389401	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	129389401	129389401	G	A	SNP	TMCC1	ENST00000393238	human	ensembl	74_37	-1	known	missense	c.1283	p.S428L	1.000	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2	-	no_errors	TMCC1	HGNC	ENSG00000172765				94	0	0	107	8	6.95652
MSL2	0	genome.wustl.edu	37	3	135913955	135913955	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	135913955	135913955	T	A	SNP	MSL2	ENST00000309993	human	ensembl	74_37	-1	known	missense	c.1	p.M1L	1.000	NULL	pfscan_Znf_RING	-	no_errors	MSL2	HGNC	ENSG00000174579				226	0	0	187	10	5.07614
SENP5	0	genome.wustl.edu	37	3	196612955	196612955	+	Silent	SNP	T	T	C			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	196612955	196612955	T	C	SNP	SENP5	ENST00000323460	human	ensembl	74_37	+1	known	silent	c.903	p.C301	0.475	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP5	HGNC	ENSG00000119231				102	0	0	123	7	5.38462
SACM1L	0	genome.wustl.edu	37	3	45745001	45745001	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	45745001	45745001	G	A	SNP	SACM1L	ENST00000389061	human	ensembl	74_37	+1	known	missense	c.104	p.R35H	1.000	NULL	pfam_Syja_N,pfscan_Syja_N	-	no_errors	SACM1L	HGNC	ENSG00000211456				96	0	0	73	4	5.19481
DCP1A	0	genome.wustl.edu	37	3	53324883	53324883	+	Missense_Mutation	SNP	T	T	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	3	53324883	53324883	T	A	SNP	DCP1A	ENST00000607628	human	ensembl	74_37	-1	known	missense	c.1387	p.M463L	1.000	NULL	pfam_DCP1	-	no_errors	DCP1A	HGNC	ENSG00000162290				18	0	0	20	3	13.0435
PCDHB4	0	genome.wustl.edu	37	5	140503670	140503670	+	Missense_Mutation	SNP	C	C	T			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	5	140503670	140503670	C	T	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.2090	p.S697L	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818				271	0	0	304	18	5.59006
GRIA1	0	genome.wustl.edu	37	5	153056676	153056676	+	Silent	SNP	T	T	C			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	5	153056676	153056676	T	C	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	silent	c.1014	p.A338	0.907	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511				34	0	0	35	4	10.2564
SOX30	0	genome.wustl.edu	37	5	157078464	157078464	+	Missense_Mutation	SNP	C	C	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	5	157078464	157078464	C	A	SNP	SOX30	ENST00000265007	human	ensembl	74_37	-1	known	missense	c.623	p.R208L	0.581	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX30	HGNC	ENSG00000039600				182	0	0	197	12	5.74163
DDR1	0	genome.wustl.edu	37	6	30863264	30863264	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	6	30863264	30863264	G	A	SNP	DDR1	ENST00000376575	human	ensembl	74_37	+1	known	missense	c.1597	p.A533T	0.998	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR1	HGNC	ENSG00000204580				230	0	0	242	21	7.98479
C7orf62	0	genome.wustl.edu	37	7	88423659	88423659	+	Silent	SNP	A	A	G			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	7	88423659	88423659	A	G	SNP	C7orf62	ENST00000297203	human	ensembl	74_37	-1	known	silent	c.598	p.L200	0.998	NULL	NULL	-	no_errors	C7orf62	HGNC	ENSG00000164645				91	0	0	100	6	5.66038
ZNF655	0	genome.wustl.edu	37	7	99171017	99171017	+	Missense_Mutation	SNP	T	T	C			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	7	99171017	99171017	T	C	SNP	ZNF655	ENST00000424881	human	ensembl	74_37	+1	known	missense	c.1391	p.M464T	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF655	HGNC	ENSG00000197343				109	0	0	112	6	5.08475
TBC1D13	0	genome.wustl.edu	37	9	131565732	131565732	+	Silent	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	9	131565732	131565732	G	A	SNP	TBC1D13	ENST00000372648	human	ensembl	74_37	+1	known	silent	c.747	p.E249	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D13	HGNC	ENSG00000107021				51	0	0	61	5	7.57576
PLXNA3	0	genome.wustl.edu	37	X	153691738	153691738	+	Missense_Mutation	SNP	G	G	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	X	153691738	153691738	G	A	SNP	PLXNA3	ENST00000369682	human	ensembl	74_37	+1	known	missense	c.1322	p.R441Q	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA3	HGNC	ENSG00000130827				262	1	0.380228	256	18	6.56934
ARSH	0	genome.wustl.edu	37	X	2951149	2951149	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	X	2951149	2951149	C	A	SNP	ARSH	ENST00000381130	human	ensembl	74_37	+1	known	nonsense	c.1412	p.S471*	0.006	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSH	HGNC	ENSG00000205667				73	0	0	75	8	9.63855
KRTAP2-4	0	genome.wustl.edu	37	17	39221759	39221773	+	In_Frame_Del	DEL	GCAGGGGGGCCGGCA	GCAGGGGGGCCGGCA	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	GCAGGGGGGCCGGCA	GCAGGGGGGCCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	17	39221759	39221773	GCAGGGGGGCCGGCA	-	DEL	KRTAP2-4	ENST00000394015	human	ensembl	74_37	-1	known	in_frame_del	c.339_325	p.CRPPC109in_frame_del	1.000:1.000:1.000:1.000:1.000:0.978:0.978:0.995:0.996:0.982:1.000:0.999:1.000:1.000:1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP2-4	HGNC	ENSG00000213417				15	0	0	14	4	22.2222
TP53	0	genome.wustl.edu	37	17	7579394	7579400	+	Frame_Shift_Del	DEL	GGGACAG	GGGACAG	-			TCGA-D7-A74B-01A-12D-A33T-08	TCGA-D7-A74B-10A-01D-A33W-08	GGGACAG	GGGACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	71cf96d3-b837-45d3-8be7-6cbfae3e0e87	a3c16587-466c-4577-9602-b88d228ab4b1	17	7579394	7579400	GGGACAG	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	frame_shift_del	c.293_287	p.S96fs	1.000:1.000:1.000:1.000:0.963:0.304:0.241	pfam_p53_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				106	0	0	100	10	9.09091
