Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LCE2A	0	genome.wustl.edu	37	1	152671655	152671655	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	152671655	152671655	C	A	SNP	LCE2A	ENST00000368779	human	ensembl	74_37	+1	known	missense	c.278	p.S93Y	0.000	NULL	NULL	-	no_errors	LCE2A	HGNC	ENSG00000187173				110	0	0	83	19	18.6275
ADAM15	0	genome.wustl.edu	37	1	155026661	155026661	+	Silent	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	155026661	155026661	T	C	SNP	ADAM15	ENST00000356955	human	ensembl	74_37	+1	known	silent	c.378	p.Y126	0.001	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537				257	0	0	198	72	26.6667
ARHGAP30	0	genome.wustl.edu	37	1	161018090	161018090	+	Missense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	161018090	161018090	G	T	SNP	ARHGAP30	ENST00000368013	human	ensembl	74_37	-1	known	missense	c.2721	p.D907E	0.045	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP30	HGNC	ENSG00000186517				85	0	0	72	62	46.2687
TEX35	0	genome.wustl.edu	37	1	178489948	178489948	+	Missense_Mutation	SNP	T	T	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	178489948	178489948	T	G	SNP	TEX35	ENST00000319416	human	ensembl	74_37	+1	known	missense	c.482	p.M161R	0.000	NULL	NULL	-	no_errors	TEX35	HGNC	ENSG00000240021				86	0	0	66	5	7.04225
LAMC2	0	genome.wustl.edu	37	1	183208626	183208626	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	183208626	183208626	C	T	SNP	LAMC2	ENST00000264144	human	ensembl	74_37	+1	known	silent	c.2997	p.S999	0.805	NULL	pfam_EGF_laminin,pfam_Laminin_B_type_IV,superfamily_Growth_fac_rcpt_N_dom,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin	-	no_errors	LAMC2	HGNC	ENSG00000058085				256	0	0	131	38	22.4852
USH2A	0	genome.wustl.edu	37	1	216262463	216262463	+	Missense_Mutation	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	216262463	216262463	T	C	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.4777	p.T1593A	0.949	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Laminin_G,pfscan_Laminin_G	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781				247	0	0	290	33	10.2167
ZP4	0	genome.wustl.edu	37	1	238053244	238053244	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	238053244	238053244	C	A	SNP	ZP4	ENST00000366570	human	ensembl	74_37	-1	known	missense	c.323	p.G108V	0.006	NULL	pfam_ZP_dom,pfam_P_trefoil,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP4	HGNC	ENSG00000116996				420	0	0	204	287	58.4521
RUNX3	0	genome.wustl.edu	37	1	25229007	25229007	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	25229007	25229007	G	A	SNP	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	missense	c.896	p.S299L	1.000	pirsf_TF_Runt-rel_RUNX	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX3	HGNC	ENSG00000020633				87	0	0	28	25	47.1698
AGO4	0	genome.wustl.edu	37	1	36306902	36306902	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	36306902	36306902	G	A	SNP	AGO4	ENST00000373210	human	ensembl	74_37	+1	known	missense	c.1861	p.V621I	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO4	HGNC	ENSG00000134698				103	0	0	70	5	6.66667
DHCR24	0	genome.wustl.edu	37	1	55349369	55349369	+	Silent	SNP	A	A	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	1	55349369	55349369	A	T	SNP	DHCR24	ENST00000371269	human	ensembl	74_37	-1	known	silent	c.309	p.R103	0.742	superfamily_FAD-bd_2	pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2	-	no_errors	DHCR24	HGNC	ENSG00000116133				309	1	0.322581	132	60	31.25
NEBL	0	genome.wustl.edu	37	10	21101831	21101831	+	Missense_Mutation	SNP	T	T	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	21101831	21101831	T	A	SNP	NEBL	ENST00000377122	human	ensembl	74_37	-1	known	missense	c.2385	p.R795S	0.173	NULL	pfam_Nebulin_35r-motif,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	NEBL	HGNC	ENSG00000078114				131	0	0	89	40	31.0078
ADAMTS14	0	genome.wustl.edu	37	10	72500888	72500888	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	72500888	72500888	C	A	SNP	ADAMTS14	ENST00000373208	human	ensembl	74_37	+1	known	missense	c.1903	p.H635N	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS14	HGNC	ENSG00000138316				57	0	0	35	8	18.6047
SEC24C	0	genome.wustl.edu	37	10	75526139	75526139	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	75526139	75526139	G	A	SNP	SEC24C	ENST00000339365	human	ensembl	74_37	+1	known	missense	c.1639	p.V547I	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986				111	0	0	52	35	40.2299
GATA3	0	genome.wustl.edu	37	10	8100408	8100408	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	8100408	8100408	G	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.382	p.G128R	1.000	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				119	0	0	87	14	13.8614
GATA3	0	genome.wustl.edu	37	10	8100563	8100563	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	8100563	8100563	C	T	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	silent	c.537	p.D179	0.101	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485				77	0	0	55	10	15.3846
ZNF518A	0	genome.wustl.edu	37	10	97918089	97918089	+	RNA	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	10	97918089	97918089	C	A	SNP	ZNF518A	ENST00000316045	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.257	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853				210	0	0	198	37	15.7447
NXPE4	0	genome.wustl.edu	37	11	114441717	114441717	+	Missense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	114441717	114441717	G	T	SNP	NXPE4	ENST00000375478	human	ensembl	74_37	-1	known	missense	c.1578	p.H526Q	1.000	NULL	pfam_NXPH/NXPE,superfamily_Ig_E-set	-	no_errors	NXPE4	HGNC	ENSG00000137634				171	0	0	53	50	48.5437
KCNJ5	0	genome.wustl.edu	37	11	128786552	128786552	+	Missense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	128786552	128786552	G	T	SNP	KCNJ5	ENST00000529694	human	ensembl	74_37	+1	known	missense	c.1186	p.A396S	0.000	pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.4	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.4	-	no_errors	KCNJ5	HGNC	ENSG00000120457				84	0	0	42	15	26.3158
SPON1	0	genome.wustl.edu	37	11	14264896	14264896	+	RNA	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	14264896	14264896	G	A	SNP	SPON1	ENST00000310358	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SPON1	HGNC	ENSG00000152268				17	0	0	3	3	50
MRGPRX4	0	genome.wustl.edu	37	11	18194989	18194989	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	18194989	18194989	C	T	SNP	MRGPRX4	ENST00000314254	human	ensembl	74_37	+1	known	silent	c.186	p.S62	0.003	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX4	HGNC	ENSG00000179817				154	0	0	88	38	30.1587
TSG101	0	genome.wustl.edu	37	11	18505470	18505470	+	Missense_Mutation	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	18505470	18505470	T	C	SNP	TSG101	ENST00000251968	human	ensembl	74_37	-1	known	missense	c.790	p.K264E	1.000	NULL	pfam_UEV_N,pfam_Steadiness_box,superfamily_UBQ-conjugating_enzyme/RWD	-	no_errors	TSG101	HGNC	ENSG00000074319				714	0	0	340	151	30.7536
OR5AP2	0	genome.wustl.edu	37	11	56409733	56409733	+	Silent	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	56409733	56409733	G	T	SNP	OR5AP2	ENST00000544374	human	ensembl	74_37	-1	known	silent	c.186	p.L62	0.844	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AP2	HGNC	ENSG00000172464				127	0	0	37	38	50.6667
KLC2	0	genome.wustl.edu	37	11	66026277	66026277	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	66026277	66026277	G	A	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	missense	c.212	p.G71E	1.000	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996				91	0	0	38	12	24
TAF1D	0	genome.wustl.edu	37	11	93469428	93469428	+	Missense_Mutation	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	11	93469428	93469428	T	C	SNP	TAF1D	ENST00000323981	human	ensembl	74_37	-1	known	missense	c.736	p.S246G	0.002	NULL	NULL	-	no_errors	TAF1D	HGNC	ENSG00000166012				144	0	0	81	40	33.0579
HIP1R	0	genome.wustl.edu	37	12	123342783	123342783	+	Silent	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	12	123342783	123342783	T	C	SNP	HIP1R	ENST00000253083	human	ensembl	74_37	+1	known	silent	c.1950	p.C650	1.000	NULL	pfam_ANTH_dom,pfam_ILWEQ_dom,pfam_Epsin_dom_N,superfamily_ENTH_VHS,smart_Epsin-like_N,smart_ILWEQ_dom,pfscan_Epsin-like_N,pfscan_ILWEQ_dom	-	no_errors	HIP1R	HGNC	ENSG00000130787				36	0	0	18	12	40
ABCC9	0	genome.wustl.edu	37	12	22012551	22012551	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	12	22012551	22012551	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	74_37	-1	known	missense	c.2474	p.A825V	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2	-	no_errors	ABCC9	HGNC	ENSG00000069431				349	0	0	328	940	74.1325
KRT8	0	genome.wustl.edu	37	12	53291239	53291239	+	Silent	SNP	A	A	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	12	53291239	53291239	A	G	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	silent	c.1425	p.S475	0.057	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				90	0	0	68	8	10.5263
KRT8	0	genome.wustl.edu	37	12	53291266	53291266	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	12	53291266	53291266	G	A	SNP	KRT8	ENST00000293308	human	ensembl	74_37	-1	known	silent	c.1398	p.I466	0.859	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421				97	0	0	72	12	14.2857
LIG4	0	genome.wustl.edu	37	13	108861879	108861879	+	Missense_Mutation	SNP	G	G	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	13	108861879	108861879	G	C	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.1738	p.R580G	1.000	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405				137	0	0	131	28	17.6101
PAN3	0	genome.wustl.edu	37	13	28830630	28830630	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	13	28830630	28830630	C	T	SNP	PAN3	ENST00000380958	human	ensembl	74_37	+1	known	missense	c.1202	p.T401M	1.000	NULL	superfamily_Kinase-like_dom,smart_Znf_CCCH,pfscan_Prot_kinase_dom	-	no_errors	PAN3	HGNC	ENSG00000152520				208	0	0	123	79	39.1089
LGMN	0	genome.wustl.edu	37	14	93178266	93178266	+	Silent	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	14	93178266	93178266	C	A	SNP	LGMN	ENST00000334869	human	ensembl	74_37	-1	known	silent	c.645	p.S215	0.007	pfam_Peptidase_C13	pfam_Peptidase_C13,prints_Peptidase_C13	-	no_errors	LGMN	HGNC	ENSG00000100600				181	0	0	132	21	13.7255
ITPK1	0	genome.wustl.edu	37	14	93483134	93483134	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	14	93483134	93483134	G	A	SNP	ITPK1	ENST00000267615	human	ensembl	74_37	-1	known	missense	c.133	p.R45W	1.000	pfam_Inositol_tetrakis-P_1-kinase	pfam_Inositol_tetrakis-P_1-kinase	-	no_errors	ITPK1	HGNC	ENSG00000100605				117	0	0	70	14	16.6667
IL16	0	genome.wustl.edu	37	15	81565490	81565490	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	15	81565490	81565490	C	T	SNP	IL16	ENST00000302987	human	ensembl	74_37	+1	known	silent	c.735	p.Y245	0.985	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349				85	0	0	71	6	7.79221
SLC12A4	0	genome.wustl.edu	37	16	67984928	67984928	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	16	67984928	67984928	G	A	SNP	SLC12A4	ENST00000422611	human	ensembl	74_37	-1	known	missense	c.1339	p.R447C	0.341	pfam_AA-permease/SLC12A_dom,tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,prints_K/Cl_cotranspt1,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A4	HGNC	ENSG00000124067				114	0	0	62	11	15.0685
ADAT1	0	genome.wustl.edu	37	16	75642762	75642762	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	16	75642762	75642762	G	A	SNP	ADAT1	ENST00000307921	human	ensembl	74_37	-1	known	nonsense	c.1168	p.R390*	0.656	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	-	no_errors	ADAT1	HGNC	ENSG00000065457				123	0	0	60	12	16.6667
GRIN2A	0	genome.wustl.edu	37	16	9857896	9857896	+	Silent	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	16	9857896	9857896	G	T	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	silent	c.3505	p.R1169	1.000	pfam_NMDAR2_C	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454				385	1	0.259067	168	175	51.0204
MYH3	0	genome.wustl.edu	37	17	10538727	10538727	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	17	10538727	10538727	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.4129	p.E1377K	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063				265	0	0	168	101	37.5465
FAM222B	0	genome.wustl.edu	37	17	27085667	27085667	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	17	27085667	27085667	C	T	SNP	FAM222B	ENST00000341217	human	ensembl	74_37	-1	known	missense	c.1310	p.G437D	1.000	NULL	NULL	-	no_errors	FAM222B	HGNC	ENSG00000173065				42	0	0	34	2	5.55556
CHD3	0	genome.wustl.edu	37	17	7796749	7796749	+	Missense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	17	7796749	7796749	G	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	missense	c.655	p.A219S	1.000	superfamily_HMG_box_dom	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004				26	0	0	21	5	19.2308
C17orf70	0	genome.wustl.edu	37	17	79517825	79517825	+	Missense_Mutation	SNP	T	T	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	17	79517825	79517825	T	G	SNP	C17orf70	ENST00000327787	human	ensembl	74_37	-1	known	missense	c.695	p.D232A	0.943	NULL	NULL	-	no_errors	C17orf70	HGNC	ENSG00000185504				59	0	0	29	6	17.1429
DCC	0	genome.wustl.edu	37	18	50589747	50589747	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	18	50589747	50589747	C	A	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1058	p.T353K	0.591	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323				522	1	0.191205	153	197	56.2857
CETN1	0	genome.wustl.edu	37	18	580882	580882	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	18	580882	580882	C	T	SNP	CETN1	ENST00000327228	human	ensembl	74_37	+1	known	silent	c.474	p.N158	1.000	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CETN1	HGNC	ENSG00000177143				101	0	0	35	12	25.5319
ICAM4	0	genome.wustl.edu	37	19	10398284	10398284	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	19	10398284	10398284	C	T	SNP	ICAM4	ENST00000380770	human	ensembl	74_37	+1	known	missense	c.467	p.T156M	0.768	prints_ICAM_VCAM_N	pfam_ICAM_N,prints_ICAM_VCAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371				98	0	0	49	12	19.6721
ZNF676	0	genome.wustl.edu	37	19	22364289	22364289	+	Missense_Mutation	SNP	T	T	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	19	22364289	22364289	T	A	SNP	ZNF676	ENST00000397121	human	ensembl	74_37	-1	known	missense	c.230	p.E77V	0.009	NULL	pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF676	HGNC	ENSG00000196109				210	0	0	117	36	23.5294
C3	0	genome.wustl.edu	37	19	6707247	6707247	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	19	6707247	6707247	C	A	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2085	p.E695D	0.333	pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730				28	0	0	13	7	35
XIRP2	0	genome.wustl.edu	37	2	168100923	168100923	+	Missense_Mutation	SNP	A	A	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	2	168100923	168100923	A	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3021	p.E1007D	0.999	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092				161	0	0	71	26	26.8041
TTLL4	0	genome.wustl.edu	37	2	219610881	219610881	+	Missense_Mutation	SNP	A	A	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	2	219610881	219610881	A	G	SNP	TTLL4	ENST00000258398	human	ensembl	74_37	+1	known	missense	c.1901	p.N634S	1.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL4	HGNC	ENSG00000135912				345	0	0	141	80	36.1991
C2orf78	0	genome.wustl.edu	37	2	74042660	74042660	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	2	74042660	74042660	C	T	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	missense	c.1310	p.S437F	0.002	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833				103	0	0	82	23	21.9048
L3MBTL1	0	genome.wustl.edu	37	20	42168807	42168807	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	42168807	42168807	C	T	SNP	L3MBTL1	ENST00000418998	human	ensembl	74_37	+1	known	silent	c.2124	p.V708	0.004	NULL	pfam_Mbt,pfam_Znf_C2HC,superfamily_SAM/pointed,smart_Mbt,pfscan_Mbt	-	no_errors	L3MBTL1	HGNC	ENSG00000185513				81	0	0	52	10	16.129
TSHZ2	0	genome.wustl.edu	37	20	51871800	51871800	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51871800	51871800	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.1803	p.K601	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				227	0	0	2918	619	17.5007
TSHZ2	0	genome.wustl.edu	37	20	51871810	51871810	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51871810	51871810	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.1813	p.E605K	0.167	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				208	0	0	2853	586	17.0398
TSHZ2	0	genome.wustl.edu	37	20	51871813	51871813	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51871813	51871813	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.1816	p.D606N	0.999	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				207	0	0	2830	554	16.3712
TSHZ2	0	genome.wustl.edu	37	20	51871968	51871968	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51871968	51871968	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.1971	p.L657	0.371	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				110	0	0	1360	318	18.9511
TSHZ2	0	genome.wustl.edu	37	20	51872223	51872223	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872223	51872223	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.2226	p.L742	0.944	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				114	0	0	1422	361	20.2468
TSHZ2	0	genome.wustl.edu	37	20	51872454	51872454	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872454	51872454	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2457	p.M819I	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				167	0	0	2186	440	16.7555
TSHZ2	0	genome.wustl.edu	37	20	51872466	51872466	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872466	51872466	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2469	p.M823I	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				172	0	0	2180	424	16.2826
TSHZ2	0	genome.wustl.edu	37	20	51872467	51872467	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872467	51872467	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2470	p.D824N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				171	0	0	2175	423	16.2818
TSHZ2	0	genome.wustl.edu	37	20	51872482	51872482	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872482	51872482	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2485	p.E829K	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				168	0	0	2133	435	16.9393
TSHZ2	0	genome.wustl.edu	37	20	51872676	51872676	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872676	51872676	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2679	p.M893I	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				134	0	0	1865	381	16.9635
TSHZ2	0	genome.wustl.edu	37	20	51872755	51872755	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872755	51872755	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2758	p.D920N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				127	0	0	1700	322	15.9248
TSHZ2	0	genome.wustl.edu	37	20	51872804	51872804	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872804	51872804	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2807	p.R936K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				125	0	0	1665	289	14.7902
TSHZ2	0	genome.wustl.edu	37	20	51872833	51872833	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872833	51872833	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2836	p.E946K	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				131	0	0	1543	238	13.3633
TSHZ2	0	genome.wustl.edu	37	20	51872856	51872856	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872856	51872856	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2859	p.M953I	1.000	pfscan_Znf_C2H2	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				131	0	0	1547	218	12.3513
TSHZ2	0	genome.wustl.edu	37	20	51872865	51872865	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872865	51872865	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2868	p.M956I	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				123	0	0	1485	200	11.8694
TSHZ2	0	genome.wustl.edu	37	20	51872905	51872905	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872905	51872905	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2908	p.E970K	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				101	0	0	1282	142	9.97191
TSHZ2	0	genome.wustl.edu	37	20	51872907	51872907	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872907	51872907	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.2910	p.E970	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				99	0	0	1259	142	10.1356
TSHZ2	0	genome.wustl.edu	37	20	51872931	51872931	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872931	51872931	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.2934	p.Q978	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				86	0	0	1166	105	8.26121
TSHZ2	0	genome.wustl.edu	37	20	51872968	51872968	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	20	51872968	51872968	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	missense	c.2971	p.D991N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463				110	0	0	1477	84	5.38117
COL6A6	0	genome.wustl.edu	37	3	130282057	130282057	+	Missense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	3	130282057	130282057	G	T	SNP	COL6A6	ENST00000358511	human	ensembl	74_37	+1	known	missense	c.210	p.Q70H	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A6	HGNC	ENSG00000206384				168	1	0.591716	90	35	28
MED12L	0	genome.wustl.edu	37	3	150877763	150877763	+	Missense_Mutation	SNP	A	A	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	3	150877763	150877763	A	T	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.982	p.S328C	0.553	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893				215	0	0	135	29	17.6829
CCR1	0	genome.wustl.edu	37	3	46245463	46245463	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	3	46245463	46245463	G	T	SNP	CCR1	ENST00000296140	human	ensembl	74_37	-1	known	nonsense	c.342	p.Y114*	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823				196	0	0	83	28	25.2252
LHFPL4	0	genome.wustl.edu	37	3	9547696	9547696	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	3	9547696	9547696	G	A	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	missense	c.598	p.R200W	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959				182	0	0	64	43	40.1869
ZFP42	0	genome.wustl.edu	37	4	188923983	188923983	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	4	188923983	188923983	C	T	SNP	ZFP42	ENST00000326866	human	ensembl	74_37	+1	known	missense	c.22	p.R8W	0.003	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFP42	HGNC	ENSG00000179059				133	0	0	63	25	28.4091
PTPN13	0	genome.wustl.edu	37	4	87610306	87610306	+	Missense_Mutation	SNP	A	A	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	4	87610306	87610306	A	G	SNP	PTPN13	ENST00000436978	human	ensembl	74_37	+1	known	missense	c.509	p.K170R	1.000	pirsf_Tyr_Pase_non-rcpt_typ-13,smart_KIND	pirsf_Tyr_Pase_non-rcpt_typ-13,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_PDZ,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,superfamily_PAZ_dom,smart_KIND,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN13	HGNC	ENSG00000163629				279	0	0	112	35	23.8095
TSLP	0	genome.wustl.edu	37	5	110407621	110407621	+	Splice_Site	SNP	A	A	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	5	110407621	110407621	A	T	SNP	TSLP	ENST00000420978	human	ensembl	74_37	+1	putative	splice_site	c.35-2	e2-2	0.985	-	-	-	no_errors	TSLP	HGNC	ENSG00000145777				304	0	0	116	82	41.4141
RNF145	0	genome.wustl.edu	37	5	158585955	158585955	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	5	158585955	158585955	G	A	SNP	RNF145	ENST00000518802	human	ensembl	74_37	-1	known	missense	c.1805	p.P602L	1.000	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF145	HGNC	ENSG00000145860				116	0	0	82	30	26.7857
ZNF354C	0	genome.wustl.edu	37	5	178506747	178506747	+	Missense_Mutation	SNP	A	A	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	5	178506747	178506747	A	C	SNP	ZNF354C	ENST00000315475	human	ensembl	74_37	+1	known	missense	c.1314	p.K438N	0.971	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF354C	HGNC	ENSG00000177932				203	0	0	142	37	20.6704
FAM81B	0	genome.wustl.edu	37	5	94749724	94749724	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	5	94749724	94749724	C	T	SNP	FAM81B	ENST00000283357	human	ensembl	74_37	+1	known	missense	c.367	p.R123C	1.000	NULL	NULL	-	no_errors	FAM81B	HGNC	ENSG00000153347				163	1	0.609756	106	47	30.719
HIST1H2AG	0	genome.wustl.edu	37	6	27101031	27101031	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	27101031	27101031	G	A	SNP	HIST1H2AG	ENST00000359193	human	ensembl	74_37	+1	known	missense	c.181	p.A61T	1.000	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2A,prints_Histone_H2A	-	no_errors	HIST1H2AG	HGNC	ENSG00000196787				79	0	0	56	14	20
TNF	0	genome.wustl.edu	37	6	31545010	31545010	+	Missense_Mutation	SNP	T	T	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	31545010	31545010	T	G	SNP	TNF	ENST00000449264	human	ensembl	74_37	+1	known	missense	c.398	p.L133R	1.000	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pfscan_TNF_dom,prints_TNF_alpha,prints_TNF	-	no_errors	TNF	HGNC	ENSG00000232810				187	0	0	109	28	20.438
SLC26A8	0	genome.wustl.edu	37	6	35919039	35919039	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	35919039	35919039	G	A	SNP	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	silent	c.2373	p.A791	0.679	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053				179	0	0	68	67	49.6296
SLC26A8	0	genome.wustl.edu	37	6	35987480	35987480	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	35987480	35987480	G	A	SNP	SLC26A8	ENST00000355574	human	ensembl	74_37	-1	known	missense	c.5	p.A2V	0.221	NULL	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom	-	no_errors	SLC26A8	HGNC	ENSG00000112053				57	0	0	34	15	30.6122
DEFB112	0	genome.wustl.edu	37	6	50016324	50016324	+	Missense_Mutation	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	50016324	50016324	T	C	SNP	DEFB112	ENST00000322246	human	ensembl	74_37	-1	known	missense	c.41	p.K14R	0.000	NULL	NULL	-	no_errors	DEFB112	HGNC	ENSG00000180872				190	0	0	85	25	22.7273
USP45	0	genome.wustl.edu	37	6	99894207	99894207	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	6	99894207	99894207	G	A	SNP	USP45	ENST00000327681	human	ensembl	74_37	-1	known	missense	c.1441	p.R481C	0.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,superfamily_Znf_FYVE_PHD,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP45	HGNC	ENSG00000123552				161	0	0	102	22	17.7419
AIMP2	0	genome.wustl.edu	37	7	6063309	6063309	+	Missense_Mutation	SNP	A	A	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	7	6063309	6063309	A	C	SNP	AIMP2	ENST00000223029	human	ensembl	74_37	+1	known	missense	c.950	p.K317T	0.008	superfamily_Glutathione-S-Trfase_C-like	superfamily_Glutathione-S-Trfase_C-like	-	no_errors	AIMP2	HGNC	ENSG00000106305				114	0	0	72	12	14.2857
PTPN12	0	genome.wustl.edu	37	7	77256920	77256920	+	Missense_Mutation	SNP	A	A	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	7	77256920	77256920	A	G	SNP	PTPN12	ENST00000248594	human	ensembl	74_37	+1	known	missense	c.1924	p.T642A	1.000	pirsf_Ptpn_12	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Ptpn_12,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN12	HGNC	ENSG00000127947				160	1	0.621118	91	22	19.469
RGS20	0	genome.wustl.edu	37	8	54791954	54791954	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	8	54791954	54791954	G	A	SNP	RGS20	ENST00000297313	human	ensembl	74_37	+1	known	missense	c.302	p.R101H	0.015	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS20	HGNC	ENSG00000147509				63	0	0	54	25	31.6456
XKR4	0	genome.wustl.edu	37	8	56015093	56015093	+	Silent	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	8	56015093	56015093	C	T	SNP	XKR4	ENST00000327381	human	ensembl	74_37	+1	known	silent	c.45	p.S15	1.000	NULL	pfam_Transport_prot_XK	-	no_errors	XKR4	HGNC	ENSG00000206579				42	0	0	19	12	38.7097
VCPIP1	0	genome.wustl.edu	37	8	67577533	67577533	+	Missense_Mutation	SNP	G	G	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	8	67577533	67577533	G	C	SNP	VCPIP1	ENST00000310421	human	ensembl	74_37	-1	known	missense	c.1661	p.S554C	1.000	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073				508	0	0	528	84	13.7255
ERMP1	0	genome.wustl.edu	37	9	5805111	5805111	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	9	5805111	5805111	G	A	SNP	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	silent	c.1830	p.L610	0.938	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				102	0	0	65	11	14.4737
ROR2	0	genome.wustl.edu	37	9	94519612	94519612	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	9	94519612	94519612	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	silent	c.405	p.C135	0.987	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071				103	0	0	72	24	25
HNRNPH2	0	genome.wustl.edu	37	X	100667850	100667850	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	100667850	100667850	C	A	SNP	HNRNPH2	ENST00000316594	human	ensembl	74_37	+1	known	missense	c.874	p.H292N	1.000	smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_Znf_CHHC,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPH2	HGNC	ENSG00000126945				235	0	0	155	26	14.3646
IL13RA2	0	genome.wustl.edu	37	X	114239785	114239785	+	Missense_Mutation	SNP	C	C	T			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	114239785	114239785	C	T	SNP	IL13RA2	ENST00000243213	human	ensembl	74_37	-1	known	missense	c.1091	p.R364H	0.000	NULL	pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3	-	no_errors	IL13RA2	HGNC	ENSG00000123496				239	1	0.416667	121	21	14.7887
DCAF12L1	0	genome.wustl.edu	37	X	125685810	125685810	+	Missense_Mutation	SNP	C	C	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	125685810	125685810	C	A	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	missense	c.782	p.S261I	0.015	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889				94	0	0	37	42	53.1646
CD40LG	0	genome.wustl.edu	37	X	135736558	135736558	+	Silent	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	135736558	135736558	G	A	SNP	CD40LG	ENST00000370629	human	ensembl	74_37	+1	known	silent	c.315	p.T105	0.701	pirsf_TNF_ligand_5	pfam_TNF_dom,superfamily_Tumour_necrosis_fac-like_dom,smart_TNF_dom,pirsf_TNF_ligand_5,pfscan_TNF_dom,prints_TNF_ligand_5	-	no_errors	CD40LG	HGNC	ENSG00000102245				187	0	0	129	23	15.1316
MAP7D2	0	genome.wustl.edu	37	X	20081624	20081624	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	20081624	20081624	G	A	SNP	MAP7D2	ENST00000379643	human	ensembl	74_37	-1	known	nonsense	c.280	p.R94*	1.000	NULL	pfam_MAP7	-	no_errors	MAP7D2	HGNC	ENSG00000184368				246	1	0.404858	72	99	57.8947
CHST7	0	genome.wustl.edu	37	X	46433894	46433894	+	Missense_Mutation	SNP	C	C	G			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	46433894	46433894	C	G	SNP	CHST7	ENST00000276055	human	ensembl	74_37	+1	known	missense	c.528	p.D176E	0.735	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST7	HGNC	ENSG00000147119				49	0	0	14	4	22.2222
ZC4H2	0	genome.wustl.edu	37	X	64137662	64137662	+	Silent	SNP	T	T	C			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	64137662	64137662	T	C	SNP	ZC4H2	ENST00000447788	human	ensembl	74_37	-1	known	silent	c.513	p.K171	1.000	NULL	pfam_Znf-C4H2	-	no_errors	ZC4H2	HGNC	ENSG00000126970				67	0	0	44	8	15.3846
TEX11	0	genome.wustl.edu	37	X	69772062	69772062	+	Missense_Mutation	SNP	G	G	A			TCGA-EQ-5647-01A-01D-1600-08	TCGA-EQ-5647-10A-01D-1600-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	feccee20-a62d-4152-b832-b9fdaca87a61	96da0697-64a5-4ec6-89be-40dbaafc65bc	X	69772062	69772062	G	A	SNP	TEX11	ENST00000344304	human	ensembl	74_37	-1	known	missense	c.2479	p.P827S	0.985	NULL	pfam_Meiosis_specific_SPO22,smart_TPR_repeat	-	no_errors	TEX11	HGNC	ENSG00000120498				133	0	0	66	27	29.0323
