Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA3	0	genome.wustl.edu	37	16	2349508	2349508	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	16	2349508	2349508	C	T	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	missense	c.1637	p.R546K	0.000	superfamily_P-loop_NTPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	tier1	-	-	227	0	0.00	118	21	15.11
ASIC2	0	genome.wustl.edu	37	17	31415932	31415932	+	Silent	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	17	31415932	31415932	G	T	SNP	ASIC2	ENST00000225823	human	ensembl	74_37	-1	known	silent	c.936	p.G312	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	ASIC2	HGNC	ENSG00000108684	tier1	-	-	55	0	0.00	35	4	10.26
ATP6V0D2	0	genome.wustl.edu	37	8	87165044	87165044	+	Splice_Site	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	87165044	87165044	G	A	SNP	ATP6V0D2	ENST00000285393	human	ensembl	74_37	+1	known	splice_site	c.892-1	e8-1	1.000	-	-	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	tier1	-	-	179	0	0.00	90	32	26.23
ATP6V0D2	0	genome.wustl.edu	37	8	87165113	87165113	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	87165113	87165113	G	A	SNP	ATP6V0D2	ENST00000285393	human	ensembl	74_37	+1	known	silent	c.960	p.L320	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	tier1	-	-	186	0	0.00	108	28	20.59
ATP6V0D2	0	genome.wustl.edu	37	8	87165116	87165116	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	87165116	87165116	G	A	SNP	ATP6V0D2	ENST00000285393	human	ensembl	74_37	+1	known	silent	c.963	p.K321	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	tier1	-	-	180	0	0.00	100	34	25.37
ATP6V0D2	0	genome.wustl.edu	37	8	87165130	87165130	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	87165130	87165130	G	A	SNP	ATP6V0D2	ENST00000285393	human	ensembl	74_37	+1	known	missense	c.977	p.R326K	1.000	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	pfam_ATPase_V0-cplx_csu/dsu,superfamily_ATPase_V0-cplx_csu/dsu,pirsf_ATPase_V0-cplx_dsu	-	no_errors	ATP6V0D2	HGNC	ENSG00000147614	tier1	-	-	145	0	0.00	79	31	28.18
CACNA1I	0	genome.wustl.edu	37	22	39966878	39966878	+	Missense_Mutation	SNP	C	C	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	22	39966878	39966878	C	A	SNP	CACNA1I	ENST00000336649	human	ensembl	74_37	+1	known	missense	c.121	p.P41T	0.961	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1I	HGNC	ENSG00000100346	tier1	-	-	96	0	0.00	49	13	20.97
CRYGA	0	genome.wustl.edu	37	2	209028015	209028015	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	2	209028015	209028015	C	T	SNP	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	silent	c.165	p.Q55	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582	tier1	-	-	68	0	0.00	46	7	13.21
CYTH1	0	genome.wustl.edu	37	17	76696475	76696475	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	17	76696475	76696475	C	T	SNP	CYTH1	ENST00000361101	human	ensembl	74_37	-1	known	missense	c.488	p.R163Q	1.000	pfam_Sec7_dom,superfamily_Sec7_dom,smart_Sec7_dom,pfscan_Sec7_dom	pfam_Sec7_dom,pfam_Pleckstrin_homology,superfamily_Sec7_dom,smart_Sec7_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7_dom	-	no_errors	CYTH1	HGNC	ENSG00000108669	tier1	-	-	26	0	0.00	23	4	14.81
DNAJB1	0	genome.wustl.edu	37	19	14627601	14627601	+	Missense_Mutation	SNP	G	G	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	19	14627601	14627601	G	C	SNP	DNAJB1	ENST00000254322	human	ensembl	74_37	-1	known	missense	c.469	p.R157G	0.003	NULL	pfam_DnaJ_C,pfam_DnaJ_domain,superfamily_DnaJ_domain,superfamily_HSP40/DnaJ_pept-bd,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJB1	HGNC	ENSG00000132002	tier1	-	-	168	0	0.00	106	14	11.67
DPEP3	0	genome.wustl.edu	37	16	68014035	68014035	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	16	68014035	68014035	G	A	SNP	DPEP3	ENST00000268793	human	ensembl	74_37	-1	known	silent	c.324	p.R108	0.000	NULL	pfam_Peptidase_M19	-	no_errors	DPEP3	HGNC	ENSG00000141096	tier1	-	-	146	0	0.00	88	17	16.19
EIF5	0	genome.wustl.edu	37	14	103802113	103802113	+	RNA	SNP	A	A	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	14	103802113	103802113	A	T	SNP	EIF5	ENST00000560200	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EIF5	HGNC	ENSG00000100664	tier1	-	-	68	0	0.00	36	9	20.00
EMID1	0	genome.wustl.edu	37	22	29654839	29654839	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	22	29654839	29654839	G	A	SNP	EMID1	ENST00000334018	human	ensembl	74_37	+1	known	missense	c.1238	p.G413D	0.976	NULL	pfam_Collagen,pfam_EMI_domain,pfscan_EMI_domain	-	no_errors	EMID1	HGNC	ENSG00000186998				86	0	0.00	44	4	8.33
FXR2	0	genome.wustl.edu	37	17	7495631	7495631	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	17	7495631	7495631	G	A	SNP	FXR2	ENST00000250113	human	ensembl	74_37	-1	known	missense	c.1867	p.R623C	1.000	NULL	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	tier1	-	-	177	0	0.00	95	25	20.83
GAB2	0	genome.wustl.edu	37	11	77961262	77961262	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	77961262	77961262	G	A	SNP	GAB2	ENST00000361507	human	ensembl	74_37	-1	known	silent	c.561	p.S187	0.973	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB2	HGNC	ENSG00000033327	tier1	-	-	241	0	0.00	139	38	21.47
GABRA4	0	genome.wustl.edu	37	4	46995388	46995388	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	46995388	46995388	G	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	silent	c.54	p.F18	1.000	NULL	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	tier1	-	-	149	0	0.00	102	22	17.74
GABRB1	0	genome.wustl.edu	37	4	47405725	47405725	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	47405725	47405725	C	T	SNP	GABRB1	ENST00000295454	human	ensembl	74_37	+1	known	silent	c.832	p.L278	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_GABAAb_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRB1	HGNC	ENSG00000163288	tier1	-	-	153	0	0.00	72	14	16.28
GGCX	0	genome.wustl.edu	37	2	85777204	85777204	+	Silent	SNP	A	A	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	2	85777204	85777204	A	T	SNP	GGCX	ENST00000233838	human	ensembl	74_37	-1	known	silent	c.2130	p.R710	0.213	NULL	pfam_VKG_COase,superfamily_RmlC_Cupin,smart_HTTM	-	no_errors	GGCX	HGNC	ENSG00000115486				81	0	0.00	49	4	7.55
GRM7	0	genome.wustl.edu	37	3	6903133	6903133	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	3	6903133	6903133	G	A	SNP	GRM7	ENST00000402647	human	ensembl	74_37	+1	known	missense	c.58	p.V20M	1.000	prints_GPCR_3_mtglu_rcpt_7	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_7,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM7	HGNC	ENSG00000196277	tier1	-	-	20	0	0.00	9	5	35.71
HIST1H1B	0	genome.wustl.edu	37	6	27835239	27835241	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	6	27835239	27835241	CTT	-	DEL	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	in_frame_del	c.69_67	p.K23in_frame_del	0.386:1.000:1.000	NULL	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357	tier1			94	0	0.00	65	17	20.73
INHBB	0	genome.wustl.edu	37	2	121107004	121107004	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	2	121107004	121107004	G	A	SNP	INHBB	ENST00000295228	human	ensembl	74_37	+1	known	missense	c.778	p.V260M	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_betaB,prints_Inhibin_asu	-	no_errors	INHBB	HGNC	ENSG00000163083	tier1	-	-	137	0	0.00	66	15	18.52
INTS4	0	genome.wustl.edu	37	11	77602877	77602877	+	Silent	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	77602877	77602877	G	T	SNP	INTS4	ENST00000534064	human	ensembl	74_37	-1	known	silent	c.2298	p.I766	0.076	NULL	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	tier1	-	-	113	0	0.00	63	9	12.50
ITGB7	0	genome.wustl.edu	37	12	53586947	53586947	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	12	53586947	53586947	C	T	SNP	ITGB7	ENST00000267082	human	ensembl	74_37	-1	known	missense	c.1703	p.R568Q	0.991	pirsf_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	tier1	-	-	33	0	0.00	24	7	22.58
JAKMIP1	0	genome.wustl.edu	37	4	6082025	6082025	+	Silent	SNP	T	T	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	6082025	6082025	T	A	SNP	JAKMIP1	ENST00000409021	human	ensembl	74_37	-1	known	silent	c.1116	p.S372	0.001	NULL	NULL	-	no_errors	JAKMIP1	HGNC	ENSG00000152969				50	0	0.00	37	4	9.76
KIAA1549	0	genome.wustl.edu	37	7	138566162	138566162	+	Missense_Mutation	SNP	G	G	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	138566162	138566162	G	C	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.4201	p.P1401A	0.856	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	118	0	0.00	55	19	25.68
KIF2B	0	genome.wustl.edu	37	17	51902066	51902066	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	17	51902066	51902066	G	A	SNP	KIF2B	ENST00000268919	human	ensembl	74_37	+1	known	missense	c.1672	p.G558R	0.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF2B	HGNC	ENSG00000141200	tier1	-	-	151	0	0.00	99	36	26.67
KLHL23	0	genome.wustl.edu	37	2	170606068	170606068	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	2	170606068	170606068	C	T	SNP	KLHL23	ENST00000272797	human	ensembl	74_37	+1	known	silent	c.1503	p.C501	0.999	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL23	HGNC	ENSG00000213160	tier1	-	-	110	0	0.00	68	20	22.47
KRT14	0	genome.wustl.edu	37	17	39742686	39742686	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	17	39742686	39742686	C	T	SNP	KRT14	ENST00000167586	human	ensembl	74_37	-1	known	missense	c.401	p.R134H	0.891	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	tier1	-	-	222	0	0.00	157	26	14.21
LMO7	0	genome.wustl.edu	37	13	76408361	76408361	+	Splice_Site	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	13	76408361	76408361	G	A	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	splice_site	c.3221-1	e18-1	1.000	-	-	-	no_errors	LMO7	HGNC	ENSG00000136153	tier1	-	-	112	0	0.00	88	8	8.33
LTF	0	genome.wustl.edu	37	3	46497788	46497788	+	Missense_Mutation	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	3	46497788	46497788	G	T	SNP	LTF	ENST00000231751	human	ensembl	74_37	-1	known	missense	c.308	p.T103N	0.040	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	LTF	HGNC	ENSG00000012223	tier1	-	-	74	0	0.00	49	10	16.95
MAGI2	0	genome.wustl.edu	37	7	77998505	77998505	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	77998505	77998505	G	A	SNP	MAGI2	ENST00000354212	human	ensembl	74_37	-1	known	silent	c.1071	p.I357	1.000	pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI2	HGNC	ENSG00000187391	tier1	-	-	188	0	0.00	93	17	15.45
MUC5AC	0	genome.wustl.edu	37	11	1221128	1221128	+	RNA	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	1221128	1221128	G	A	SNP	MUC5AC	ENST00000358378	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	MUC5AC	HGNC	ENSG00000215182	tier1	-	-	42	0	0.00	12	4	23.53
MUC6	0	genome.wustl.edu	37	11	1016004	1016006	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	1016004	1016006	GAG	-	DEL	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	in_frame_del	c.6797_6795	p.S2266in_frame_del	0.309:0.309:0.295	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	tier1			340	0	0.00	164	32	16.33
MUC6	0	genome.wustl.edu	37	11	1033061	1033061	+	Missense_Mutation	SNP	A	A	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	1033061	1033061	A	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.67	p.S23T	0.003	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	tier1	-	-	141	0	0.00	81	9	10.00
OCIAD1	0	genome.wustl.edu	37	4	48851986	48851986	+	Silent	SNP	T	T	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	48851986	48851986	T	C	SNP	OCIAD1	ENST00000264312	human	ensembl	74_37	+1	known	silent	c.264	p.F88	1.000	pfam_OCIA	pfam_OCIA	-	no_errors	OCIAD1	HGNC	ENSG00000109180	tier1	-	-	122	0	0.00	73	16	17.98
OR2T33	0	genome.wustl.edu	37	1	248437000	248437000	+	Silent	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	1	248437000	248437000	G	T	SNP	OR2T33	ENST00000318021	human	ensembl	74_37	-1	known	silent	c.117	p.G39	0.381	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	tier1	-	-	88	0	0.00	34	23	40.35
OR4K13	0	genome.wustl.edu	37	14	20502653	20502653	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	14	20502653	20502653	G	A	SNP	OR4K13	ENST00000315693	human	ensembl	74_37	-1	known	missense	c.265	p.R89C	0.001	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K13	HGNC	ENSG00000176253	tier1	rs149397731	-	69	0	0.00	48	9	15.79
OR8H3	0	genome.wustl.edu	37	11	55890027	55890027	+	Missense_Mutation	SNP	T	T	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	55890027	55890027	T	A	SNP	OR8H3	ENST00000313472	human	ensembl	74_37	+1	known	missense	c.179	p.M60K	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8H3	HGNC	ENSG00000181761	tier1	-	-	464	0	0.00	318	51	13.82
PAPPA	0	genome.wustl.edu	37	9	119094640	119094640	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	9	119094640	119094640	C	T	SNP	PAPPA	ENST00000328252	human	ensembl	74_37	+1	known	missense	c.3290	p.A1097V	0.990	NULL	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	tier1	-	-	119	0	0.00	60	18	23.08
PCDH10	0	genome.wustl.edu	37	4	134073569	134073571	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	134073569	134073571	CTG	-	DEL	PCDH10	ENST00000264360	human	ensembl	74_37	+1	known	in_frame_del	c.2274_2276	p.C762in_frame_del	0.999:1.000:1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH10	HGNC	ENSG00000138650	tier1			41	0	0.00	40	5	11.11
PCDHB4	0	genome.wustl.edu	37	5	140501614	140501614	+	Missense_Mutation	SNP	C	C	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	5	140501614	140501614	C	A	SNP	PCDHB4	ENST00000194152	human	ensembl	74_37	+1	known	missense	c.34	p.Q12K	1.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB4	HGNC	ENSG00000081818	tier1	-	-	59	0	0.00	41	11	21.15
PLK3	0	genome.wustl.edu	37	1	45268798	45268798	+	Missense_Mutation	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	1	45268798	45268798	G	T	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	missense	c.921	p.Q307H	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	tier1	-	-	94	0	0.00	49	12	19.67
POLN	0	genome.wustl.edu	37	4	2172897	2172897	+	Missense_Mutation	SNP	C	C	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	4	2172897	2172897	C	A	SNP	POLN	ENST00000382865	human	ensembl	74_37	-1	known	missense	c.1386	p.K462N	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA_polymerase_A	-	no_errors	POLN	HGNC	ENSG00000130997	tier1	-	-	167	0	0.00	82	18	18.00
POM121C	0	genome.wustl.edu	37	7	75052198	75052198	+	Missense_Mutation	SNP	G	G	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	75052198	75052198	G	T	SNP	POM121C	ENST00000257665	human	ensembl	74_37	-1	known	missense	c.2063	p.T688N	0.040	NULL	NULL	-	no_errors	POM121C	HGNC	ENSG00000135213	tier1	-	-	51	0	0.00	16	6	27.27
POM121L12	0	genome.wustl.edu	37	7	53103786	53103786	+	Missense_Mutation	SNP	T	T	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	53103786	53103786	T	A	SNP	POM121L12	ENST00000408890	human	ensembl	74_37	+1	known	missense	c.422	p.I141N	0.007	NULL	NULL	-	no_errors	POM121L12	HGNC	ENSG00000221900	tier1	-	-	38	0	0.00	24	7	22.58
POTEC	0	genome.wustl.edu	37	18	14537968	14537968	+	Silent	SNP	T	T	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	18	14537968	14537968	T	C	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.642	p.V214	0.996	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206	tier1	-	-	186	0	0.00	90	20	18.18
PTCH2	0	genome.wustl.edu	37	1	45295610	45295610	+	Missense_Mutation	SNP	C	C	G			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	1	45295610	45295610	C	G	SNP	PTCH2	ENST00000372192	human	ensembl	74_37	-1	known	missense	c.906	p.M302I	0.002	tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH2	HGNC	ENSG00000117425	tier1	-	-	46	0	0.00	25	11	30.56
PTPRB	0	genome.wustl.edu	37	12	70989988	70989988	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	12	70989988	70989988	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	missense	c.1099	p.E367K	0.862	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	tier1	-	-	105	0	0.00	65	41	38.68
PTPRB	0	genome.wustl.edu	37	12	70990049	70990049	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	12	70990049	70990049	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	silent	c.1038	p.L346	0.940	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	tier1	-	-	39	0	0.00	20	22	52.38
PTPRB	0	genome.wustl.edu	37	12	70990070	70990070	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	12	70990070	70990070	C	T	SNP	PTPRB	ENST00000334414	human	ensembl	74_37	-1	known	silent	c.1017	p.E339	0.451	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329				22	0	0.00	20	18	47.37
RBM24	0	genome.wustl.edu	37	6	17292448	17292449	+	RNA	INS	-	-	AA			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	6	17292448	17292449	-	AA	INS	RBM24	ENST00000504055	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.915	-	-	-	no_errors	RBM24	HGNC	ENSG00000112183	tier1			36	0	0.00	25	5	16.67
SLC25A45	0	genome.wustl.edu	37	11	65144356	65144356	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	65144356	65144356	C	T	SNP	SLC25A45	ENST00000398802	human	ensembl	74_37	-1	known	silent	c.531	p.T177	0.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A45	HGNC	ENSG00000162241	tier1	-	-	219	0	0.00	125	24	16.00
SLC6A3	0	genome.wustl.edu	37	5	1406321	1406321	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	5	1406321	1406321	G	A	SNP	SLC6A3	ENST00000270349	human	ensembl	74_37	-1	known	silent	c.1581	p.V527	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_dopamine	-	no_errors	SLC6A3	HGNC	ENSG00000142319	tier1	-	-	158	0	0.00	91	17	15.60
SMG1	0	genome.wustl.edu	37	16	18853076	18853076	+	Silent	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	16	18853076	18853076	G	A	SNP	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	silent	c.6507	p.F2169	0.994	pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	tier1	-	-	305	0	0.00	202	28	12.17
SP8	0	genome.wustl.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	20824941	20824943	GCC	-	DEL	SP8	ENST00000418710	human	ensembl	74_37	-1	known	in_frame_del	c.495_493	p.G165in_frame_del	0.025:0.971:0.997	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651	tier1			8	0	0.00	2	5	71.43
SPRED1	0	genome.wustl.edu	37	15	38643535	38643535	+	Silent	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	15	38643535	38643535	C	T	SNP	SPRED1	ENST00000299084	human	ensembl	74_37	+1	known	silent	c.1005	p.C335	1.000	pfam_Sprouty	pfam_Sprouty,pfam_WH1/EVH1,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	SPRED1	HGNC	ENSG00000166068	tier1	-	-	127	0	0.00	95	24	20.17
SSPO	0	genome.wustl.edu	37	7	149519712	149519712	+	RNA	DEL	C	C	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	7	149519712	149519712	C	-	DEL	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.176	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1			27	0	0.00	9	2	18.18
TGFBI	0	genome.wustl.edu	37	5	135394905	135394906	+	Splice_Site	INS	-	-	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	5	135394905	135394906	-	A	INS	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	splice_site_ins	c.1803+2_1803+1	e13+2	1.000:0.997	-	-	-	no_errors	TGFBI	HGNC	ENSG00000120708	tier1			30	0	0.00	10	8	44.44
TGFBRAP1	0	genome.wustl.edu	37	2	105924736	105924736	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	2	105924736	105924736	G	A	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	missense	c.23	p.T8M	0.922	NULL	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	tier1	rs141519266	-	40	0	0.00	28	4	12.50
THAP3	0	genome.wustl.edu	37	1	6685326	6685326	+	Frame_Shift_Del	DEL	C	C	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	1	6685326	6685326	C	-	DEL	THAP3	ENST00000054650	human	ensembl	74_37	+1	known	frame_shift_del	c.48	p.R17fs	0.973	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	pfam_Znf_C2CH,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	THAP3	HGNC	ENSG00000041988	tier1			18	0	0.00	2	2	50.00
TJP1	0	genome.wustl.edu	37	15	30029527	30029527	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	15	30029527	30029527	C	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.1348	p.V450I	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	tier1	-	-	187	0	0.00	131	21	13.82
TMC1	0	genome.wustl.edu	37	9	75303654	75303654	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	9	75303654	75303654	G	A	SNP	TMC1	ENST00000297784	human	ensembl	74_37	+1	known	missense	c.46	p.E16K	0.383	NULL	pfam_TMC	-	no_errors	TMC1	HGNC	ENSG00000165091	tier1	rs140437301	-	47	0	0.00	32	5	13.51
TMC2	0	genome.wustl.edu	37	20	2621849	2621849	+	Missense_Mutation	SNP	A	A	G			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	20	2621849	2621849	A	G	SNP	TMC2	ENST00000358864	human	ensembl	74_37	+1	known	missense	c.2573	p.N858S	0.011	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	tier1	-	-	114	0	0.00	79	28	26.17
TNFRSF21	0	genome.wustl.edu	37	6	47221027	47221027	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	6	47221027	47221027	C	T	SNP	TNFRSF21	ENST00000296861	human	ensembl	74_37	-1	known	missense	c.1474	p.E492K	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Death_domain,superfamily_DEATH-like_dom,smart_TNFR/NGFR_Cys_rich_reg,smart_Death_domain,pfscan_Death_domain,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_21	-	no_errors	TNFRSF21	HGNC	ENSG00000146072	tier1	-	-	42	0	0.00	25	14	35.90
TRPA1	0	genome.wustl.edu	37	8	72969979	72969979	+	Missense_Mutation	SNP	T	T	G			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	72969979	72969979	T	G	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	missense	c.1066	p.N356H	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Ion_trans_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	TRPA1	HGNC	ENSG00000104321	tier1	-	-	112	0	0.00	57	12	17.39
TSHR	0	genome.wustl.edu	37	14	81610420	81610420	+	Missense_Mutation	SNP	C	C	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	14	81610420	81610420	C	A	SNP	TSHR	ENST00000298171	human	ensembl	74_37	+1	known	missense	c.2018	p.A673D	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_TSH_rcpt,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn,prints_FSH_rcpt,prints_LSH_rcpt	-	no_errors	TSHR	HGNC	ENSG00000165409	tier1	-	-	185	0	0.00	112	13	10.32
TXLNB	0	genome.wustl.edu	37	6	139609680	139609680	+	Silent	SNP	T	T	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	6	139609680	139609680	T	C	SNP	TXLNB	ENST00000358430	human	ensembl	74_37	-1	known	silent	c.357	p.P119	0.002	NULL	pfam_Taxilin_fam	-	no_errors	TXLNB	HGNC	ENSG00000164440	tier1	-	-	281	0	0.00	244	20	7.58
TXNDC16	0	genome.wustl.edu	37	14	52937269	52937269	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	14	52937269	52937269	C	T	SNP	TXNDC16	ENST00000281741	human	ensembl	74_37	-1	known	missense	c.1442	p.G481E	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TXNDC16	HGNC	ENSG00000087301	tier1	-	-	202	0	0.00	109	29	20.86
UBR5	0	genome.wustl.edu	37	8	103326078	103326078	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	8	103326078	103326078	C	T	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.1961	p.R654Q	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	tier1	-	-	157	0	0.00	86	16	15.69
USP28	0	genome.wustl.edu	37	11	113679074	113679074	+	Missense_Mutation	SNP	A	A	C			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	113679074	113679074	A	C	SNP	USP28	ENST00000003302	human	ensembl	74_37	-1	known	missense	c.2250	p.I750M	0.997	NULL	pfam_Peptidase_C19/C67,superfamily_UBA-like,pfscan_Peptidase_C19/C67	-	no_errors	USP28	HGNC	ENSG00000048028	tier1	-	-	217	0	0.00	134	34	20.12
WNT7A	0	genome.wustl.edu	37	3	13860467	13860467	+	Missense_Mutation	SNP	G	G	A			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	3	13860467	13860467	G	A	SNP	WNT7A	ENST00000285018	human	ensembl	74_37	-1	known	missense	c.1024	p.R342C	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt7	-	no_errors	WNT7A	HGNC	ENSG00000154764	tier1	-	-	58	0	0.00	24	6	20.00
XRRA1	0	genome.wustl.edu	37	11	74562162	74562162	+	Missense_Mutation	SNP	C	C	T			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	11	74562162	74562162	C	T	SNP	XRRA1	ENST00000340360	human	ensembl	74_37	-1	known	missense	c.1327	p.V443I	0.470	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	XRRA1	HGNC	ENSG00000166435	tier1	-	-	47	0	0.00	39	5	11.36
ZNF880	0	genome.wustl.edu	37	19	52877717	52877717	+	Frame_Shift_Del	DEL	T	T	-			TCGA-IN-AB1V-01A-21D-A410-08	TCGA-IN-AB1V-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e9d53789-cc98-4016-92e3-e752dc6cd891	de7daf62-f9a3-46c3-9ef1-4ffa1578268c	19	52877717	52877717	T	-	DEL	ZNF880	ENST00000597976	human	ensembl	74_37	+1	putative	frame_shift_del	c.305	p.F105fs	0.091	NULL	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	tier1			15	0	0.00	12	3	20.00
