Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AZI1	0	genome.wustl.edu	37	17	79172037	79172038	+	Frame_Shift_Ins	INS	-	-	C			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	17	79172037	79172038	-	C	INS	AZI1	ENST00000269392	human	ensembl	74_37	-1	known	frame_shift_ins	c.1348_1347	p.S449fs	0.123:0.120	NULL	superfamily_t-SNARE	-	no_errors	AZI1	HGNC	ENSG00000141577	tier1			27	0	0.00	21	2	8.70
CCDC147	0	genome.wustl.edu	37	10	106166486	106166486	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	10	106166486	106166486	C	T	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.2191	p.H731Y	1.000	superfamily_Homeodomain-like	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	tier1	-	-	123	0	0.00	144	12	7.69
ENSG00000265788	0	genome.wustl.edu	37	17	25989957	25989959	+	RNA	DEL	CAG	CAG	-			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	17	25989957	25989959	CAG	-	DEL	ENSG00000265788	ENST00000583179	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.014:0.016	-	-	-	no_errors	RP11-19P22.5	Clone_based_vega_gene	ENSG00000265788	tier1			17	0	0.00	15	3	16.67
GRIN3A	0	genome.wustl.edu	37	9	104449192	104449192	+	Silent	SNP	G	G	A			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	9	104449192	104449192	G	A	SNP	GRIN3A	ENST00000361820	human	ensembl	74_37	-1	known	silent	c.990	p.C330	0.195	superfamily_Peripla_BP_I	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Glu_rcpt_Glu/Gly-bd,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	-	no_errors	GRIN3A	HGNC	ENSG00000198785				42	0	0.00	71	4	5.33
LRRC42	0	genome.wustl.edu	37	1	54433488	54433488	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	1	54433488	54433488	C	T	SNP	LRRC42	ENST00000319223	human	ensembl	74_37	+1	known	missense	c.1163	p.S388L	0.244	NULL	NULL	-	no_errors	LRRC42	HGNC	ENSG00000116212				35	0	0.00	51	3	5.56
PDE4DIP	0	genome.wustl.edu	37	1	144994902	144994902	+	RNA	SNP	G	G	A			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	1	144994902	144994902	G	A	SNP	PDE4DIP	ENST00000530472	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	rs4649499	-	25	0	0.00	22	8	25.81
TRIM10	0	genome.wustl.edu	37	6	30122103	30122103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	6	30122103	30122103	C	-	DEL	TRIM10	ENST00000449742	human	ensembl	74_37	-1	known	frame_shift_del	c.1089	p.R364fs	0.313	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM10	HGNC	ENSG00000204613	tier1			31	0	0.00	37	2	5.13
ZNF98	0	genome.wustl.edu	37	19	22575777	22575777	+	Missense_Mutation	SNP	T	T	C			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	19	22575777	22575777	T	C	SNP	ZNF98	ENST00000357774	human	ensembl	74_37	-1	known	missense	c.260	p.Y87C	0.004	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF98	HGNC	ENSG00000197360				15	0	0.00	34	7	17.07
ZNF99	0	genome.wustl.edu	37	19	22941279	22941279	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A8N4-01A-21D-A364-08	TCGA-RD-A8N4-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1ada4b38-55e4-4e5a-b58e-d442058bfd92	daea6ceb-2591-422c-b729-9c1bc568786c	19	22941279	22941279	C	G	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	missense	c.1159	p.E387Q	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF99	HGNC	ENSG00000213973				46	0	0.00	49	3	5.77
