Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CAPN2	0	genome.wustl.edu	37	1	223943324	223943324	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	1	223943324	223943324	G	A	SNP	CAPN2	ENST00000295006	human	ensembl	74_37	+1	known	missense	c.1278	p.M426I	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN2	HGNC	ENSG00000162909				32	0	0	21	3	12.5
ARMC4	0	genome.wustl.edu	37	10	28250610	28250610	+	Missense_Mutation	SNP	C	C	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	10	28250610	28250610	C	A	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	missense	c.1273	p.D425Y	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				22	0	0	11	5	31.25
ARMC4	0	genome.wustl.edu	37	10	28250635	28250635	+	Silent	SNP	A	A	C			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	10	28250635	28250635	A	C	SNP	ARMC4	ENST00000305242	human	ensembl	74_37	-1	known	silent	c.1248	p.A416	0.002	NULL	pfam_Armadillo,superfamily_ARM-type_fold,superfamily_GSKIP_dom,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC4	HGNC	ENSG00000169126				21	0	0	17	4	19.0476
UNC5B	0	genome.wustl.edu	37	10	73057762	73057762	+	Missense_Mutation	SNP	C	C	T			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	10	73057762	73057762	C	T	SNP	UNC5B	ENST00000335350	human	ensembl	74_37	+1	known	missense	c.2587	p.R863C	1.000	superfamily_DEATH-like_dom,smart_Death_domain	pfam_ZU5,pfam_Ig_I-set,pfam_Death_domain,pfam_Thrombospondin_1_rpt,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5B	HGNC	ENSG00000107731				41	0	0	40	4	9.09091
SLC28A2	0	genome.wustl.edu	37	15	45564491	45564491	+	Splice_Site	SNP	A	A	G			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	15	45564491	45564491	A	G	SNP	SLC28A2	ENST00000347644	human	ensembl	74_37	+1	known	splice_site	c.1649-2	e15-2	1.000	-	-	-	no_errors	SLC28A2	HGNC	ENSG00000137860				49	0	0	22	3	12
TNRC6A	0	genome.wustl.edu	37	16	24834270	24834270	+	Missense_Mutation	SNP	G	G	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	16	24834270	24834270	G	A	SNP	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	missense	c.5449	p.G1817R	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905				53	0	0	48	4	7.69231
CDH1	0	genome.wustl.edu	37	16	68844182	68844182	+	Missense_Mutation	SNP	A	A	G			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	16	68844182	68844182	A	G	SNP	CDH1	ENST00000261769	human	ensembl	74_37	+1	known	missense	c.770	p.D257G	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068				46	0	0	48	6	11.1111
NTSR2	0	genome.wustl.edu	37	2	11802136	11802136	+	Silent	SNP	G	G	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	2	11802136	11802136	G	A	SNP	NTSR2	ENST00000306928	human	ensembl	74_37	-1	known	silent	c.855	p.D285	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NT2_rcpt,prints_NT_rcpt,prints_GPCR_Rhodpsn	-	no_errors	NTSR2	HGNC	ENSG00000169006				88	0	0	64	5	7.24638
SH3BP4	0	genome.wustl.edu	37	2	235951626	235951626	+	Nonsense_Mutation	SNP	C	C	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	2	235951626	235951626	C	A	SNP	SH3BP4	ENST00000344528	human	ensembl	74_37	+1	known	nonsense	c.2213	p.S738*	0.022	NULL	pfam_SH3_2,pfam_SH3_domain,pfam_ZU5,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3BP4	HGNC	ENSG00000130147				44	0	0	40	3	6.97674
STAB1	0	genome.wustl.edu	37	3	52554531	52554531	+	Missense_Mutation	SNP	G	G	T			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	3	52554531	52554531	G	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.5615	p.R1872L	1.000	NULL	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327				22	0	0	26	2	7.14286
SLU7	0	genome.wustl.edu	37	5	159830390	159830390	+	Missense_Mutation	SNP	T	T	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	5	159830390	159830390	T	A	SNP	SLU7	ENST00000297151	human	ensembl	74_37	-1	known	missense	c.1663	p.M555L	0.106	NULL	pfam_Slu7,superfamily_Znf_CCHC	-	no_errors	SLU7	HGNC	ENSG00000164609				117	0	0	103	6	5.50459
GTF2IRD2P1	0	genome.wustl.edu	37	7	72658179	72658179	+	RNA	SNP	T	T	C			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	7	72658179	72658179	T	C	SNP	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.173	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544				26	0	0	34	3	8.10811
TUBBP5	0	genome.wustl.edu	37	9	141070116	141070116	+	RNA	SNP	G	G	A			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	9	141070116	141070116	G	A	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247				57	0	0	48	4	7.69231
ROM1	0	genome.wustl.edu	37	11	62381084	62381084	+	Frame_Shift_Del	DEL	G	G	-			TCGA-FP-8210-01A-11D-2340-08	TCGA-FP-8210-11A-01D-2340-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	684ff3b4-a44b-46c5-8739-8dfcf614e534	5e6337c8-d4d5-48d8-9311-f286f2126e4e	11	62381084	62381084	G	-	DEL	ROM1	ENST00000278833	human	ensembl	74_37	+1	known	frame_shift_del	c.331	p.L114fs	0.023	pfam_Tetraspanin/Peripherin,prints_Peripherin/rom-1	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Peripherin/rom-1	-	no_errors	ROM1	HGNC	ENSG00000149489				25	0	0	24	2	7.69231
