Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CSDE1	0	genome.wustl.edu	37	1	115266562	115266562	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	115266562	115266562	C	T	SNP	CSDE1	ENST00000369530	human	ensembl	74_37	-1	known	silent	c.1860	p.L620	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold,smart_Cold_shock_prot	-	no_errors	CSDE1	HGNC	ENSG00000009307				194	0	0	145	11	7.05128
SYCP1	0	genome.wustl.edu	37	1	115453042	115453042	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	115453042	115453042	G	A	SNP	SYCP1	ENST00000369518	human	ensembl	74_37	+1	known	missense	c.1345	p.E449K	1.000	pfam_SCP-1	pfam_SCP-1	-	no_errors	SYCP1	HGNC	ENSG00000198765				50	0	0	40	3	6.97674
FLG	0	genome.wustl.edu	37	1	152286012	152286012	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	152286012	152286012	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.1350	p.H450Q	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631				247	0	0	290	29	9.09091
HMCN1	0	genome.wustl.edu	37	1	186158760	186158760	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	186158760	186158760	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.16658	p.R5553Q	1.000	superfamily_Cadherin-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341				36	0	0	35	18	33.9623
DISC1	0	genome.wustl.edu	37	1	232162197	232162197	+	Missense_Mutation	SNP	C	C	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	232162197	232162197	C	A	SNP	DISC1	ENST00000439617	human	ensembl	74_37	+1	known	missense	c.2324	p.S775Y	0.984	NULL	superfamily_Prefoldin	-	no_errors	DISC1	HGNC	ENSG00000162946				13	0	0	27	2	6.89655
ABCA4	0	genome.wustl.edu	37	1	94546153	94546153	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	94546153	94546153	G	A	SNP	ABCA4	ENST00000370225	human	ensembl	74_37	-1	known	missense	c.980	p.P327L	1.000	tigrfam_Rim_ABC_transpt	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_Rim_ABC_transpt	-	no_errors	ABCA4	HGNC	ENSG00000198691				102	0	0	60	37	38.1443
LBX1	0	genome.wustl.edu	37	10	102987212	102987212	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	102987212	102987212	C	T	SNP	LBX1	ENST00000370193	human	ensembl	74_37	-1	known	missense	c.661	p.G221S	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	LBX1	HGNC	ENSG00000138136				16	0	0	4	3	42.8571
NFKB2	0	genome.wustl.edu	37	10	104160423	104160423	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	104160423	104160423	G	T	SNP	NFKB2	ENST00000369966	human	ensembl	74_37	+1	known	missense	c.1810	p.V604L	0.666	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB2	HGNC	ENSG00000077150				38	0	0	29	2	6.45161
C10orf82	0	genome.wustl.edu	37	10	118424407	118424407	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	118424407	118424407	G	T	SNP	C10orf82	ENST00000588184	human	ensembl	74_37	-1	known	missense	c.326	p.A109E	0.589	NULL	NULL	-	no_errors	C10orf82	HGNC	ENSG00000165863				122	0	0	64	50	43.8596
C10orf120	0	genome.wustl.edu	37	10	124457429	124457429	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	124457429	124457429	G	A	SNP	C10orf120	ENST00000329446	human	ensembl	74_37	-1	known	silent	c.828	p.I276	0.058	NULL	NULL	-	no_errors	C10orf120	HGNC	ENSG00000183559				90	0	0	54	51	48.5714
DCLRE1C	0	genome.wustl.edu	37	10	14976747	14976747	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	14976747	14976747	C	T	SNP	DCLRE1C	ENST00000378278	human	ensembl	74_37	-1	known	silent	c.492	p.L164	0.999	NULL	pfam_DRMBL	-	no_errors	DCLRE1C	HGNC	ENSG00000152457				133	0	0	106	39	26.8966
FAM21A	0	genome.wustl.edu	37	10	51827887	51827887	+	Missense_Mutation	SNP	A	A	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	51827887	51827887	A	G	SNP	FAM21A	ENST00000282633	human	ensembl	74_37	+1	known	missense	c.26	p.Q9R	0.386	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290				22	0	0	23	10	30.303
ASAH2	0	genome.wustl.edu	37	10	52003054	52003054	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	52003054	52003054	G	A	SNP	ASAH2	ENST00000395526	human	ensembl	74_37	-1	known	missense	c.418	p.R140C	1.000	pfam_Ceramidase_alk	pfam_Ceramidase_alk	-	no_errors	ASAH2	HGNC	ENSG00000188611				153	1	0.649351	116	52	30.9524
ANK3	0	genome.wustl.edu	37	10	61932869	61932869	+	Missense_Mutation	SNP	C	C	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	61932869	61932869	C	G	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.2260	p.A754P	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150				46	0	0	229	23	9.12698
PTEN	0	genome.wustl.edu	37	10	89653785	89653785	+	Missense_Mutation	SNP	T	T	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	89653785	89653785	T	G	SNP	PTEN	ENST00000371953	human	ensembl	74_37	+1	known	missense	c.83	p.I28S	1.000	smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Phosphatase_tensin-typ	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,smart_Tyr_Pase_cat,pirsf_Bifunc_PIno_P3_Pase/Pase_PTEN,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	PTEN	HGNC	ENSG00000171862				60	0	0	39	4	9.30233
IFIT1	0	genome.wustl.edu	37	10	91162119	91162119	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	10	91162119	91162119	C	T	SNP	IFIT1	ENST00000371804	human	ensembl	74_37	+1	known	silent	c.87	p.D29	0.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT1	HGNC	ENSG00000185745				114	0	0	44	29	39.726
HTR3A	0	genome.wustl.edu	37	11	113853876	113853876	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	113853876	113853876	G	A	SNP	HTR3A	ENST00000355556	human	ensembl	74_37	+1	known	missense	c.427	p.V143M	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_5HT3_rcpt_A,prints_5HT3_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_A,prints_5HT3_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	HTR3A	HGNC	ENSG00000166736				112	0	0	56	44	44
SLC17A6	0	genome.wustl.edu	37	11	22363309	22363309	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	22363309	22363309	G	A	SNP	SLC17A6	ENST00000263160	human	ensembl	74_37	+1	known	missense	c.322	p.G108S	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC17A6	HGNC	ENSG00000091664				74	0	0	21	32	60.3774
GANAB	0	genome.wustl.edu	37	11	62394519	62394519	+	Splice_Site	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	62394519	62394519	C	T	SNP	GANAB	ENST00000346178	human	ensembl	74_37	-1	known	splice_site	c.2388+1	e20+1	1.000	-	-	-	no_errors	GANAB	HGNC	ENSG00000089597				115	0	0	64	8	11.1111
CLEC9A	0	genome.wustl.edu	37	12	10215774	10215774	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	12	10215774	10215774	C	T	SNP	CLEC9A	ENST00000355819	human	ensembl	74_37	+1	putative	missense	c.440	p.T147M	0.001	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC9A	HGNC	ENSG00000197992				63	0	0	61	23	27.381
ERBB3	0	genome.wustl.edu	37	12	56495354	56495354	+	Missense_Mutation	SNP	C	C	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	12	56495354	56495354	C	G	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.3544	p.L1182V	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361				52	0	0	23	17	42.5
LATS2	0	genome.wustl.edu	37	13	21555776	21555776	+	Missense_Mutation	SNP	T	T	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	13	21555776	21555776	T	C	SNP	LATS2	ENST00000382592	human	ensembl	74_37	-1	known	missense	c.2494	p.R832G	0.673	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	LATS2	HGNC	ENSG00000150457				27	0	0	26	9	25.7143
GPALPP1	0	genome.wustl.edu	37	13	45578502	45578502	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	13	45578502	45578502	G	A	SNP	GPALPP1	ENST00000361121	human	ensembl	74_37	+1	known	missense	c.151	p.E51K	0.764	NULL	pfam_DUF3752	-	no_errors	GPALPP1	HGNC	ENSG00000133114				86	0	0	94	6	6
TM2D3	0	genome.wustl.edu	37	15	102182797	102182797	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	15	102182797	102182797	C	T	SNP	TM2D3	ENST00000333202	human	ensembl	74_37	-1	known	missense	c.629	p.R210Q	1.000	pfam_TM2	pfam_TM2	-	no_errors	TM2D3	HGNC	ENSG00000184277				47	0	0	24	2	7.69231
CDAN1	0	genome.wustl.edu	37	15	43021535	43021535	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	15	43021535	43021535	C	T	SNP	CDAN1	ENST00000356231	human	ensembl	74_37	-1	known	silent	c.2433	p.S811	0.053	NULL	NULL	-	no_errors	CDAN1	HGNC	ENSG00000140326				95	0	0	43	27	38.5714
TCF12	0	genome.wustl.edu	37	15	57511694	57511694	+	RNA	SNP	C	C	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	15	57511694	57511694	C	A	SNP	TCF12	ENST00000560764	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.917	-	-	-	no_errors	TCF12	HGNC	ENSG00000140262				18	0	0	11	7	38.8889
ANPEP	0	genome.wustl.edu	37	15	90347484	90347484	+	Missense_Mutation	SNP	C	C	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	15	90347484	90347484	C	A	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.1179	p.Q393H	1.000	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825				145	0	0	100	12	10.7143
EEF2K	0	genome.wustl.edu	37	16	22268610	22268610	+	Nonsense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	16	22268610	22268610	C	T	SNP	EEF2K	ENST00000263026	human	ensembl	74_37	+1	known	nonsense	c.805	p.Q269*	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,pfam_Sel1-like,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pirsf_Elongation_factor_2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	EEF2K	HGNC	ENSG00000103319				83	0	0	98	6	5.76923
E4F1	0	genome.wustl.edu	37	16	2283951	2283951	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	16	2283951	2283951	G	A	SNP	E4F1	ENST00000301727	human	ensembl	74_37	+1	known	silent	c.1335	p.P445	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	E4F1	HGNC	ENSG00000167967				13	0	0	19	2	9.52381
ENSG00000259966	0	genome.wustl.edu	37	16	32621756	32621756	+	RNA	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	16	32621756	32621756	G	T	SNP	ENSG00000259966	ENST00000566952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-652G5.1	Clone_based_vega_gene	ENSG00000259966				119	0	0	122	25	17.0068
AKAP10	0	genome.wustl.edu	37	17	19844304	19844304	+	Silent	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	17	19844304	19844304	G	T	SNP	AKAP10	ENST00000225737	human	ensembl	74_37	-1	known	silent	c.1081	p.R361	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	AKAP10	HGNC	ENSG00000108599				50	0	0	44	3	6.38298
KPNB1	0	genome.wustl.edu	37	17	45757454	45757454	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	17	45757454	45757454	G	A	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.2422	p.E808K	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424				163	0	0	83	64	43.5374
WSCD1	0	genome.wustl.edu	37	17	6021341	6021341	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	17	6021341	6021341	G	A	SNP	WSCD1	ENST00000317744	human	ensembl	74_37	+1	known	missense	c.1208	p.R403Q	1.000	superfamily_P-loop_NTPase	pfam_WSC_carb-bd,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD1	HGNC	ENSG00000179314				74	0	0	57	12	17.3913
TP53	0	genome.wustl.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	17	7578413	7578413	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.517	p.V173M	0.996	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510				74	0	0	19	17	47.2222
NDEL1	0	genome.wustl.edu	37	17	8349043	8349043	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	17	8349043	8349043	G	A	SNP	NDEL1	ENST00000299734	human	ensembl	74_37	+1	known	missense	c.101	p.R34Q	1.000	NULL	pfam_NUDE_C	-	no_errors	NDEL1	HGNC	ENSG00000166579				56	0	0	19	17	47.2222
DSG3	0	genome.wustl.edu	37	18	29055712	29055712	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	18	29055712	29055712	C	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	missense	c.2489	p.S830F	1.000	pfam_Cadherin_cytoplasmic-dom,prints_Desmoglein,prints_Desmosomal_cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Desmoglein,prints_Desmosomal_cadherin	-	no_errors	DSG3	HGNC	ENSG00000134757				53	0	0	26	2	7.14286
DSEL	0	genome.wustl.edu	37	18	65180427	65180427	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	18	65180427	65180427	G	T	SNP	DSEL	ENST00000310045	human	ensembl	74_37	-1	known	missense	c.1449	p.N483K	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451				73	0	0	65	6	8.4507
PRKCSH	0	genome.wustl.edu	37	19	11556203	11556203	+	Splice_Site	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	11556203	11556203	G	A	SNP	PRKCSH	ENST00000252455	human	ensembl	74_37	+1	known	splice_site	c.599-1	e7-1	1.000	-	-	-	no_errors	PRKCSH	HGNC	ENSG00000130175				40	0	0	52	4	7.14286
AKAP8L	0	genome.wustl.edu	37	19	15512388	15512388	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	15512388	15512388	G	A	SNP	AKAP8L	ENST00000397410	human	ensembl	74_37	-1	known	missense	c.389	p.S130L	0.992	NULL	pfam_AKAP95	-	no_errors	AKAP8L	HGNC	ENSG00000011243				15	0	0	13	2	13.3333
CPAMD8	0	genome.wustl.edu	37	19	17122279	17122279	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	17122279	17122279	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.622	p.E208K	0.955	pfam_A2M_N	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111				80	0	0	71	4	5.33333
KIRREL2	0	genome.wustl.edu	37	19	36349318	36349318	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	36349318	36349318	C	T	SNP	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	missense	c.220	p.R74W	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				71	0	0	41	58	58.5859
KIRREL2	0	genome.wustl.edu	37	19	36351836	36351836	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	36351836	36351836	G	A	SNP	KIRREL2	ENST00000360202	human	ensembl	74_37	+1	known	silent	c.954	p.P318	0.001	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	KIRREL2	HGNC	ENSG00000126259				25	0	0	36	2	5.26316
APLP1	0	genome.wustl.edu	37	19	36370317	36370317	+	Missense_Mutation	SNP	T	T	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	36370317	36370317	T	C	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1930	p.Y644H	1.000	pfam_APP_amyloid_C,prints_Amyloid_glyco	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290				103	0	0	108	8	6.89655
SLC6A16	0	genome.wustl.edu	37	19	49797748	49797748	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	49797748	49797748	G	A	SNP	SLC6A16	ENST00000335875	human	ensembl	74_37	-1	known	missense	c.1292	p.P431L	0.761	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	-	no_errors	SLC6A16	HGNC	ENSG00000063127				87	0	0	123	15	10.8696
ZNF525	0	genome.wustl.edu	37	19	53887191	53887191	+	RNA	SNP	T	T	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	53887191	53887191	T	A	SNP	ZNF525	ENST00000601790	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF525	HGNC	ENSG00000203326				16	0	0	20	2	9.09091
MUC16	0	genome.wustl.edu	37	19	9018164	9018164	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	19	9018164	9018164	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.37774	p.L12592	0.000	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143				191	0	0	122	8	6.15385
AFF3	0	genome.wustl.edu	37	2	100181979	100181979	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	2	100181979	100181979	G	A	SNP	AFF3	ENST00000356421	human	ensembl	74_37	-1	known	missense	c.3164	p.T1055M	0.998	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF3	HGNC	ENSG00000144218				112	0	0	122	10	7.57576
SDPR	0	genome.wustl.edu	37	2	192700704	192700704	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	2	192700704	192700704	C	T	SNP	SDPR	ENST00000304141	human	ensembl	74_37	-1	known	missense	c.1223	p.R408H	0.000	NULL	NULL	-	no_errors	SDPR	HGNC	ENSG00000168497				52	0	0	23	18	43.9024
SLC39A10	0	genome.wustl.edu	37	2	196548511	196548511	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	2	196548511	196548511	C	T	SNP	SLC39A10	ENST00000359634	human	ensembl	74_37	+1	known	missense	c.1097	p.A366V	0.999	NULL	pfam_ZIP	-	no_errors	SLC39A10	HGNC	ENSG00000196950				81	0	0	85	5	5.55556
KANSL3	0	genome.wustl.edu	37	2	97271204	97271204	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	2	97271204	97271204	G	T	SNP	KANSL3	ENST00000431828	human	ensembl	74_37	-1	known	missense	c.1786	p.L596I	0.943	NULL	NULL	-	no_errors	KANSL3	HGNC	ENSG00000114982				63	0	0	78	29	27.1028
HELZ2	0	genome.wustl.edu	37	20	62203721	62203721	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	20	62203721	62203721	G	A	SNP	HELZ2	ENST00000467148	human	ensembl	74_37	-1	known	silent	c.18	p.A6	0.011	NULL	superfamily_P-loop_NTPase	-	no_errors	HELZ2	HGNC	ENSG00000130589				9	0	0	2	2	50
UMODL1	0	genome.wustl.edu	37	21	43531059	43531059	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	21	43531059	43531059	C	T	SNP	UMODL1	ENST00000408989	human	ensembl	74_37	+1	known	missense	c.1727	p.T576M	0.065	NULL	pfam_ZP_dom,pfam_SEA_dom,pfam_EGF-like_Ca-bd_dom,pfam_EMI_domain,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_EGF-like_Ca-bd_dom,smart_Fibronectin_type3,smart_ZP_dom,pfscan_EG-like_dom,pfscan_EMI_domain,pfscan_Fibronectin_type3,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	UMODL1	HGNC	ENSG00000177398				19	0	0	10	6	37.5
LGALS1	0	genome.wustl.edu	37	22	38074508	38074508	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	22	38074508	38074508	C	T	SNP	LGALS1	ENST00000215909	human	ensembl	74_37	+1	known	silent	c.108	p.G36	1.000	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	pfam_Galectin_CRD,superfamily_ConA-like_lec_gl_sf,smart_Galectin_CRD	-	no_errors	LGALS1	HGNC	ENSG00000100097				39	0	0	21	28	57.1429
C3orf79	0	genome.wustl.edu	37	3	153203809	153203809	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	3	153203809	153203809	C	T	SNP	C3orf79	ENST00000446603	human	ensembl	74_37	+1	known	silent	c.138	p.S46	0.002	NULL	NULL	-	no_errors	C3orf79	HGNC	ENSG00000237787				8	0	0	2	3	60
ARHGEF26	0	genome.wustl.edu	37	3	153973256	153973256	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	3	153973256	153973256	C	T	SNP	ARHGEF26	ENST00000356448	human	ensembl	74_37	+1	known	silent	c.2610	p.N870	1.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF26	HGNC	ENSG00000114790				23	0	0	13	9	40.9091
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	74_37	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879				45	0	0	75	5	6.25
USP53	0	genome.wustl.edu	37	4	120177442	120177442	+	Missense_Mutation	SNP	C	C	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	4	120177442	120177442	C	G	SNP	USP53	ENST00000274030	human	ensembl	74_37	+1	known	missense	c.414	p.S138R	0.999	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP53	HGNC	ENSG00000145390				60	0	0	78	6	7.14286
MTNR1A	0	genome.wustl.edu	37	4	187455407	187455407	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	4	187455407	187455407	G	A	SNP	MTNR1A	ENST00000307161	human	ensembl	74_37	-1	known	silent	c.489	p.L163	0.043	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Melatonin_rcpt,prints_GPCR_Rhodpsn,prints_Mel_1A_rcpt,prints_NPY_rcpt,prints_Mel_rcpt_1C	-	no_errors	MTNR1A	HGNC	ENSG00000168412				79	0	0	42	3	6.66667
FRG1	0	genome.wustl.edu	37	4	190874269	190874269	+	Missense_Mutation	SNP	A	A	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	4	190874269	190874269	A	T	SNP	FRG1	ENST00000226798	human	ensembl	74_37	+1	known	missense	c.306	p.L102F	0.985	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_FRG1,pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FRG1	HGNC	ENSG00000109536				34	0	0	40	3	6.97674
RPL9	0	genome.wustl.edu	37	4	39458038	39458038	+	Missense_Mutation	SNP	G	G	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	4	39458038	39458038	G	C	SNP	RPL9	ENST00000295955	human	ensembl	74_37	-1	known	missense	c.379	p.R127G	1.000	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	pfam_Ribosomal_L6_a/b-dom,superfamily_Ribosomal_L6_a/b-dom,pirsf_Ribosomal_L6	-	no_errors	RPL9	HGNC	ENSG00000163682				55	0	0	29	15	34.0909
PARP8	0	genome.wustl.edu	37	5	50055476	50055476	+	Splice_Site	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	5	50055476	50055476	G	A	SNP	PARP8	ENST00000281631	human	ensembl	74_37	+1	known	splice_site	c.185-1	e4-1	1.000	-	-	-	no_errors	PARP8	HGNC	ENSG00000151883				38	0	0	45	6	11.7647
CWC27	0	genome.wustl.edu	37	5	64097145	64097145	+	Missense_Mutation	SNP	C	C	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	5	64097145	64097145	C	G	SNP	CWC27	ENST00000381070	human	ensembl	74_37	+1	known	missense	c.766	p.P256A	0.042	NULL	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	CWC27	HGNC	ENSG00000153015				12	0	0	9	8	47.0588
ARMC2	0	genome.wustl.edu	37	6	109274511	109274511	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	109274511	109274511	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	silent	c.1872	p.L624	0.998	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				47	0	0	17	16	48.4848
AMD1	0	genome.wustl.edu	37	6	111214017	111214017	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	111214017	111214017	G	T	SNP	AMD1	ENST00000368885	human	ensembl	74_37	+1	known	missense	c.695	p.G232V	1.000	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	pfam_S-AdoMet_decarboxylase,superfamily_S-AdoMet_deCO2ase_core,pirsf_S-AdoMet_decarboxylase_subgr,tigrfam_S-AdoMet_decarboxylase_subgr	-	no_errors	AMD1	HGNC	ENSG00000123505				109	0	0	47	36	43.3735
HIST1H3H	0	genome.wustl.edu	37	6	27777970	27777970	+	Missense_Mutation	SNP	A	A	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	27777970	27777970	A	C	SNP	HIST1H3H	ENST00000369163	human	ensembl	74_37	+1	known	missense	c.119	p.H40P	1.000	superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3H	HGNC	ENSG00000203813				49	0	0	41	9	18
C6orf106	0	genome.wustl.edu	37	6	34574511	34574511	+	Nonsense_Mutation	SNP	T	T	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	34574511	34574511	T	A	SNP	C6orf106	ENST00000374023	human	ensembl	74_37	-1	known	nonsense	c.682	p.K228*	1.000	NULL	superfamily_UBA-like	-	no_errors	C6orf106	HGNC	ENSG00000196821				39	0	0	44	6	12
C6orf106	0	genome.wustl.edu	37	6	34574534	34574534	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	34574534	34574534	C	T	SNP	C6orf106	ENST00000374023	human	ensembl	74_37	-1	known	missense	c.659	p.R220Q	1.000	NULL	superfamily_UBA-like	-	no_errors	C6orf106	HGNC	ENSG00000196821				47	0	0	47	6	11.3208
MLIP	0	genome.wustl.edu	37	6	54034364	54034364	+	Silent	SNP	C	C	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	54034364	54034364	C	A	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	silent	c.933	p.T311	1.000	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147				29	0	0	26	12	31.5789
PHF3	0	genome.wustl.edu	37	6	64410303	64410303	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	64410303	64410303	G	A	SNP	PHF3	ENST00000262043	human	ensembl	74_37	+1	known	missense	c.3046	p.E1016K	1.000	pfam_TFIIS_cen_dom,superfamily_TFIIS_cen_dom,smart_TFS2M	pfam_TFIIS_cen_dom,pfam_SPOC_C,pfam_Znf_PHD-finger,superfamily_TFIIS_cen_dom,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_TFS2M,pfscan_Znf_PHD-finger	-	no_errors	PHF3	HGNC	ENSG00000118482				53	0	0	68	6	8.10811
GABRR1	0	genome.wustl.edu	37	6	89890019	89890019	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	6	89890019	89890019	G	A	SNP	GABRR1	ENST00000454853	human	ensembl	74_37	-1	known	missense	c.1138	p.R380W	0.888	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAa_rho1_rcpt,prints_Neur_channel,prints_GABAAa_rho_rcpt,tigrfam_Neur_channel	-	no_errors	GABRR1	HGNC	ENSG00000146276				44	0	0	30	2	6.25
COL14A1	0	genome.wustl.edu	37	8	121256220	121256220	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	121256220	121256220	G	A	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.2452	p.V818I	0.989	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955				83	0	0	69	31	31
ATAD2	0	genome.wustl.edu	37	8	124382185	124382185	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	124382185	124382185	G	A	SNP	ATAD2	ENST00000287394	human	ensembl	74_37	-1	known	silent	c.807	p.D269	0.788	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_P-loop_NTPase,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC	ENSG00000156802				17	0	0	19	4	17.3913
BAI1	0	genome.wustl.edu	37	8	143623631	143623631	+	Missense_Mutation	SNP	G	G	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	143623631	143623631	G	C	SNP	BAI1	ENST00000323289	human	ensembl	74_37	+1	known	missense	c.4036	p.V1346L	1.000	NULL	pfam_GPCR_2_secretin-like,pfam_Thrombospondin_1_rpt,pfam_DUF3497,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like	-	no_errors	BAI1	HGNC	ENSG00000181790				59	0	0	64	5	7.24638
PSD3	0	genome.wustl.edu	37	8	18729821	18729821	+	Missense_Mutation	SNP	T	T	G			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	18729821	18729821	T	G	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.553	p.K185Q	0.001	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				75	0	0	65	9	12.1622
PSD3	0	genome.wustl.edu	37	8	18729822	18729822	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	18729822	18729822	G	T	SNP	PSD3	ENST00000440756	human	ensembl	74_37	-1	known	missense	c.552	p.N184K	0.003	NULL	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	PSD3	HGNC	ENSG00000156011				75	0	0	65	8	10.9589
NUGGC	0	genome.wustl.edu	37	8	27884560	27884560	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	27884560	27884560	C	T	SNP	NUGGC	ENST00000341513	human	ensembl	74_37	-1	known	missense	c.2164	p.V722M	0.884	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	-	no_errors	NUGGC	HGNC	ENSG00000189233				129	0	0	67	49	42.2414
PRKDC	0	genome.wustl.edu	37	8	48740855	48740855	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	8	48740855	48740855	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	74_37	-1	known	silent	c.8448	p.L2816	0.029	NULL	pfam_NUC194,pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PRKDC	HGNC	ENSG00000253729				20	0	0	27	7	20.5882
ASS1	0	genome.wustl.edu	37	9	133333964	133333964	+	Silent	SNP	C	C	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	9	133333964	133333964	C	T	SNP	ASS1	ENST00000352480	human	ensembl	74_37	+1	known	silent	c.351	p.G117	0.240	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707				18	0	0	17	2	10.5263
RPS6	0	genome.wustl.edu	37	9	19378872	19378872	+	Silent	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	9	19378872	19378872	G	A	SNP	RPS6	ENST00000380394	human	ensembl	74_37	-1	known	silent	c.183	p.F61	1.000	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	pfam_Ribosomal_S6e,pirsf_Ribosomal_S6_euk	-	no_errors	RPS6	HGNC	ENSG00000137154				39	0	0	27	3	10
ERMP1	0	genome.wustl.edu	37	9	5810125	5810125	+	Missense_Mutation	SNP	A	A	C			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	9	5810125	5810125	A	C	SNP	ERMP1	ENST00000339450	human	ensembl	74_37	-1	known	missense	c.1434	p.I478M	0.997	NULL	pfam_Peptidase_M28,pfam_Peptidase_M20	-	no_errors	ERMP1	HGNC	ENSG00000099219				116	0	0	51	39	43.3333
ENSG00000236733	0	genome.wustl.edu	37	9	71437457	71437457	+	RNA	SNP	G	G	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	9	71437457	71437457	G	T	SNP	ENSG00000236733	ENST00000442103	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-203L2.4	Clone_based_vega_gene	ENSG00000236733				19	0	0	15	10	40
SAGE1	0	genome.wustl.edu	37	X	134986673	134986673	+	Silent	SNP	A	A	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	X	134986673	134986673	A	T	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	silent	c.258	p.I86	0.056	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433				99	0	0	47	79	62.6984
L1CAM	0	genome.wustl.edu	37	X	153134082	153134082	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	X	153134082	153134082	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.1486	p.R496C	0.469	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910				39	0	0	44	5	10.2041
ZBTB40	0	genome.wustl.edu	37	1	22838561	22838563	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	22838561	22838563	AAG	-	DEL	ZBTB40	ENST00000375647	human	ensembl	74_37	+1	known	in_frame_del	c.2395_2397	p.K802in_frame_del	1.000:1.000:1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB40	HGNC	ENSG00000184677				62	0	0	48	5	9.43396
DNAJC6	0	genome.wustl.edu	37	1	65871724	65871724	+	Frame_Shift_Del	DEL	A	A	-			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	1	65871724	65871724	A	-	DEL	DNAJC6	ENST00000371069	human	ensembl	74_37	+1	known	frame_shift_del	c.2399	p.H800fs	1.000	superfamily_DnaJ_domain	pfam_Tensin_phosphatase_C2-dom,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_C2_dom,smart_DnaJ_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom,pfscan_DnaJ_domain	-	no_errors	DNAJC6	HGNC	ENSG00000116675				99	0	0	48	36	42.8571
MMP12	0	genome.wustl.edu	37	11	102738793	102738794	+	RNA	INS	-	-	T			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	102738793	102738794	-	T	INS	MMP12	ENST00000326227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.975:1.000	-	-	-	no_errors	MMP12	HGNC	ENSG00000110347				8	0	0	11	5	31.25
NCAPD3	0	genome.wustl.edu	37	11	134078847	134078848	+	Splice_Site	INS	-	-	A			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	134078847	134078848	-	A	INS	NCAPD3	ENST00000534548	human	ensembl	74_37	-1	known	splice_site_ins	c.795-3_795-2	e7-2	1.000:0.997	-	-	-	no_errors	NCAPD3	HGNC	ENSG00000151503				24	0	0	25	2	7.40741
C11orf54	0	genome.wustl.edu	37	11	93486914	93486914	+	Frame_Shift_Del	DEL	A	A	-			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	11	93486914	93486914	A	-	DEL	C11orf54	ENST00000331239	human	ensembl	74_37	+1	known	frame_shift_del	c.221	p.V77fs	0.016	pfam_DUF1907	pfam_DUF1907	-	no_errors	C11orf54	HGNC	ENSG00000182919				26	0	0	25	3	10.7143
MIR370	0	genome.wustl.edu	37	14	101377543	101377546	+	RNA	DEL	GTCT	GTCT	-			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	GTCT	GTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	14	101377543	101377546	GTCT	-	DEL	MIR370	ENST00000362135	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	-	no_errors	MIR370	HGNC	ENSG00000199005				37	0	0	23	2	8
APC	0	genome.wustl.edu	37	5	112175944	112175945	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-FP-7735-01A-11D-2053-08	TCGA-FP-7735-10A-01D-2053-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	fe717798-d698-49c2-bbc9-e0c5679505c1	2610c0da-b6d7-4109-9949-6a1023488172	5	112175944	112175945	AG	-	DEL	APC	ENST00000257430	human	ensembl	74_37	+1	known	frame_shift_del	c.4653_4654	p.E1552fs	0.989:0.999	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982				53	0	0	22	12	35.2941
