Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RGS7	0	genome.wustl.edu	37	1	240969581	240969581	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	1	240969581	240969581	T	G	SNP	RGS7	ENST00000407727	human	ensembl	74_37	-1	known	missense	c.1128	p.E376D	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS7	HGNC	ENSG00000182901				187	0	0	89	7	7.29167
AHNAK	0	genome.wustl.edu	37	11	62291408	62291408	+	Missense_Mutation	SNP	A	A	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	11	62291408	62291408	A	C	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.10481	p.V3494G	0.973	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942				149	0	0	75	4	5.06329
WSCD2	0	genome.wustl.edu	37	12	108603931	108603931	+	Silent	SNP	C	C	T			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	12	108603931	108603931	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	silent	c.531	p.A177	0.605	pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035				89	0	0	67	7	9.45946
SART3	0	genome.wustl.edu	37	12	108923993	108923993	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	12	108923993	108923993	T	C	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	missense	c.1841	p.K614R	0.976	NULL	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856				203	1	0.490196	86	10	10.4167
JAG2	0	genome.wustl.edu	37	14	105609123	105609123	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	14	105609123	105609123	G	A	SNP	JAG2	ENST00000331782	human	ensembl	74_37	-1	known	missense	c.3626	p.P1209L	0.000	NULL	pfam_EG-like_dom,pfam_Notch_ligand_N,pfam_DSL,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,smart_DSL,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_VWC_out,smart_VWF_C,pfscan_DSL,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	JAG2	HGNC	ENSG00000184916				34	0	0	30	3	9.09091
CHEK2P2	0	genome.wustl.edu	37	15	20496770	20496770	+	RNA	SNP	T	T	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	15	20496770	20496770	T	C	SNP	CHEK2P2	ENST00000555186	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.053	-	-	-	no_errors	CHEK2P2	HGNC	ENSG00000259156				27	0	0	13	6	31.5789
PPP4R1	0	genome.wustl.edu	37	18	9570581	9570581	+	Missense_Mutation	SNP	T	T	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	18	9570581	9570581	T	C	SNP	PPP4R1	ENST00000400556	human	ensembl	74_37	-1	known	missense	c.1147	p.M383V	0.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	PPP4R1	HGNC	ENSG00000154845				127	0	0	72	5	6.49351
RHPN2	0	genome.wustl.edu	37	19	33498986	33498986	+	Missense_Mutation	SNP	T	T	G			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	19	33498986	33498986	T	G	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	missense	c.694	p.T232P	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941				51	0	0	32	4	11.1111
MAP2K2	0	genome.wustl.edu	37	19	4110645	4110645	+	Silent	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	19	4110645	4110645	G	A	SNP	MAP2K2	ENST00000262948	human	ensembl	74_37	-1	known	silent	c.312	p.H104	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP2K2	HGNC	ENSG00000126934				63	0	0	51	4	7.27273
GNAS	0	genome.wustl.edu	37	20	57429951	57429951	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	20	57429951	57429951	G	A	SNP	GNAS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.1631	p.R544Q	0.998	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460				26	0	0	20	3	13.0435
ZNF512B	0	genome.wustl.edu	37	20	62592661	62592661	+	Splice_Site	SNP	C	C	T			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	20	62592661	62592661	C	T	SNP	ZNF512B	ENST00000217130	human	ensembl	74_37	-1	known	splice_site	c.2427+1	e15+1	1.000	-	-	-	no_errors	ZNF512B	HGNC	ENSG00000196700				77	0	0	63	6	8.69565
ARVCF	0	genome.wustl.edu	37	22	19961298	19961298	+	Missense_Mutation	SNP	C	C	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	22	19961298	19961298	C	A	SNP	ARVCF	ENST00000263207	human	ensembl	74_37	-1	known	missense	c.2107	p.A703S	1.000	superfamily_ARM-type_fold,smart_Armadillo	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARVCF	HGNC	ENSG00000099889				179	0	0	113	9	7.37705
MST1	0	genome.wustl.edu	37	3	49723792	49723792	+	Nonsense_Mutation	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	3	49723792	49723792	G	A	SNP	MST1	ENST00000449682	human	ensembl	74_37	-1	known	nonsense	c.970	p.Q324*	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MST1	HGNC	ENSG00000173531				45	0	0	37	4	9.7561
CCDC112	0	genome.wustl.edu	37	5	114611197	114611197	+	Missense_Mutation	SNP	A	A	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	5	114611197	114611197	A	C	SNP	CCDC112	ENST00000379611	human	ensembl	74_37	-1	known	missense	c.634	p.F212V	0.824	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC112	HGNC	ENSG00000164221				177	0	0	74	5	6.32911
SPARC	0	genome.wustl.edu	37	5	151045986	151045986	+	Missense_Mutation	SNP	A	A	T			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	5	151045986	151045986	A	T	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	missense	c.670	p.Y224N	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140				109	0	0	59	4	6.34921
SGK1	0	genome.wustl.edu	37	6	134492798	134492798	+	Missense_Mutation	SNP	A	A	C			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	6	134492798	134492798	A	C	SNP	SGK1	ENST00000367858	human	ensembl	74_37	-1	known	missense	c.1144	p.L382V	0.996	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_Phox,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	SGK1	HGNC	ENSG00000118515				73	0	0	54	4	6.89655
WEE2	0	genome.wustl.edu	37	7	141424832	141424832	+	Missense_Mutation	SNP	C	C	T			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	7	141424832	141424832	C	T	SNP	WEE2	ENST00000397541	human	ensembl	74_37	+1	known	missense	c.1228	p.R410W	0.659	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE2	HGNC	ENSG00000214102				154	0	0	86	5	5.49451
OXR1	0	genome.wustl.edu	37	8	107719383	107719383	+	Missense_Mutation	SNP	A	A	G			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	8	107719383	107719383	A	G	SNP	OXR1	ENST00000497705	human	ensembl	74_37	+1	known	missense	c.1433	p.Y478C	0.007	NULL	pfam_LysM_dom,pfam_GRAM,smart_LysM_dom	-	no_errors	OXR1	HGNC	ENSG00000164830				66	0	0	35	4	10.2564
MT-ND5	0	genome.wustl.edu	37	MT	13466	13466	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	MT	13466	13466	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1130	p.S377N	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786				107	0	0	20	4	16.6667
MT-CO2	0	genome.wustl.edu	37	MT	8166	8166	+	Missense_Mutation	SNP	G	G	A			TCGA-HU-A4HB-01A-12D-A25D-08	TCGA-HU-A4HB-10A-01D-A25E-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	b05e19b7-8ecd-4062-95e3-0d3e9ce55d73	ffe4d39e-2260-4a22-a99c-ff0965307c00	MT	8166	8166	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.581	p.G194D	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712				97	0	0	21	3	12.5
