Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DENND2C	0	genome.wustl.edu	37	1	115167929	115167929	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	1	115167929	115167929	G	A	SNP	DENND2C	ENST00000393274	human	ensembl	74_37	-1	known	missense	c.677	p.T226M	0.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND2C	HGNC	ENSG00000175984	tier1	rs143833683	-	110	0	0.00	94	5	5.05
ENSG00000236817	0	genome.wustl.edu	37	1	247729207	247729207	+	RNA	DEL	T	T	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	1	247729207	247729207	T	-	DEL	ENSG00000236817	ENST00000435333	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-978I15.10	Clone_based_vega_gene	ENSG00000236817	tier1			17	0	0.00	8	5	38.46
ENSG00000266156	0	genome.wustl.edu	37	19	20988370	20988370	+	RNA	DEL	T	T	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	19	20988370	20988370	T	-	DEL	ENSG00000266156	ENST00000582722	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC010329.1	Clone_based_ensembl_gene	ENSG00000266156	tier1			21	0	0.00	14	3	17.65
FAM46C	0	genome.wustl.edu	37	1	118166396	118166396	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	1	118166396	118166396	C	A	SNP	FAM46C	ENST00000369448	human	ensembl	74_37	+1	known	missense	c.906	p.S302R	1.000	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46C	HGNC	ENSG00000183508				37	0	0.00	37	4	9.76
FHOD3	0	genome.wustl.edu	37	18	34261459	34261460	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	18	34261459	34261460	AG	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1371_1372	p.R461fs	0.879:1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1			44	0	0.00	34	3	8.11
GFM1	0	genome.wustl.edu	37	3	158383242	158383242	+	Silent	SNP	A	A	G			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	3	158383242	158383242	A	G	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	silent	c.1497	p.L499	0.997	superfamily_EFG_III-V,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	tier1	-	-	56	0	0.00	27	4	12.90
GGT3P	0	genome.wustl.edu	37	22	18769203	18769203	+	RNA	SNP	G	G	A			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	22	18769203	18769203	G	A	SNP	GGT3P	ENST00000412448	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.149	-	-	-	no_errors	GGT3P	HGNC	ENSG00000197421	tier1	rs111245818	-	35	0	0.00	50	9	15.25
ITIH6	0	genome.wustl.edu	37	X	54783556	54783556	+	Missense_Mutation	SNP	A	A	T			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	X	54783556	54783556	A	T	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	missense	c.2951	p.L984Q	0.001	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313	tier1	-	-	31	0	0.00	35	4	10.26
KIF3B	0	genome.wustl.edu	37	20	30898763	30898765	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	20	30898763	30898765	GAG	-	DEL	KIF3B	ENST00000375712	human	ensembl	74_37	+1	known	in_frame_del	c.1183_1185	p.E398in_frame_del	1.000:1.000:0.991	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF3B	HGNC	ENSG00000101350	tier1			32	0	0.00	33	4	10.81
MYL7	0	genome.wustl.edu	37	7	44179392	44179392	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	7	44179392	44179392	C	-	DEL	MYL7	ENST00000223364	human	ensembl	74_37	-1	known	frame_shift_del	c.366	p.N123fs	0.998	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL7	HGNC	ENSG00000106631	tier1			15	0	0.00	16	2	11.11
POM121	0	genome.wustl.edu	37	7	72412551	72412551	+	Silent	SNP	C	C	A			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	7	72412551	72412551	C	A	SNP	POM121	ENST00000434423	human	ensembl	74_37	+1	known	silent	c.2019	p.A673	0.002	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	tier1	-	-	45	0	0.00	25	4	13.79
PRDM14	0	genome.wustl.edu	37	8	70967556	70967556	+	Nonsense_Mutation	SNP	G	G	T			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	8	70967556	70967556	G	T	SNP	PRDM14	ENST00000276594	human	ensembl	74_37	-1	known	nonsense	c.1467	p.Y489*	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM14	HGNC	ENSG00000147596	tier1	-	-	53	0	0.00	71	6	7.79
PTPN14	0	genome.wustl.edu	37	1	214557049	214557051	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	1	214557049	214557051	CCT	-	DEL	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	in_frame_del	c.2149_2147	p.E716in_frame_del	0.182:0.503:0.995	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	tier1			38	0	0.00	30	3	9.09
TBC1D29	0	genome.wustl.edu	37	17	28890301	28890301	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	17	28890301	28890301	G	A	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	missense	c.311	p.S104N	0.904	NULL	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733				24	0	0.00	16	6	27.27
TP53I3	0	genome.wustl.edu	37	2	24300469	24300469	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	2	24300469	24300469	C	T	SNP	TP53I3	ENST00000238721	human	ensembl	74_37	-1	known	missense	c.979	p.V327I	1.000	smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER,tigrfam_Quinone_OxRdtase_PIG3	-	no_errors	TP53I3	HGNC	ENSG00000115129				46	0	0.00	36	4	10.00
TUBBP5	0	genome.wustl.edu	37	9	141070768	141070768	+	RNA	SNP	C	C	T			TCGA-RD-A8N0-01A-12D-A364-08	TCGA-RD-A8N0-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4e6ed210-3865-483c-8c33-bf11bc28d348	07b09eee-369e-4194-89b5-2c9d35250960	9	141070768	141070768	C	T	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	rs4609262	-	20	0	0.00	14	4	22.22
