Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA12	0	genome.wustl.edu	37	2	215917263	215917263	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	215917263	215917263	G	A	SNP	ABCA12	ENST00000272895	human	ensembl	74_37	-1	known	missense	c.455	p.T152I	0.823	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA12	HGNC	ENSG00000144452	tier1	-	-	66	0	0.00	70	8	10.26
AFP	0	genome.wustl.edu	37	4	74310820	74310820	+	Missense_Mutation	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	4	74310820	74310820	T	C	SNP	AFP	ENST00000395792	human	ensembl	74_37	+1	known	missense	c.824	p.L275P	0.859	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_ALB/AFP/VDB	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB	-	no_errors	AFP	HGNC	ENSG00000081051	tier1	-	-	127	0	0.00	89	42	32.06
APC	0	genome.wustl.edu	37	5	112174494	112174494	+	Nonsense_Mutation	SNP	C	C	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	5	112174494	112174494	C	A	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.3203	p.S1068*	0.982	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	tier1	-	-	49	0	0.00	35	8	18.60
ATG4C	0	genome.wustl.edu	37	1	63299737	63299737	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	63299737	63299737	G	A	SNP	ATG4C	ENST00000317868	human	ensembl	74_37	+1	known	missense	c.962	p.G321D	1.000	pfam_Peptidase_C54	pfam_Peptidase_C54	-	no_errors	ATG4C	HGNC	ENSG00000125703	tier1	-	-	70	0	0.00	90	8	8.16
BMP15	0	genome.wustl.edu	37	X	50653812	50653812	+	Frame_Shift_Del	DEL	T	T	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	X	50653812	50653812	T	-	DEL	BMP15	ENST00000252677	human	ensembl	74_37	+1	known	frame_shift_del	c.29	p.L12fs	0.097	NULL	pfam_TGF-b_C,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP15	HGNC	ENSG00000130385	tier1			31	0	0.00	26	2	7.14
C17orf77	0	genome.wustl.edu	37	17	72588699	72588699	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	17	72588699	72588699	G	A	SNP	C17orf77	ENST00000328023	human	ensembl	74_37	+1	known	missense	c.514	p.E172K	0.000	NULL	NULL	-	no_errors	C17orf77	HGNC	ENSG00000182352				28	0	0.00	25	3	10.71
CACNB2	0	genome.wustl.edu	37	10	18429702	18429704	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	10	18429702	18429704	GCG	-	DEL	CACNB2	ENST00000324631	human	ensembl	74_37	+1	known	in_frame_del	c.37_39	p.A16in_frame_del	0.717:0.951:0.991	NULL	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b2su	-	no_errors	CACNB2	HGNC	ENSG00000165995	tier1			8	0	0.00	4	2	33.33
CAT	0	genome.wustl.edu	37	11	34460605	34460607	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	11	34460605	34460607	GAA	-	DEL	CAT	ENST00000241052	human	ensembl	74_37	+1	known	in_frame_del	c.45_47	p.K16in_frame_del	1.000:1.000:1.000	superfamily_Catalase-like_dom	pfam_Catalase_core,pfam_Catalase_immune_responsive,superfamily_Catalase-like_dom,prints_Catalase	-	no_errors	CAT	HGNC	ENSG00000121691	tier1			22	0	0.00	6	2	25.00
CDC27	0	genome.wustl.edu	37	17	45234725	45234725	+	Silent	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	17	45234725	45234725	T	C	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	silent	c.501	p.T167	0.999	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	tier1	-	-	49	0	0.00	79	8	9.20
CES4A	0	genome.wustl.edu	37	16	67042915	67042917	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	16	67042915	67042917	ACA	0	DEL	CES4A	ENST00000326686	human	ensembl	74_37	+1	known	in_frame_del	c.1556_1558	p.N520in_frame_del	0.065:0.004:0.008	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES4A	HGNC	ENSG00000172824				118	0	0.00	163	15	8.43
CHD4	0	genome.wustl.edu	37	12	6707121	6707121	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	6707121	6707121	G	A	SNP	CHD4	ENST00000309577	human	ensembl	74_37	-1	known	missense	c.1831	p.R611C	1.000	superfamily_Chromodomain-like	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	tier1	-	-	153	0	0.00	179	12	6.28
CHD6	0	genome.wustl.edu	37	20	40126804	40126804	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	20	40126804	40126804	G	A	SNP	CHD6	ENST00000373222	human	ensembl	74_37	-1	known	silent	c.1083	p.Y361	1.000	NULL	NULL	-	no_errors	CHD6	HGNC	ENSG00000124177	tier1	-	-	52	0	0.00	70	7	9.09
CMKLR1	0	genome.wustl.edu	37	12	108686191	108686191	+	Silent	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	108686191	108686191	C	T	SNP	CMKLR1	ENST00000312143	human	ensembl	74_37	-1	known	silent	c.549	p.L183	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_DEZorph_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_DEZorph_rcpt,prints_GPCR_Rhodpsn,prints_Formyl_pep_rcpt,prints_Anphylx_rcpt,prints_ATII_rcpt	-	no_errors	CMKLR1	HGNC	ENSG00000174600	tier1	-	-	57	0	0.00	41	8	16.33
CMTM5	0	genome.wustl.edu	37	14	23847912	23847912	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	14	23847912	23847912	C	T	SNP	CMTM5	ENST00000339180	human	ensembl	74_37	+1	known	missense	c.314	p.P105L	0.003	NULL	NULL	-	no_errors	CMTM5	HGNC	ENSG00000166091	tier1	-	-	34	0	0.00	25	5	16.67
COL3A1	0	genome.wustl.edu	37	2	189859787	189859787	+	Nonsense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	189859787	189859787	C	T	SNP	COL3A1	ENST00000304636	human	ensembl	74_37	+1	known	nonsense	c.1471	p.R491*	1.000	pfam_Collagen	pfam_Collagen,pfam_Fib_collagen_C,pfam_VWF_C,superfamily_Fibrinogen_a/b/g_C_dom,smart_VWF_C,smart_Fib_collagen_C,pfscan_VWF_C	-	no_errors	COL3A1	HGNC	ENSG00000168542	tier1	-	-	70	0	0.00	66	9	12.00
COL4A2	0	genome.wustl.edu	37	13	111134925	111134925	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	13	111134925	111134925	G	A	SNP	COL4A2	ENST00000360467	human	ensembl	74_37	+1	known	missense	c.2821	p.G941R	0.520	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	tier1	-	-	144	0	0.00	136	37	21.39
CRELD2	0	genome.wustl.edu	37	22	50319112	50319112	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	22	50319112	50319112	G	A	SNP	CRELD2	ENST00000404488	human	ensembl	74_37	+1	known	missense	c.1063	p.E355K	0.841	pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_DUF3456,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_Furin_repeat,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	CRELD2	HGNC	ENSG00000184164	tier1	-	-	81	0	0.00	87	9	9.38
CWC15	0	genome.wustl.edu	37	11	94696474	94696475	+	RNA	INS	-	-	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	11	94696474	94696475	-	A	INS	CWC15	ENST00000545018	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CWC15	HGNC	ENSG00000150316	tier1			8	0	0.00	8	9	52.94
DCAF5	0	genome.wustl.edu	37	14	69558495	69558495	+	Missense_Mutation	SNP	G	G	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	14	69558495	69558495	G	C	SNP	DCAF5	ENST00000341516	human	ensembl	74_37	-1	known	missense	c.775	p.L259V	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF5	HGNC	ENSG00000139990	tier1	-	-	65	0	0.00	56	26	31.33
DLGAP4	0	genome.wustl.edu	37	20	35060206	35060206	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	20	35060206	35060206	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	74_37	+1	known	missense	c.86	p.R29H	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	tier1	-	-	60	0	0.00	70	8	10.26
DPY19L1	0	genome.wustl.edu	37	7	34979831	34979831	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	7	34979831	34979831	C	T	SNP	DPY19L1	ENST00000310974	human	ensembl	74_37	-1	known	missense	c.1579	p.V527I	1.000	pfam_Dpy-19	pfam_Dpy-19	-	no_errors	DPY19L1	HGNC	ENSG00000173852	tier1	-	-	40	0	0.00	49	9	15.52
EHMT2	0	genome.wustl.edu	37	6	31855598	31855598	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	6	31855598	31855598	C	T	SNP	EHMT2	ENST00000395728	human	ensembl	74_37	-1	known	missense	c.2057	p.R686Q	1.000	NULL	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT2	HGNC	ENSG00000204371	tier1	-	-	120	0	0.00	112	37	24.67
ERO1LB	0	genome.wustl.edu	37	1	236399100	236399100	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	236399100	236399100	G	A	SNP	ERO1LB	ENST00000354619	human	ensembl	74_37	-1	known	missense	c.662	p.A221V	1.000	pfam_Ero1,pirsf_Ero1	pfam_Ero1,pirsf_Ero1	-	no_errors	ERO1LB	HGNC	ENSG00000086619	tier1	-	-	69	0	0.00	63	8	11.27
FCRL5	0	genome.wustl.edu	37	1	157514151	157514151	+	Missense_Mutation	SNP	C	C	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	157514151	157514151	C	A	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	missense	c.745	p.A249S	0.000	smart_Ig_sub,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297	tier1	-	-	278	0	0.00	219	51	18.89
FLG	0	genome.wustl.edu	37	1	152284617	152284617	+	Silent	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	152284617	152284617	T	C	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	silent	c.2745	p.E915	0.000	pfam_Filaggrin,prints_Filaggrin	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	379	0	0.00	415	23	5.24
GH2	0	genome.wustl.edu	37	17	61958835	61958835	+	Missense_Mutation	SNP	A	A	G			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	17	61958835	61958835	A	G	SNP	GH2	ENST00000332800	human	ensembl	74_37	-1	known	missense	c.55	p.S19P	0.987	pfam_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	tier1	-	-	156	0	0.00	164	21	11.35
GIPC1	0	genome.wustl.edu	37	19	14593760	14593760	+	Frame_Shift_Del	DEL	T	T	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	19	14593760	14593760	T	-	DEL	GIPC1	ENST00000345425	human	ensembl	74_37	-1	known	frame_shift_del	c.29	p.K10fs	1.000	pirsf_UCP038083_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_UCP038083_PDZ,pfscan_PDZ	-	no_errors	GIPC1	HGNC	ENSG00000123159	tier1			28	0	0.00	36	3	7.69
HIST1H2BG	0	genome.wustl.edu	37	6	26216847	26216847	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	6	26216847	26216847	G	A	SNP	HIST1H2BG	ENST00000244601	human	ensembl	74_37	-1	known	missense	c.25	p.P9S	0.997	superfamily_Histone-fold	pfam_Histone_core_D,pfam_CBFA_NFYB_domain,superfamily_Histone-fold,smart_Histone_H2B,prints_Histone_H2B	-	no_errors	HIST1H2BG	HGNC	ENSG00000187990	tier1	rs149681157	-	108	0	0.00	101	15	12.93
HPR	0	genome.wustl.edu	37	16	72107693	72107694	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	16	72107693	72107694	GT	-	DEL	HPR	ENST00000228226	human	ensembl	74_37	+1	known	frame_shift_del	c.19_20	p.C10fs	0.010:0.011	NULL	pirsf_Haptoglobin,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,superfamily_Sushi_SCR_CCP,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Peptidase_S1	-	no_errors	HPR	HGNC	ENSG00000261701	tier1			27	0	0.00	29	5	14.71
ITPR3	0	genome.wustl.edu	37	6	33653466	33653466	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	6	33653466	33653466	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	74_37	+1	known	silent	c.5529	p.S1843	0.085	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ARM-type_fold,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR3	HGNC	ENSG00000096433	tier1	-	-	77	0	0.00	48	20	28.99
KIF17	0	genome.wustl.edu	37	1	21031011	21031011	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	21031011	21031011	C	T	SNP	KIF17	ENST00000247986	human	ensembl	74_37	-1	known	missense	c.1052	p.R351H	1.000	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF17	HGNC	ENSG00000117245	tier1	-	-	41	0	0.00	30	5	14.29
L1CAM	0	genome.wustl.edu	37	X	153135928	153135928	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	X	153135928	153135928	G	A	SNP	L1CAM	ENST00000543994	human	ensembl	74_37	-1	known	missense	c.727	p.R243C	0.086	pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	L1CAM	HGNC	ENSG00000198910	tier1	rs201642622	-	37	0	0.00	38	9	19.15
LAMA1	0	genome.wustl.edu	37	18	6948410	6948410	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	18	6948410	6948410	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.8702	p.A2901V	0.999	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	56	0	0.00	32	4	11.11
LAMA1	0	genome.wustl.edu	37	18	6986280	6986280	+	Silent	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	18	6986280	6986280	T	C	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.5235	p.V1745	0.000	pfam_Laminin_I	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	95	0	0.00	78	17	17.89
LOC100293748	0	genome.wustl.edu	37	1	149261391	149261391	+	RNA	SNP	C	C	G			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	149261391	149261391	C	G	SNP	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779	tier1	rs138932924	-	35	0	0.00	33	4	10.81
MARCH7	0	genome.wustl.edu	37	2	160585644	160585644	+	Silent	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	160585644	160585644	T	C	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	silent	c.111	p.Y37	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	tier1	-	-	56	0	0.00	56	7	11.11
METAP1D	0	genome.wustl.edu	37	2	172935731	172935731	+	Missense_Mutation	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	172935731	172935731	T	C	SNP	METAP1D	ENST00000315796	human	ensembl	74_37	+1	known	missense	c.637	p.C213R	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pept_M24A_MAP1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,prints_Pept_M24_MAP,tigrfam_Pept_M24A_MAP1	-	no_errors	METAP1D	HGNC	ENSG00000172878	tier1	-	-	60	0	0.00	67	20	22.99
MMP16	0	genome.wustl.edu	37	8	89053958	89053958	+	Missense_Mutation	SNP	G	G	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	8	89053958	89053958	G	T	SNP	MMP16	ENST00000286614	human	ensembl	74_37	-1	known	missense	c.1555	p.P519T	1.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP16	HGNC	ENSG00000156103	tier1	-	-	61	0	0.00	99	8	7.48
MSL3P1	0	genome.wustl.edu	37	2	234775853	234775853	+	RNA	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	234775853	234775853	T	C	SNP	MSL3P1	ENST00000438684	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MSL3P1	HGNC	ENSG00000224287	tier1	-	-	38	0	0.00	35	16	31.37
MUC16	0	genome.wustl.edu	37	19	9075142	9075142	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	19	9075142	9075142	C	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.12304	p.A4102T	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	66	0	0.00	38	11	22.45
NCAPD2	0	genome.wustl.edu	37	12	6636067	6636067	+	Silent	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	6636067	6636067	C	T	SNP	NCAPD2	ENST00000315579	human	ensembl	74_37	+1	known	silent	c.2745	p.P915	0.000	superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_Condensin_cplx_su1	-	no_errors	NCAPD2	HGNC	ENSG00000010292	tier1	-	-	74	0	0.00	60	27	31.03
NCOR2	0	genome.wustl.edu	37	12	124817778	124817778	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	124817778	124817778	C	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.6674	p.G2225D	0.124	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1	-	-	43	0	0.00	25	6	19.35
NEK10	0	genome.wustl.edu	37	3	27161337	27161337	+	Missense_Mutation	SNP	G	G	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	3	27161337	27161337	G	T	SNP	NEK10	ENST00000383771	human	ensembl	74_37	-1	known	missense	c.1181	p.P394Q	0.705	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,pfscan_Prot_kinase_dom	-	no_errors	NEK10	HGNC	ENSG00000163491	tier1	-	-	42	0	0.00	36	23	38.98
OSBPL11	0	genome.wustl.edu	37	3	125266373	125266373	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	3	125266373	125266373	C	T	SNP	OSBPL11	ENST00000296220	human	ensembl	74_37	-1	known	missense	c.1718	p.R573Q	1.000	pfam_Oxysterol-bd	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	tier1	-	-	72	0	0.00	61	14	18.42
PCDHB7	0	genome.wustl.edu	37	5	140554382	140554382	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	5	140554382	140554382	G	A	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1966	p.A656T	0.039	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	tier1	-	-	69	0	0.00	49	23	31.94
PCSK7	0	genome.wustl.edu	37	11	117079626	117079626	+	Missense_Mutation	SNP	G	G	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	11	117079626	117079626	G	C	SNP	PCSK7	ENST00000320934	human	ensembl	74_37	-1	known	missense	c.1678	p.R560G	1.000	pfam_PrprotnconvertsP,superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53_dom,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53_dom,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK7	HGNC	ENSG00000160613				30	0	0.00	24	6	20.00
PIK3CG	0	genome.wustl.edu	37	7	106508793	106508793	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	7	106508793	106508793	G	A	SNP	PIK3CG	ENST00000359195	human	ensembl	74_37	+1	known	missense	c.787	p.E263K	0.996	pfam_PI3K_Ras-bd_dom,smart_PI3K_Ras-bd_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_C2_dom,pfam_PI3K_Ras-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CG	HGNC	ENSG00000105851	tier1	-	-	53	0	0.00	49	14	22.22
PLXNA2	0	genome.wustl.edu	37	1	208266215	208266215	+	Silent	SNP	G	G	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	208266215	208266215	G	T	SNP	PLXNA2	ENST00000367033	human	ensembl	74_37	-1	known	silent	c.2013	p.R671	1.000	pfam_Plexin_repeat,superfamily_Plexin-like_fold,smart_Plexin-like_fold	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semap_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	48	0	0.00	40	5	11.11
POU3F4	0	genome.wustl.edu	37	X	82763692	82763692	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	X	82763692	82763692	G	A	SNP	POU3F4	ENST00000373200	human	ensembl	74_37	+1	known	silent	c.360	p.P120	0.526	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F4	HGNC	ENSG00000196767	tier1	-	-	25	0	0.00	23	6	20.69
PTPRU	0	genome.wustl.edu	37	1	29642649	29642649	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	29642649	29642649	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	74_37	+1	known	missense	c.3529	p.R1177W	0.994	smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRU	HGNC	ENSG00000060656	tier1	-	-	26	0	0.00	37	8	17.78
RANBP2	0	genome.wustl.edu	37	2	109384039	109384039	+	Silent	SNP	A	A	G			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	109384039	109384039	A	G	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.7044	p.Q2348	0.990	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	tier1	-	-	410	0	0.00	428	68	13.65
SALL1	0	genome.wustl.edu	37	16	51171070	51171070	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	16	51171070	51171070	G	A	SNP	SALL1	ENST00000251020	human	ensembl	74_37	-1	known	missense	c.3928	p.R1310C	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1	-	-	51	0	0.00	45	12	21.05
SDHA	0	genome.wustl.edu	37	5	236696	236696	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	5	236696	236696	G	A	SNP	SDHA	ENST00000264932	human	ensembl	74_37	+1	known	missense	c.1414	p.E472K	0.998	tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	pfam_FAD_bind_dom,pfam_Fum_Rdtase/Succ_DH_flav-like_C,superfamily_Succ_DH/fumarate_Rdtase_cat,superfamily_Fum_Rdtase/Succ_DH_flav-like_C,tigrfam_Succ_DH_flav_su_fwd,tigrfam_Succ_Dhase_FrdA_Gneg	-	no_errors	SDHA	HGNC	ENSG00000073578	tier1	rs143798161	-	50	0	0.00	57	8	12.31
SEMA5A	0	genome.wustl.edu	37	5	9238004	9238004	+	Splice_Site	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	5	9238004	9238004	T	C	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	splice_site	c.271-2	e4-2	0.969	-	-	-	no_errors	SEMA5A	HGNC	ENSG00000112902	tier1	-	-	69	0	0.00	70	6	7.89
SEPN1	0	genome.wustl.edu	37	1	26131721	26131721	+	Silent	SNP	T	T	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	26131721	26131721	T	C	SNP	SEPN1	ENST00000354177	human	ensembl	74_37	+1	known	silent	c.390	p.P130	1.000	NULL	pfscan_EF_hand_dom	-	no_errors	SEPN1	HGNC	ENSG00000162430	tier1	-	-	48	0	0.00	64	10	13.51
SLAMF6	0	genome.wustl.edu	37	1	160466140	160466140	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	160466140	160466140	G	A	SNP	SLAMF6	ENST00000368057	human	ensembl	74_37	-1	known	silent	c.93	p.N31	0.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SLAMF6	HGNC	ENSG00000162739	tier1	-	-	213	0	0.00	202	37	15.48
SLITRK2	0	genome.wustl.edu	37	X	144905139	144905139	+	Missense_Mutation	SNP	G	G	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	X	144905139	144905139	G	C	SNP	SLITRK2	ENST00000370490	human	ensembl	74_37	+1	known	missense	c.1196	p.S399T	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK2	HGNC	ENSG00000185985	tier1	-	-	168	0	0.00	179	27	13.11
SMAD4	0	genome.wustl.edu	37	18	48575202	48575202	+	Missense_Mutation	SNP	C	C	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	18	48575202	48575202	C	A	SNP	SMAD4	ENST00000342988	human	ensembl	74_37	+1	known	missense	c.396	p.H132Q	1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD4	HGNC	ENSG00000141646	tier1	-	-	67	0	0.00	50	5	9.09
SMARCC2	0	genome.wustl.edu	37	12	56578895	56578895	+	Nonsense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	56578895	56578895	C	T	SNP	SMARCC2	ENST00000267064	human	ensembl	74_37	-1	known	nonsense	c.318	p.W106*	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC2	HGNC	ENSG00000139613	tier1	-	-	113	0	0.00	122	11	8.21
SPARC	0	genome.wustl.edu	37	5	151047130	151047130	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	5	151047130	151047130	G	A	SNP	SPARC	ENST00000231061	human	ensembl	74_37	-1	known	silent	c.483	p.T161	0.022	pfam_SPARC/Testican_Ca-bd-dom	pfam_SPARC/Testican_Ca-bd-dom,pfam_Follistatin/Osteonectin_EGF,pfam_Kazal_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	SPARC	HGNC	ENSG00000113140	tier1	-	-	47	0	0.00	28	16	36.36
TBC1D15	0	genome.wustl.edu	37	12	72289743	72289743	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	12	72289743	72289743	G	A	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	missense	c.923	p.R308H	1.000	NULL	pfam_DUF3548,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D15	HGNC	ENSG00000121749	tier1	-	-	69	0	0.00	78	15	16.13
TMEM126B	0	genome.wustl.edu	37	11	85345129	85345129	+	Splice_Site	SNP	G	G	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	11	85345129	85345129	G	T	SNP	TMEM126B	ENST00000358867	human	ensembl	74_37	+1	known	splice_site	c.204-1	e3-1	0.555	-	-	-	no_errors	TMEM126B	HGNC	ENSG00000171204				55	0	0.00	74	6	7.50
TP53	0	genome.wustl.edu	37	17	7578257	7578257	+	Nonsense_Mutation	SNP	C	C	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	17	7578257	7578257	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.592	p.E198*	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	47	0	0.00	36	15	29.41
TPTE	0	genome.wustl.edu	37	21	10906911	10906911	+	Silent	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	21	10906911	10906911	G	A	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	silent	c.1650	p.S550	0.001	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	tier1	-	-	70	0	0.00	74	6	7.50
TROVE2	0	genome.wustl.edu	37	1	193045046	193045046	+	Nonsense_Mutation	SNP	T	T	G			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	1	193045046	193045046	T	G	SNP	TROVE2	ENST00000367441	human	ensembl	74_37	+1	known	nonsense	c.677	p.L226*	0.994	pfam_TROVE,pfscan_TROVE	pfam_TROVE,pfscan_TROVE	-	no_errors	TROVE2	HGNC	ENSG00000116747	tier1	-	-	86	0	0.00	92	6	6.12
TTC17	0	genome.wustl.edu	37	11	43423097	43423097	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	11	43423097	43423097	G	A	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	missense	c.1321	p.D441N	1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC17	HGNC	ENSG00000052841				27	0	0.00	27	3	10.00
UNC5D	0	genome.wustl.edu	37	8	35425694	35425694	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	8	35425694	35425694	G	A	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	missense	c.401	p.C134Y	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687	tier1	-	-	160	0	0.00	165	11	6.25
VARS2	0	genome.wustl.edu	37	6	30892235	30892235	+	Missense_Mutation	SNP	G	G	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	6	30892235	30892235	G	A	SNP	VARS2	ENST00000541562	human	ensembl	74_37	+1	known	missense	c.2661	p.M887I	1.000	pfam_V/L/I-tRNA-synth_anticodon-bd,superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Valyl-tRNA_ligase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Valyl-tRNA_ligase,tigrfam_Valyl-tRNA_ligase	-	no_errors	VARS2	HGNC	ENSG00000137411	tier1	-	-	36	0	0.00	25	6	19.35
WBP1	0	genome.wustl.edu	37	2	74687542	74687543	+	Frame_Shift_Ins	INS	-	-	C			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	2	74687542	74687543	0	C	INS	WBP1	ENST00000233615	human	ensembl	74_37	+1	known	frame_shift_ins	c.544_545	p.H185fs	0.963:0.962	NULL	pfam_Uncharacterised_WW-bd	-	no_errors	WBP1	HGNC	ENSG00000239779				133	0	0.00	154	15	8.88
ZIC2	0	genome.wustl.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	CCA	-			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	CCA	CCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	13	100635008	100635010	CCA	-	DEL	ZIC2	ENST00000376335	human	ensembl	74_37	+1	known	in_frame_del	c.690_692	p.H234in_frame_del	0.990:0.999:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZIC2	HGNC	ENSG00000043355	tier1			48	0	0.00	51	6	10.53
ZNF154	0	genome.wustl.edu	37	19	58213199	58213199	+	Missense_Mutation	SNP	C	C	T			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	19	58213199	58213199	C	T	SNP	ZNF154	ENST00000426889	human	ensembl	74_37	-1	known	missense	c.1118	p.R373Q	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF154	HGNC	ENSG00000179909	tier1	-	-	81	0	0.00	91	14	13.33
ZNF835	0	genome.wustl.edu	37	19	57176297	57176297	+	Silent	SNP	C	C	A			TCGA-R5-A7ZF-01A-11D-A34U-08	TCGA-R5-A7ZF-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a3b78fb8-5846-47d8-8cc8-af07207fe597	aa77f083-a266-4850-9782-bf32c8230dff	19	57176297	57176297	C	A	SNP	ZNF835	ENST00000537055	human	ensembl	74_37	-1	known	silent	c.270	p.P90	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF835	HGNC	ENSG00000127903	tier1	-	-	58	0	0.00	47	8	14.55
