Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ADAMTS2	0	genome.wustl.edu	37	5	178700027	178700027	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	178700027	178700027	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.573	p.I191	0.438	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116	tier1	-	-	211	0	0.00	120	25	17.24
ADAMTS5	0	genome.wustl.edu	37	21	28306884	28306884	+	Silent	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	21	28306884	28306884	C	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.1590	p.L530	0.967	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	tier1	-	-	138	0	0.00	98	6	5.77
ALAS2	0	genome.wustl.edu	37	X	55052357	55052357	+	Missense_Mutation	SNP	A	A	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	55052357	55052357	A	C	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.77	p.V26G	0.023	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	tier1	-	-	43	0	0.00	31	9	22.50
ALS2CR11	0	genome.wustl.edu	37	2	202483773	202483773	+	Silent	SNP	G	G	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	202483773	202483773	G	C	SNP	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	silent	c.81	p.T27	0.000	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754	tier1	-	-	183	0	0.00	197	24	10.86
ARMC2	0	genome.wustl.edu	37	6	109274249	109274249	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	109274249	109274249	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.1610	p.R537H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690	tier1	-	-	24	0	0.00	20	5	20.00
C20orf194	0	genome.wustl.edu	37	20	3276519	3276519	+	RNA	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276519	3276519	C	T	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	50	0	0.00	51	6	10.53
C20orf194	0	genome.wustl.edu	37	20	3276520	3276520	+	RNA	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276520	3276520	A	G	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	50	0	0.00	49	6	10.91
C20orf194	0	genome.wustl.edu	37	20	3276540	3276540	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276540	3276540	G	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	55	0	0.00	52	10	16.13
C20orf194	0	genome.wustl.edu	37	20	3276560	3276560	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276560	3276560	G	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.044	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	67	0	0.00	50	8	13.79
C20orf194	0	genome.wustl.edu	37	20	3276709	3276709	+	RNA	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276709	3276709	A	G	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	123	0	0.00	129	7	5.15
C20orf194	0	genome.wustl.edu	37	20	3276725	3276725	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276725	3276725	G	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	113	0	0.00	132	8	5.71
C20orf194	0	genome.wustl.edu	37	20	3276730	3276730	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	3276730	3276730	G	A	SNP	C20orf194	ENST00000498079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	C20orf194	HGNC	ENSG00000088854	tier1	-	-	111	0	0.00	131	8	5.76
C2CD3	0	genome.wustl.edu	37	11	73849766	73849766	+	Silent	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	73849766	73849766	T	C	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	silent	c.954	p.S318	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014	tier1	-	-	162	0	0.00	134	32	19.16
CFTR	0	genome.wustl.edu	37	7	117180375	117180375	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	117180375	117180375	C	G	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.1091	p.S364C	1.000	superfamily_ABC1_TM_dom,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	tier1	-	-	146	0	0.00	147	17	10.37
CHRNB3	0	genome.wustl.edu	37	8	42587096	42587096	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	42587096	42587096	G	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.646	p.G216S	0.993	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432	tier1	-	-	171	0	0.00	136	8	5.56
COL5A1	0	genome.wustl.edu	37	9	137582873	137582873	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	137582873	137582873	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.225	p.Y75	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	tier1	-	-	222	0	0.00	146	13	8.12
DOCK7	0	genome.wustl.edu	37	1	62976306	62976306	+	Missense_Mutation	SNP	T	T	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	62976306	62976306	T	G	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.4294	p.N1432H	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1	-	-	153	0	0.00	121	19	13.57
DYNC1I2	0	genome.wustl.edu	37	2	172585298	172585298	+	Silent	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	172585298	172585298	T	C	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	silent	c.1329	p.D443	0.997	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380				28	0	0.00	31	4	11.43
EIF2S3	0	genome.wustl.edu	37	X	24086195	24086195	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	24086195	24086195	C	T	SNP	EIF2S3	ENST00000253039	human	ensembl	74_37	+1	known	silent	c.982	p.L328	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3	HGNC	ENSG00000130741				77	0	0.00	60	5	7.69
ENSG00000225792	0	genome.wustl.edu	37	7	26411779	26411782	+	RNA	DEL	AATT	AATT	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	AATT	AATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	26411779	26411782	AATT	-	DEL	ENSG00000225792	ENST00000451368	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	-	no_errors	AC004540.4	Clone_based_vega_gene	ENSG00000225792	tier1			9	0	0.00	3	6	66.67
ENSG00000230850	0	genome.wustl.edu	37	1	143157248	143157248	+	RNA	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	143157248	143157248	T	C	SNP	ENSG00000230850	ENST00000454861	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-782C8.1	Clone_based_vega_gene	ENSG00000230850	tier1	rs79218245	-	15	0	0.00	12	4	25.00
ENSG00000254506	0	genome.wustl.edu	37	11	101465176	101465176	+	RNA	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	101465176	101465176	C	T	SNP	ENSG00000254506	ENST00000527374	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-748H22.1	Clone_based_vega_gene	ENSG00000254506	tier1	-	-	68	0	0.00	74	16	17.78
ENSG00000258654	0	genome.wustl.edu	37	15	20554706	20554706	+	Splice_Site	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	15	20554706	20554706	T	C	SNP	ENSG00000258654	ENST00000554815	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.015	-	-	-	no_errors	RP11-509A17.3	Clone_based_vega_gene	ENSG00000258654	tier1	rs2133835	-	12	0	0.00	4	4	50.00
ENSG00000259827	0	genome.wustl.edu	37	16	56716405	56716405	+	RNA	SNP	T	T	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	16	56716405	56716405	T	A	SNP	ENSG00000259827	ENST00000567563	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-343H19.2	Clone_based_vega_gene	ENSG00000259827	tier1	-	-	217	0	0.00	157	37	19.07
EPHA7	0	genome.wustl.edu	37	6	93979255	93979255	+	Missense_Mutation	SNP	T	T	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	93979255	93979255	T	G	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.1573	p.N525H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	tier1	-	-	145	0	0.00	140	38	21.35
FAM47C	0	genome.wustl.edu	37	X	37026574	37026574	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	37026574	37026574	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.91	p.A31T	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	50	0	0.00	33	15	31.25
FLRT3	0	genome.wustl.edu	37	20	14306243	14306243	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	14306243	14306243	C	A	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.1910	p.R637I	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848	tier1	-	-	196	0	0.00	184	23	11.06
FOLR2	0	genome.wustl.edu	37	11	71932037	71932037	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	71932037	71932037	C	T	SNP	FOLR2	ENST00000298223	human	ensembl	74_37	+1	known	missense	c.274	p.R92C	0.989	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457	tier1	-	-	79	0	0.00	70	7	9.09
GLG1	0	genome.wustl.edu	37	16	74640647	74640647	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	16	74640647	74640647	C	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.346	p.E116K	1.000	NULL	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863	tier1	-	-	67	0	0.00	69	16	18.82
GPM6B	0	genome.wustl.edu	37	X	13803803	13803803	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	13803803	13803803	G	A	SNP	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	silent	c.306	p.T102	0.312	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653	tier1	-	-	50	0	0.00	48	12	20.00
HEATR5B	0	genome.wustl.edu	37	2	37215971	37215971	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	37215971	37215971	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.5729	p.S1910L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	tier1	-	-	100	0	0.00	123	9	6.82
HOXD11	0	genome.wustl.edu	37	2	176972310	176972312	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	176972310	176972312	GCG	-	DEL	HOXD11	ENST00000249504	human	ensembl	74_37	+1	known	in_frame_del	c.227_229	p.G80in_frame_del	1.000:0.995:1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXD11	HGNC	ENSG00000128713	tier1			34	0	0.00	20	3	13.04
KCNG1	0	genome.wustl.edu	37	20	49620847	49620847	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	49620847	49620847	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.1271	p.T424M	0.998	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559	tier1	-	-	206	0	0.00	135	21	13.46
KCNIP3	0	genome.wustl.edu	37	2	96049917	96049918	+	RNA	INS	-	-	AC			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	96049917	96049918	-	AC	INS	KCNIP3	ENST00000377181	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.979:0.000	-	-	-	no_errors	KCNIP3	HGNC	ENSG00000115041	tier1			16	0	0.00	16	4	20.00
KCTD1	0	genome.wustl.edu	37	18	24128325	24128327	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	18	24128325	24128327	TCC	-	DEL	KCTD1	ENST00000417602	human	ensembl	74_37	-1	known	in_frame_del	c.176_174	p.E62in_frame_del	1.000:1.000:0.999	NULL	pfam_DUF3504,pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD1	HGNC	ENSG00000134504	tier1			10	0	0.00	4	2	33.33
KIAA1161	0	genome.wustl.edu	37	9	34371925	34371925	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	34371925	34371925	C	T	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	silent	c.915	p.Q305	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976	tier1	-	-	134	0	0.00	132	8	5.71
LOC100996870	0	genome.wustl.edu	37	9	66468909	66468909	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	66468909	66468909	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.065	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1	rs78672302	-	25	0	0.00	12	4	25.00
LOC101927806	0	genome.wustl.edu	37	1	17197929	17197929	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	17197929	17197929	G	A	SNP	LOC101927806	ENST00000438002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.838	-	-	-	no_errors	U1	RFAM	ENSG00000228549	tier1	-	-	10	0	0.00	9	6	40.00
LOC728715	0	genome.wustl.edu	37	12	9713438	9713438	+	RNA	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	12	9713438	9713438	T	C	SNP	LOC728715	ENST00000520314	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.874	-	-	-	no_errors	RP11-726G1.1	Clone_based_vega_gene	ENSG00000214776	tier1	rs76076453	-	13	0	0.00	13	6	31.58
LRCH4	0	genome.wustl.edu	37	7	100174731	100174731	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	100174731	100174731	C	T	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.1342	p.V448M	0.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454	tier1	-	-	101	0	0.00	103	6	5.50
LRP1B	0	genome.wustl.edu	37	2	141771219	141771219	+	Frame_Shift_Del	DEL	A	A	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	141771219	141771219	A	0	DEL	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	frame_shift_del	c.2286	p.Q763fs	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702				141	0	0.00	115	8	6.50
LYPD2	0	genome.wustl.edu	37	8	143831773	143831773	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	143831773	143831773	G	A	SNP	LYPD2	ENST00000359228	human	ensembl	74_37	-1	known	silent	c.306	p.D102	0.420	smart_LY6_UPA_recep-like	pfam_LY6_UPAR,smart_LY6_UPA_recep-like	-	no_errors	LYPD2	HGNC	ENSG00000197353	tier1	rs138954713	-	8	0	0.00	5	6	54.55
MAP1B	0	genome.wustl.edu	37	5	71493747	71493747	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	71493747	71493747	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.4565	p.S1522F	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	148	0	0.00	128	8	5.88
MAP2K7	0	genome.wustl.edu	37	19	7976134	7976134	+	Splice_Site	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	7976134	7976134	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	splice_site	c.982-1	e8-1	1.000	-	-	-	no_errors	MAP2K7	HGNC	ENSG00000076984	tier1	-	-	101	0	0.00	75	25	25.00
MEG3	0	genome.wustl.edu	37	14	101324974	101324974	+	RNA	DEL	T	T	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	14	101324974	101324974	T	-	DEL	MEG3	ENST00000398460	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	MEG3	HGNC	ENSG00000214548	tier1			11	0	0.00	2	2	50.00
MSL3	0	genome.wustl.edu	37	X	11783877	11783877	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	11783877	11783877	G	A	SNP	MSL3	ENST00000337339	human	ensembl	74_37	+1	known	silent	c.1200	p.P400	0.000	NULL	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	tier1	rs147621824	-	120	0	0.00	122	18	12.86
NBAS	0	genome.wustl.edu	37	2	15359018	15359018	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	15359018	15359018	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.6311	p.R2104Q	0.994	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	tier1	-	-	123	0	0.00	88	31	26.05
NID1	0	genome.wustl.edu	37	1	236195854	236195854	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	236195854	236195854	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.1384	p.V462I	1.000	pfam_G2_nidogen/fibulin_G2F,superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	tier1	rs111733802	-	107	0	0.00	106	10	8.62
NLRP9	0	genome.wustl.edu	37	19	56235423	56235423	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	56235423	56235423	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	silent	c.2082	p.G694	0.001	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	tier1	-	-	93	0	0.00	78	49	38.28
NRAP	0	genome.wustl.edu	37	10	115356937	115356937	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	10	115356937	115356937	A	G	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.4363	p.Y1455H	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893	tier1	-	-	124	0	0.00	90	21	18.75
NT5C1B	0	genome.wustl.edu	37	2	18766073	18766073	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	18766073	18766073	G	A	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.610	p.R204W	0.610	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013	tier1	-	-	61	0	0.00	60	6	9.09
NT5C3A	0	genome.wustl.edu	37	7	33102236	33102236	+	Nonsense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	33102236	33102236	G	A	SNP	NT5C3A	ENST00000242210	human	ensembl	74_37	-1	known	nonsense	c.97	p.Q33*	1.000	NULL	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3A	HGNC	ENSG00000122643	tier1	-	-	39	0	0.00	35	4	10.26
OBSCN	0	genome.wustl.edu	37	1	228525644	228525644	+	Splice_Site	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	228525644	228525644	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	splice_site	c.16801-1	e66-1	1.000	-	-	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	33	0	0.00	27	4	12.90
OR5H14	0	genome.wustl.edu	37	3	97869007	97869007	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	3	97869007	97869007	A	G	SNP	OR5H14	ENST00000437310	human	ensembl	74_37	+1	known	missense	c.778	p.M260V	0.062	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H14	HGNC	ENSG00000236032				83	0	0.00	81	7	7.95
PCDH19	0	genome.wustl.edu	37	X	99661593	99661593	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	99661593	99661593	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.2003	p.A668V	1.000	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	tier1	-	-	43	0	0.00	28	6	17.14
PCDHA6	0	genome.wustl.edu	37	5	140209734	140209734	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	140209734	140209734	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.2058	p.A686	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	189	0	0.00	169	38	18.27
PNPLA7	0	genome.wustl.edu	37	9	140357910	140357910	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	140357910	140357910	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	silent	c.3300	p.D1100	0.947	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	tier1	-	-	22	0	0.00	21	7	25.00
PTP4A3	0	genome.wustl.edu	37	8	142437149	142437149	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	142437149	142437149	C	T	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	silent	c.309	p.H103	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489	tier1	-	-	286	0	0.00	189	35	15.56
RASA1	0	genome.wustl.edu	37	5	86672269	86672269	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	86672269	86672269	C	G	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.2071	p.L691V	1.000	superfamily_C2_dom	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715	tier1	-	-	80	0	0.00	73	16	17.98
RGPD3	0	genome.wustl.edu	37	2	107041296	107041296	+	Missense_Mutation	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	107041296	107041296	G	T	SNP	RGPD3	ENST00000304514	human	ensembl	74_37	-1	known	missense	c.3127	p.Q1043K	1.000	smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	tier1	-	-	254	0	0.00	263	45	14.61
RNF20	0	genome.wustl.edu	37	9	104314699	104314699	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	104314699	104314699	C	T	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.1565	p.S522F	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827	tier1	-	-	398	0	0.00	340	72	17.43
RPRM	0	genome.wustl.edu	37	2	154334935	154334935	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	154334935	154334935	G	A	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	missense	c.145	p.R49C	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519	tier1	-	-	97	0	0.00	98	11	10.09
RPS8	0	genome.wustl.edu	37	1	45243634	45243634	+	RNA	SNP	T	T	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	45243634	45243634	T	G	SNP	RPS8	ENST00000474582	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPS8	HGNC	ENSG00000142937	tier1	-	-	68	0	0.00	73	6	7.59
SCUBE2	0	genome.wustl.edu	37	11	9096029	9096029	+	Silent	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	9096029	9096029	T	C	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	silent	c.516	p.E172	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356	tier1	-	-	160	0	0.00	144	23	13.77
SEMG2	0	genome.wustl.edu	37	20	43851369	43851369	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	43851369	43851369	C	A	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.1096	p.Q366K	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157	tier1	-	-	118	0	0.00	114	34	22.97
SI	0	genome.wustl.edu	37	3	164786515	164786515	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	3	164786515	164786515	A	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.478	p.F160L	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402	tier1	-	-	169	0	0.00	163	54	24.88
SLC36A3	0	genome.wustl.edu	37	5	150682788	150682788	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	150682788	150682788	G	A	SNP	SLC36A3	ENST00000377713	human	ensembl	74_37	-1	known	missense	c.128	p.S43L	0.675	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A3	HGNC	ENSG00000186334	tier1	-	-	59	0	0.00	53	14	20.90
SLFN12	0	genome.wustl.edu	37	17	33738912	33738912	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	33738912	33738912	G	A	SNP	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	silent	c.1182	p.N394	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123	tier1	-	-	195	0	0.00	229	36	13.58
SRD5A1	0	genome.wustl.edu	37	5	6652021	6652021	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	6652021	6652021	G	A	SNP	SRD5A1	ENST00000274192	human	ensembl	74_37	+1	known	silent	c.360	p.A120	0.018	pfam_3-oxo-5_a-steroid_4-DH_C,pirsf_3-oxo-5-alpha-steroid_4-DH	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545	tier1	rs142854865	-	179	0	0.00	138	11	7.38
SYBU	0	genome.wustl.edu	37	8	110592047	110592047	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	110592047	110592047	C	T	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.715	p.D239N	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	tier1	-	-	220	0	0.00	194	37	15.95
TBC1D3P5	0	genome.wustl.edu	37	17	25748082	25748082	+	RNA	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	25748082	25748082	G	T	SNP	TBC1D3P5	ENST00000581469	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433	tier1	-	-	20	0	0.00	17	4	19.05
TGFBR1	0	genome.wustl.edu	37	9	101891170	101891170	+	Missense_Mutation	SNP	A	A	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	101891170	101891170	A	T	SNP	TGFBR1	ENST00000374994	human	ensembl	74_37	+1	known	missense	c.131	p.D44V	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	tier1	-	-	149	0	0.00	134	21	13.55
TMEM168	0	genome.wustl.edu	37	7	112412891	112412891	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	112412891	112412891	C	T	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	silent	c.1491	p.T497	0.004	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802	tier1	rs141029094	-	114	0	0.00	121	8	6.20
TNFRSF13B	0	genome.wustl.edu	37	17	16852054	16852054	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	16852054	16852054	G	A	SNP	TNFRSF13B	ENST00000261652	human	ensembl	74_37	-1	known	missense	c.443	p.P148L	0.975	NULL	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505	tier1	rs200173159	-	207	0	0.00	143	30	17.34
TRIM31	0	genome.wustl.edu	37	6	30073011	30073011	+	Nonsense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	30073011	30073011	G	A	SNP	TRIM31	ENST00000376734	human	ensembl	74_37	-1	known	nonsense	c.892	p.Q298*	0.001	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,prints_Znf_B-box_chordata,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM31	HGNC	ENSG00000204616	tier1	-	-	117	0	0.00	110	11	9.09
ZFHX3	0	genome.wustl.edu	37	16	72984716	72984716	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	16	72984716	72984716	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.2868	p.D956	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	tier1	-	-	112	0	0.00	85	30	26.09
ZNF467	0	genome.wustl.edu	37	7	149462920	149462920	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	149462920	149462920	C	T	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	tier1	-	-	33	0	0.00	37	8	17.39
ZNF71	0	genome.wustl.edu	37	19	57133786	57133786	+	Silent	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	57133786	57133786	C	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.1131	p.T377	0.018	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951	tier1	-	-	188	0	0.00	208	20	8.77
OBSCN	0	genome.wustl.edu	37	1	228525644	228525644	+	Splice_Site	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	228525644	228525644	G	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	splice_site	c.16801-1	e66-1	1.000	-	-	-	no_errors	OBSCN	HGNC	ENSG00000154358				29	0	0	25	4	13.7931
NID1	0	genome.wustl.edu	37	1	236195854	236195854	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	236195854	236195854	C	T	SNP	NID1	ENST00000264187	human	ensembl	74_37	-1	known	missense	c.1384	p.V462I	1.000	pfam_G2_nidogen/fibulin_G2F,superfamily_GFP,smart_G2_nidogen/fibulin_G2F,pfscan_G2_nidogen/fibulin_G2F	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd_dom,superfamily_GFP,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962				100	0	0	98	10	9.25926
DOCK7	0	genome.wustl.edu	37	1	62976306	62976306	+	Missense_Mutation	SNP	T	T	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	62976306	62976306	T	G	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	missense	c.4294	p.N1432H	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641				123	0	0	97	16	14.1593
SLC45A1	0	genome.wustl.edu	37	1	8390543	8390543	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	1	8390543	8390543	G	A	SNP	SLC45A1	ENST00000377479	human	ensembl	74_37	+1	known	silent	c.1092	p.T364	0.002	NULL	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A1	HGNC	ENSG00000162426				64	0	0	50	4	7.40741
NRAP	0	genome.wustl.edu	37	10	115356937	115356937	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	10	115356937	115356937	A	G	SNP	NRAP	ENST00000369358	human	ensembl	74_37	-1	known	missense	c.4363	p.Y1455H	1.000	smart_Nebulin_35r-motif	pfam_Nebulin_35r-motif,pfam_Znf_LIM,smart_Znf_LIM,smart_Nebulin_35r-motif,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,prints_Nebulin	-	no_errors	NRAP	HGNC	ENSG00000197893				116	0	0	81	19	19
CDC123	0	genome.wustl.edu	37	10	12259410	12259410	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	10	12259410	12259410	C	T	SNP	CDC123	ENST00000281141	human	ensembl	74_37	+1	known	silent	c.384	p.S128	0.992	pfam_D123,pirsf_Cell_div_Cdc123	pfam_D123,pirsf_Cell_div_Cdc123	-	no_errors	CDC123	HGNC	ENSG00000151465				110	0	0	102	15	12.8205
CCDC87	0	genome.wustl.edu	37	11	66358079	66358079	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	66358079	66358079	C	T	SNP	CCDC87	ENST00000333861	human	ensembl	74_37	-1	known	missense	c.2408	p.R803Q	0.967	pfam_MAP65_Ase1_PRC1	pfam_MAP65_Ase1_PRC1	-	no_errors	CCDC87	HGNC	ENSG00000182791				410	1	0.243309	435	65	13
FOLR2	0	genome.wustl.edu	37	11	71932037	71932037	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	71932037	71932037	C	T	SNP	FOLR2	ENST00000298223	human	ensembl	74_37	+1	known	missense	c.274	p.R92C	0.989	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like	-	no_errors	FOLR2	HGNC	ENSG00000165457				70	0	0	59	5	7.8125
C2CD3	0	genome.wustl.edu	37	11	73849766	73849766	+	Silent	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	73849766	73849766	T	C	SNP	C2CD3	ENST00000334126	human	ensembl	74_37	-1	known	silent	c.954	p.S318	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	C2CD3	HGNC	ENSG00000168014				139	0	0	114	27	19.1489
SCUBE2	0	genome.wustl.edu	37	11	9096029	9096029	+	Silent	SNP	T	T	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	11	9096029	9096029	T	C	SNP	SCUBE2	ENST00000457346	human	ensembl	74_37	-1	known	silent	c.516	p.E172	1.000	NULL	pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_CUB_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	SCUBE2	HGNC	ENSG00000175356				151	0	0	137	22	13.8365
ZFHX3	0	genome.wustl.edu	37	16	72984716	72984716	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	16	72984716	72984716	G	A	SNP	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	silent	c.2868	p.D956	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836				102	0	0	84	27	24.3243
GLG1	0	genome.wustl.edu	37	16	74640647	74640647	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	16	74640647	74640647	C	T	SNP	GLG1	ENST00000205061	human	ensembl	74_37	-1	known	missense	c.346	p.E116K	1.000	NULL	pfam_Cys-rich_GLG1_repeat	-	no_errors	GLG1	HGNC	ENSG00000090863				63	0	0	64	16	20
TNFRSF13B	0	genome.wustl.edu	37	17	16852054	16852054	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	16852054	16852054	G	A	SNP	TNFRSF13B	ENST00000261652	human	ensembl	74_37	-1	known	missense	c.443	p.P148L	0.975	NULL	pfam_TACI_Cys-rich-dom,prints_TNFR_13B	-	no_errors	TNFRSF13B	HGNC	ENSG00000240505				191	0	0	133	29	17.9012
TBC1D3P5	0	genome.wustl.edu	37	17	25748082	25748082	+	RNA	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	25748082	25748082	G	T	SNP	TBC1D3P5	ENST00000581469	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.060	-	-	-	no_errors	TBC1D3P5	HGNC	ENSG00000266433				20	0	0	16	4	20
SLFN12	0	genome.wustl.edu	37	17	33738912	33738912	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	17	33738912	33738912	G	A	SNP	SLFN12	ENST00000304905	human	ensembl	74_37	-1	known	silent	c.1182	p.N394	0.000	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN12	HGNC	ENSG00000172123				165	0	0	203	33	13.9831
LAMA1	0	genome.wustl.edu	37	18	6999933	6999933	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	18	6999933	6999933	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	silent	c.4446	p.G1482	0.988	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680				62	0	0	68	4	5.55556
NLRP9	0	genome.wustl.edu	37	19	56235423	56235423	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	56235423	56235423	G	A	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	silent	c.2082	p.G694	0.001	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792				89	0	0	71	47	39.8305
ZNF71	0	genome.wustl.edu	37	19	57133786	57133786	+	Silent	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	57133786	57133786	C	A	SNP	ZNF71	ENST00000328070	human	ensembl	74_37	+1	known	silent	c.1131	p.T377	0.018	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF71	HGNC	ENSG00000197951				168	0	0	188	17	8.29268
MAP2K7	0	genome.wustl.edu	37	19	7976134	7976134	+	Splice_Site	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	19	7976134	7976134	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	splice_site	c.982-1	e8-1	1.000	-	-	-	no_errors	MAP2K7	HGNC	ENSG00000076984				96	0	0	70	22	23.913
NBAS	0	genome.wustl.edu	37	2	15359018	15359018	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	15359018	15359018	C	T	SNP	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	missense	c.6311	p.R2104Q	0.994	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779				111	0	0	83	29	25.8929
RPRM	0	genome.wustl.edu	37	2	154334935	154334935	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	154334935	154334935	G	A	SNP	RPRM	ENST00000325926	human	ensembl	74_37	-1	known	missense	c.145	p.R49C	1.000	NULL	NULL	-	no_errors	RPRM	HGNC	ENSG00000177519				91	0	0	89	10	10.101
NT5C1B	0	genome.wustl.edu	37	2	18766073	18766073	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	18766073	18766073	G	A	SNP	NT5C1B	ENST00000359846	human	ensembl	74_37	-1	known	missense	c.610	p.R204W	0.610	NULL	pfam_5-nucleotidase	-	no_errors	NT5C1B	HGNC	ENSG00000185013				54	0	0	53	5	8.62069
ALS2CR11	0	genome.wustl.edu	37	2	202483773	202483773	+	Silent	SNP	G	G	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	202483773	202483773	G	C	SNP	ALS2CR11	ENST00000286195	human	ensembl	74_37	-1	known	silent	c.81	p.T27	0.000	NULL	superfamily_C2_dom	-	no_errors	ALS2CR11	HGNC	ENSG00000155754				167	0	0	180	21	10.4478
HEATR5B	0	genome.wustl.edu	37	2	37215971	37215971	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	37215971	37215971	G	A	SNP	HEATR5B	ENST00000233099	human	ensembl	74_37	-1	known	missense	c.5729	p.S1910L	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869				91	0	0	104	8	7.14286
SLC8A1	0	genome.wustl.edu	37	2	40657012	40657012	+	Missense_Mutation	SNP	G	G	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	2	40657012	40657012	G	T	SNP	SLC8A1	ENST00000332839	human	ensembl	74_37	-1	known	missense	c.409	p.L137M	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,pfscan_DnaJ_domain,prints_Na_Ca_Ex,prints_NaCa_exhngr1,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A1	HGNC	ENSG00000183023				151	1	0.657895	126	17	11.8881
FLRT3	0	genome.wustl.edu	37	20	14306243	14306243	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	14306243	14306243	C	A	SNP	FLRT3	ENST00000341420	human	ensembl	74_37	-1	known	missense	c.1910	p.R637I	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT3	HGNC	ENSG00000125848				173	0	0	167	17	9.23913
MYLK2	0	genome.wustl.edu	37	20	30409490	30409490	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	30409490	30409490	G	A	SNP	MYLK2	ENST00000375985	human	ensembl	74_37	+1	known	missense	c.722	p.G241E	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK2	HGNC	ENSG00000101306				244	1	0.408163	148	31	17.3184
SEMG2	0	genome.wustl.edu	37	20	43851369	43851369	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	43851369	43851369	C	A	SNP	SEMG2	ENST00000372769	human	ensembl	74_37	+1	known	missense	c.1096	p.Q366K	0.000	pfam_Semenogelin	pfam_Semenogelin	-	no_errors	SEMG2	HGNC	ENSG00000124157				107	0	0	109	32	22.695
KCNG1	0	genome.wustl.edu	37	20	49620847	49620847	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	20	49620847	49620847	G	A	SNP	KCNG1	ENST00000371571	human	ensembl	74_37	-1	known	missense	c.1271	p.T424M	0.998	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG1	HGNC	ENSG00000026559				182	0	0	122	18	12.8571
ADAMTS5	0	genome.wustl.edu	37	21	28306884	28306884	+	Silent	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	21	28306884	28306884	C	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	74_37	-1	known	silent	c.1590	p.L530	0.967	smart_ADAM_Cys-rich	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736				127	0	0	91	5	5.20833
ENSG00000161103	0	genome.wustl.edu	37	22	18846098	18846098	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	22	18846098	18846098	G	A	SNP	ENSG00000161103	ENST00000412938	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	AC008132.13	Clone_based_vega_gene	ENSG00000161103				80	0	0	88	5	5.37634
UROC1	0	genome.wustl.edu	37	3	126216983	126216983	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	3	126216983	126216983	C	T	SNP	UROC1	ENST00000290868	human	ensembl	74_37	-1	known	missense	c.1349	p.R450H	1.000	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	pfam_Urocanase,superfamily_Urocanase,pirsf_Urocanase	-	no_errors	UROC1	HGNC	ENSG00000159650				357	0	0	208	66	24.0876
SI	0	genome.wustl.edu	37	3	164786515	164786515	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	3	164786515	164786515	A	G	SNP	SI	ENST00000264382	human	ensembl	74_37	-1	known	missense	c.478	p.F160L	1.000	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	SI	HGNC	ENSG00000090402				152	0	0	145	47	24.4792
FSTL5	0	genome.wustl.edu	37	4	162307022	162307022	+	Silent	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	4	162307022	162307022	A	G	SNP	FSTL5	ENST00000306100	human	ensembl	74_37	-1	known	silent	c.2421	p.G807	0.926	NULL	pfam_Ig_I-set,pfam_Kazal_dom,pfam_Ig_V-set,smart_Kazal_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_hand_dom,pfscan_Ig-like_dom	-	no_errors	FSTL5	HGNC	ENSG00000168843				161	1	0.617284	182	12	6.18557
PCDHA6	0	genome.wustl.edu	37	5	140209734	140209734	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	140209734	140209734	C	T	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	silent	c.2058	p.A686	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842				173	0	0	154	33	17.6471
SLC36A3	0	genome.wustl.edu	37	5	150682788	150682788	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	150682788	150682788	G	A	SNP	SLC36A3	ENST00000377713	human	ensembl	74_37	-1	known	missense	c.128	p.S43L	0.675	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A3	HGNC	ENSG00000186334				58	0	0	50	13	20.6349
ADAMTS2	0	genome.wustl.edu	37	5	178700027	178700027	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	178700027	178700027	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	74_37	-1	known	silent	c.573	p.I191	0.438	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC	ENSG00000087116				186	0	0	107	25	18.9394
SRD5A1	0	genome.wustl.edu	37	5	6652021	6652021	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	6652021	6652021	G	A	SNP	SRD5A1	ENST00000274192	human	ensembl	74_37	+1	known	silent	c.360	p.A120	0.018	pfam_3-oxo-5_a-steroid_4-DH_C,pirsf_3-oxo-5-alpha-steroid_4-DH	pfam_3-oxo-5_a-steroid_4-DH_C,pfam_DUF1295,pirsf_3-oxo-5-alpha-steroid_4-DH,pfscan_3-oxo-5_a-steroid_4-DH_C	-	no_errors	SRD5A1	HGNC	ENSG00000145545				164	0	0	122	9	6.87023
MAP1B	0	genome.wustl.edu	37	5	71493747	71493747	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	71493747	71493747	C	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.4565	p.S1522F	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711				136	0	0	119	8	6.29921
RASA1	0	genome.wustl.edu	37	5	86672269	86672269	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	5	86672269	86672269	C	G	SNP	RASA1	ENST00000274376	human	ensembl	74_37	+1	known	missense	c.2071	p.L691V	1.000	superfamily_C2_dom	pfam_SH2,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_SH3_domain,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,smart_SH2,smart_SH3_domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_RasGAP,prints_SH2	-	no_errors	RASA1	HGNC	ENSG00000145715				72	0	0	67	13	16.25
ARMC2	0	genome.wustl.edu	37	6	109274249	109274249	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	109274249	109274249	G	A	SNP	ARMC2	ENST00000392644	human	ensembl	74_37	+1	known	missense	c.1610	p.R537H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMC2	HGNC	ENSG00000118690				23	0	0	18	3	14.2857
TRIM31	0	genome.wustl.edu	37	6	30073011	30073011	+	Nonsense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	30073011	30073011	G	A	SNP	TRIM31	ENST00000376734	human	ensembl	74_37	-1	known	nonsense	c.892	p.Q298*	0.001	NULL	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,smart_Znf_B-box,prints_Znf_B-box_chordata,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM31	HGNC	ENSG00000204616				116	0	0	109	11	9.16667
TRIM15	0	genome.wustl.edu	37	6	30131743	30131743	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	30131743	30131743	C	T	SNP	TRIM15	ENST00000376694	human	ensembl	74_37	+1	known	silent	c.282	p.C94	0.076	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM15	HGNC	ENSG00000204610				81	0	0	74	6	7.5
EPHA7	0	genome.wustl.edu	37	6	93979255	93979255	+	Missense_Mutation	SNP	T	T	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	6	93979255	93979255	T	G	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.1573	p.N525H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333				133	0	0	125	31	19.8718
LRCH4	0	genome.wustl.edu	37	7	100174731	100174731	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	100174731	100174731	C	T	SNP	LRCH4	ENST00000310300	human	ensembl	74_37	-1	known	missense	c.1342	p.V448M	0.000	NULL	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH4	HGNC	ENSG00000077454				92	0	0	95	6	5.94059
TMEM168	0	genome.wustl.edu	37	7	112412891	112412891	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	112412891	112412891	C	T	SNP	TMEM168	ENST00000312814	human	ensembl	74_37	-1	known	silent	c.1491	p.T497	0.004	NULL	superfamily_ConA-like_lec_gl_sf	-	no_errors	TMEM168	HGNC	ENSG00000146802				103	0	0	108	8	6.89655
CFTR	0	genome.wustl.edu	37	7	117180375	117180375	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	117180375	117180375	C	G	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.1091	p.S364C	1.000	superfamily_ABC1_TM_dom,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626				129	0	0	133	16	10.7383
ZNF467	0	genome.wustl.edu	37	7	149462920	149462920	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	149462920	149462920	C	T	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	missense	c.671	p.R224H	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444				30	0	0	32	6	15.7895
NT5C3A	0	genome.wustl.edu	37	7	33102236	33102236	+	Nonsense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	7	33102236	33102236	G	A	SNP	NT5C3A	ENST00000242210	human	ensembl	74_37	-1	known	nonsense	c.97	p.Q33*	1.000	NULL	pfam_Pyrimidine_nucleotidase_eu,superfamily_HAD-like_dom,tigrfam_Pyrimidine_nucleotidase_eu	-	no_errors	NT5C3A	HGNC	ENSG00000122643				34	0	0	32	4	11.1111
SYBU	0	genome.wustl.edu	37	8	110592047	110592047	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	110592047	110592047	C	T	SNP	SYBU	ENST00000276646	human	ensembl	74_37	-1	known	missense	c.715	p.D239N	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642				203	0	0	181	35	16.2037
PTP4A3	0	genome.wustl.edu	37	8	142437149	142437149	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	142437149	142437149	C	T	SNP	PTP4A3	ENST00000329397	human	ensembl	74_37	+1	known	silent	c.309	p.H103	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A3	HGNC	ENSG00000184489				265	0	0	178	34	16.0377
CHRNB3	0	genome.wustl.edu	37	8	42587096	42587096	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	8	42587096	42587096	G	A	SNP	CHRNB3	ENST00000289957	human	ensembl	74_37	+1	known	missense	c.646	p.G216S	0.993	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB3	HGNC	ENSG00000147432				148	0	0	121	8	6.20155
TGFBR1	0	genome.wustl.edu	37	9	101891170	101891170	+	Missense_Mutation	SNP	A	A	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	101891170	101891170	A	T	SNP	TGFBR1	ENST00000374994	human	ensembl	74_37	+1	known	missense	c.131	p.D44V	1.000	pfam_Activin_rcpt	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799				131	0	0	107	20	15.748
RNF20	0	genome.wustl.edu	37	9	104314699	104314699	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	104314699	104314699	C	T	SNP	RNF20	ENST00000389120	human	ensembl	74_37	+1	known	missense	c.1565	p.S522F	1.000	NULL	superfamily_STAT_TF_coiled-coil,superfamily_Prefoldin,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF20	HGNC	ENSG00000155827				358	0	0	301	65	17.7596
DOLK	0	genome.wustl.edu	37	9	131708693	131708693	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	131708693	131708693	C	T	SNP	DOLK	ENST00000372586	human	ensembl	74_37	-1	known	missense	c.890	p.R297H	0.984	NULL	NULL	-	no_errors	DOLK	HGNC	ENSG00000175283				192	0	0	192	59	23.506
COL5A1	0	genome.wustl.edu	37	9	137582873	137582873	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	137582873	137582873	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	74_37	+1	known	silent	c.225	p.Y75	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635				192	0	0	124	12	8.82353
PNPLA7	0	genome.wustl.edu	37	9	140357910	140357910	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	140357910	140357910	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	silent	c.3300	p.D1100	0.947	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653				19	0	0	19	6	24
MLLT3	0	genome.wustl.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	20414343	20414343	A	G	SNP	MLLT3	ENST00000380338	human	ensembl	74_37	-1	known	silent	c.501	p.S167	0.998	NULL	pfam_YEATS,pfscan_YEATS	-	no_errors	MLLT3	HGNC	ENSG00000171843				103	1	0.961538	112	7	5.88235
KIAA1161	0	genome.wustl.edu	37	9	34371925	34371925	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	34371925	34371925	C	T	SNP	KIAA1161	ENST00000297625	human	ensembl	74_37	-1	known	silent	c.915	p.Q305	1.000	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_31,superfamily_Glycoside_hydrolase_SF	-	no_errors	KIAA1161	HGNC	ENSG00000164976				116	0	0	114	7	5.78512
LOC100996870	0	genome.wustl.edu	37	9	66457986	66457986	+	RNA	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	66457986	66457986	G	A	SNP	LOC100996870	ENST00000452184	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				15	0	0	24	3	11.1111
LOC100996870	0	genome.wustl.edu	37	9	66459918	66459918	+	RNA	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	66459918	66459918	C	T	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113				18	0	0	16	7	30.4348
MSL3	0	genome.wustl.edu	37	X	11783877	11783877	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	11783877	11783877	G	A	SNP	MSL3	ENST00000337339	human	ensembl	74_37	+1	known	silent	c.1200	p.P400	0.000	NULL	pfam_MRG_dom,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302				109	0	0	113	15	11.7188
GPM6B	0	genome.wustl.edu	37	X	13803803	13803803	+	Silent	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	13803803	13803803	G	A	SNP	GPM6B	ENST00000316715	human	ensembl	74_37	-1	known	silent	c.306	p.T102	0.312	pfam_Myelin_PLP	pfam_Myelin_PLP,smart_Myelin_PLP,prints_Myelin_PLP	-	no_errors	GPM6B	HGNC	ENSG00000046653				46	0	0	48	12	20
SPANXD	0	genome.wustl.edu	37	X	140785824	140785824	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	140785824	140785824	C	A	SNP	SPANXD	ENST00000370515	human	ensembl	74_37	-1	known	missense	c.92	p.G31V	0.005	pfam_SPANX_prot	pfam_SPANX_prot	-	no_errors	SPANXD	HGNC	ENSG00000196406				221	1	0.45045	236	24	9.23077
EIF2S3	0	genome.wustl.edu	37	X	24086195	24086195	+	Silent	SNP	C	C	T			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	24086195	24086195	C	T	SNP	EIF2S3	ENST00000253039	human	ensembl	74_37	+1	known	silent	c.982	p.L328	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_B-barrel	pfam_EF_GTP-bd_dom,pfam_TIF2_gsu_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_Transl_elong_EF1A/Init_IF2_C,prints_EF_GTP-bd_dom	-	no_errors	EIF2S3	HGNC	ENSG00000130741				71	0	0	58	5	7.93651
FAM47C	0	genome.wustl.edu	37	X	37026574	37026574	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	37026574	37026574	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.91	p.A31T	0.002	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173				49	0	0	30	13	30.2326
ALAS2	0	genome.wustl.edu	37	X	55052357	55052357	+	Missense_Mutation	SNP	A	A	C			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	55052357	55052357	A	C	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.77	p.V26G	0.023	pfam_5aminolev_synth_preseq	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578				40	0	0	31	9	22.5
PCDH19	0	genome.wustl.edu	37	X	99661593	99661593	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	X	99661593	99661593	G	A	SNP	PCDH19	ENST00000373034	human	ensembl	74_37	-1	known	missense	c.2003	p.A668V	1.000	smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194				38	0	0	24	6	20
CNTNAP3B	0	genome.wustl.edu	37	9	43844265	43844265	+	Frame_Shift_Del	DEL	G	G	-			TCGA-RD-A7BS-01A-11D-A32N-08	TCGA-RD-A7BS-10A-01D-A32N-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	49a05c84-ba44-44e8-88fc-d58d46de9292	7d20beda-a9f6-434e-8e78-b7e0ca187075	9	43844265	43844265	G	-	DEL	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	frame_shift_del	c.1599	p.L534fs	0.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529				98	0	0	108	6	5.26316
