Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ACIN1	0	genome.wustl.edu	37	14	23532236	23532236	+	Missense_Mutation	SNP	A	A	C			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	14	23532236	23532236	A	C	SNP	ACIN1	ENST00000262710	human	ensembl	74_37	-1	known	missense	c.2959	p.S987A	1.000	NULL	pfam_SAP_dom,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	ACIN1	HGNC	ENSG00000100813	tier1	-	-	107	0	0.00	93	6	6.06
AIM2	0	genome.wustl.edu	37	1	159032487	159032487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	159032487	159032487	T	-	DEL	AIM2	ENST00000368130	human	ensembl	74_37	-1	known	frame_shift_del	c.1027	p.T343fs	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_NA-bd_OB-fold,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	AIM2	HGNC	ENSG00000163568	tier1			40	0	0.00	36	3	7.69
B4GALNT4	0	genome.wustl.edu	37	11	375479	375479	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	11	375479	375479	G	A	SNP	B4GALNT4	ENST00000329962	human	ensembl	74_37	+1	known	missense	c.802	p.G268S	0.951	smart_PA14	pfam_Chond_GalNAc,pfam_PA14,smart_PA14	-	no_errors	B4GALNT4	HGNC	ENSG00000182272	tier1	-	-	100	0	0.00	110	9	7.56
CABIN1	0	genome.wustl.edu	37	22	24567822	24567822	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	22	24567822	24567822	C	T	SNP	CABIN1	ENST00000263119	human	ensembl	74_37	+1	known	missense	c.5899	p.R1967C	0.987	NULL	pfam_MEF2_binding,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CABIN1	HGNC	ENSG00000099991	tier1	-	-	55	0	0.00	37	5	11.90
CACNA1A	0	genome.wustl.edu	37	19	13428098	13428098	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	13428098	13428098	C	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1383	p.K461N	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	tier1	-	-	44	0	0.00	25	5	16.67
CARM1	0	genome.wustl.edu	37	19	11031116	11031116	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	11031116	11031116	A	G	SNP	CARM1	ENST00000327064	human	ensembl	74_37	+1	known	missense	c.1201	p.T401A	1.000	pfam_Arg_MeTrfase	pfam_Histone-Arg_MeTrfase_N,pfam_Arg_MeTrfase,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_Small_mtfrase_dom,pfam_mo5U34_MeTrfas-like,pfam_Methyltransf_11	-	no_errors	CARM1	HGNC	ENSG00000142453	tier1	-	-	32	0	0.00	30	4	11.76
COL12A1	0	genome.wustl.edu	37	6	75875409	75875409	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	6	75875409	75875409	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.2797	p.R933C	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	tier1	-	-	105	0	0.00	82	5	5.75
COL17A1	0	genome.wustl.edu	37	10	105812833	105812833	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	10	105812833	105812833	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.1895	p.R632H	0.935	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	tier1	-	-	101	0	0.00	78	14	15.22
COL27A1	0	genome.wustl.edu	37	9	116918267	116918269	+	In_Frame_Del	DEL	GCG	GCG	-			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	GCG	GCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	9	116918267	116918269	GCG	-	DEL	COL27A1	ENST00000356083	human	ensembl	74_37	+1	known	in_frame_del	c.37_39	p.A16in_frame_del	1.000:1.000:0.993	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL27A1	HGNC	ENSG00000196739	tier1			27	0	0.00	15	3	16.67
DST	0	genome.wustl.edu	37	6	56392408	56392408	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	6	56392408	56392408	C	-	DEL	DST	ENST00000370754	human	ensembl	74_37	-1	known	frame_shift_del	c.17712	p.H5905fs	0.989	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_dom,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	DST	HGNC	ENSG00000151914	tier1			38	0	0.00	28	2	6.67
ENC1	0	genome.wustl.edu	37	5	73931500	73931500	+	Missense_Mutation	SNP	T	T	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	5	73931500	73931500	T	A	SNP	ENC1	ENST00000302351	human	ensembl	74_37	-1	known	missense	c.811	p.R271W	0.994	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	ENC1	HGNC	ENSG00000171617	tier1	-	-	36	0	0.00	45	4	8.16
ENPEP	0	genome.wustl.edu	37	4	111397948	111397948	+	Silent	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	4	111397948	111397948	C	T	SNP	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	silent	c.378	p.S126	0.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	tier1	-	-	129	0	0.00	131	9	6.43
ENSG00000230239	0	genome.wustl.edu	37	1	17185709	17185709	+	RNA	SNP	A	A	G			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	17185709	17185709	A	G	SNP	ENSG00000230239	ENST00000414128	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-108M9.2	Clone_based_vega_gene	ENSG00000230239	tier1	-	-	10	0	0.00	14	6	30.00
ENSG00000252404	0	genome.wustl.edu	37	1	9142937	9142938	+	RNA	INS	-	-	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	9142937	9142938	-	A	INS	ENSG00000252404	ENST00000516595	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.022:0.023	-	-	-	no_errors	SCARNA16	RFAM	ENSG00000252404	tier1			10	0	0.00	5	2	28.57
ERCC6	0	genome.wustl.edu	37	10	50678710	50678710	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	10	50678710	50678710	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	missense	c.3296	p.S1099N	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	tier1	-	-	116	0	0.00	101	8	7.34
ESPNP	0	genome.wustl.edu	37	1	17026504	17026504	+	RNA	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	17026504	17026504	G	A	SNP	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869	tier1	rs200083134	-	13	0	0.00	10	4	28.57
FCGBP	0	genome.wustl.edu	37	19	40368553	40368553	+	Silent	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	40368553	40368553	C	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	silent	c.12795	p.T4265	0.017	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920				45	0	0.00	54	4	6.90
GAD1	0	genome.wustl.edu	37	2	171713632	171713632	+	Silent	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	2	171713632	171713632	C	T	SNP	GAD1	ENST00000358196	human	ensembl	74_37	+1	known	silent	c.1518	p.G506	0.065	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD1	HGNC	ENSG00000128683	tier1	rs200287610	-	77	0	0.00	66	5	7.04
GPR158	0	genome.wustl.edu	37	10	25886793	25886793	+	Silent	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	10	25886793	25886793	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	silent	c.2238	p.S746	0.009	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	tier1	-	-	96	0	0.00	88	8	8.33
HECTD2	0	genome.wustl.edu	37	10	93253221	93253221	+	Missense_Mutation	SNP	A	A	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	10	93253221	93253221	A	T	SNP	HECTD2	ENST00000446394	human	ensembl	74_37	+1	known	missense	c.1489	p.S497C	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	-	no_errors	HECTD2	HGNC	ENSG00000165338	tier1	-	-	56	0	0.00	57	5	8.06
KATNAL1	0	genome.wustl.edu	37	13	30805517	30805517	+	Silent	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	13	30805517	30805517	C	T	SNP	KATNAL1	ENST00000380615	human	ensembl	74_37	-1	known	silent	c.819	p.S273	0.157	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_Vps4_C,pfam_DNA_helicase_Holl-junc_RuvB_N,pfam_ATPase_AAA-2,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	KATNAL1	HGNC	ENSG00000102781	tier1	-	-	77	0	0.00	71	13	15.48
MAB21L2	0	genome.wustl.edu	37	4	151505063	151505063	+	Silent	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	4	151505063	151505063	G	A	SNP	MAB21L2	ENST00000317605	human	ensembl	74_37	+1	known	silent	c.882	p.S294	0.945	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	pfam_Mab-21_dom,pfscan_Ricin_B_lectin	-	no_errors	MAB21L2	HGNC	ENSG00000181541	tier1	-	-	59	0	0.00	55	13	19.12
MBD5	0	genome.wustl.edu	37	2	149227610	149227610	+	Missense_Mutation	SNP	T	T	C			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	2	149227610	149227610	T	C	SNP	MBD5	ENST00000407073	human	ensembl	74_37	+1	known	missense	c.2098	p.S700P	1.000	NULL	superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_PWWP_dom	-	no_errors	MBD5	HGNC	ENSG00000204406	tier1	-	-	32	0	0.00	27	8	22.86
MST1L	0	genome.wustl.edu	37	1	17084815	17084815	+	RNA	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	17084815	17084815	G	A	SNP	MST1L	ENST00000544155	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	MST1L	HGNC	ENSG00000186715	tier1	rs11260922	-	8	0	0.00	3	9	75.00
NRXN2	0	genome.wustl.edu	37	11	64457919	64457919	+	Frame_Shift_Del	DEL	C	C	-			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	11	64457919	64457919	C	-	DEL	NRXN2	ENST00000265459	human	ensembl	74_37	-1	known	frame_shift_del	c.808	p.A270fs	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	tier1			11	0	0.00	3	3	50.00
PCDHA1	0	genome.wustl.edu	37	5	140168138	140168138	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	5	140168138	140168138	C	T	SNP	PCDHA1	ENST00000504120	human	ensembl	74_37	+1	known	missense	c.2263	p.R755W	0.373	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA1	HGNC	ENSG00000204970	tier1	-	-	28	0	0.00	27	5	15.62
PCDHA13	0	genome.wustl.edu	37	5	140262318	140262318	+	Missense_Mutation	SNP	T	T	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	5	140262318	140262318	T	A	SNP	PCDHA13	ENST00000289272	human	ensembl	74_37	+1	known	missense	c.465	p.D155E	0.366	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA13	HGNC	ENSG00000239389	tier1	-	-	61	0	0.00	53	10	15.62
PCDHGA4	0	genome.wustl.edu	37	5	140734787	140734787	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	5	140734787	140734787	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.20	p.R7H	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	tier1	-	-	54	0	0.00	66	9	11.84
POM121	0	genome.wustl.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	-	CTC			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	7	72413723	72413724	-	CTC	INS	POM121	ENST00000434423	human	ensembl	74_37	+1	known	in_frame_ins	c.3191_3192	p.1065in_frame_insS	0.980:0.870	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	tier1			61	0	0.00	63	6	8.70
PPAN-P2RY11	0	genome.wustl.edu	37	19	10221461	10221461	+	Nonsense_Mutation	SNP	G	G	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	10221461	10221461	G	T	SNP	PPAN-P2RY11	ENST00000393796	human	ensembl	74_37	+1	known	nonsense	c.1120	p.E374*	0.000	NULL	pfam_Brix,pfam_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	PPAN-P2RY11	HGNC	ENSG00000243207	tier1	-	-	137	0	0.00	116	10	7.94
SCAF8	0	genome.wustl.edu	37	6	155145372	155145372	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	6	155145372	155145372	C	T	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	missense	c.2129	p.P710L	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079	tier1	-	-	113	0	0.00	72	17	19.10
SLC36A4	0	genome.wustl.edu	37	11	92887388	92887388	+	Missense_Mutation	SNP	T	T	C			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	11	92887388	92887388	T	C	SNP	SLC36A4	ENST00000326402	human	ensembl	74_37	-1	known	missense	c.1093	p.I365V	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A4	HGNC	ENSG00000180773	tier1	-	-	115	0	0.00	105	11	9.48
SLC6A11	0	genome.wustl.edu	37	3	10886030	10886030	+	Missense_Mutation	SNP	A	A	G			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	3	10886030	10886030	A	G	SNP	SLC6A11	ENST00000254488	human	ensembl	74_37	+1	known	missense	c.755	p.K252R	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,superfamily_S-AdoMet_deCO2ase_core,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT3	-	no_errors	SLC6A11	HGNC	ENSG00000132164	tier1	-	-	38	0	0.00	36	4	10.00
SLITRK5	0	genome.wustl.edu	37	13	88329638	88329638	+	Silent	SNP	G	G	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	13	88329638	88329638	G	T	SNP	SLITRK5	ENST00000325089	human	ensembl	74_37	+1	known	silent	c.1995	p.V665	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK5	HGNC	ENSG00000165300	tier1	-	-	35	0	0.00	33	8	19.51
SMYD3	0	genome.wustl.edu	37	1	246498701	246498701	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	1	246498701	246498701	C	A	SNP	SMYD3	ENST00000388985	human	ensembl	74_37	-1	known	missense	c.304	p.V102F	1.000	pfam_SET_dom,smart_SET_dom	pfam_SET_dom,pfam_Znf_MYND,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_MYND	-	no_errors	SMYD3	HGNC	ENSG00000185420	tier1	-	-	117	0	0.00	92	16	14.81
SUPT5H	0	genome.wustl.edu	37	19	39957335	39957335	+	Silent	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	39957335	39957335	G	A	SNP	SUPT5H	ENST00000432763	human	ensembl	74_37	+1	known	silent	c.987	p.R329	1.000	pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N_dom,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	tier1	-	-	144	0	0.00	92	8	8.00
TAF1L	0	genome.wustl.edu	37	9	32630488	32630488	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	9	32630488	32630488	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	74_37	-1	known	missense	c.5090	p.T1697I	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	tier1	-	-	115	0	0.00	102	12	10.53
TMEM184A	0	genome.wustl.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	-	GCC			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	7	1586653	1586654	-	GCC	INS	TMEM184A	ENST00000297477	human	ensembl	74_37	-1	known	in_frame_ins	c.1177_1176	p.392in_frame_insG	0.000:0.000	NULL	pfam_Ost-alpha	-	no_errors	TMEM184A	HGNC	ENSG00000164855	tier1			11	0	0.00	11	7	38.89
TRIM60	0	genome.wustl.edu	37	4	165962393	165962393	+	Missense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	4	165962393	165962393	G	A	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	missense	c.1169	p.R390Q	0.002	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	tier1	rs143583038	-	127	0	0.00	123	10	7.46
TSHZ2	0	genome.wustl.edu	37	20	51871290	51871290	+	Silent	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	20	51871290	51871290	G	A	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	silent	c.1293	p.S431	0.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	tier1	-	-	150	0	0.00	123	9	6.82
UBQLNL	0	genome.wustl.edu	37	11	5537652	5537652	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	11	5537652	5537652	C	T	SNP	UBQLNL	ENST00000380184	human	ensembl	74_37	-1	putative	missense	c.20	p.R7Q	0.006	NULL	pfam_Ubiquitin_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLNL	HGNC	ENSG00000175518	tier1	-	-	66	0	0.00	56	7	11.11
UXS1	0	genome.wustl.edu	37	2	106729111	106729111	+	Missense_Mutation	SNP	C	C	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	2	106729111	106729111	C	A	SNP	UXS1	ENST00000283148	human	ensembl	74_37	-1	known	missense	c.870	p.E290D	1.000	pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_Epimerase_deHydtase,pfam_UXS1_N,pfam_dTDP_dehydrorham_reduct,pfam_Male_sterile_NAD-bd,pfam_3Beta_OHSteriod_DH/Estase	-	no_errors	UXS1	HGNC	ENSG00000115652				36	0	0.00	46	5	9.62
VPS52	0	genome.wustl.edu	37	6	33236383	33236383	+	Nonsense_Mutation	SNP	G	G	A			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	6	33236383	33236383	G	A	SNP	VPS52	ENST00000445902	human	ensembl	74_37	-1	known	nonsense	c.592	p.Q198*	1.000	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	pfam_Vps52,pfam_Exocyst_Exoc1/SEC3	-	no_errors	VPS52	HGNC	ENSG00000223501				52	0	0.00	48	3	5.88
ZFHX3	0	genome.wustl.edu	37	16	72831358	72831360	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	16	72831358	72831360	TTG	-	DEL	ZFHX3	ENST00000268489	human	ensembl	74_37	-1	known	in_frame_del	c.5223_5221	p.Q1741in_frame_del	0.993:0.992:0.988	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	tier1			18	0	0.00	15	4	21.05
ZHX1	0	genome.wustl.edu	37	8	124266095	124266095	+	Missense_Mutation	SNP	C	C	T			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	8	124266095	124266095	C	T	SNP	ZHX1	ENST00000297857	human	ensembl	74_37	-1	known	missense	c.2092	p.G698R	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZHX1	HGNC	ENSG00000165156	tier1	-	-	104	0	0.00	89	7	7.29
ZNF224	0	genome.wustl.edu	37	19	44611545	44611545	+	Missense_Mutation	SNP	C	C	G			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	44611545	44611545	C	G	SNP	ZNF224	ENST00000336976	human	ensembl	74_37	+1	known	missense	c.1232	p.T411R	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF224	HGNC	ENSG00000267680	tier1	-	-	74	0	0.00	70	9	11.39
ZNF43	0	genome.wustl.edu	37	19	21991216	21991216	+	Silent	SNP	T	T	C			TCGA-RD-A8N5-01A-12D-A364-08	TCGA-RD-A8N5-10A-01D-A362-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9f7dfbea-7b16-4b34-837a-498f840f9ad3	10726033-4d39-4c9c-b962-cdf946346a3c	19	21991216	21991216	T	C	SNP	ZNF43	ENST00000354959	human	ensembl	74_37	-1	known	silent	c.1623	p.E541	0.404	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF43	HGNC	ENSG00000198521	tier1	-	-	76	0	0.00	79	6	7.06
