Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCA9	0	genome.wustl.edu	37	17	67047198	67047199	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	67047198	67047199	-	T	INS	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	frame_shift_ins	c.70_69	p.W23fs	0.999:0.987	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1			63	0	0.00	55	10	15.38
ABL2	0	genome.wustl.edu	37	1	179077318	179077318	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	179077318	179077318	G	A	SNP	ABL2	ENST00000502732	human	ensembl	74_37	-1	known	silent	c.3084	p.G1028	0.001	pfam_F-actin_binding	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_F-actin_binding,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,pfam_SH3-like_bac-type,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_F-actin_binding,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	ABL2	HGNC	ENSG00000143322	tier1	-	-	122	0	0.00	67	28	29.47
ACOT7	0	genome.wustl.edu	37	1	6324709	6324709	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	6324709	6324709	C	T	SNP	ACOT7	ENST00000377855	human	ensembl	74_37	-1	known	missense	c.1091	p.R364Q	0.950	NULL	pfam_Thioestr_supf	-	no_errors	ACOT7	HGNC	ENSG00000097021	tier1	-	-	27	0	0.00	16	9	36.00
ACSS1	0	genome.wustl.edu	37	20	25002052	25002053	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	25002052	25002053	-	A	INS	ACSS1	ENST00000323482	human	ensembl	74_37	-1	known	frame_shift_ins	c.1081_1080	p.E360fs	1.000:1.000	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	pfam_AMP-dep_Synth/Lig,tigrfam_Ac_CoA_lig	-	no_errors	ACSS1	HGNC	ENSG00000154930	tier1			22	0	0.00	17	4	19.05
ACSS2	0	genome.wustl.edu	37	20	33508905	33508905	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	33508905	33508905	C	T	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	missense	c.1279	p.R427C	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	165	0	0.00	103	43	29.45
ACTN2	0	genome.wustl.edu	37	1	236902765	236902765	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	236902765	236902765	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1040	p.T347M	1.000	pfam_Spectrin_repeat	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522	tier1	-	-	66	0	0.00	30	20	40.00
ACTN2	0	genome.wustl.edu	37	1	236908064	236908064	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	236908064	236908064	C	T	SNP	ACTN2	ENST00000366578	human	ensembl	74_37	+1	known	missense	c.1394	p.A465V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN2	HGNC	ENSG00000077522	tier1	-	-	54	0	0.00	20	15	42.86
ACVR1B	0	genome.wustl.edu	37	12	52387834	52387834	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	52387834	52387834	G	A	SNP	ACVR1B	ENST00000257963	human	ensembl	74_37	+1	known	silent	c.1458	p.T486	0.010	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	tier1	-	-	77	0	0.00	79	35	30.70
ACVR2A	0	genome.wustl.edu	37	2	148683686	148683686	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	148683686	148683686	A	-	DEL	ACVR2A	ENST00000241416	human	ensembl	74_37	+1	known	frame_shift_del	c.1303	p.K437fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_TGFB_receptor	-	no_errors	ACVR2A	HGNC	ENSG00000121989	tier1			111	0	0.00	90	11	10.89
ADAD2	0	genome.wustl.edu	37	16	84229204	84229204	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	84229204	84229204	C	T	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	missense	c.1199	p.A400V	0.997	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955	tier1	-	-	43	0	0.00	23	17	42.50
ADAM23	0	genome.wustl.edu	37	2	207460860	207460861	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	207460860	207460861	-	C	INS	ADAM23	ENST00000264377	human	ensembl	74_37	+1	known	frame_shift_ins	c.2333_2334	p.K781fs	0.005:0.000	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM23	HGNC	ENSG00000114948	tier1			46	0	0.00	39	9	18.75
ADAM7	0	genome.wustl.edu	37	8	24358389	24358389	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	24358389	24358389	A	C	SNP	ADAM7	ENST00000175238	human	ensembl	74_37	+1	known	missense	c.2089	p.K697Q	0.128	NULL	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM7	HGNC	ENSG00000069206	tier1	-	-	145	0	0.00	127	20	13.61
ADAMTS12	0	genome.wustl.edu	37	5	33616019	33616019	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	33616019	33616019	C	T	SNP	ADAMTS12	ENST00000504830	human	ensembl	74_37	-1	known	missense	c.2302	p.A768T	1.000	pfam_ADAM_spacer1	pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS12	HGNC	ENSG00000151388	tier1	-	-	120	0	0.00	83	31	27.19
ADAMTS16	0	genome.wustl.edu	37	5	5239336	5239336	+	Missense_Mutation	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	5239336	5239336	T	A	SNP	ADAMTS16	ENST00000274181	human	ensembl	74_37	+1	known	missense	c.2227	p.S743T	1.000	prints_Peptidase_M12B_ADAM-TS	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	tier1	-	-	167	0	0.00	92	45	32.85
ADAMTS20	0	genome.wustl.edu	37	12	43886402	43886402	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	43886402	43886402	T	C	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.982	p.T328A	0.988	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	tier1	-	-	26	0	0.00	20	4	16.67
ADARB2	0	genome.wustl.edu	37	10	1262905	1262905	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	1262905	1262905	C	T	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	silent	c.1668	p.T556	0.057	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	tier1	-	-	26	0	0.00	22	5	18.52
ADCY2	0	genome.wustl.edu	37	5	7709336	7709336	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	7709336	7709336	A	G	SNP	ADCY2	ENST00000338316	human	ensembl	74_37	+1	known	missense	c.1414	p.S472G	1.000	NULL	pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	ADCY2	HGNC	ENSG00000078295	tier1	-	-	84	0	0.00	34	11	24.44
ADTRP	0	genome.wustl.edu	37	6	11714640	11714641	+	RNA	DEL	AA	AA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	11714640	11714641	AA	-	DEL	ADTRP	ENST00000512139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ADTRP	HGNC	ENSG00000111863	tier1			25	0	0.00	19	6	24.00
AFF1	0	genome.wustl.edu	37	4	87968676	87968676	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	87968676	87968676	A	-	DEL	AFF1	ENST00000395146	human	ensembl	74_37	+1	known	frame_shift_del	c.989	p.T332fs	0.967	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF1	HGNC	ENSG00000172493	tier1			85	0	0.00	78	31	28.44
AHNAK	0	genome.wustl.edu	37	11	62299320	62299320	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	62299320	62299320	C	T	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.2569	p.A857T	0.998	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	317	0	0.00	218	79	26.42
ALAS2	0	genome.wustl.edu	37	X	55042055	55042055	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	55042055	55042055	C	T	SNP	ALAS2	ENST00000330807	human	ensembl	74_37	-1	known	missense	c.1124	p.R375H	1.000	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	tier1	-	-	85	0	0.00	57	20	25.97
ALMS1	0	genome.wustl.edu	37	2	73678745	73678745	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	73678745	73678745	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	74_37	+1	known	silent	c.5088	p.P1696	0.001	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	tier1	-	-	128	0	0.00	100	41	29.08
ALX4	0	genome.wustl.edu	37	11	44296999	44296999	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	44296999	44296999	G	A	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	silent	c.676	p.L226	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850	tier1	-	-	226	0	0.00	161	55	25.46
AMER1	0	genome.wustl.edu	37	X	63413009	63413009	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	63413009	63413009	T	C	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.158	p.K53R	1.000	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675	tier1	-	-	131	0	0.00	61	35	36.46
ANAPC1	0	genome.wustl.edu	37	2	112614257	112614258	+	Splice_Site	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	112614257	112614258	-	T	INS	ANAPC1	ENST00000341068	human	ensembl	74_37	-1	known	splice_site_ins	c.1450-2_1450-1	e12-1	0.994:0.992	-	-	-	no_errors	ANAPC1	HGNC	ENSG00000153107	tier1			43	0	0.00	44	5	10.20
ANGPT1	0	genome.wustl.edu	37	8	108348406	108348406	+	Nonsense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	108348406	108348406	C	A	SNP	ANGPT1	ENST00000517746	human	ensembl	74_37	-1	known	nonsense	c.547	p.E183*	1.000	NULL	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	ANGPT1	HGNC	ENSG00000154188	tier1	-	-	69	0	0.00	51	19	27.14
ANKMY2	0	genome.wustl.edu	37	7	16685304	16685304	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	16685304	16685304	G	A	SNP	ANKMY2	ENST00000421746	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ANKMY2	HGNC	ENSG00000106524	tier1	-	-	18	0	0.00	12	6	33.33
ANKRD11	0	genome.wustl.edu	37	16	89351056	89351057	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	89351056	89351057	-	T	INS	ANKRD11	ENST00000301030	human	ensembl	74_37	-1	known	frame_shift_ins	c.1894_1893	p.H631fs	1.000:1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD11	HGNC	ENSG00000167522	tier1			130	0	0.00	92	24	20.69
ANKRD12	0	genome.wustl.edu	37	18	9257340	9257340	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	9257340	9257340	C	T	SNP	ANKRD12	ENST00000262126	human	ensembl	74_37	+1	known	missense	c.4075	p.L1359F	0.902	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD12	HGNC	ENSG00000101745	tier1	-	-	100	0	0.00	76	28	26.92
ANKRD27	0	genome.wustl.edu	37	19	33140670	33140670	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	33140670	33140670	G	T	SNP	ANKRD27	ENST00000306065	human	ensembl	74_37	-1	known	nonsense	c.131	p.S44*	0.094	NULL	pfam_Ankyrin_rpt,pfam_VPS9,superfamily_Ankyrin_rpt-contain_dom,smart_VPS9_subgr,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_VPS9,prints_Ankyrin_rpt	-	no_errors	ANKRD27	HGNC	ENSG00000105186	tier1	-	-	213	0	0.00	131	74	36.10
ANKRD30BL	0	genome.wustl.edu	37	2	132911178	132911178	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	132911178	132911178	G	A	SNP	ANKRD30BL	ENST00000295181	human	ensembl	74_37	-1	known	missense	c.704	p.T235I	0.001	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	tier1	-	-	29	0	0.00	22	4	15.38
ANO3	0	genome.wustl.edu	37	11	26655759	26655759	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	26655759	26655759	C	G	SNP	ANO3	ENST00000256737	human	ensembl	74_37	+1	known	missense	c.1882	p.R628G	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO3	HGNC	ENSG00000134343	tier1	-	-	31	0	0.00	20	11	35.48
ANO9	0	genome.wustl.edu	37	11	428597	428597	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	428597	428597	G	A	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	missense	c.1063	p.R355C	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	tier1	-	-	54	0	0.00	43	14	24.14
AP3B1	0	genome.wustl.edu	37	5	77334907	77334907	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	77334907	77334907	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.2769	p.K923fs	0.419	pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842	tier1			83	0	0.00	62	20	24.39
AP3B1	0	genome.wustl.edu	37	5	77424993	77424993	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	77424993	77424993	T	-	DEL	AP3B1	ENST00000255194	human	ensembl	74_37	-1	known	frame_shift_del	c.1789	p.I597fs	1.000	superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	-	no_errors	AP3B1	HGNC	ENSG00000132842	tier1			71	0	0.00	44	23	34.33
APBA2	0	genome.wustl.edu	37	15	29346255	29346255	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	29346255	29346255	C	T	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.168	p.P56	0.831	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	tier1	-	-	72	0	0.00	57	13	18.57
APBA2	0	genome.wustl.edu	37	15	29409285	29409285	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	29409285	29409285	C	T	SNP	APBA2	ENST00000558259	human	ensembl	74_37	+1	known	silent	c.2199	p.P733	0.852	superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA2	HGNC	ENSG00000034053	tier1	-	-	84	0	0.00	55	17	23.61
APCDD1	0	genome.wustl.edu	37	18	10487787	10487787	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	10487787	10487787	G	T	SNP	APCDD1	ENST00000355285	human	ensembl	74_37	+1	known	missense	c.1297	p.G433W	1.000	NULL	NULL	-	no_errors	APCDD1	HGNC	ENSG00000154856	tier1	-	-	59	0	0.00	46	23	33.33
AQP6	0	genome.wustl.edu	37	12	50367278	50367278	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	50367278	50367278	C	T	SNP	AQP6	ENST00000315520	human	ensembl	74_37	+1	known	silent	c.322	p.L108	1.000	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_6,tigrfam_MIP	-	no_errors	AQP6	HGNC	ENSG00000086159	tier1	-	-	37	0	0.00	26	11	29.73
ARAF	0	genome.wustl.edu	37	X	47426415	47426415	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	47426415	47426415	C	-	DEL	ARAF	ENST00000377045	human	ensembl	74_37	+1	known	frame_shift_del	c.758	p.R255fs	0.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Raf-like_ras-bd,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,smart_Raf-like_ras-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Raf-like_ras-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_DAG/PE-bd	-	no_errors	ARAF	HGNC	ENSG00000078061	tier1			26	0	0.00	29	7	19.44
AREG	0	genome.wustl.edu	37	4	75312298	75312298	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	75312298	75312298	C	T	SNP	AREG	ENST00000264487	human	ensembl	74_37	+1	known	missense	c.109	p.R37C	0.016	NULL	pfscan_EG-like_dom	-	no_errors	AREG	HGNC	ENSG00000109321	tier1	-	-	8	0	0.00	4	6	60.00
AREGB	0	genome.wustl.edu	37	4	75482053	75482053	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	75482053	75482053	C	T	SNP	AREGB	ENST00000380846	human	ensembl	74_37	+1	known	missense	c.109	p.R37C	0.128	NULL	pfscan_EG-like_dom	-	no_errors	AREGB	HGNC	ENSG00000205595	tier1	-	-	144	0	0.00	99	50	33.56
ARFGAP2	0	genome.wustl.edu	37	11	47196853	47196853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	47196853	47196853	A	-	DEL	ARFGAP2	ENST00000524782	human	ensembl	74_37	-1	known	frame_shift_del	c.276	p.R93fs	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ARFGAP2	HGNC	ENSG00000149182	tier1			126	0	0.00	49	58	54.21
ARHGAP29	0	genome.wustl.edu	37	1	94640231	94640231	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	94640231	94640231	G	A	SNP	ARHGAP29	ENST00000260526	human	ensembl	74_37	-1	known	missense	c.2980	p.P994S	0.001	NULL	pfam_RhoGAP_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	tier1	-	-	148	0	0.00	101	40	28.37
ARHGEF4	0	genome.wustl.edu	37	2	131797694	131797694	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	131797694	131797694	C	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	74_37	+1	known	missense	c.853	p.R285W	1.000	superfamily_DH-domain,superfamily_SH3_domain,pfscan_DH-domain	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	tier1	-	-	25	0	0.00	13	8	38.10
ARID1A	0	genome.wustl.edu	37	1	27059167	27059167	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	27059167	27059167	G	T	SNP	ARID1A	ENST00000324856	human	ensembl	74_37	+1	known	nonsense	c.1804	p.E602*	1.000	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1A	HGNC	ENSG00000117713	tier1	-	-	101	0	0.00	52	26	33.33
ARID4A	0	genome.wustl.edu	37	14	58818282	58818282	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	58818282	58818282	G	A	SNP	ARID4A	ENST00000553355	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ARID4A	HGNC	ENSG00000032219	tier1	-	-	14	0	0.00	7	5	41.67
ARL15	0	genome.wustl.edu	37	5	53606269	53606269	+	Missense_Mutation	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	53606269	53606269	T	A	SNP	ARL15	ENST00000504924	human	ensembl	74_37	-1	known	missense	c.41	p.D14V	1.000	smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_MIRO-like,pfam_Small_GTPase,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR	-	no_errors	ARL15	HGNC	ENSG00000185305	tier1	-	-	12	0	0.00	4	4	50.00
ARRDC2	0	genome.wustl.edu	37	19	18120717	18120717	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	18120717	18120717	G	A	SNP	ARRDC2	ENST00000222250	human	ensembl	74_37	+1	known	missense	c.718	p.V240M	1.000	pfam_Arrestin_C-like,superfamily_Ig_E-set	pfam_Arrestin-like_N,pfam_Arrestin_C-like,superfamily_Ig_E-set	-	no_errors	ARRDC2	HGNC	ENSG00000105643	tier1	-	-	44	0	0.00	33	13	28.26
ARSD	0	genome.wustl.edu	37	X	2838724	2838724	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	2838724	2838724	G	A	SNP	ARSD	ENST00000381154	human	ensembl	74_37	-1	known	silent	c.357	p.N119	0.060	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSD	HGNC	ENSG00000006756	tier1	rs201773531	-	53	0	0.00	51	15	22.73
ASH1L	0	genome.wustl.edu	37	1	155349914	155349915	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	155349914	155349915	-	A	INS	ASH1L	ENST00000368346	human	ensembl	74_37	-1	known	frame_shift_ins	c.6112_6111	p.V2037fs	0.075:0.790	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	tier1			62	0	0.00	31	6	16.22
ASTE1	0	genome.wustl.edu	37	3	130733047	130733049	+	In_Frame_Del	DEL	TTT	TTT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	130733047	130733049	TTT	-	DEL	ASTE1	ENST00000264992	human	ensembl	74_37	-1	known	in_frame_del	c.1894_1892	p.K631in_frame_del	0.014:0.001:0.000	NULL	pfam_XPG_DNA_repair_N	-	no_errors	ASTE1	HGNC	ENSG00000034533	tier1			78	0	0.00	46	19	29.23
ATG14	0	genome.wustl.edu	37	14	55847308	55847308	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	55847308	55847308	G	A	SNP	ATG14	ENST00000247178	human	ensembl	74_37	-1	known	silent	c.978	p.P326	1.000	pfam_UV_resistance/autophagy_Atg14	pfam_UV_resistance/autophagy_Atg14	-	no_errors	ATG14	HGNC	ENSG00000126775	tier1	-	-	66	0	0.00	40	25	38.46
ATG2A	0	genome.wustl.edu	37	11	64662563	64662563	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64662563	64662563	G	A	SNP	ATG2A	ENST00000421419	human	ensembl	74_37	-1	known	missense	c.5705	p.P1902L	0.999	pfam_Autophagy-rel_C	pfam_Autophagy-rel_C	-	no_errors	ATG2A	HGNC	ENSG00000110046	tier1	-	-	72	0	0.00	69	13	15.85
ATP1A1	0	genome.wustl.edu	37	1	116936320	116936320	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	116936320	116936320	G	-	DEL	ATP1A1	ENST00000295598	human	ensembl	74_37	+1	known	frame_shift_del	c.1635	p.G547fs	1.000	pfam_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A1	HGNC	ENSG00000163399	tier1			42	0	0.00	29	10	25.64
ATP2B4	0	genome.wustl.edu	37	1	203669952	203669952	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	203669952	203669952	C	T	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.802	p.R268W	0.993	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	-	-	84	0	0.00	49	4	7.55
ATP8A2	0	genome.wustl.edu	37	13	26125597	26125597	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	26125597	26125597	G	A	SNP	ATP8A2	ENST00000381655	human	ensembl	74_37	+1	known	nonsense	c.1013	p.W338*	1.000	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8A2	HGNC	ENSG00000132932	tier1	-	-	45	0	0.00	35	12	25.53
ATP8B2	0	genome.wustl.edu	37	1	154321529	154321529	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	154321529	154321529	C	T	SNP	ATP8B2	ENST00000368489	human	ensembl	74_37	+1	known	missense	c.3607	p.R1203C	1.000	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B2	HGNC	ENSG00000143515	tier1	-	-	39	0	0.00	23	16	41.03
ATP8B3	0	genome.wustl.edu	37	19	1788970	1788970	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	1788970	1788970	A	G	SNP	ATP8B3	ENST00000539485	human	ensembl	74_37	-1	known	missense	c.3025	p.Y1009H	1.000	tigrfam_Cation_transp_P_typ_ATPase	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP8B3	HGNC	ENSG00000130270	tier1	-	-	15	0	0.00	19	12	38.71
ATPAF1	0	genome.wustl.edu	37	1	47101516	47101516	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	47101516	47101516	T	C	SNP	ATPAF1	ENST00000576409	human	ensembl	74_37	-1	known	missense	c.988	p.I330V	1.000	pfam_ATP11	pfam_ATP11	-	no_errors	ATPAF1	HGNC	ENSG00000123472	tier1	-	-	246	0	0.00	156	79	33.62
ATRX	0	genome.wustl.edu	37	X	76776390	76776390	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	76776390	76776390	T	C	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.7076	p.K2359R	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	104	0	0.00	62	31	33.33
BAI3	0	genome.wustl.edu	37	6	70098781	70098782	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	70098781	70098782	-	A	INS	BAI3	ENST00000370598	human	ensembl	74_37	+1	known	frame_shift_ins	c.4567_4568	p.*1524fs	1.000:0.977	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_Thrombospondin_1_rpt,pfam_GPS_dom,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_Thrombospondin_1_rpt,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_brain-spec_angio_inhib,prints_GPCR_2_secretin-like	-	no_errors	BAI3	HGNC	ENSG00000135298	tier1			35	0	0.00	28	6	17.65
BATF2	0	genome.wustl.edu	37	11	64756881	64756881	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64756881	64756881	C	T	SNP	BATF2	ENST00000301887	human	ensembl	74_37	-1	known	missense	c.545	p.G182D	0.006	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062	tier1	-	-	40	0	0.00	31	7	18.42
BATF2	0	genome.wustl.edu	37	11	64756969	64756969	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64756969	64756969	G	-	DEL	BATF2	ENST00000301887	human	ensembl	74_37	-1	known	frame_shift_del	c.457	p.L153fs	0.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	BATF2	HGNC	ENSG00000168062	tier1			17	0	0.00	11	7	38.89
BAZ2B	0	genome.wustl.edu	37	2	160304785	160304785	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	160304785	160304785	G	A	SNP	BAZ2B	ENST00000392783	human	ensembl	74_37	-1	known	missense	c.470	p.S157L	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,superfamily_ARM-type_fold,smart_Methyl_CpG_DNA-bd,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2B	HGNC	ENSG00000123636	tier1	-	-	80	0	0.00	69	18	20.69
BCOR	0	genome.wustl.edu	37	X	39913253	39913253	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	39913253	39913253	G	-	DEL	BCOR	ENST00000378444	human	ensembl	74_37	-1	known	frame_shift_del	c.4862	p.P1621fs	0.994	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	tier1			52	0	0.00	29	16	35.56
BDH1	0	genome.wustl.edu	37	3	197239113	197239113	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	197239113	197239113	G	-	DEL	BDH1	ENST00000358186	human	ensembl	74_37	-1	known	frame_shift_del	c.685	p.L229fs	0.995	prints_Glc/ribitol_DH,prints_DHB_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	BDH1	HGNC	ENSG00000161267	tier1			56	0	0.00	48	5	9.43
BEST3	0	genome.wustl.edu	37	12	70049361	70049362	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	70049361	70049362	-	G	INS	BEST3	ENST00000330891	human	ensembl	74_37	-1	known	frame_shift_ins	c.1333_1332	p.R444fs	0.001:0.001	NULL	pfam_Bestrophin/UPF0187	-	no_errors	BEST3	HGNC	ENSG00000127325	tier1			56	0	0.00	54	19	26.03
BMP1	0	genome.wustl.edu	37	8	22064992	22064992	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	22064992	22064992	G	A	SNP	BMP1	ENST00000306385	human	ensembl	74_37	+1	known	silent	c.2538	p.S846	0.014	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	BMP1	HGNC	ENSG00000168487	tier1	-	-	47	0	0.00	71	20	21.98
BMP2K	0	genome.wustl.edu	37	4	79831985	79831987	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	79831985	79831987	GAA	-	DEL	BMP2K	ENST00000335016	human	ensembl	74_37	+1	known	in_frame_del	c.2284_2286	p.E763in_frame_del	1.000:1.000:0.944	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	BMP2K	HGNC	ENSG00000138756	tier1			44	0	0.00	46	13	22.03
BNC1	0	genome.wustl.edu	37	15	83932760	83932760	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	83932760	83932760	T	C	SNP	BNC1	ENST00000345382	human	ensembl	74_37	-1	known	missense	c.1243	p.M415V	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BNC1	HGNC	ENSG00000169594	tier1	-	-	124	0	0.00	85	38	30.89
BNIP3P1	0	genome.wustl.edu	37	14	28733889	28733890	+	RNA	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	28733889	28733890	-	A	INS	BNIP3P1	ENST00000550043	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.930	-	-	-	no_errors	BNIP3P1	HGNC	ENSG00000197358	tier1			97	0	0.00	70	10	12.50
BOC	0	genome.wustl.edu	37	3	113002318	113002318	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	113002318	113002318	C	T	SNP	BOC	ENST00000273395	human	ensembl	74_37	+1	known	missense	c.2495	p.P832L	0.219	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	BOC	HGNC	ENSG00000144857	tier1	-	-	134	0	0.00	81	43	34.68
BRINP2	0	genome.wustl.edu	37	1	177242646	177242646	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	177242646	177242646	C	A	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	missense	c.692	p.P231H	1.000	smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	67	0	0.00	26	12	31.58
BSCL2	0	genome.wustl.edu	37	11	62472899	62472899	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	62472899	62472899	A	T	SNP	BSCL2	ENST00000360796	human	ensembl	74_37	-1	known	missense	c.278	p.L93Q	0.997	NULL	pfam_Adipose-reg_protein_Seipin	-	no_errors	BSCL2	HGNC	ENSG00000168000	tier1	-	-	20	0	0.00	21	7	25.00
BSN	0	genome.wustl.edu	37	3	49690300	49690300	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	49690300	49690300	C	-	DEL	BSN	ENST00000296452	human	ensembl	74_37	+1	known	frame_shift_del	c.3311	p.P1105fs	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	tier1			109	0	0.00	77	38	33.04
BTBD11	0	genome.wustl.edu	37	12	108045467	108045467	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	108045467	108045467	A	T	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.3008	p.K1003M	1.000	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136				29	0	0.00	28	3	9.68
BTBD7	0	genome.wustl.edu	37	14	93760638	93760638	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	93760638	93760638	T	C	SNP	BTBD7	ENST00000334746	human	ensembl	74_37	-1	known	missense	c.728	p.Y243C	1.000	smart_BTB/POZ-like	pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD7	HGNC	ENSG00000011114	tier1	-	-	81	0	0.00	73	37	33.64
C10orf137	0	genome.wustl.edu	37	10	127452032	127452032	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	127452032	127452032	C	T	SNP	C10orf137	ENST00000356792	human	ensembl	74_37	+1	known	silent	c.3708	p.A1236	0.000	NULL	NULL	-	no_errors	C10orf137	HGNC	ENSG00000107938	tier1	-	-	34	0	0.00	29	10	25.64
C11orf63	0	genome.wustl.edu	37	11	122805598	122805598	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	122805598	122805598	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	silent	c.1449	p.Q483	0.957	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	tier1	-	-	113	0	0.00	84	37	30.58
C11orf63	0	genome.wustl.edu	37	11	122827255	122827255	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	122827255	122827255	G	A	SNP	C11orf63	ENST00000227349	human	ensembl	74_37	+1	known	missense	c.1981	p.G661R	1.000	NULL	NULL	-	no_errors	C11orf63	HGNC	ENSG00000109944	tier1	rs61748621	-	79	0	0.00	41	31	43.06
C11orf70	0	genome.wustl.edu	37	11	101937222	101937222	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	101937222	101937222	A	G	SNP	C11orf70	ENST00000434758	human	ensembl	74_37	+1	known	missense	c.275	p.E92G	1.000	NULL	NULL	-	no_errors	C11orf70	HGNC	ENSG00000137691	tier1	-	-	158	0	0.00	95	39	29.10
C12orf56	0	genome.wustl.edu	37	12	64784342	64784342	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	64784342	64784342	C	T	SNP	C12orf56	ENST00000333722	human	ensembl	74_37	-1	known	missense	c.4	p.A2T	1.000	NULL	NULL	-	no_errors	C12orf56	HGNC	ENSG00000185306	tier1	-	-	19	0	0.00	12	4	25.00
C16orf92	0	genome.wustl.edu	37	16	30035386	30035386	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	30035386	30035386	T	G	SNP	C16orf92	ENST00000300575	human	ensembl	74_37	+1	known	missense	c.356	p.L119R	0.674	NULL	NULL	-	no_errors	C16orf92	HGNC	ENSG00000167194	tier1	-	-	99	0	0.00	55	8	12.70
C19orf12	0	genome.wustl.edu	37	19	30193879	30193879	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	30193879	30193879	C	-	DEL	C19orf12	ENST00000392278	human	ensembl	74_37	-1	known	frame_shift_del	c.199	p.A67fs	0.813	NULL	NULL	-	no_errors	C19orf12	HGNC	ENSG00000131943	tier1			101	0	0.00	68	33	32.67
C19orf25	0	genome.wustl.edu	37	19	1475044	1475044	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	1475044	1475044	G	A	SNP	C19orf25	ENST00000436106	human	ensembl	74_37	-1	known	missense	c.344	p.A115V	0.001	NULL	NULL	-	no_errors	C19orf25	HGNC	ENSG00000119559	tier1	-	-	13	0	0.00	2	4	66.67
C1QTNF5	0	genome.wustl.edu	37	11	119210189	119210190	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	119210189	119210190	-	C	INS	C1QTNF5	ENST00000445041	human	ensembl	74_37	-1	known	frame_shift_ins	c.584_583	p.A195fs	1.000:0.976	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	pfam_C1q,pfam_Collagen,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	C1QTNF5	HGNC	ENSG00000223953	tier1			55	0	0.00	44	8	15.38
C1orf177	0	genome.wustl.edu	37	1	55279566	55279566	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	55279566	55279566	T	-	DEL	C1orf177	ENST00000371273	human	ensembl	74_37	+1	known	frame_shift_del	c.842	p.S283fs	0.010	NULL	NULL	-	no_errors	C1orf177	HGNC	ENSG00000162398	tier1			128	0	0.00	72	17	19.10
C3	0	genome.wustl.edu	37	19	6697423	6697423	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	6697423	6697423	C	T	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.2728	p.V910M	1.000	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730	tier1	-	-	43	0	0.00	34	14	29.17
C6orf58	0	genome.wustl.edu	37	6	127898626	127898626	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	127898626	127898626	G	T	SNP	C6orf58	ENST00000329722	human	ensembl	74_37	+1	known	missense	c.296	p.R99M	0.000	pfam_DUF781	pfam_DUF781	-	no_errors	C6orf58	HGNC	ENSG00000184530	tier1	-	-	134	0	0.00	95	35	26.92
C6orf89	0	genome.wustl.edu	37	6	36867370	36867371	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	36867370	36867371	-	C	INS	C6orf89	ENST00000355190	human	ensembl	74_37	+1	known	frame_shift_ins	c.171_172	p.Q60fs	0.997:0.991	NULL	NULL	-	no_errors	C6orf89	HGNC	ENSG00000198663	tier1			59	0	0.00	50	18	26.47
C7orf66	0	genome.wustl.edu	37	7	108524151	108524151	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	108524151	108524151	T	C	SNP	C7orf66	ENST00000379007	human	ensembl	74_37	-1	putative	missense	c.261	p.I87M	0.006	NULL	NULL	-	no_errors	C7orf66	HGNC	ENSG00000205174	tier1	-	-	130	0	0.00	85	38	30.89
C8A	0	genome.wustl.edu	37	1	57340751	57340751	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	57340751	57340751	C	T	SNP	C8A	ENST00000361249	human	ensembl	74_37	+1	known	nonsense	c.301	p.Q101*	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,prints_MAC_perforin	pfam_MACPF,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,pfscan_LDrepeatLR_classA_rpt,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C8A	HGNC	ENSG00000157131	tier1	-	-	38	0	0.00	17	7	29.17
C9orf129	0	genome.wustl.edu	37	9	96097671	96097671	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	96097671	96097671	C	A	SNP	C9orf129	ENST00000375419	human	ensembl	74_37	-1	known	missense	c.350	p.S117I	0.985	NULL	NULL	-	no_errors	C9orf129	HGNC	ENSG00000204352	tier1	-	-	15	0	0.00	11	5	31.25
CACNG3	0	genome.wustl.edu	37	16	24372788	24372788	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	24372788	24372788	C	T	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	silent	c.552	p.F184	1.000	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	tier1	-	-	173	0	0.00	115	51	30.72
CAPN1	0	genome.wustl.edu	37	11	64973997	64973997	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64973997	64973997	C	T	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	missense	c.1417	p.R473C	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	tier1	-	-	124	0	0.00	99	32	24.06
CCAR2	0	genome.wustl.edu	37	8	22475212	22475212	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	22475212	22475212	G	A	SNP	CCAR2	ENST00000308511	human	ensembl	74_37	+1	known	missense	c.1994	p.G665E	1.000	NULL	superfamily_NA-bd_OB-fold	-	no_errors	CCAR2	HGNC	ENSG00000158941	tier1	rs201118681	-	114	0	0.00	109	36	24.83
CCDC103	0	genome.wustl.edu	37	17	42980014	42980015	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	42980014	42980015	AG	-	DEL	CCDC103	ENST00000410006	human	ensembl	74_37	+1	known	frame_shift_del	c.558_559	p.S190fs	0.000:0.999	NULL	NULL	-	no_errors	CCDC103	HGNC	ENSG00000167131	tier1			50	0	0.00	35	4	10.26
CCDC107	0	genome.wustl.edu	37	9	35660930	35660931	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	35660930	35660931	CA	-	DEL	CCDC107	ENST00000426546	human	ensembl	74_37	+1	known	frame_shift_del	c.598_599	p.T201fs	0.000:0.004	NULL	NULL	-	no_errors	CCDC107	HGNC	ENSG00000159884	tier1			112	0	0.00	84	25	22.94
CCDC108	0	genome.wustl.edu	37	2	219895874	219895874	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	219895874	219895874	G	A	SNP	CCDC108	ENST00000341552	human	ensembl	74_37	-1	known	silent	c.969	p.Y323	0.479	NULL	superfamily_PapD-like,pfscan_MSP_dom	-	no_errors	CCDC108	HGNC	ENSG00000181378	tier1	-	-	10	0	0.00	3	6	66.67
CCDC11	0	genome.wustl.edu	37	18	47769415	47769415	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	47769415	47769415	C	A	SNP	CCDC11	ENST00000398545	human	ensembl	74_37	-1	known	missense	c.1068	p.Q356H	0.933	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361	tier1	-	-	190	0	0.00	128	33	20.50
CCDC124	0	genome.wustl.edu	37	19	18054453	18054455	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	18054453	18054455	AAG	-	DEL	CCDC124	ENST00000445755	human	ensembl	74_37	+1	known	in_frame_del	c.601_603	p.K202in_frame_del	1.000:1.000:1.000	pfam_DUF1014,superfamily_HMG_box_dom	pfam_DUF1014,superfamily_HMG_box_dom	-	no_errors	CCDC124	HGNC	ENSG00000007080	tier1			23	0	0.00	19	5	20.83
CCDC39	0	genome.wustl.edu	37	3	180377345	180377345	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	180377345	180377345	T	C	SNP	CCDC39	ENST00000442201	human	ensembl	74_37	-1	known	silent	c.633	p.Q211	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC39	HGNC	ENSG00000145075	tier1	-	-	85	0	0.00	68	23	25.27
CCDC43	0	genome.wustl.edu	37	17	42756253	42756253	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	42756253	42756253	T	-	DEL	CCDC43	ENST00000315286	human	ensembl	74_37	-1	known	frame_shift_del	c.646	p.R216fs	1.000	NULL	NULL	-	no_errors	CCDC43	HGNC	ENSG00000180329	tier1			24	0	0.00	16	8	33.33
CCDC74A	0	genome.wustl.edu	37	2	132290601	132290601	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	132290601	132290601	G	A	SNP	CCDC74A	ENST00000295171	human	ensembl	74_37	+1	known	silent	c.966	p.T322	0.162	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040				110	0	0.00	89	12	11.76
CCL20	0	genome.wustl.edu	37	2	228680154	228680156	+	RNA	DEL	TTT	TTT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TTT	TTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	228680154	228680156	TTT	-	DEL	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.011:0.011	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	tier1			101	0	0.00	62	19	23.46
CCSAP	0	genome.wustl.edu	37	1	229460857	229460857	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	229460857	229460857	A	-	DEL	CCSAP	ENST00000483092	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CCSAP	HGNC	ENSG00000154429	tier1			20	0	0.00	8	8	50.00
CD248	0	genome.wustl.edu	37	11	66082679	66082679	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	66082679	66082679	G	T	SNP	CD248	ENST00000311330	human	ensembl	74_37	-1	known	missense	c.1820	p.S607Y	0.036	NULL	pfam_C-type_lectin,pfam_EGF-like_Ca-bd_dom,superfamily_C-type_lectin_fold,smart_C-type_lectin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_C-type_lectin	-	no_errors	CD248	HGNC	ENSG00000174807	tier1	-	-	83	0	0.00	111	7	5.93
CD2AP	0	genome.wustl.edu	37	6	47573986	47573986	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	47573986	47573986	G	T	SNP	CD2AP	ENST00000359314	human	ensembl	74_37	+1	known	missense	c.1503	p.L501F	0.988	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	CD2AP	HGNC	ENSG00000198087	tier1	-	-	67	0	0.00	46	20	30.30
CD300A	0	genome.wustl.edu	37	17	72477461	72477461	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	72477461	72477461	A	C	SNP	CD300A	ENST00000360141	human	ensembl	74_37	+1	known	missense	c.662	p.K221T	0.010	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD300A	HGNC	ENSG00000167851	tier1	-	-	74	0	0.00	36	26	41.94
CD8BP	0	genome.wustl.edu	37	2	107107579	107107579	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	107107579	107107579	G	A	SNP	CD8BP	ENST00000416057	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD8BP	HGNC	ENSG00000254126	tier1	-	-	81	0	0.00	53	14	20.90
CDC42BPA	0	genome.wustl.edu	37	1	227222417	227222417	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	227222417	227222417	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	74_37	-1	known	missense	c.3310	p.D1104N	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_CRIB_dom,pfscan_CRIB_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	tier1	-	-	93	0	0.00	66	27	29.03
CDC42EP4	0	genome.wustl.edu	37	17	71281908	71281908	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	71281908	71281908	G	A	SNP	CDC42EP4	ENST00000335793	human	ensembl	74_37	-1	known	silent	c.732	p.G244	0.015	NULL	pfam_CRIB_dom,smart_CRIB_dom,pfscan_CRIB_dom	-	no_errors	CDC42EP4	HGNC	ENSG00000179604	tier1	-	-	34	0	0.00	30	11	26.83
CDH3	0	genome.wustl.edu	37	16	68712089	68712089	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	68712089	68712089	G	A	SNP	CDH3	ENST00000264012	human	ensembl	74_37	+1	known	missense	c.299	p.R100H	0.230	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	tier1	-	-	70	0	0.00	57	17	22.97
CDK14	0	genome.wustl.edu	37	7	90741929	90741929	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	90741929	90741929	G	A	SNP	CDK14	ENST00000380050	human	ensembl	74_37	+1	known	silent	c.1227	p.S409	0.021	pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK14	HGNC	ENSG00000058091	tier1	rs151182341	-	90	0	0.00	58	33	36.26
CDK2AP2	0	genome.wustl.edu	37	11	67275092	67275092	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	67275092	67275092	A	C	SNP	CDK2AP2	ENST00000301488	human	ensembl	74_37	-1	known	missense	c.151	p.F51V	1.000	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	pfam_Cyclin-dep_kinase2-assoc_pr,pirsf_CDK2-associated_2	-	no_errors	CDK2AP2	HGNC	ENSG00000167797	tier1	-	-	36	0	0.00	47	14	22.95
CDKN2A	0	genome.wustl.edu	37	9	21971139	21971139	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	21971139	21971139	G	A	SNP	CDKN2A	ENST00000361570	human	ensembl	74_37	-1	known	nonsense	c.385	p.R129*	0.000	NULL	pfam_Cyclin_kinase-Inhib_2A	-	no_errors	CDKN2A	HGNC	ENSG00000147889				13	0	0.00	11	4	26.67
CDYL2	0	genome.wustl.edu	37	16	80718955	80718955	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	80718955	80718955	G	A	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	silent	c.96	p.Y32	0.894	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	tier1	-	-	148	0	0.00	75	46	38.02
CELP	0	genome.wustl.edu	37	9	135961815	135961815	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	135961815	135961815	C	T	SNP	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1	-	-	15	0	0.00	6	8	57.14
CEP120	0	genome.wustl.edu	37	5	122725676	122725676	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	122725676	122725676	T	C	SNP	CEP120	ENST00000306467	human	ensembl	74_37	-1	known	silent	c.1197	p.A399	0.937	NULL	pfam_DUF3668,superfamily_C2_dom	-	no_errors	CEP120	HGNC	ENSG00000168944	tier1	-	-	134	0	0.00	63	40	38.83
CEP192	0	genome.wustl.edu	37	18	13055986	13055986	+	Missense_Mutation	SNP	G	G	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	13055986	13055986	G	C	SNP	CEP192	ENST00000506447	human	ensembl	74_37	+1	known	missense	c.3397	p.D1133H	0.000	NULL	NULL	-	no_errors	CEP192	HGNC	ENSG00000101639	tier1	-	-	41	0	0.00	38	14	26.92
CEP57	0	genome.wustl.edu	37	11	95555113	95555113	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	95555113	95555113	A	-	DEL	CEP57	ENST00000325542	human	ensembl	74_37	+1	known	frame_shift_del	c.778	p.K262fs	1.000	pfam_Cep57_MT-bd_dom	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC	ENSG00000166037	tier1			68	0	0.00	49	23	31.94
CEPT1	0	genome.wustl.edu	37	1	111690320	111690320	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	111690320	111690320	A	-	DEL	CEPT1	ENST00000460443	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255	tier1			24	0	0.00	20	8	28.57
CETN2	0	genome.wustl.edu	37	X	151997585	151997585	+	RNA	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	151997585	151997585	T	A	SNP	CETN2	ENST00000493482	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CETN2	HGNC	ENSG00000147400	tier1	-	-	42	0	0.00	20	13	39.39
CFH	0	genome.wustl.edu	37	1	196712585	196712587	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	196712585	196712587	CCT	-	DEL	CFH	ENST00000367429	human	ensembl	74_37	+1	known	in_frame_del	c.3137_3139	p.S1047in_frame_del	0.034:0.141:0.833	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	tier1			109	0	0.00	57	22	27.85
CGRRF1	0	genome.wustl.edu	37	14	54996842	54996842	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	54996842	54996842	T	C	SNP	CGRRF1	ENST00000216420	human	ensembl	74_37	+1	known	missense	c.320	p.L107S	0.689	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	CGRRF1	HGNC	ENSG00000100532	tier1	-	-	57	0	0.00	38	16	29.63
CHD7	0	genome.wustl.edu	37	8	61765877	61765877	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	61765877	61765877	G	T	SNP	CHD7	ENST00000423902	human	ensembl	74_37	+1	known	missense	c.6593	p.G2198V	0.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD7	HGNC	ENSG00000171316	tier1	-	-	14	0	0.00	23	10	30.30
CHD9	0	genome.wustl.edu	37	16	53331043	53331043	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	53331043	53331043	A	G	SNP	CHD9	ENST00000398510	human	ensembl	74_37	+1	known	missense	c.5686	p.R1896G	1.000	NULL	pfam_SNF2_N,pfam_BRK_domain,pfam_Chromo_domain,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD9	HGNC	ENSG00000177200	tier1	-	-	96	0	0.00	58	30	34.09
CHRD	0	genome.wustl.edu	37	3	184102469	184102469	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	184102469	184102469	G	A	SNP	CHRD	ENST00000204604	human	ensembl	74_37	+1	known	missense	c.1585	p.A529T	0.990	pirsf_Chordin	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	tier1	-	-	45	0	0.00	21	7	18.92
CHRNA1	0	genome.wustl.edu	37	2	175618297	175618297	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	175618297	175618297	C	T	SNP	CHRNA1	ENST00000261007	human	ensembl	74_37	-1	known	missense	c.787	p.V263I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel	-	no_errors	CHRNA1	HGNC	ENSG00000138435	tier1	-	-	87	0	0.00	93	6	6.06
CHRNA6	0	genome.wustl.edu	37	8	42620254	42620254	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	42620254	42620254	G	T	SNP	CHRNA6	ENST00000276410	human	ensembl	74_37	-1	known	missense	c.173	p.P58H	0.996	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA6	HGNC	ENSG00000147434	tier1	-	-	120	0	0.00	121	30	19.87
CHST3	0	genome.wustl.edu	37	10	73768065	73768065	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	73768065	73768065	G	A	SNP	CHST3	ENST00000373115	human	ensembl	74_37	+1	known	missense	c.1276	p.E426K	1.000	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST3	HGNC	ENSG00000122863	tier1	-	-	10	0	0.00	5	4	44.44
CIZ1	0	genome.wustl.edu	37	9	130941584	130941584	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	130941584	130941584	T	C	SNP	CIZ1	ENST00000538431	human	ensembl	74_37	-1	known	missense	c.902	p.E301G	0.751	NULL	pfam_Znf_C2H2_jaz,smart_Znf_U1,smart_Znf_C2H2-like,pfscan_Znf_C2H2_matrin	-	no_errors	CIZ1	HGNC	ENSG00000148337	tier1	-	-	85	0	0.00	64	27	29.67
CLEC16A	0	genome.wustl.edu	37	16	11066812	11066812	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	11066812	11066812	C	T	SNP	CLEC16A	ENST00000409790	human	ensembl	74_37	+1	known	silent	c.622	p.L208	1.000	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	tier1	-	-	30	0	0.00	25	10	28.57
CLPP	0	genome.wustl.edu	37	19	6361916	6361916	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	6361916	6361916	C	T	SNP	CLPP	ENST00000245816	human	ensembl	74_37	+1	known	silent	c.235	p.L79	1.000	pfam_ClpP/TepA,prints_ClpP	pfam_ClpP/TepA,prints_ClpP	-	no_errors	CLPP	HGNC	ENSG00000125656	tier1	-	-	24	0	0.00	9	16	64.00
CLTCL1	0	genome.wustl.edu	37	22	19170946	19170946	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	19170946	19170946	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	74_37	-1	known	missense	c.4784	p.A1595V	1.000	pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	tier1	-	-	39	0	0.00	21	13	38.24
CMYA5	0	genome.wustl.edu	37	5	79025124	79025124	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	79025124	79025124	C	T	SNP	CMYA5	ENST00000446378	human	ensembl	74_37	+1	known	missense	c.536	p.T179M	0.000	NULL	pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3	-	no_errors	CMYA5	HGNC	ENSG00000164309	tier1	-	-	27	0	0.00	18	8	30.77
CNTLN	0	genome.wustl.edu	37	9	17226202	17226203	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	17226202	17226203	-	A	INS	CNTLN	ENST00000380647	human	ensembl	74_37	+1	known	frame_shift_ins	c.451_452	p.Q153fs	1.000:1.000	NULL	superfamily_Prefoldin	-	no_errors	CNTLN	HGNC	ENSG00000044459	tier1			36	0	0.00	34	8	19.05
CNTN3	0	genome.wustl.edu	37	3	74344348	74344348	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	74344348	74344348	A	G	SNP	CNTN3	ENST00000263665	human	ensembl	74_37	-1	known	missense	c.2441	p.L814P	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN3	HGNC	ENSG00000113805	tier1	-	-	94	0	0.00	68	24	26.09
CNTN6	0	genome.wustl.edu	37	3	1320162	1320162	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	1320162	1320162	C	A	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	missense	c.424	p.L142I	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115	tier1	-	-	118	0	0.00	68	39	36.45
CNTN6	0	genome.wustl.edu	37	3	1363415	1363415	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	1363415	1363415	C	T	SNP	CNTN6	ENST00000350110	human	ensembl	74_37	+1	known	silent	c.843	p.I281	0.953	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	CNTN6	HGNC	ENSG00000134115	tier1	-	-	123	0	0.00	77	45	36.89
CNTNAP4	0	genome.wustl.edu	37	16	76495985	76495985	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	76495985	76495985	G	A	SNP	CNTNAP4	ENST00000307431	human	ensembl	74_37	+1	known	missense	c.1463	p.G488D	0.308	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP4	HGNC	ENSG00000152910	tier1	-	-	28	0	0.00	18	12	40.00
CNTRL	0	genome.wustl.edu	37	9	123931890	123931890	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	123931890	123931890	A	G	SNP	CNTRL	ENST00000238341	human	ensembl	74_37	+1	known	silent	c.6072	p.K2024	0.904	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397	tier1	-	-	50	0	0.00	41	15	26.79
COBL	0	genome.wustl.edu	37	7	51095510	51095511	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	51095510	51095511	-	T	INS	COBL	ENST00000395542	human	ensembl	74_37	-1	known	frame_shift_ins	c.3529_3528	p.F1176fs	1.000:0.949	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	tier1			162	0	0.00	75	35	31.82
COL21A1	0	genome.wustl.edu	37	6	55923977	55923977	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	55923977	55923977	G	T	SNP	COL21A1	ENST00000244728	human	ensembl	74_37	-1	known	missense	c.2672	p.P891H	1.000	pfam_Collagen	pfam_Collagen,pfam_VWF_A,superfamily_ConA-like_lec_gl_sf,smart_VWF_A,smart_Laminin_G,pfscan_VWF_A	-	no_errors	COL21A1	HGNC	ENSG00000124749	tier1	-	-	44	0	0.00	22	11	33.33
COL4A3	0	genome.wustl.edu	37	2	228118841	228118841	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	228118841	228118841	A	G	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.779	p.E260G	0.999	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	tier1	-	-	29	0	0.00	29	7	19.44
COL4A5	0	genome.wustl.edu	37	X	107683365	107683365	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	107683365	107683365	C	T	SNP	COL4A5	ENST00000328300	human	ensembl	74_37	+1	known	missense	c.10	p.R4C	0.997	NULL	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A5	HGNC	ENSG00000188153	tier1	-	-	26	0	0.00	20	9	31.03
COL6A2	0	genome.wustl.edu	37	21	47552287	47552287	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	47552287	47552287	G	A	SNP	COL6A2	ENST00000300527	human	ensembl	74_37	+1	known	missense	c.2881	p.A961T	0.169	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A2	HGNC	ENSG00000142173	tier1	-	-	48	0	0.00	40	13	24.53
COPB2	0	genome.wustl.edu	37	3	139092617	139092617	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	139092617	139092617	C	T	SNP	COPB2	ENST00000333188	human	ensembl	74_37	-1	known	missense	c.785	p.R262Q	1.000	pirsf_COPB2,superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pirsf_COPB2,pfam_Coatomer_WD-assoc_reg,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	COPB2	HGNC	ENSG00000184432	tier1	-	-	70	0	0.00	34	19	35.85
COPS4	0	genome.wustl.edu	37	4	83989622	83989622	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	83989622	83989622	A	-	DEL	COPS4	ENST00000264389	human	ensembl	74_37	+1	known	frame_shift_del	c.1034	p.G346fs	1.000	pfam_PCI_dom,smart_PCI_dom	pfam_PCI_dom,smart_PCI_dom	-	no_errors	COPS4	HGNC	ENSG00000138663	tier1			93	0	0.00	61	27	30.68
COQ6	0	genome.wustl.edu	37	14	74422589	74422589	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	74422589	74422589	G	A	SNP	COQ6	ENST00000334571	human	ensembl	74_37	+1	known	missense	c.439	p.V147I	1.000	tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like,tigrfam_UbQ_biosynth_mOase,tigrfam_Ubi_Hdrxlases	-	no_errors	COQ6	HGNC	ENSG00000119723	tier1	-	-	133	0	0.00	85	37	30.08
CPLX3	0	genome.wustl.edu	37	15	75122526	75122526	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	75122526	75122526	G	A	SNP	CPLX3	ENST00000395018	human	ensembl	74_37	+1	known	missense	c.308	p.R103Q	1.000	pfam_Synaphin	pfam_Synaphin	-	no_errors	CPLX3	HGNC	ENSG00000213578	tier1	rs144213956	-	44	0	0.00	30	5	14.29
CPT1C	0	genome.wustl.edu	37	19	50215096	50215096	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	50215096	50215096	G	A	SNP	CPT1C	ENST00000323446	human	ensembl	74_37	+1	known	missense	c.1897	p.A633T	0.998	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1C	HGNC	ENSG00000169169	tier1	-	-	83	0	0.00	29	27	48.21
CRYGA	0	genome.wustl.edu	37	2	209028003	209028003	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	209028003	209028003	G	A	SNP	CRYGA	ENST00000304502	human	ensembl	74_37	-1	known	silent	c.177	p.R59	0.013	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	CRYGA	HGNC	ENSG00000168582	tier1	-	-	54	0	0.00	41	16	28.07
CSE1L	0	genome.wustl.edu	37	20	47700644	47700644	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	47700644	47700644	G	A	SNP	CSE1L	ENST00000262982	human	ensembl	74_37	+1	known	missense	c.1564	p.A522T	1.000	pfam_Cse1,superfamily_ARM-type_fold	pfam_CAS_CSE1_C,pfam_Cse1,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	CSE1L	HGNC	ENSG00000124207	tier1	-	-	65	0	0.00	73	26	26.26
CSF1R	0	genome.wustl.edu	37	5	149447883	149447883	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	149447883	149447883	C	T	SNP	CSF1R	ENST00000286301	human	ensembl	74_37	-1	known	silent	c.1521	p.T507	0.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	CSF1R	HGNC	ENSG00000182578	tier1	-	-	36	0	0.00	28	12	30.00
CSMD1	0	genome.wustl.edu	37	8	2976083	2976083	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	2976083	2976083	G	A	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.6271	p.P2091S	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	83	0	0.00	79	30	27.52
CSMD3	0	genome.wustl.edu	37	8	113697800	113697800	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	113697800	113697800	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.2317	p.D773Y	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	106	0	0.00	72	21	22.58
CSPG4	0	genome.wustl.edu	37	15	75983101	75983101	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	75983101	75983101	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	74_37	-1	known	missense	c.305	p.T102M	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	tier1	-	-	111	0	0.00	45	23	33.82
CSPP1	0	genome.wustl.edu	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	68076631	68076631	A	-	DEL	CSPP1	ENST00000262210	human	ensembl	74_37	+1	known	frame_shift_del	c.2701	p.N903fs	1.000	NULL	NULL	-	no_errors	CSPP1	HGNC	ENSG00000104218	tier1			74	0	0.00	73	15	17.05
CSTF3	0	genome.wustl.edu	37	11	33106697	33106697	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	33106697	33106697	T	G	SNP	CSTF3	ENST00000323959	human	ensembl	74_37	-1	known	missense	c.2090	p.K697T	1.000	NULL	pfam_Suf,smart_HAT	-	no_errors	CSTF3	HGNC	ENSG00000176102				90	0	0.00	92	5	5.15
CTPS1	0	genome.wustl.edu	37	1	41463073	41463073	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	41463073	41463073	C	T	SNP	CTPS1	ENST00000372616	human	ensembl	74_37	+1	known	missense	c.880	p.R294C	0.987	tigrfam_CTP_synthase	pfam_CTP_synthase_N,pfam_GATASE,pfam_Peptidase_C26,superfamily_P-loop_NTPase,tigrfam_CTP_synthase	-	no_errors	CTPS1	HGNC	ENSG00000171793	tier1	-	-	157	0	0.00	79	42	34.71
CUL2	0	genome.wustl.edu	37	10	35351915	35351916	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	35351915	35351916	-	A	INS	CUL2	ENST00000537177	human	ensembl	74_37	-1	known	frame_shift_ins	c.252_251	p.L84fs	1.000:1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL2	HGNC	ENSG00000108094	tier1			46	0	0.00	47	13	21.67
CYP11B1	0	genome.wustl.edu	37	8	143957293	143957293	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	143957293	143957293	G	A	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	missense	c.956	p.T319M	0.992	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	tier1	rs104894068	-	118	0	0.00	124	39	23.93
CYP26A1	0	genome.wustl.edu	37	10	94834243	94834243	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	94834243	94834243	G	A	SNP	CYP26A1	ENST00000224356	human	ensembl	74_37	+1	known	missense	c.368	p.G123D	1.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP26A1	HGNC	ENSG00000095596	tier1	-	-	240	0	0.00	150	77	33.92
DCAF12L1	0	genome.wustl.edu	37	X	125686484	125686484	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	125686484	125686484	C	T	SNP	DCAF12L1	ENST00000371126	human	ensembl	74_37	-1	known	silent	c.108	p.P36	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF12L1	HGNC	ENSG00000198889	tier1	-	-	60	0	0.00	50	18	26.47
DCAF13	0	genome.wustl.edu	37	8	104439487	104439487	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	104439487	104439487	T	-	DEL	DCAF13	ENST00000519682	human	ensembl	74_37	+1	putative	frame_shift_del	c.619	p.F209fs	0.001	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF13	HGNC	ENSG00000164934	tier1			62	0	0.00	50	10	16.67
DCAF8L2	0	genome.wustl.edu	37	X	27766119	27766119	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	27766119	27766119	G	A	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	silent	c.1107	p.L369	0.966	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	40	0	0.00	38	15	28.30
DCAKD	0	genome.wustl.edu	37	17	43102057	43102057	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	43102057	43102057	C	T	SNP	DCAKD	ENST00000342350	human	ensembl	74_37	-1	known	missense	c.440	p.R147Q	1.000	pfam_Depp_CoAkinase,superfamily_P-loop_NTPase,tigrfam_Depp_CoAkinase	pfam_Depp_CoAkinase,superfamily_P-loop_NTPase,tigrfam_Depp_CoAkinase	-	no_errors	DCAKD	HGNC	ENSG00000172992	tier1	-	-	99	0	0.00	72	23	24.21
DCST2	0	genome.wustl.edu	37	1	154998825	154998825	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	154998825	154998825	G	A	SNP	DCST2	ENST00000368424	human	ensembl	74_37	-1	known	missense	c.1564	p.R522W	0.990	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	DCST2	HGNC	ENSG00000163354	tier1	rs4845403	-	80	0	0.00	43	22	33.33
DCX	0	genome.wustl.edu	37	X	110555930	110555930	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	110555930	110555930	G	-	DEL	DCX	ENST00000338081	human	ensembl	74_37	-1	known	frame_shift_del	c.1209	p.K404fs	1.000	pirsf_Doublecortin_chordata	pfam_Doublecortin_dom,smart_Doublecortin_dom,pirsf_Doublecortin_chordata,pfscan_Doublecortin_dom	-	no_errors	DCX	HGNC	ENSG00000077279	tier1			53	0	0.00	42	13	23.64
DDC	0	genome.wustl.edu	37	7	50531075	50531075	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	50531075	50531075	T	-	DEL	DDC	ENST00000357936	human	ensembl	74_37	-1	known	frame_shift_del	c.1297	p.I433fs	1.000	superfamily_PyrdxlP-dep_Trfase	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437	tier1			60	0	0.00	30	16	34.78
DDX52	0	genome.wustl.edu	37	17	36002277	36002278	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	36002277	36002278	-	A	INS	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	frame_shift_ins	c.148_147	p.G49fs	1.000:1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141	tier1			89	0	0.00	66	22	25.00
DDX59	0	genome.wustl.edu	37	1	200594042	200594042	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	200594042	200594042	T	-	DEL	DDX59	ENST00000447706	human	ensembl	74_37	-1	known	frame_shift_del	c.1730	p.N577fs	0.001	pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Znf_HIT,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX59	HGNC	ENSG00000118197	tier1			107	0	0.00	96	33	25.58
DHRS3	0	genome.wustl.edu	37	1	12638830	12638830	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	12638830	12638830	C	T	SNP	DHRS3	ENST00000376223	human	ensembl	74_37	-1	known	missense	c.614	p.G205E	1.000	smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Polysac_CapD-like,smart_PKS/FAS_KR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	DHRS3	HGNC	ENSG00000162496	tier1	-	-	26	0	0.00	26	13	33.33
DLC1	0	genome.wustl.edu	37	8	12957134	12957134	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	12957134	12957134	G	A	SNP	DLC1	ENST00000276297	human	ensembl	74_37	-1	known	silent	c.2712	p.P904	0.003	NULL	pfam_START_lipid-bd_dom,pfam_RhoGAP_dom,pfam_SAM_2,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,pfscan_RhoGAP_dom	-	no_errors	DLC1	HGNC	ENSG00000164741	tier1	-	-	41	0	0.00	17	13	43.33
DLG5	0	genome.wustl.edu	37	10	79595502	79595502	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	79595502	79595502	C	T	SNP	DLG5	ENST00000372391	human	ensembl	74_37	-1	known	missense	c.1616	p.S539N	1.000	NULL	pfam_PDZ,pfam_DUF622,pfam_GK/Ca_channel_bsu,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_SH3_domain,superfamily_DEATH-like_dom,smart_PDZ,smart_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_CARD,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like	-	no_errors	DLG5	HGNC	ENSG00000151208	tier1	-	-	27	0	0.00	20	10	33.33
DLX2	0	genome.wustl.edu	37	2	172966312	172966312	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	172966312	172966312	G	T	SNP	DLX2	ENST00000234198	human	ensembl	74_37	-1	known	missense	c.463	p.P155T	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Distal-less_N,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX2	HGNC	ENSG00000115844	tier1	-	-	48	0	0.00	33	20	37.74
DMWD	0	genome.wustl.edu	37	19	46289555	46289555	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	46289555	46289555	T	G	SNP	DMWD	ENST00000270223	human	ensembl	74_37	-1	known	missense	c.1199	p.E400A	0.997	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800	tier1	-	-	63	0	0.00	48	11	18.64
DNA2	0	genome.wustl.edu	37	10	70182521	70182521	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	70182521	70182521	A	-	DEL	DNA2	ENST00000399180	human	ensembl	74_37	-1	known	frame_shift_del	c.2593	p.S865fs	1.000	superfamily_P-loop_NTPase	pfam_DNA_replication_fac_Dna2_N,superfamily_P-loop_NTPase	-	no_errors	DNA2	HGNC	ENSG00000138346	tier1			29	0	0.00	31	12	27.91
DNAH11	0	genome.wustl.edu	37	7	21659621	21659621	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	21659621	21659621	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	silent	c.4440	p.Y1480	0.983	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	-	-	74	0	0.00	56	22	27.85
DNAH2	0	genome.wustl.edu	37	17	7689440	7689440	+	Splice_Site	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	7689440	7689440	A	G	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	splice_site	c.6130-2	e39-2	1.000	-	-	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	69	0	0.00	37	20	35.09
DNAH2	0	genome.wustl.edu	37	17	7707737	7707737	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	7707737	7707737	C	T	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.9136	p.L3046	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	35	0	0.00	21	16	43.24
DNAH2	0	genome.wustl.edu	37	17	7722600	7722600	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	7722600	7722600	T	C	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	missense	c.10889	p.M3630T	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	78	0	0.00	51	29	35.80
DNAH3	0	genome.wustl.edu	37	16	21156687	21156687	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	21156687	21156687	C	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.263	p.R88H	0.993	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	tier1	-	-	32	0	0.00	23	12	34.29
DNAJB3	0	genome.wustl.edu	37	2	234652187	234652188	+	RNA	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	234652187	234652188	-	C	INS	DNAJB3	ENST00000449667	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.050:0.014	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	tier1			59	0	0.00	40	12	23.08
DOCK3	0	genome.wustl.edu	37	3	51393542	51393542	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	51393542	51393542	G	A	SNP	DOCK3	ENST00000266037	human	ensembl	74_37	+1	known	silent	c.4272	p.T1424	0.508	NULL	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	tier1	-	-	116	0	0.00	77	33	30.00
DOT1L	0	genome.wustl.edu	37	19	2217874	2217874	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	2217874	2217874	T	C	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	missense	c.2648	p.I883T	1.000	pirsf_Histone_H3-K79_MeTrfase_met	pfam_DOT1,pirsf_Histone_H3-K79_MeTrfase_met	-	no_errors	DOT1L	HGNC	ENSG00000104885	tier1	-	-	17	0	0.00	13	6	31.58
DPF2	0	genome.wustl.edu	37	11	65119171	65119171	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	65119171	65119171	C	A	SNP	DPF2	ENST00000528416	human	ensembl	74_37	+1	known	missense	c.1117	p.L373M	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_C2H2-like,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2	-	no_errors	DPF2	HGNC	ENSG00000133884	tier1	-	-	109	0	0.00	99	36	26.67
DPYD	0	genome.wustl.edu	37	1	97770821	97770821	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	97770821	97770821	C	T	SNP	DPYD	ENST00000370192	human	ensembl	74_37	-1	known	missense	c.2293	p.V765M	0.998	pfam_Dihydroorotate_DH_1_2,tigrfam_Dihydroorotate_DH	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	tier1	-	-	85	0	0.00	45	28	38.36
DSCC1	0	genome.wustl.edu	37	8	120865356	120865357	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	120865356	120865357	-	A	INS	DSCC1	ENST00000313655	human	ensembl	74_37	-1	known	frame_shift_ins	c.282_281	p.I95fs	0.974:1.000	pfam_Sister_chromatid_cohesion_Dcc1	pfam_Sister_chromatid_cohesion_Dcc1	-	no_errors	DSCC1	HGNC	ENSG00000136982	tier1			84	0	0.00	70	14	16.67
DUOXA1	0	genome.wustl.edu	37	15	45413369	45413369	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	45413369	45413369	A	G	SNP	DUOXA1	ENST00000267803	human	ensembl	74_37	-1	known	missense	c.256	p.S86P	0.019	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA1	HGNC	ENSG00000140254	tier1	-	-	69	0	0.00	33	17	34.00
DUSP10	0	genome.wustl.edu	37	1	221875662	221875662	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	221875662	221875662	A	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507	tier1			42	0	0.00	37	15	28.85
DUSP13	0	genome.wustl.edu	37	10	76861664	76861664	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	76861664	76861664	G	A	SNP	DUSP13	ENST00000491677	human	ensembl	74_37	-1	known	missense	c.347	p.P116L	0.000	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	tier1	-	-	128	0	0.00	90	34	27.20
DYNC2H1	0	genome.wustl.edu	37	11	103059290	103059290	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	103059290	103059290	T	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.7205	p.I2402S	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	61	0	0.00	34	18	34.62
EBF1	0	genome.wustl.edu	37	5	158526597	158526597	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	158526597	158526597	T	-	DEL	EBF1	ENST00000518836	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.941	-	-	-	no_errors	EBF1	HGNC	ENSG00000164330	tier1			17	0	0.00	15	5	25.00
EEF1A1	0	genome.wustl.edu	37	6	74229174	74229174	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	74229174	74229174	A	G	SNP	EEF1A1	ENST00000309268	human	ensembl	74_37	-1	known	silent	c.210	p.G70	1.000	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_B-barrel,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	tier1	-	-	127	0	0.00	91	34	27.20
EFHB	0	genome.wustl.edu	37	3	19956867	19956867	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	19956867	19956867	A	G	SNP	EFHB	ENST00000295824	human	ensembl	74_37	-1	known	missense	c.1216	p.Y406H	0.978	NULL	pfam_SPARC/Testican_Ca-bd-dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFHB	HGNC	ENSG00000163576	tier1	-	-	119	0	0.00	69	35	33.65
EFNA3	0	genome.wustl.edu	37	1	155059035	155059036	+	RNA	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	155059035	155059036	-	G	INS	EFNA3	ENST00000470294	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	EFNA3	HGNC	ENSG00000143590	tier1			50	0	0.00	43	9	17.31
EGFLAM-AS1	0	genome.wustl.edu	37	5	38427389	38427389	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	38427389	38427389	A	-	DEL	EGFLAM-AS1	ENST00000508986	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EGFLAM-AS1	HGNC	ENSG00000249491	tier1			81	0	0.00	63	22	25.88
EGR4	0	genome.wustl.edu	37	2	73518754	73518754	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	73518754	73518754	G	A	SNP	EGR4	ENST00000545030	human	ensembl	74_37	-1	known	missense	c.1601	p.T534I	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	EGR4	HGNC	ENSG00000135625	tier1	-	-	54	0	0.00	32	19	37.25
EHBP1	0	genome.wustl.edu	37	2	63169883	63169883	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	63169883	63169883	C	T	SNP	EHBP1	ENST00000263991	human	ensembl	74_37	+1	known	nonsense	c.1321	p.R441*	1.000	superfamily_CH-domain	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1	HGNC	ENSG00000115504	tier1	-	-	78	0	0.00	51	21	29.17
EHBP1L1	0	genome.wustl.edu	37	11	65350508	65350508	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	65350508	65350508	T	G	SNP	EHBP1L1	ENST00000309295	human	ensembl	74_37	+1	known	missense	c.2365	p.L789V	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	EHBP1L1	HGNC	ENSG00000173442	tier1	-	-	29	0	0.00	22	7	24.14
EHMT1	0	genome.wustl.edu	37	9	140728844	140728844	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	140728844	140728844	T	C	SNP	EHMT1	ENST00000460843	human	ensembl	74_37	+1	known	missense	c.3584	p.V1195A	1.000	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	tier1	-	-	59	0	0.00	45	8	15.09
EIF5B	0	genome.wustl.edu	37	2	100007095	100007095	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	100007095	100007095	G	T	SNP	EIF5B	ENST00000289371	human	ensembl	74_37	+1	known	missense	c.2675	p.G892V	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase	pfam_EF_GTP-bd_dom,pfam_TIF_IF2_dom3,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Transl_B-barrel,superfamily_TIF_IF2_dom3,prints_EF_GTP-bd_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EIF5B	HGNC	ENSG00000158417	tier1	-	-	101	0	0.00	67	25	27.17
ELMO1	0	genome.wustl.edu	37	7	36901287	36901287	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	36901287	36901287	A	C	SNP	ELMO1	ENST00000310758	human	ensembl	74_37	-1	known	missense	c.1960	p.F654V	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO1	HGNC	ENSG00000155849	tier1	-	-	145	0	0.00	109	42	27.81
ELMOD3	0	genome.wustl.edu	37	2	85581643	85581643	+	RNA	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	85581643	85581643	G	-	DEL	ELMOD3	ENST00000462396	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ELMOD3	HGNC	ENSG00000115459	tier1			75	0	0.00	44	14	24.14
ENSG00000174171	0	genome.wustl.edu	37	15	42185453	42185453	+	RNA	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	42185453	42185453	C	A	SNP	ENSG00000174171	ENST00000309874	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.070	-	-	-	no_errors	RP11-23P13.6	Clone_based_vega_gene	ENSG00000174171	tier1	-	-	22	0	0.00	19	7	26.92
ENSG00000199405	0	genome.wustl.edu	37	8	56815414	56815415	+	RNA	DEL	TT	TT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	56815414	56815415	TT	-	DEL	ENSG00000199405	ENST00000362535	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.582:0.596	-	-	-	no_errors	SNORA1	RFAM	ENSG00000199405	tier1			32	0	0.00	24	9	27.27
ENSG00000213971	0	genome.wustl.edu	37	19	23456919	23456919	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	23456919	23456919	G	A	SNP	ENSG00000213971	ENST00000593324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-15H20.6	Clone_based_vega_gene	ENSG00000213971	tier1	-	-	14	0	0.00	14	12	46.15
ENSG00000226145	0	genome.wustl.edu	37	17	16725685	16725685	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	16725685	16725685	C	T	SNP	ENSG00000226145	ENST00000417510	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.210	-	-	-	no_errors	AC022596.6	Clone_based_vega_gene	ENSG00000226145	tier1	-	-	14	0	0.00	9	9	50.00
ENSG00000231731	0	genome.wustl.edu	37	2	128263364	128263365	+	RNA	DEL	AA	AA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	128263364	128263365	AA	-	DEL	ENSG00000231731	ENST00000599001	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.233:0.319	-	-	-	no_errors	AC010976.2	Clone_based_vega_gene	ENSG00000231731	tier1			58	0	0.00	27	16	37.21
ENSG00000234864	0	genome.wustl.edu	37	10	43199560	43199560	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	43199560	43199560	C	T	SNP	ENSG00000234864	ENST00000439913	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	AL022344.5	Clone_based_vega_gene	ENSG00000234864	tier1	-	-	79	0	0.00	64	32	33.33
ENSG00000239126	0	genome.wustl.edu	37	3	4920367	4920367	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	4920367	4920367	C	T	SNP	ENSG00000239126	ENST00000459040	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors	snoU13	RFAM	ENSG00000239126	tier1	-	-	30	0	0.00	26	7	21.21
ENSG00000239969	0	genome.wustl.edu	37	7	102021057	102021057	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	102021057	102021057	A	-	DEL	ENSG00000239969	ENST00000484974	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.079	-	-	-	no_errors	RP11-163E9.2	Clone_based_vega_gene	ENSG00000239969	tier1			78	0	0.00	57	20	25.97
ENSG00000252923	0	genome.wustl.edu	37	2	197550955	197550957	+	RNA	DEL	CTC	CTC	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	197550955	197550957	CTC	-	DEL	ENSG00000252923	ENST00000517114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.035:0.036:0.035	-	-	-	no_errors	SCARNA16	RFAM	ENSG00000252923	tier1			14	0	0.00	12	4	25.00
ENSG00000254815	0	genome.wustl.edu	37	11	558069	558069	+	RNA	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	558069	558069	G	-	DEL	ENSG00000254815	ENST00000527620	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-496I9.1	Clone_based_vega_gene	ENSG00000254815	tier1			43	0	0.00	38	13	25.49
ENSG00000257434	0	genome.wustl.edu	37	12	75435987	75435987	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	75435987	75435987	T	-	DEL	ENSG00000257434	ENST00000547040	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-81K13.1	Clone_based_vega_gene	ENSG00000257434	tier1			10	0	0.00	9	4	30.77
ENSG00000258168	0	genome.wustl.edu	37	12	70932105	70932105	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	70932105	70932105	C	T	SNP	ENSG00000258168	ENST00000546836	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-588H23.3	Clone_based_vega_gene	ENSG00000258168	tier1	-	-	12	0	0.00	6	4	40.00
ENSG00000271976	0	genome.wustl.edu	37	3	53894308	53894308	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	53894308	53894308	T	-	DEL	ENSG00000271976	ENST00000607783	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-884K10.7	Clone_based_vega_gene	ENSG00000271976	tier1			34	0	0.00	28	3	9.68
ENTPD6	0	genome.wustl.edu	37	20	25187923	25187924	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	25187923	25187924	-	C	INS	ENTPD6	ENST00000376652	human	ensembl	74_37	+1	known	frame_shift_ins	c.266_267	p.L91fs	0.000:0.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD6	HGNC	ENSG00000197586	tier1			60	0	0.00	41	20	32.79
EP300	0	genome.wustl.edu	37	22	41568501	41568501	+	Splice_Site	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	41568501	41568501	A	G	SNP	EP300	ENST00000263253	human	ensembl	74_37	+1	known	splice_site	c.4453-2	e28-2	0.999	-	-	-	no_errors	EP300	HGNC	ENSG00000100393	tier1	-	-	88	0	0.00	44	16	26.67
EPHA4	0	genome.wustl.edu	37	2	222428529	222428529	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	222428529	222428529	C	T	SNP	EPHA4	ENST00000281821	human	ensembl	74_37	-1	known	missense	c.745	p.A249T	1.000	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA4	HGNC	ENSG00000116106	tier1	-	-	88	0	0.00	56	26	31.71
EPHA6	0	genome.wustl.edu	37	3	96706591	96706591	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	96706591	96706591	G	A	SNP	EPHA6	ENST00000389672	human	ensembl	74_37	+1	known	missense	c.868	p.A290T	1.000	pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA6	HGNC	ENSG00000080224	tier1	-	-	219	0	0.00	127	60	32.09
EPHA7	0	genome.wustl.edu	37	6	93982014	93982014	+	Splice_Site	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	93982014	93982014	A	C	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	splice_site	c.1449+2	e6+2	1.000	-	-	-	no_errors	EPHA7	HGNC	ENSG00000135333	tier1	-	-	115	0	0.00	47	35	42.68
EPX	0	genome.wustl.edu	37	17	56280560	56280560	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	56280560	56280560	T	C	SNP	EPX	ENST00000225371	human	ensembl	74_37	+1	known	silent	c.1827	p.P609	0.291	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	EPX	HGNC	ENSG00000121053	tier1	-	-	170	0	0.00	127	12	8.63
ERBB3	0	genome.wustl.edu	37	12	56481806	56481806	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	56481806	56481806	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	missense	c.734	p.A245V	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	tier1	-	-	80	0	0.00	64	19	22.89
ERC2	0	genome.wustl.edu	37	3	56468719	56468719	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	56468719	56468719	G	A	SNP	ERC2	ENST00000288221	human	ensembl	74_37	-1	known	missense	c.317	p.S106F	1.000	NULL	pfam_CAZ_cplx_RIM-bd_prot,superfamily_Prefoldin	-	no_errors	ERC2	HGNC	ENSG00000187672	tier1	-	-	130	0	0.00	74	37	33.33
ERCC6	0	genome.wustl.edu	37	10	50690757	50690758	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	50690757	50690758	-	C	INS	ERCC6	ENST00000355832	human	ensembl	74_37	-1	known	frame_shift_ins	c.2145_2144	p.Y716fs	0.736:1.000	pfam_SNF2_N,superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	tier1			36	0	0.00	31	15	32.61
ERF	0	genome.wustl.edu	37	19	42753821	42753821	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	42753821	42753821	G	A	SNP	ERF	ENST00000222329	human	ensembl	74_37	-1	known	missense	c.443	p.T148M	1.000	NULL	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ERF	HGNC	ENSG00000105722	tier1	-	-	46	0	0.00	31	18	36.73
ERLIN1	0	genome.wustl.edu	37	10	101945291	101945291	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	101945291	101945291	G	A	SNP	ERLIN1	ENST00000407654	human	ensembl	74_37	-1	known	silent	c.93	p.G31	1.000	pfam_Band_7,smart_Band_7	pfam_Band_7,smart_Band_7	-	no_errors	ERLIN1	HGNC	ENSG00000107566	tier1	-	-	92	0	0.00	71	41	35.96
ESRP1	0	genome.wustl.edu	37	8	95686611	95686611	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	95686611	95686611	A	-	DEL	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	frame_shift_del	c.1528	p.N512fs	1.000	smart_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413	tier1			65	0	0.00	58	21	26.58
ESRP2	0	genome.wustl.edu	37	16	68264452	68264452	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	68264452	68264452	G	-	DEL	ESRP2	ENST00000565858	human	ensembl	74_37	-1	known	frame_shift_del	c.1934	p.P645fs	1.000	NULL	superfamily_RNaseH-like_dom,smart_RRM_dom	-	no_errors	ESRP2	HGNC	ENSG00000103067	tier1			41	0	0.00	31	6	16.22
EXOC3L1	0	genome.wustl.edu	37	16	67221435	67221435	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	67221435	67221435	G	A	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.733	p.R245C	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044	tier1	-	-	28	0	0.00	37	12	24.49
EXTL3	0	genome.wustl.edu	37	8	28574283	28574283	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	28574283	28574283	G	A	SNP	EXTL3	ENST00000220562	human	ensembl	74_37	+1	known	missense	c.707	p.C236Y	1.000	pfam_Exostosin	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL3	HGNC	ENSG00000012232	tier1	-	-	74	0	0.00	74	27	26.73
EYS	0	genome.wustl.edu	37	6	66012860	66012860	+	RNA	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	66012860	66012860	G	T	SNP	EYS	ENST00000370615	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	EYS	HGNC	ENSG00000188107	tier1	-	-	28	0	0.00	16	10	38.46
F10	0	genome.wustl.edu	37	13	113803399	113803399	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	113803399	113803399	G	T	SNP	F10	ENST00000375559	human	ensembl	74_37	+1	known	missense	c.1035	p.E345D	0.004	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pirsf_Pept_S1A_FX,pfam_Peptidase_S1,pfam_GLA_domain,pfam_EG-like_dom,superfamily_Trypsin-like_Pept_dom,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Peptidase_S1,prints_Peptidase_S1A,prints_GLA_domain,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Peptidase_S1	-	no_errors	F10	HGNC	ENSG00000126218	tier1	-	-	76	0	0.00	60	23	27.71
F8A1	0	genome.wustl.edu	37	X	154115732	154115732	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	154115732	154115732	A	T	SNP	F8A1	ENST00000369446	human	ensembl	74_37	+1	known	missense	c.1083	p.Q361H	0.980	NULL	NULL	-	no_errors	F8A1	HGNC	ENSG00000197932	tier1	-	-	110	0	0.00	61	21	25.61
FAM13C	0	genome.wustl.edu	37	10	61014202	61014202	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	61014202	61014202	A	G	SNP	FAM13C	ENST00000373868	human	ensembl	74_37	-1	known	missense	c.1238	p.V413A	1.000	NULL	NULL	-	no_errors	FAM13C	HGNC	ENSG00000148541	tier1	-	-	84	0	0.00	60	38	38.78
FAM155A	0	genome.wustl.edu	37	13	108518337	108518338	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	108518337	108518338	-	C	INS	FAM155A	ENST00000375915	human	ensembl	74_37	-1	known	frame_shift_ins	c.608_607	p.D203fs	0.051:0.252	NULL	NULL	-	no_errors	FAM155A	HGNC	ENSG00000204442	tier1			101	0	0.00	94	19	16.81
FAM196A	0	genome.wustl.edu	37	10	128973811	128973811	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	128973811	128973811	C	T	SNP	FAM196A	ENST00000522781	human	ensembl	74_37	-1	known	silent	c.849	p.P283	0.000	NULL	NULL	-	no_errors	FAM196A	HGNC	ENSG00000188916	tier1	-	-	33	0	0.00	14	6	30.00
FAM47C	0	genome.wustl.edu	37	X	37027002	37027002	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	37027002	37027002	C	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.519	p.D173	0.000	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	47	0	0.00	24	11	31.43
FAM9A	0	genome.wustl.edu	37	X	8764320	8764320	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	8764320	8764320	T	-	DEL	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	frame_shift_del	c.477	p.K159fs	0.007	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304	tier1			44	0	0.00	40	12	23.08
FANCM	0	genome.wustl.edu	37	14	45645955	45645955	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	45645955	45645955	A	-	DEL	FANCM	ENST00000267430	human	ensembl	74_37	+1	known	frame_shift_del	c.3998	p.V1336fs	0.008	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Restrct_endonuc-II-like,superfamily_RuvA_2-like,smart_Helicase_ATP-bd,smart_Helicase_C,smart_ERCC4_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	FANCM	HGNC	ENSG00000187790	tier1			55	0	0.00	48	7	12.73
FAR1	0	genome.wustl.edu	37	11	13716475	13716475	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	13716475	13716475	C	T	SNP	FAR1	ENST00000354817	human	ensembl	74_37	+1	known	nonsense	c.163	p.R55*	1.000	pfam_Male_sterile_NAD-bd,pfam_Epimerase_deHydtase	pfam_Male_sterile_NAD-bd,pfam_FAR,pfam_Epimerase_deHydtase	-	no_errors	FAR1	HGNC	ENSG00000197601	tier1	-	-	37	0	0.00	29	7	19.44
FAT1	0	genome.wustl.edu	37	4	187527353	187527353	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	187527353	187527353	C	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	silent	c.10221	p.T3407	0.011	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	83	0	0.00	46	21	31.34
FAT4	0	genome.wustl.edu	37	4	126240315	126240315	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	126240315	126240315	G	T	SNP	FAT4	ENST00000394329	human	ensembl	74_37	+1	known	missense	c.2749	p.A917S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	tier1	-	-	64	0	0.00	43	28	39.44
FBXL7	0	genome.wustl.edu	37	5	15937263	15937263	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	15937263	15937263	G	A	SNP	FBXL7	ENST00000504595	human	ensembl	74_37	+1	known	missense	c.1444	p.V482I	0.997	NULL	pfam_Leu-rich_rpt,pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL7	HGNC	ENSG00000183580	tier1	-	-	21	0	0.00	8	4	33.33
FBXO3	0	genome.wustl.edu	37	11	33777370	33777370	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	33777370	33777370	C	T	SNP	FBXO3	ENST00000265651	human	ensembl	74_37	-1	known	missense	c.625	p.A209T	1.000	smart_SMI1/KNR4_like_dom	pfam_ApaG_domain,pfam_F-box_dom,superfamily_ApaG_domain,superfamily_F-box_dom,smart_F-box_dom,smart_SMI1/KNR4_like_dom,pfscan_ApaG_domain,pfscan_F-box_dom	-	no_errors	FBXO3	HGNC	ENSG00000110429	tier1	-	-	88	0	0.00	35	21	37.50
FBXO31	0	genome.wustl.edu	37	16	87364951	87364951	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	87364951	87364951	C	T	SNP	FBXO31	ENST00000311635	human	ensembl	74_37	-1	known	silent	c.1563	p.A521	0.730	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO31	HGNC	ENSG00000103264	tier1	-	-	29	0	0.00	35	18	33.96
FBXO36	0	genome.wustl.edu	37	2	230787318	230787318	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	230787318	230787318	G	T	SNP	FBXO36	ENST00000283946	human	ensembl	74_37	+1	known	missense	c.89	p.R30L	0.954	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO36	HGNC	ENSG00000153832	tier1	-	-	50	0	0.00	23	14	37.84
FEN1	0	genome.wustl.edu	37	11	61563798	61563798	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	61563798	61563798	G	A	SNP	FEN1	ENST00000305885	human	ensembl	74_37	+1	known	missense	c.965	p.R322H	1.000	superfamily_5-3_exonuclease_C	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	FEN1	HGNC	ENSG00000168496	tier1	-	-	29	0	0.00	12	11	47.83
FER1L6	0	genome.wustl.edu	37	8	125072505	125072505	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	125072505	125072505	C	T	SNP	FER1L6	ENST00000399018	human	ensembl	74_37	+1	known	missense	c.2959	p.P987S	1.000	superfamily_C2_dom	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,superfamily_C2_dom,superfamily_ABC1_TM_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	FER1L6	HGNC	ENSG00000214814	tier1	-	-	101	0	0.00	71	19	21.11
FHOD3	0	genome.wustl.edu	37	18	34205516	34205516	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	34205516	34205516	C	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1000	p.S336fs	0.999	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1			81	0	0.00	65	22	25.29
FIBP	0	genome.wustl.edu	37	11	65651889	65651889	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	65651889	65651889	C	T	SNP	FIBP	ENST00000533045	human	ensembl	74_37	-1	putative	missense	c.955	p.V319I	0.254	NULL	pfam_FIBP	-	no_errors	FIBP	HGNC	ENSG00000172500	tier1	-	-	37	0	0.00	25	4	13.79
FILIP1L	0	genome.wustl.edu	37	3	99568273	99568273	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	99568273	99568273	T	-	DEL	FILIP1L	ENST00000354552	human	ensembl	74_37	-1	known	frame_shift_del	c.2247	p.K749fs	1.000	superfamily_Prefoldin	pfam_Cortactin-binding_p2_N,superfamily_Prefoldin,prints_Tropomyosin	-	no_errors	FILIP1L	HGNC	ENSG00000168386	tier1			144	0	0.00	87	36	29.27
FIP1L1	0	genome.wustl.edu	37	4	54319188	54319189	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	54319188	54319189	AG	-	DEL	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	frame_shift_del	c.1387_1388	p.D466fs	0.091:0.951	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	tier1			43	0	0.00	32	12	27.27
FLNB-AS1	0	genome.wustl.edu	37	3	58156282	58156282	+	RNA	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	58156282	58156282	A	G	SNP	FLNB-AS1	ENST00000488720	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FLNB-AS1	HGNC	ENSG00000244161	tier1	-	-	16	0	0.00	13	4	23.53
FLNC	0	genome.wustl.edu	37	7	128485198	128485198	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	128485198	128485198	A	G	SNP	FLNC	ENST00000325888	human	ensembl	74_37	+1	known	missense	c.3679	p.T1227A	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC	ENSG00000128591	tier1	-	-	68	0	0.00	24	13	35.14
FMO3	0	genome.wustl.edu	37	1	171061921	171061921	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	171061921	171061921	G	T	SNP	FMO3	ENST00000367755	human	ensembl	74_37	+1	known	missense	c.122	p.W41L	1.000	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pirsf_DiMe-aniline_mOase,prints_Flavin_mOase,prints_Flavin_mOase_3,prints_Flavin_mOase_1,prints_Flavin_mOase_2	-	no_errors	FMO3	HGNC	ENSG00000007933	tier1	-	-	54	0	0.00	31	21	40.38
FN1	0	genome.wustl.edu	37	2	216269246	216269246	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	216269246	216269246	C	T	SNP	FN1	ENST00000354785	human	ensembl	74_37	-1	known	missense	c.3119	p.R1040K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibronectin_type1,pfam_FN_type2_col-bd,superfamily_Kringle-like,superfamily_Fibronectin_type3,smart_Fibronectin_type1,smart_FN_type2_col-bd,smart_Fibronectin_type3,pfscan_Fibronectin_type1,pfscan_FN_type2_col-bd,pfscan_Fibronectin_type3	-	no_errors	FN1	HGNC	ENSG00000115414	tier1	-	-	74	0	0.00	55	25	31.25
FOSL1	0	genome.wustl.edu	37	11	65660629	65660629	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	65660629	65660629	C	-	DEL	FOSL1	ENST00000312562	human	ensembl	74_37	-1	known	frame_shift_del	c.544	p.D182fs	0.008	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	FOSL1	HGNC	ENSG00000175592	tier1			31	0	0.00	24	12	33.33
FOXG1	0	genome.wustl.edu	37	14	29237056	29237056	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	29237056	29237056	A	G	SNP	FOXG1	ENST00000313071	human	ensembl	74_37	+1	known	missense	c.571	p.M191V	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC	ENSG00000176165	tier1	-	-	38	0	0.00	28	8	22.22
FRY	0	genome.wustl.edu	37	13	32868621	32868621	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	32868621	32868621	G	A	SNP	FRY	ENST00000380250	human	ensembl	74_37	+1	known	silent	c.8697	p.T2899	0.939	NULL	superfamily_ARM-type_fold	-	no_errors	FRY	HGNC	ENSG00000073910	tier1	-	-	62	0	0.00	36	16	30.77
FSCN3	0	genome.wustl.edu	37	7	127239580	127239580	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	127239580	127239580	C	T	SNP	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	silent	c.1266	p.C422	1.000	superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328	tier1	-	-	83	0	0.00	55	24	30.38
FTSJ3	0	genome.wustl.edu	37	17	61901269	61901269	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	61901269	61901269	G	A	SNP	FTSJ3	ENST00000427159	human	ensembl	74_37	-1	known	missense	c.1198	p.R400C	1.000	NULL	pfam_rRNA_MeTfrase_Spb1_C,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_rRNA_MeTfrase_Spb1_DUF3381	-	no_errors	FTSJ3	HGNC	ENSG00000108592	tier1	-	-	54	0	0.00	42	19	30.16
FUS	0	genome.wustl.edu	37	16	31198124	31198124	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	31198124	31198124	G	A	SNP	FUS	ENST00000254108	human	ensembl	74_37	+1	known	missense	c.766	p.G256R	1.000	NULL	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	FUS	HGNC	ENSG00000089280	tier1	-	-	66	0	0.00	36	17	32.08
GABARAPL2	0	genome.wustl.edu	37	16	75611222	75611222	+	Silent	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	75611222	75611222	A	C	SNP	GABARAPL2	ENST00000037243	human	ensembl	74_37	+1	known	silent	c.309	p.G103	1.000	pfam_Atg8_fam,pfam_Atg12	pfam_Atg8_fam,pfam_Atg12	-	no_errors	GABARAPL2	HGNC	ENSG00000034713	tier1	-	-	96	0	0.00	56	20	26.32
GABBR1	0	genome.wustl.edu	37	6	29591177	29591177	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	29591177	29591177	C	T	SNP	GABBR1	ENST00000377034	human	ensembl	74_37	-1	known	missense	c.868	p.A290T	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Sushi_SCR_CCP,superfamily_Peripla_BP_I,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,pfscan_Sushi_SCR_CCP,pfscan_GPCR_3_C	-	no_errors	GABBR1	HGNC	ENSG00000204681	tier1	-	-	42	0	0.00	37	17	31.48
GAL3ST2	0	genome.wustl.edu	37	2	242742926	242742926	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	242742926	242742926	G	A	SNP	GAL3ST2	ENST00000192314	human	ensembl	74_37	+1	known	missense	c.542	p.S181N	0.000	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	pfam_Gal-3-0_sulfotransfrase,superfamily_P-loop_NTPase	-	no_errors	GAL3ST2	HGNC	ENSG00000154252	tier1	-	-	36	0	0.00	20	7	25.93
GALE	0	genome.wustl.edu	37	1	24125135	24125135	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	24125135	24125135	G	A	SNP	GALE	ENST00000374497	human	ensembl	74_37	-1	known	silent	c.207	p.D69	1.000	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,tigrfam_GalE	pfam_Epimerase_deHydtase,pfam_3Beta_OHSteriod_DH/Estase,pfam_dTDP_dehydrorham_reduct,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_Male_sterile_NAD-bd,pfam_PKS_KR,prints_Nuc_sugar_epim,tigrfam_GalE	-	no_errors	GALE	HGNC	ENSG00000117308	tier1	-	-	29	0	0.00	25	9	26.47
GALNT2	0	genome.wustl.edu	37	1	230371813	230371813	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	230371813	230371813	C	T	SNP	GALNT2	ENST00000366672	human	ensembl	74_37	+1	known	missense	c.428	p.T143M	1.000	pfam_Glyco_trans_2	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT2	HGNC	ENSG00000143641	tier1	-	-	43	0	0.00	11	5	31.25
GAPVD1	0	genome.wustl.edu	37	9	128111708	128111708	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	128111708	128111708	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	74_37	+1	known	missense	c.3290	p.R1097H	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1	-	-	101	0	0.00	55	28	33.73
GBF1	0	genome.wustl.edu	37	10	104120909	104120909	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	104120909	104120909	A	-	DEL	GBF1	ENST00000476019	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	GBF1	HGNC	ENSG00000107862	tier1			106	0	0.00	81	35	30.17
GBP1	0	genome.wustl.edu	37	1	89524773	89524773	+	RNA	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	89524773	89524773	T	C	SNP	GBP1	ENST00000493139	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GBP1	HGNC	ENSG00000117228	tier1	-	-	26	0	0.00	23	20	46.51
GBP5	0	genome.wustl.edu	37	1	89732166	89732166	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	89732166	89732166	T	-	DEL	GBP5	ENST00000343435	human	ensembl	74_37	-1	known	frame_shift_del	c.731	p.K244fs	0.600	pfam_Guanylate-bd_N,superfamily_P-loop_NTPase	pfam_Guanylate-bd_N,pfam_Guanylate-bd_C,superfamily_Guanylate-bd_C,superfamily_P-loop_NTPase	-	no_errors	GBP5	HGNC	ENSG00000154451	tier1			127	0	0.00	105	38	26.57
GDF2	0	genome.wustl.edu	37	10	48413908	48413908	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	48413908	48413908	G	A	SNP	GDF2	ENST00000249598	human	ensembl	74_37	-1	known	silent	c.960	p.S320	0.002	NULL	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF2	HGNC	ENSG00000128802	tier1	-	-	68	0	0.00	36	31	46.27
GFM1	0	genome.wustl.edu	37	3	158370031	158370031	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	158370031	158370031	T	C	SNP	GFM1	ENST00000486715	human	ensembl	74_37	+1	known	missense	c.836	p.L279S	0.904	pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,tigrfam_Transl_elong_EFG/EF2	pfam_EF_GTP-bd_dom,pfam_Transl_elong_EFG/EF2_IV,pfam_EFG_V,pfam_Transl_elong_EFTu/EF1A_2,superfamily_P-loop_NTPase,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_B-barrel,superfamily_EFG_III-V,smart_Transl_elong_EFG/EF2_IV,smart_EFG_V,prints_EF_GTP-bd_dom,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	tier1	-	-	68	0	0.00	49	16	24.62
GGT5	0	genome.wustl.edu	37	22	24622164	24622165	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	24622164	24622165	-	C	INS	GGT5	ENST00000398292	human	ensembl	74_37	-1	known	frame_shift_ins	c.1109_1108	p.D370fs	1.000:0.992	pfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase	-	no_errors	GGT5	HGNC	ENSG00000099998	tier1			52	0	0.00	40	13	24.53
GJA5	0	genome.wustl.edu	37	1	147230644	147230644	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	147230644	147230644	T	C	SNP	GJA5	ENST00000271348	human	ensembl	74_37	-1	known	missense	c.703	p.R235G	0.000	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin,prints_Connexin40	-	no_errors	GJA5	HGNC	ENSG00000143140	tier1	-	-	44	0	0.00	28	20	41.67
GLRX2	0	genome.wustl.edu	37	1	193065778	193065778	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	193065778	193065778	T	-	DEL	GLRX2	ENST00000367440	human	ensembl	74_37	-1	known	frame_shift_del	c.475	p.S159fs	0.039	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,prints_Glutaredoxin_subgr,tigrfam_Glutaredoxin_euk/vir	-	no_errors	GLRX2	HGNC	ENSG00000023572	tier1			65	0	0.00	41	16	28.07
GMIP	0	genome.wustl.edu	37	19	19753372	19753372	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	19753372	19753372	C	A	SNP	GMIP	ENST00000203556	human	ensembl	74_37	-1	known	missense	c.76	p.D26Y	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	GMIP	HGNC	ENSG00000089639	tier1	-	-	103	0	0.00	75	38	33.63
GNAS	0	genome.wustl.edu	37	20	57415654	57415654	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	57415654	57415654	G	A	SNP	GNAS	ENST00000313949	human	ensembl	74_37	+1	known	missense	c.493	p.A165T	0.064	pfam_NESP55	pfam_NESP55	-	no_errors	GNAS	HGNC	ENSG00000087460	tier1	-	-	35	0	0.00	20	13	39.39
GNB3	0	genome.wustl.edu	37	12	6952826	6952828	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	ACA	ACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	6952826	6952828	ACA	-	DEL	GNB3	ENST00000229264	human	ensembl	74_37	+1	known	in_frame_del	c.461_463	p.N156in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep	-	no_errors	GNB3	HGNC	ENSG00000111664	tier1			47	0	0.00	43	13	23.21
GNG12	0	genome.wustl.edu	37	1	68171151	68171151	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	68171151	68171151	T	-	DEL	GNG12	ENST00000370982	human	ensembl	74_37	-1	known	frame_shift_del	c.202	p.T68fs	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG12	HGNC	ENSG00000172380	tier1			82	0	0.00	60	15	20.00
GNG2	0	genome.wustl.edu	37	14	52433395	52433395	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	52433395	52433395	C	T	SNP	GNG2	ENST00000335281	human	ensembl	74_37	+1	known	missense	c.206	p.A69V	1.000	smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom	pfam_G-protein_gamma-like_dom,superfamily_G-protein_gamma-like_dom,smart_G-protein_gamma-like_dom,pfscan_G-protein_gamma-like_dom,prints_Gprotein-gamma	-	no_errors	GNG2	HGNC	ENSG00000186469	tier1	-	-	114	0	0.00	81	23	22.12
GNS	0	genome.wustl.edu	37	12	65141614	65141616	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	65141614	65141616	TGT	-	DEL	GNS	ENST00000258145	human	ensembl	74_37	-1	known	in_frame_del	c.337_335	p.N112in_frame_del	1.000:1.000:1.000	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core,pirsf_GlcNAc_6-SO4ase	-	no_errors	GNS	HGNC	ENSG00000135677	tier1			141	0	0.00	126	43	25.44
GOLGA1	0	genome.wustl.edu	37	9	127662755	127662755	+	Silent	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	127662755	127662755	G	T	SNP	GOLGA1	ENST00000373555	human	ensembl	74_37	-1	known	silent	c.1137	p.A379	0.005	superfamily_Prefoldin	pfam_GRIP,superfamily_Prefoldin,superfamily_GRIP,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA1	HGNC	ENSG00000136935	tier1	-	-	48	0	0.00	21	10	32.26
GOLGA2	0	genome.wustl.edu	37	9	131019932	131019932	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	131019932	131019932	C	T	SNP	GOLGA2	ENST00000421699	human	ensembl	74_37	-1	known	missense	c.2585	p.R862Q	0.061	NULL	superfamily_CofA_tubulin-bd	-	no_errors	GOLGA2	HGNC	ENSG00000167110	tier1	-	-	156	0	0.00	91	55	37.67
GORASP1	0	genome.wustl.edu	37	3	39142120	39142120	+	RNA	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	39142120	39142120	A	G	SNP	GORASP1	ENST00000489587	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.003	-	-	-	no_errors	GORASP1	HGNC	ENSG00000114745	tier1	-	-	20	0	0.00	21	12	36.36
GPR112	0	genome.wustl.edu	37	X	135482192	135482192	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	135482192	135482192	C	T	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	missense	c.8492	p.A2831V	0.978	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	tier1	-	-	101	0	0.00	61	43	41.35
GPR115	0	genome.wustl.edu	37	6	47678561	47678561	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	47678561	47678561	A	-	DEL	GPR115	ENST00000371220	human	ensembl	74_37	+1	known	frame_shift_del	c.410	p.K139fs	0.923	prints_GPCR_2_Ig-hepta_rcpt	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR115	HGNC	ENSG00000153294	tier1			88	0	0.00	67	18	21.18
GPR115	0	genome.wustl.edu	37	6	47681947	47681947	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	47681947	47681947	A	G	SNP	GPR115	ENST00000371220	human	ensembl	74_37	+1	known	silent	c.1137	p.S379	0.841	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR115	HGNC	ENSG00000153294	tier1	-	-	56	0	0.00	42	30	41.67
GPR137	0	genome.wustl.edu	37	11	64056555	64056555	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64056555	64056555	C	T	SNP	GPR137	ENST00000438980	human	ensembl	74_37	+1	known	missense	c.1078	p.R360C	0.993	NULL	NULL	-	no_errors	GPR137	HGNC	ENSG00000173264	tier1	-	-	8	0	0.00	8	6	42.86
GPR158	0	genome.wustl.edu	37	10	25464703	25464703	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	25464703	25464703	G	A	SNP	GPR158	ENST00000376351	human	ensembl	74_37	+1	known	silent	c.354	p.A118	0.994	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPR158	HGNC	ENSG00000151025	tier1	-	-	82	0	0.00	64	26	28.89
GPR17	0	genome.wustl.edu	37	2	128409083	128409083	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	128409083	128409083	C	T	SNP	GPR17	ENST00000272644	human	ensembl	74_37	+1	known	silent	c.858	p.Y286	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	GPR17	HGNC	ENSG00000144230	tier1	-	-	39	0	0.00	26	15	36.59
GPR179	0	genome.wustl.edu	37	17	36485569	36485569	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	36485569	36485569	C	T	SNP	GPR179	ENST00000342292	human	ensembl	74_37	-1	known	missense	c.3883	p.G1295R	0.046	NULL	pfam_GPCR_3_C,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C	-	no_errors	GPR179	HGNC	ENSG00000188888	tier1	-	-	52	0	0.00	28	10	26.32
GPR4	0	genome.wustl.edu	37	19	46094647	46094647	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	46094647	46094647	G	A	SNP	GPR4	ENST00000323040	human	ensembl	74_37	-1	known	nonsense	c.478	p.R160*	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPR4_orph,prints_GPCR_Rhodpsn,prints_Psych_rcpt	-	no_errors	GPR4	HGNC	ENSG00000177464	tier1	-	-	118	0	0.00	93	33	26.19
GPR98	0	genome.wustl.edu	37	5	90124781	90124781	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	90124781	90124781	T	-	DEL	GPR98	ENST00000405460	human	ensembl	74_37	+1	known	frame_shift_del	c.16389	p.F5465fs	0.351	NULL	pfam_Calx_beta,pfam_EPTP,pfam_GPCR_2_secretin-like,pfam_GPS_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Gal_Oxase/kelch_b-propeller,smart_Calx_beta,pfscan_EAR,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR98	HGNC	ENSG00000164199	tier1			37	0	0.00	24	11	31.43
GPRC5C	0	genome.wustl.edu	37	17	72436022	72436023	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	72436022	72436023	-	C	INS	GPRC5C	ENST00000392627	human	ensembl	74_37	+1	known	frame_shift_ins	c.242_243	p.L83fs	0.990:0.997	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C	-	no_errors	GPRC5C	HGNC	ENSG00000170412	tier1			60	0	0.00	37	22	37.29
GPRIN1	0	genome.wustl.edu	37	5	176026665	176026665	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	176026665	176026665	G	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.171	p.R58fs	0.001	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1			106	0	0.00	68	16	19.05
GRHL1	0	genome.wustl.edu	37	2	10105453	10105453	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	10105453	10105453	C	T	SNP	GRHL1	ENST00000324907	human	ensembl	74_37	+1	known	silent	c.1053	p.I351	0.951	pfam_CP2	pfam_CP2	-	no_errors	GRHL1	HGNC	ENSG00000134317	tier1	-	-	101	0	0.00	61	17	21.79
GRID2	0	genome.wustl.edu	37	4	93225753	93225753	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	93225753	93225753	A	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	tier1			10	0	0.00	10	12	54.55
GRIK3	0	genome.wustl.edu	37	1	37319219	37319219	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	37319219	37319219	C	T	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	silent	c.1209	p.E403	0.997	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	tier1	-	-	49	0	0.00	35	11	23.91
GRIN2B	0	genome.wustl.edu	37	12	13720077	13720077	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	13720077	13720077	G	T	SNP	GRIN2B	ENST00000609686	human	ensembl	74_37	-1	known	missense	c.2480	p.A827E	1.000	pfam_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000273079	tier1	-	-	102	0	0.00	36	30	44.78
GRINA	0	genome.wustl.edu	37	8	145065456	145065457	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	145065456	145065457	-	G	INS	GRINA	ENST00000313269	human	ensembl	74_37	+1	known	frame_shift_ins	c.65_66	p.P25fs	1.000:0.997	NULL	pfam_Bax_inhibitor_1-related	-	no_errors	GRINA	HGNC	ENSG00000178719	tier1			32	0	0.00	31	7	18.42
GRK4	0	genome.wustl.edu	37	4	3040280	3040281	+	RNA	DEL	AA	AA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	3040280	3040281	AA	-	DEL	GRK4	ENST00000504308	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	GRK4	HGNC	ENSG00000125388	tier1			54	0	0.00	24	26	52.00
GSE1	0	genome.wustl.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	85682289	85682290	-	C	INS	GSE1	ENST00000253458	human	ensembl	74_37	+1	known	frame_shift_ins	c.358_359	p.V123fs	1.000:0.999	pfam_GSE-like	pfam_GSE-like	-	no_errors	GSE1	HGNC	ENSG00000131149	tier1			86	0	0.00	63	16	20.25
HDAC9	0	genome.wustl.edu	37	7	18631237	18631237	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	18631237	18631237	G	A	SNP	HDAC9	ENST00000441542	human	ensembl	74_37	+1	known	missense	c.514	p.V172M	1.000	pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC9	HGNC	ENSG00000048052	tier1	-	-	43	0	0.00	41	12	22.64
HDGFRP2	0	genome.wustl.edu	37	19	4491823	4491824	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	4491823	4491824	-	A	INS	HDGFRP2	ENST00000301284	human	ensembl	74_37	+1	known	frame_shift_ins	c.669_670	p.K226fs	0.954:0.997	NULL	pfam_LEDGF,pfam_PWWP_dom,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	HDGFRP2	Uniprot_gn	ENSG00000167674	tier1			81	0	0.00	69	20	22.47
HEATR6	0	genome.wustl.edu	37	17	58149610	58149610	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	58149610	58149610	T	G	SNP	HEATR6	ENST00000184956	human	ensembl	74_37	-1	known	missense	c.665	p.K222T	0.984	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR6	HGNC	ENSG00000068097	tier1	-	-	43	0	0.00	31	16	34.04
HECW2	0	genome.wustl.edu	37	2	197187274	197187274	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	197187274	197187274	C	T	SNP	HECW2	ENST00000260983	human	ensembl	74_37	-1	known	missense	c.812	p.R271H	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_WW_dom,superfamily_C2_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	HECW2	HGNC	ENSG00000138411	tier1	-	-	157	0	0.00	134	50	27.17
HERC1	0	genome.wustl.edu	37	15	63966705	63966705	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	63966705	63966705	G	A	SNP	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	missense	c.7682	p.A2561V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	tier1	-	-	38	0	0.00	15	9	37.50
HERC2P9	0	genome.wustl.edu	37	15	28903788	28903788	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	28903788	28903788	G	A	SNP	HERC2P9	ENST00000528584	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P9	HGNC	ENSG00000206149	tier1	-	-	32	0	0.00	13	14	51.85
HERC4	0	genome.wustl.edu	37	10	69714239	69714239	+	RNA	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	69714239	69714239	T	G	SNP	HERC4	ENST00000480158	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	HERC4	HGNC	ENSG00000148634	tier1	-	-	30	0	0.00	29	6	17.14
HEXIM1	0	genome.wustl.edu	37	17	43227397	43227397	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	43227397	43227397	G	A	SNP	HEXIM1	ENST00000332499	human	ensembl	74_37	+1	known	silent	c.840	p.Q280	1.000	NULL	NULL	-	no_errors	HEXIM1	HGNC	ENSG00000186834	tier1	-	-	63	0	0.00	43	31	41.89
HGF	0	genome.wustl.edu	37	7	81358957	81358957	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	81358957	81358957	T	C	SNP	HGF	ENST00000222390	human	ensembl	74_37	-1	known	missense	c.1004	p.H335R	1.000	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_PAN-1_domain,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	tier1	-	-	90	0	0.00	61	33	35.11
HIST1H1B	0	genome.wustl.edu	37	6	27835034	27835034	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	27835034	27835034	T	G	SNP	HIST1H1B	ENST00000331442	human	ensembl	74_37	-1	known	missense	c.274	p.S92R	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1B	HGNC	ENSG00000184357	tier1	-	-	231	0	0.00	139	53	27.60
HIVEP1	0	genome.wustl.edu	37	6	12122680	12122680	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	12122680	12122680	C	T	SNP	HIVEP1	ENST00000379388	human	ensembl	74_37	+1	known	silent	c.2652	p.N884	0.020	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP1	HGNC	ENSG00000095951	tier1	-	-	111	0	0.00	80	37	31.62
HK3	0	genome.wustl.edu	37	5	176314514	176314514	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	176314514	176314514	C	T	SNP	HK3	ENST00000292432	human	ensembl	74_37	-1	known	missense	c.1538	p.R513Q	0.011	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK3	HGNC	ENSG00000160883	tier1	-	-	35	0	0.00	21	11	34.38
HLA-B	0	genome.wustl.edu	37	6	31323363	31323363	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	31323363	31323363	G	-	DEL	HLA-B	ENST00000412585	human	ensembl	74_37	-1	known	frame_shift_del	c.626	p.P209fs	0.142	pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-B	HGNC	ENSG00000234745	tier1			150	0	0.00	114	34	22.97
HLA-L	0	genome.wustl.edu	37	6	30227677	30227677	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	30227677	30227677	C	T	SNP	HLA-L	ENST00000482052	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.421	-	-	-	no_errors	HLA-L	HGNC	ENSG00000243753	tier1	-	-	26	0	0.00	22	7	24.14
HNRNPH3	0	genome.wustl.edu	37	10	70097823	70097824	+	RNA	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	70097823	70097824	-	G	INS	HNRNPH3	ENST00000469172	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.959:1.000	-	-	-	no_errors	HNRNPH3	HGNC	ENSG00000096746	tier1			18	0	0.00	18	4	18.18
HRAS	0	genome.wustl.edu	37	11	532607	532607	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	532607	532607	G	A	SNP	HRAS	ENST00000478324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HRAS	HGNC	ENSG00000174775	tier1	-	-	10	0	0.00	8	4	33.33
HS6ST2	0	genome.wustl.edu	37	X	132092475	132092475	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	132092475	132092475	C	T	SNP	HS6ST2	ENST00000521489	human	ensembl	74_37	-1	known	silent	c.156	p.A52	0.974	NULL	pfam_Sulfotransferase,superfamily_P-loop_NTPase	-	no_errors	HS6ST2	HGNC	ENSG00000171004	tier1	-	-	17	0	0.00	8	7	46.67
HSP90AA4P	0	genome.wustl.edu	37	4	190394392	190394392	+	RNA	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	190394392	190394392	G	T	SNP	HSP90AA4P	ENST00000378770	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HSP90AA4P	HGNC	ENSG00000205100	tier1	-	-	58	0	0.00	54	10	15.62
HUS1B	0	genome.wustl.edu	37	6	656426	656426	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	656426	656426	C	T	SNP	HUS1B	ENST00000380907	human	ensembl	74_37	-1	known	silent	c.519	p.A173	0.000	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	pfam_Hus1/Mec3,pirsf_Cell_cycle_HUS1	-	no_errors	HUS1B	HGNC	ENSG00000188996	tier1	-	-	174	0	0.00	101	63	38.41
HUWE1	0	genome.wustl.edu	37	X	53578325	53578326	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	53578325	53578326	-	G	INS	HUWE1	ENST00000262854	human	ensembl	74_37	-1	known	frame_shift_ins	c.8998_8997	p.S2999fs	0.060:0.020	NULL	pfam_E3_Ub_ligase_DUF913,pfam_HECT,pfam_E3_Ub_ligase_DUF908,pfam_WWE-dom,pfam_UBA/Ts_N,superfamily_HECT,superfamily_UBA-like,superfamily_ARM-type_fold,smart_UBA/transl_elong_EF1B_N_euk,smart_HECT,pfscan_HECT,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_WWE-dom	-	no_errors	HUWE1	HGNC	ENSG00000086758	tier1			17	0	0.00	16	4	20.00
IARS2	0	genome.wustl.edu	37	1	220284281	220284281	+	Splice_Site	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	220284281	220284281	T	C	SNP	IARS2	ENST00000302637	human	ensembl	74_37	+1	known	splice_site	c.1479+2	e11+2	1.000	-	-	-	no_errors	IARS2	HGNC	ENSG00000067704	tier1	-	-	62	0	0.00	44	24	35.29
IDS	0	genome.wustl.edu	37	X	148586602	148586602	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	148586602	148586602	G	A	SNP	IDS	ENST00000340855	human	ensembl	74_37	-1	known	silent	c.66	p.V22	0.000	NULL	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	IDS	HGNC	ENSG00000010404	tier1	-	-	62	0	0.00	61	15	19.48
IFT20	0	genome.wustl.edu	37	17	26656207	26656207	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	26656207	26656207	C	T	SNP	IFT20	ENST00000357896	human	ensembl	74_37	-1	known	missense	c.427	p.A143T	1.000	NULL	NULL	-	no_errors	IFT20	HGNC	ENSG00000109083	tier1	-	-	197	0	0.00	120	29	19.46
IGFBP1	0	genome.wustl.edu	37	7	45928286	45928286	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	45928286	45928286	T	C	SNP	IGFBP1	ENST00000275525	human	ensembl	74_37	+1	known	missense	c.35	p.V12A	0.010	NULL	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt_N_dom,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP1	-	no_errors	IGFBP1	HGNC	ENSG00000146678	tier1	-	-	12	0	0.00	11	5	31.25
IGSF11	0	genome.wustl.edu	37	3	118621797	118621797	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	118621797	118621797	A	G	SNP	IGSF11	ENST00000393775	human	ensembl	74_37	-1	known	missense	c.866	p.L289P	1.000	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF11	HGNC	ENSG00000144847	tier1	-	-	57	0	0.00	44	23	34.33
IGSF3	0	genome.wustl.edu	37	1	117122237	117122237	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	117122237	117122237	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	silent	c.3171	p.G1057	0.963	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061	tier1	-	-	30	0	0.00	21	8	26.67
IGSF3	0	genome.wustl.edu	37	1	117156603	117156603	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	117156603	117156603	A	G	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	missense	c.616	p.S206P	0.997	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061	tier1	-	-	56	0	0.00	41	15	26.79
IKBKB	0	genome.wustl.edu	37	8	42178258	42178258	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	42178258	42178258	C	T	SNP	IKBKB	ENST00000520655	human	ensembl	74_37	+1	known	nonsense	c.1522	p.R508*	0.526	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ubiquitin_supergroup,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	IKBKB	HGNC	ENSG00000104365	tier1	rs202131707	-	69	0	0.00	62	34	35.42
IL17RB	0	genome.wustl.edu	37	3	53889347	53889347	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	53889347	53889347	A	-	DEL	IL17RB	ENST00000288167	human	ensembl	74_37	+1	known	frame_shift_del	c.508	p.K172fs	0.036	NULL	pfam_SEFIR	-	no_errors	IL17RB	HGNC	ENSG00000056736	tier1			147	0	0.00	87	28	24.35
IMPG2	0	genome.wustl.edu	37	3	100951711	100951711	+	Silent	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	100951711	100951711	G	T	SNP	IMPG2	ENST00000193391	human	ensembl	74_37	-1	known	silent	c.3147	p.P1049	0.999	pfscan_EG-like_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG2	HGNC	ENSG00000081148	tier1	-	-	49	0	0.00	32	21	39.62
INMT	0	genome.wustl.edu	37	7	30795536	30795536	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	30795536	30795536	G	A	SNP	INMT	ENST00000484180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	INMT	HGNC	ENSG00000241644	tier1	-	-	26	0	0.00	18	13	41.94
INPP5A	0	genome.wustl.edu	37	10	134540479	134540479	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	134540479	134540479	C	T	SNP	INPP5A	ENST00000487614	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	INPP5A	HGNC	ENSG00000068383	tier1	-	-	28	0	0.00	10	12	54.55
INSR	0	genome.wustl.edu	37	19	7117215	7117215	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	7117215	7117215	T	C	SNP	INSR	ENST00000302850	human	ensembl	74_37	-1	known	missense	c.4001	p.H1334R	0.996	pirsf_Tyr_kinase_insulin-like_rcpt	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105	tier1	-	-	67	0	0.00	41	14	25.45
INSR	0	genome.wustl.edu	37	19	7166172	7166175	+	Frame_Shift_Del	DEL	ATCT	ATCT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	ATCT	ATCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	7166172	7166175	ATCT	-	DEL	INSR	ENST00000302850	human	ensembl	74_37	-1	known	frame_shift_del	c.1854_1851	p.D618fs	0.997:1.000:1.000:1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	INSR	HGNC	ENSG00000171105	tier1			70	0	0.00	34	12	26.09
IQGAP1	0	genome.wustl.edu	37	15	91009534	91009534	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	91009534	91009534	T	C	SNP	IQGAP1	ENST00000268182	human	ensembl	74_37	+1	known	missense	c.1901	p.V634A	0.997	superfamily_P-loop_NTPase	pfam_RasGAP,pfam_RasGAP_C,pfam_IQ_motif_EF-hand-BS,pfam_CH-domain,pfam_WW_dom,superfamily_Rho_GTPase_activation_prot,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_WW_dom,smart_IQ_motif_EF-hand-BS,smart_RasGAP,pfscan_CH-domain,pfscan_IQ_motif_EF-hand-BS,pfscan_WW_dom,pfscan_RasGAP	-	no_errors	IQGAP1	HGNC	ENSG00000140575	tier1	-	-	104	0	0.00	56	31	35.63
IRX1	0	genome.wustl.edu	37	5	3596413	3596413	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	3596413	3596413	C	T	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.194	p.A65V	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549	tier1	-	-	9	0	0.00	3	4	57.14
ITGA11	0	genome.wustl.edu	37	15	68624271	68624271	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	68624271	68624271	G	-	DEL	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	frame_shift_del	c.1696	p.L566fs	0.891	pfam_FG-GAP,smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	tier1			20	0	0.00	17	3	15.00
ITIH2	0	genome.wustl.edu	37	10	7786853	7786853	+	Silent	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	7786853	7786853	C	A	SNP	ITIH2	ENST00000358415	human	ensembl	74_37	+1	known	silent	c.2508	p.P836	0.000	pfam_ITI_HC_C	pfam_ITI_HC_C,pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH2	HGNC	ENSG00000151655	tier1	-	-	71	0	0.00	48	30	37.97
ITIH6	0	genome.wustl.edu	37	X	54784866	54784866	+	Silent	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	54784866	54784866	A	C	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	silent	c.1641	p.G547	1.000	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313	tier1	-	-	20	0	0.00	20	5	20.00
JARID2	0	genome.wustl.edu	37	6	15496722	15496722	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	15496722	15496722	G	-	DEL	JARID2	ENST00000341776	human	ensembl	74_37	+1	known	frame_shift_del	c.1266	p.R425fs	0.963	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	tier1			45	0	0.00	43	17	28.33
JDP2	0	genome.wustl.edu	37	14	75904683	75904683	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	75904683	75904683	C	-	DEL	JDP2	ENST00000267569	human	ensembl	74_37	+1	known	frame_shift_del	c.93	p.L33fs	1.000	NULL	pfam_bZIP,superfamily_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos	-	no_errors	JDP2	HGNC	ENSG00000140044	tier1			12	0	0.00	12	5	29.41
KAL1	0	genome.wustl.edu	37	X	8699940	8699940	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	8699940	8699940	G	A	SNP	KAL1	ENST00000262648	human	ensembl	74_37	-1	known	silent	c.138	p.R46	0.999	NULL	pfam_Fibronectin_type3,pfam_WAP-type_4-diS_core,superfamily_Fibronectin_type3,superfamily_WAP-type_4-diS_core,smart_WAP-type_4-diS_core,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_WAP-type_4-diS_core	-	no_errors	KAL1	HGNC	ENSG00000011201	tier1	-	-	21	0	0.00	10	7	41.18
KANK1	0	genome.wustl.edu	37	9	732418	732418	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	732418	732418	A	C	SNP	KANK1	ENST00000382297	human	ensembl	74_37	+1	known	missense	c.3046	p.S1016R	1.000	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK1	HGNC	ENSG00000107104	tier1	-	-	80	0	0.00	56	22	28.21
KANK4	0	genome.wustl.edu	37	1	62740528	62740528	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	62740528	62740528	G	-	DEL	KANK4	ENST00000371153	human	ensembl	74_37	-1	known	frame_shift_del	c.248	p.P83fs	0.017	NULL	pfam_KN_motif,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KANK4	HGNC	ENSG00000132854	tier1			107	0	0.00	95	37	28.03
KAZN	0	genome.wustl.edu	37	1	14925622	14925622	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	14925622	14925622	C	T	SNP	KAZN	ENST00000376030	human	ensembl	74_37	+1	known	silent	c.129	p.G43	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	KAZN	HGNC	ENSG00000189337	tier1	-	-	23	0	0.00	7	9	56.25
KCNAB1	0	genome.wustl.edu	37	3	156009837	156009837	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	156009837	156009837	G	A	SNP	KCNAB1	ENST00000302490	human	ensembl	74_37	+1	known	silent	c.141	p.A47	0.856	NULL	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282	tier1	-	-	66	0	0.00	37	15	28.85
KCNB1	0	genome.wustl.edu	37	20	47990120	47990120	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	47990120	47990120	A	G	SNP	KCNB1	ENST00000371741	human	ensembl	74_37	-1	known	silent	c.1977	p.S659	0.984	pfam_K_chnl_volt-dep_Kv2	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.1,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB1	HGNC	ENSG00000158445	tier1	-	-	59	0	0.00	43	24	35.82
KCNB2	0	genome.wustl.edu	37	8	73848914	73848914	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	73848914	73848914	C	T	SNP	KCNB2	ENST00000523207	human	ensembl	74_37	+1	known	missense	c.1324	p.R442W	1.000	NULL	pfam_K_chnl_volt-dep_Kv2,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv2.2,prints_K_chnl_volt-dep_Kv2,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv8	-	no_errors	KCNB2	HGNC	ENSG00000182674	tier1	-	-	101	0	0.00	110	14	11.29
KCNG2	0	genome.wustl.edu	37	18	77659467	77659467	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	77659467	77659467	G	A	SNP	KCNG2	ENST00000316249	human	ensembl	74_37	+1	known	missense	c.1052	p.R351H	0.995	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNG2	HGNC	ENSG00000178342	tier1	-	-	31	0	0.00	20	16	44.44
KCNH1	0	genome.wustl.edu	37	1	210857289	210857289	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	210857289	210857289	C	G	SNP	KCNH1	ENST00000271751	human	ensembl	74_37	-1	known	missense	c.2304	p.K768N	1.000	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH1	HGNC	ENSG00000143473	tier1	-	-	29	0	0.00	25	11	30.56
KCNH7	0	genome.wustl.edu	37	2	163253453	163253453	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	163253453	163253453	T	G	SNP	KCNH7	ENST00000332142	human	ensembl	74_37	-1	known	missense	c.2410	p.K804Q	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	tier1	-	-	43	0	0.00	28	12	30.00
KCNJ2	0	genome.wustl.edu	37	17	68171653	68171653	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	68171653	68171653	T	C	SNP	KCNJ2	ENST00000243457	human	ensembl	74_37	+1	known	missense	c.473	p.V158A	0.998	pfam_K_chnl_inward-rec_Kir,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,pfam_K_chnl_inward-rec_Kir_N,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir2.1	-	no_errors	KCNJ2	HGNC	ENSG00000123700	tier1	-	-	95	0	0.00	68	36	34.62
KCNJ3	0	genome.wustl.edu	37	2	155555857	155555857	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	155555857	155555857	C	T	SNP	KCNJ3	ENST00000295101	human	ensembl	74_37	+1	known	silent	c.570	p.R190	0.996	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.1,prints_K_chnl_inward-rec_Kir	-	no_errors	KCNJ3	HGNC	ENSG00000162989	tier1	-	-	48	0	0.00	39	12	23.53
KCNMA1	0	genome.wustl.edu	37	10	78771791	78771791	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	78771791	78771791	A	-	DEL	KCNMA1	ENST00000406533	human	ensembl	74_37	-1	known	frame_shift_del	c.2038	p.Y680fs	1.000	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	tier1			66	0	0.00	36	13	26.53
KCNQ3	0	genome.wustl.edu	37	8	133141789	133141789	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	133141789	133141789	C	T	SNP	KCNQ3	ENST00000388996	human	ensembl	74_37	-1	known	missense	c.2339	p.R780H	1.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ3	HGNC	ENSG00000184156	tier1	-	-	39	0	0.00	38	9	19.15
KCTD8	0	genome.wustl.edu	37	4	44450078	44450078	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	44450078	44450078	A	G	SNP	KCTD8	ENST00000360029	human	ensembl	74_37	-1	known	missense	c.463	p.S155P	1.000	superfamily_BTB/POZ_fold	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD8	HGNC	ENSG00000183783	tier1	-	-	22	0	0.00	24	14	36.84
KDELC1	0	genome.wustl.edu	37	13	103440189	103440189	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	103440189	103440189	A	T	SNP	KDELC1	ENST00000376004	human	ensembl	74_37	-1	known	missense	c.1378	p.F460I	1.000	pfam_LipoPS_modifying,smart_LipoPS_modifying	pfam_LipoPS_modifying,pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,smart_LipoPS_modifying,pfscan_Filamin/ABP280_repeat-like	-	no_errors	KDELC1	HGNC	ENSG00000134901	tier1	-	-	77	0	0.00	47	19	28.36
KDM6A	0	genome.wustl.edu	37	X	44942753	44942754	+	In_Frame_Ins	INS	-	-	GTC			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	44942753	44942754	-	GTC	INS	KDM6A	ENST00000382899	human	ensembl	74_37	+1	known	in_frame_ins	c.3354_3355	p.1120in_frame_insV	0.983:1.000	smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TPR_1,smart_TPR_repeat,smart_JmjC_dom,pfscan_JmjC_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KDM6A	HGNC	ENSG00000147050	tier1			47	0	0.00	50	7	12.28
KGFLP2	0	genome.wustl.edu	37	9	41962645	41962645	+	RNA	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	41962645	41962645	C	G	SNP	KGFLP2	ENST00000454645	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-204M4.2	Clone_based_vega_gene	ENSG00000204837	tier1	-	-	97	0	0.00	73	10	12.05
KHDC3L	0	genome.wustl.edu	37	6	74073496	74073496	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	74073496	74073496	G	A	SNP	KHDC3L	ENST00000370367	human	ensembl	74_37	+1	known	silent	c.567	p.S189	0.000	NULL	NULL	-	no_errors	KHDC3L	HGNC	ENSG00000203908	tier1	-	-	66	0	0.00	42	18	30.00
KIAA0319	0	genome.wustl.edu	37	6	24578460	24578460	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	24578460	24578460	A	G	SNP	KIAA0319	ENST00000378214	human	ensembl	74_37	-1	known	silent	c.1383	p.D461	1.000	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_Fibronectin_type3,smart_PKD/Chitinase_dom	pfam_PKD/REJ-like,superfamily_PKD_dom,smart_MANSC_N,smart_Fibronectin_type3,smart_PKD/Chitinase_dom,pfscan_MANSC,pfscan_PKD_dom	-	no_errors	KIAA0319	HGNC	ENSG00000137261	tier1	-	-	59	0	0.00	45	14	23.73
KIAA0754	0	genome.wustl.edu	37	1	39876971	39876971	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	39876971	39876971	A	-	DEL	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	frame_shift_del	c.626	p.K210fs	0.979	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	tier1			73	0	0.00	71	10	12.35
KIAA1109	0	genome.wustl.edu	37	4	123265671	123265671	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	123265671	123265671	A	G	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.12688	p.S4230G	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	128	0	0.00	68	46	40.35
KIAA1429	0	genome.wustl.edu	37	8	95539214	95539214	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	95539214	95539214	A	G	SNP	KIAA1429	ENST00000297591	human	ensembl	74_37	-1	known	silent	c.1258	p.L420	0.701	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	tier1	-	-	134	0	0.00	159	43	21.29
KIAA1549L	0	genome.wustl.edu	37	11	33564392	33564392	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	33564392	33564392	C	T	SNP	KIAA1549L	ENST00000389726	human	ensembl	74_37	+1	known	missense	c.392	p.A131V	0.016	NULL	NULL	-	no_errors	KIAA1549L	HGNC	ENSG00000110427	tier1	-	-	44	0	0.00	28	16	36.36
KIAA1958	0	genome.wustl.edu	37	9	115337525	115337525	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	115337525	115337525	A	G	SNP	KIAA1958	ENST00000536272	human	ensembl	74_37	+1	known	missense	c.1165	p.I389V	1.000	NULL	pfam_DUF3504,superfamily_Integrase_Lambda-type_N	-	no_errors	KIAA1958	HGNC	ENSG00000165185	tier1	-	-	46	0	0.00	21	16	43.24
KIAA2018	0	genome.wustl.edu	37	3	113376116	113376116	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	113376116	113376116	C	T	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	silent	c.4413	p.Q1471	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542				50	0	0.00	44	7	13.73
KIF16B	0	genome.wustl.edu	37	20	16348120	16348120	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	16348120	16348120	A	-	DEL	KIF16B	ENST00000408042	human	ensembl	74_37	-1	known	frame_shift_del	c.3850	p.Y1284fs	0.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	tier1			105	0	0.00	94	19	16.81
KIF5B	0	genome.wustl.edu	37	10	32311796	32311796	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	32311796	32311796	A	G	SNP	KIF5B	ENST00000302418	human	ensembl	74_37	-1	known	missense	c.1894	p.C632R	0.985	superfamily_P-loop_NTPase	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF5B	HGNC	ENSG00000170759	tier1	-	-	114	0	0.00	89	33	27.05
KIF6	0	genome.wustl.edu	37	6	39682520	39682520	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	39682520	39682520	C	A	SNP	KIF6	ENST00000287152	human	ensembl	74_37	-1	known	missense	c.199	p.D67Y	0.810	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF6	HGNC	ENSG00000164627	tier1	-	-	33	0	0.00	30	9	23.08
KIF7	0	genome.wustl.edu	37	15	90171922	90171922	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	90171922	90171922	G	-	DEL	KIF7	ENST00000394412	human	ensembl	74_37	-1	known	frame_shift_del	c.3760	p.L1254fs	0.001	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF7	HGNC	ENSG00000166813	tier1			65	0	0.00	42	20	32.26
KLHDC10	0	genome.wustl.edu	37	7	129756488	129756488	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	129756488	129756488	G	A	SNP	KLHDC10	ENST00000335420	human	ensembl	74_37	+1	known	missense	c.457	p.E153K	1.000	NULL	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	-	no_errors	KLHDC10	HGNC	ENSG00000128607	tier1	-	-	59	0	0.00	49	15	23.44
KLHDC2	0	genome.wustl.edu	37	14	50246976	50246976	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	50246976	50246976	A	G	SNP	KLHDC2	ENST00000298307	human	ensembl	74_37	+1	known	silent	c.819	p.L273	0.994	NULL	pfam_Kelch_2	-	no_errors	KLHDC2	HGNC	ENSG00000165516	tier1	-	-	141	0	0.00	103	50	32.68
KLK12	0	genome.wustl.edu	37	19	51535064	51535064	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	51535064	51535064	G	A	SNP	KLK12	ENST00000531374	human	ensembl	74_37	-1	known	silent	c.525	p.V175	0.000	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK12	HGNC	ENSG00000186474	tier1	-	-	112	0	0.00	90	47	34.31
KMO	0	genome.wustl.edu	37	1	241753557	241753558	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	241753557	241753558	-	A	INS	KMO	ENST00000366559	human	ensembl	74_37	+1	known	frame_shift_ins	c.1252_1253	p.V421fs	1.000:1.000	NULL	pfam_mOase_FAD-bd,prints_Rng_hydrolase-like	-	no_errors	KMO	HGNC	ENSG00000117009	tier1			115	0	0.00	90	21	18.92
KMT2B	0	genome.wustl.edu	37	19	36219906	36219906	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	36219906	36219906	G	A	SNP	KMT2B	ENST00000222270	human	ensembl	74_37	+1	known	missense	c.4708	p.A1570T	0.717	pirsf_MeTrfase_trithorax	pirsf_MeTrfase_trithorax,pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KMT2B	Uniprot_gn	ENSG00000272333	tier1	-	-	87	0	0.00	33	29	46.77
KMT2C	0	genome.wustl.edu	37	7	152012386	152012386	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	152012386	152012386	T	-	DEL	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	frame_shift_del	c.427	p.S143fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1			95	0	0.00	61	22	26.51
KPRP	0	genome.wustl.edu	37	1	152733155	152733155	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	152733155	152733155	G	T	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	missense	c.1091	p.G364V	0.940	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	tier1	-	-	69	0	0.00	27	17	38.64
KPRP	0	genome.wustl.edu	37	1	152733604	152733604	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	152733604	152733604	G	T	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	missense	c.1540	p.G514C	0.879	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	tier1	-	-	58	0	0.00	41	18	30.51
KRAS	0	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	25398284	25398284	C	T	SNP	KRAS	ENST00000256078	human	ensembl	74_37	-1	known	missense	c.35	p.G12D	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	KRAS	HGNC	ENSG00000133703	tier1	rs121913529	-	75	0	0.00	53	20	27.40
KRT5	0	genome.wustl.edu	37	12	52911475	52911475	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	52911475	52911475	G	A	SNP	KRT5	ENST00000252242	human	ensembl	74_37	-1	known	missense	c.991	p.R331C	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT5	HGNC	ENSG00000186081	tier1	rs61297109	-	128	0	0.00	73	42	36.52
KRTAP5-4	0	genome.wustl.edu	37	11	1643024	1643025	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	1643024	1643025	0	C	INS	KRTAP5-4	ENST00000399682	human	ensembl	74_37	-1	known	frame_shift_ins	c.300_299	p.C101fs	1.000:1.000	NULL	NULL	-	no_errors	KRTAP5-4	HGNC	ENSG00000241598				118	0	0.00	105	15	12.50
L3MBTL4	0	genome.wustl.edu	37	18	5960137	5960137	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	5960137	5960137	A	G	SNP	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	missense	c.1660	p.S554P	1.000	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655	tier1	-	-	73	0	0.00	43	22	33.85
L3MBTL4	0	genome.wustl.edu	37	18	6243371	6243371	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	6243371	6243371	A	0	DEL	L3MBTL4	ENST00000284898	human	ensembl	74_37	-1	known	frame_shift_del	c.382	p.W128fs	1.000	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_SAM_type1,pfam_Znf_C2HC,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt,pfscan_SAM	-	no_errors	L3MBTL4	HGNC	ENSG00000154655				161	0	0.00	161	13	7.47
LAMA2	0	genome.wustl.edu	37	6	129714208	129714209	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	129714208	129714209	-	A	INS	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	frame_shift_ins	c.5253_5254	p.V1753fs	0.999:0.998	pfam_Laminin_I,superfamily_t-SNARE	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1			53	0	0.00	39	13	25.00
LAMA2	0	genome.wustl.edu	37	6	129785445	129785445	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	129785445	129785445	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.7003	p.E2335K	1.000	superfamily_ConA-like_lec_gl_sf	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	95	0	0.00	61	33	35.11
LAMA5	0	genome.wustl.edu	37	20	60885270	60885270	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	60885270	60885270	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	silent	c.10698	p.T3566	0.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	tier1	-	-	40	0	0.00	34	13	27.66
LARP7	0	genome.wustl.edu	37	4	113565896	113565896	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	113565896	113565896	A	-	DEL	LARP7	ENST00000324052	human	ensembl	74_37	+1	known	frame_shift_del	c.71	p.K26fs	1.000	NULL	pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La	-	no_errors	LARP7	HGNC	ENSG00000174720	tier1			64	0	0.00	37	14	27.45
LEPREL2	0	genome.wustl.edu	37	12	6946910	6946910	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	6946910	6946910	C	T	SNP	LEPREL2	ENST00000396725	human	ensembl	74_37	+1	known	missense	c.1723	p.R575C	1.000	smart_Pro_4_hyd_alph	smart_Pro_4_hyd_alph	-	no_errors	LEPREL2	HGNC	ENSG00000110811	tier1	-	-	14	0	0.00	12	5	29.41
LGI3	0	genome.wustl.edu	37	8	22006197	22006197	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	22006197	22006197	G	A	SNP	LGI3	ENST00000306317	human	ensembl	74_37	-1	known	missense	c.1123	p.R375C	1.000	pfam_EPTP,pfscan_EAR	pfam_EPTP,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_EAR	-	no_errors	LGI3	HGNC	ENSG00000168481	tier1	rs138233100	-	57	0	0.00	55	17	23.61
LGI3	0	genome.wustl.edu	37	8	22012916	22012916	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	22012916	22012916	C	T	SNP	LGI3	ENST00000518365	human	ensembl	74_37	-1	known	missense	c.313	p.A105T	0.996	NULL	NULL	-	no_errors	LGI3	HGNC	ENSG00000168481	tier1	-	-	161	0	0.00	128	25	16.34
LHFPL3	0	genome.wustl.edu	37	7	103969530	103969530	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	103969530	103969530	C	T	SNP	LHFPL3	ENST00000535008	human	ensembl	74_37	+1	known	silent	c.303	p.P101	1.000	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL3	HGNC	ENSG00000187416	tier1	-	-	86	0	0.00	49	26	34.67
LINC00691	0	genome.wustl.edu	37	3	24138195	24138196	+	RNA	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	24138195	24138196	-	T	INS	LINC00691	ENST00000436123	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.509:0.516	-	-	-	no_errors	LINC00691	HGNC	ENSG00000224074	tier1			8	0	0.00	4	2	33.33
LLGL1	0	genome.wustl.edu	37	17	18137611	18137611	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	18137611	18137611	C	T	SNP	LLGL1	ENST00000316843	human	ensembl	74_37	+1	known	missense	c.739	p.R247C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_LLGL2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,prints_Lethal2_giant	-	no_errors	LLGL1	HGNC	ENSG00000131899	tier1	-	-	29	0	0.00	9	4	30.77
LMO7	0	genome.wustl.edu	37	13	76378527	76378527	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	76378527	76378527	C	T	SNP	LMO7	ENST00000357063	human	ensembl	74_37	+1	known	missense	c.920	p.A307V	0.992	NULL	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	tier1	-	-	94	0	0.00	67	27	28.72
LMTK3	0	genome.wustl.edu	37	19	49000699	49000699	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	49000699	49000699	T	C	SNP	LMTK3	ENST00000270238	human	ensembl	74_37	-1	known	silent	c.3714	p.R1238	0.962	smart_Ser/Thr_dual-sp_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	LMTK3	HGNC	ENSG00000142235	tier1	-	-	80	0	0.00	44	40	47.62
LMX1A	0	genome.wustl.edu	37	1	165218837	165218837	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	165218837	165218837	C	T	SNP	LMX1A	ENST00000294816	human	ensembl	74_37	-1	known	missense	c.304	p.A102T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeobox_dom,pfscan_Znf_LIM,pfscan_Homeobox_dom	-	no_errors	LMX1A	HGNC	ENSG00000162761	tier1	-	-	26	0	0.00	10	7	41.18
LNX1	0	genome.wustl.edu	37	4	54362516	54362516	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	54362516	54362516	G	A	SNP	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	missense	c.1024	p.R342C	0.939	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,superfamily_PDZ,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING	-	no_errors	LNX1	HGNC	ENSG00000072201				25	0	0.00	28	4	12.50
LOC100132891	0	genome.wustl.edu	37	8	72755898	72755898	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	72755898	72755898	G	A	SNP	LOC100132891	ENST00000537896	human	ensembl	74_37	+1	known	missense	c.262	p.V88I	1.000	NULL	NULL	-	no_errors	RP11-383H13.1	Clone_based_vega_gene	ENSG00000235531	tier1	-	-	58	0	0.00	39	20	33.90
LOC100505624	0	genome.wustl.edu	37	2	27558948	27558948	+	RNA	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	27558948	27558948	T	C	SNP	LOC100505624	ENST00000585326	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC109828.1	Clone_based_vega_gene	ENSG00000234945	tier1	-	-	34	0	0.00	31	18	36.73
LPHN3	0	genome.wustl.edu	37	4	62758427	62758427	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	62758427	62758427	C	A	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.1534	p.L512I	0.066	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	tier1	-	-	69	0	0.00	47	22	31.88
LPO	0	genome.wustl.edu	37	17	56329565	56329565	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	56329565	56329565	C	T	SNP	LPO	ENST00000262290	human	ensembl	74_37	+1	known	missense	c.803	p.A268V	0.001	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	LPO	HGNC	ENSG00000167419	tier1	-	-	57	0	0.00	34	10	22.73
LRAT	0	genome.wustl.edu	37	4	155665563	155665563	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	155665563	155665563	G	A	SNP	LRAT	ENST00000336356	human	ensembl	74_37	+1	known	missense	c.85	p.A29T	0.000	NULL	pfam_LRAT-like_dom	-	no_errors	LRAT	HGNC	ENSG00000121207	tier1	-	-	60	0	0.00	38	18	32.14
LRCH3	0	genome.wustl.edu	37	3	197598223	197598223	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	197598223	197598223	C	G	SNP	LRCH3	ENST00000438796	human	ensembl	74_37	+1	known	missense	c.2020	p.L674V	0.996	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_Leu-rich_rpt,pfam_CH-domain,superfamily_CH-domain,smart_Leu-rich_rpt_typical-subtyp,smart_CH-domain,pfscan_CH-domain	-	no_errors	LRCH3	HGNC	ENSG00000186001	tier1	-	-	219	0	0.00	116	38	24.68
LRFN1	0	genome.wustl.edu	37	19	39798459	39798459	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	39798459	39798459	G	A	SNP	LRFN1	ENST00000248668	human	ensembl	74_37	-1	known	silent	c.2130	p.Y710	0.987	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN1	HGNC	ENSG00000128011	tier1	-	-	25	0	0.00	18	11	37.93
LRP1	0	genome.wustl.edu	37	12	57552304	57552304	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	57552304	57552304	C	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	missense	c.1681	p.P561T	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	tier1	-	-	32	0	0.00	22	12	34.29
LRP1B	0	genome.wustl.edu	37	2	141032033	141032034	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	141032033	141032034	-	C	INS	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	frame_shift_ins	c.13102_13101	p.H4367fs	0.999:0.016	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1			73	0	0.00	60	24	28.57
LRP1B	0	genome.wustl.edu	37	2	141819702	141819702	+	Missense_Mutation	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	141819702	141819702	T	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.1154	p.Y385F	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	153	0	0.00	88	46	34.33
LRRC16A	0	genome.wustl.edu	37	6	25452454	25452455	+	RNA	DEL	TT	TT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	25452454	25452455	TT	-	DEL	LRRC16A	ENST00000461945	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LRRC16A	HGNC	ENSG00000079691	tier1			84	0	0.00	65	19	22.62
LRRC32	0	genome.wustl.edu	37	11	76376953	76376953	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	76376953	76376953	G	T	SNP	LRRC32	ENST00000260061	human	ensembl	74_37	-1	known	missense	c.46	p.L16M	0.999	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC32	HGNC	ENSG00000137507	tier1	-	-	112	0	0.00	87	25	22.32
LRRTM1	0	genome.wustl.edu	37	2	80529673	80529673	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	80529673	80529673	C	G	SNP	LRRTM1	ENST00000295057	human	ensembl	74_37	-1	known	missense	c.1272	p.Q424H	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM1	HGNC	ENSG00000162951	tier1	-	-	41	0	0.00	38	21	35.59
LTBP1	0	genome.wustl.edu	37	2	33500130	33500130	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	33500130	33500130	G	A	SNP	LTBP1	ENST00000354476	human	ensembl	74_37	+1	known	missense	c.2845	p.A949T	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP1	HGNC	ENSG00000049323	tier1	-	-	103	0	0.00	76	31	28.97
LYST	0	genome.wustl.edu	37	1	235878512	235878512	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	235878512	235878512	A	-	DEL	LYST	ENST00000389793	human	ensembl	74_37	-1	known	frame_shift_del	c.9773	p.L3258fs	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,superfamily_ARM-type_fold,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	LYST	HGNC	ENSG00000143669	tier1			54	0	0.00	30	10	25.00
M6PR	0	genome.wustl.edu	37	12	9095102	9095102	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	9095102	9095102	C	-	DEL	M6PR	ENST00000000412	human	ensembl	74_37	-1	known	frame_shift_del	c.621	p.F208fs	0.715	prints_Man_6_P_rcpt	superfamily_Man6P_isomerase_rcpt-bd_dom,prints_Man_6_P_rcpt	-	no_errors	M6PR	HGNC	ENSG00000003056	tier1			112	0	0.00	71	20	21.98
MAG	0	genome.wustl.edu	37	19	35786566	35786566	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	35786566	35786566	T	C	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.97	p.F33L	1.000	smart_Ig_sub	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695	tier1	-	-	65	0	0.00	30	20	40.00
MAGEE2	0	genome.wustl.edu	37	X	75004754	75004754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	75004754	75004754	G	-	DEL	MAGEE2	ENST00000373359	human	ensembl	74_37	-1	known	frame_shift_del	c.133	p.Q45fs	0.008	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	tier1			48	0	0.00	35	13	27.08
MAK16	0	genome.wustl.edu	37	8	33346653	33346653	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	33346653	33346653	C	T	SNP	MAK16	ENST00000360128	human	ensembl	74_37	+1	known	nonsense	c.388	p.R130*	1.000	pirsf_Mak16	pfam_Mak16,pirsf_Mak16	-	no_errors	MAK16	HGNC	ENSG00000198042	tier1	-	-	66	0	0.00	70	29	29.29
MAP2	0	genome.wustl.edu	37	2	210561666	210561667	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	210561666	210561667	-	A	INS	MAP2	ENST00000360351	human	ensembl	74_37	+1	known	frame_shift_ins	c.4413_4414	p.T1473fs	1.000:1.000	pfam_MAP2_projctn	pfam_MAP2_projctn,pfam_MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	tier1			89	0	0.00	57	14	19.72
MAP3K15	0	genome.wustl.edu	37	X	19398294	19398294	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	19398294	19398294	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	missense	c.2533	p.A845T	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	tier1	-	-	16	0	0.00	8	4	33.33
MAP4K1	0	genome.wustl.edu	37	19	39078375	39078375	+	RNA	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	39078375	39078375	C	-	DEL	MAP4K1	ENST00000593196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	MAP4K1	HGNC	ENSG00000104814	tier1			21	0	0.00	14	5	26.32
MARCO	0	genome.wustl.edu	37	2	119699942	119699942	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	119699942	119699942	C	T	SNP	MARCO	ENST00000327097	human	ensembl	74_37	+1	known	silent	c.66	p.H22	0.005	NULL	pfam_Collagen,pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	MARCO	HGNC	ENSG00000019169	tier1	-	-	44	0	0.00	54	10	15.62
MB21D1	0	genome.wustl.edu	37	6	74138502	74138502	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	74138502	74138502	C	T	SNP	MB21D1	ENST00000370315	human	ensembl	74_37	-1	known	missense	c.1147	p.E383K	1.000	pfam_Mab-21_dom	pfam_Mab-21_dom	-	no_errors	MB21D1	HGNC	ENSG00000164430	tier1	-	-	117	0	0.00	94	26	21.67
MCHR1	0	genome.wustl.edu	37	22	41077263	41077263	+	Silent	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	41077263	41077263	C	A	SNP	MCHR1	ENST00000249016	human	ensembl	74_37	+1	known	silent	c.600	p.T200	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_MCH1_rcpt,prints_MCH_rcpt,prints_GPCR_Rhodpsn	-	no_errors	MCHR1	HGNC	ENSG00000128285	tier1	-	-	108	0	0.00	70	27	27.84
MCTP1	0	genome.wustl.edu	37	5	94230520	94230520	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	94230520	94230520	G	A	SNP	MCTP1	ENST00000515393	human	ensembl	74_37	-1	known	missense	c.1673	p.A558V	0.421	superfamily_C2_dom,smart_C2_dom	pfam_C2_dom,pfam_PRibTrfase_C,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_C2_dom	-	no_errors	MCTP1	HGNC	ENSG00000175471	tier1	-	-	50	0	0.00	30	14	31.82
MED14	0	genome.wustl.edu	37	X	40588606	40588607	+	RNA	DEL	AA	AA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	40588606	40588607	AA	-	DEL	MED14	ENST00000463072	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MED14	HGNC	ENSG00000180182	tier1			35	0	0.00	14	4	22.22
MED15	0	genome.wustl.edu	37	22	20918765	20918767	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	20918765	20918767	GCA	-	DEL	MED15	ENST00000263205	human	ensembl	74_37	+1	known	in_frame_del	c.480_482	p.Q164in_frame_del	0.694:0.988:1.000	pfam_Mediator_Med15_met	pfam_Mediator_Med15_met	-	no_errors	MED15	HGNC	ENSG00000099917	tier1			67	0	0.00	54	13	19.40
MED16	0	genome.wustl.edu	37	19	868170	868170	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	868170	868170	C	T	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	silent	c.2565	p.P855	0.000	NULL	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	tier1	-	-	16	0	0.00	14	8	36.36
MED16	0	genome.wustl.edu	37	19	891109	891109	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	891109	891109	G	A	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.23	p.A8V	0.000	NULL	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	tier1	-	-	87	0	0.00	60	32	34.78
MEGF11	0	genome.wustl.edu	37	15	66206269	66206269	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	66206269	66206269	C	T	SNP	MEGF11	ENST00000409699	human	ensembl	74_37	-1	known	missense	c.2516	p.S839N	1.000	NULL	pfam_EGF_laminin,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_EMI_domain	-	no_errors	MEGF11	HGNC	ENSG00000157890	tier1	-	-	40	0	0.00	22	16	42.11
MEGF9	0	genome.wustl.edu	37	9	123476279	123476279	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	123476279	123476279	G	A	SNP	MEGF9	ENST00000426959	human	ensembl	74_37	-1	known	missense	c.334	p.L112F	0.001	NULL	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF9	HGNC	ENSG00000106780	tier1	-	-	19	0	0.00	11	16	59.26
MEIS3	0	genome.wustl.edu	37	19	47910638	47910638	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	47910638	47910638	C	T	SNP	MEIS3	ENST00000559524	human	ensembl	74_37	-1	known	silent	c.1044	p.T348	0.990	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	MEIS3	HGNC	ENSG00000105419	tier1	-	-	110	0	0.00	68	24	26.09
MEOX2	0	genome.wustl.edu	37	7	15652021	15652021	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	15652021	15652021	C	T	SNP	MEOX2	ENST00000262041	human	ensembl	74_37	-1	known	silent	c.906	p.A302	0.311	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	MEOX2	HGNC	ENSG00000106511	tier1	-	-	63	0	0.00	45	28	38.36
MESP2	0	genome.wustl.edu	37	15	90320499	90320499	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	90320499	90320499	C	T	SNP	MESP2	ENST00000341735	human	ensembl	74_37	+1	known	missense	c.911	p.A304V	0.794	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MESP2	HGNC	ENSG00000188095	tier1	-	-	11	0	0.00	3	6	66.67
MFAP3L	0	genome.wustl.edu	37	4	170913249	170913249	+	Silent	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	170913249	170913249	G	T	SNP	MFAP3L	ENST00000361618	human	ensembl	74_37	-1	known	silent	c.510	p.T170	0.998	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MFAP3L	HGNC	ENSG00000198948	tier1	-	-	91	0	0.00	90	10	10.00
MGA	0	genome.wustl.edu	37	15	42052726	42052726	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	42052726	42052726	G	A	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.7397	p.R2466Q	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	tier1	-	-	42	0	0.00	21	9	30.00
MGAM	0	genome.wustl.edu	37	7	141780719	141780719	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	141780719	141780719	T	C	SNP	MGAM	ENST00000475668	human	ensembl	74_37	+1	putative	silent	c.5976	p.I1992	0.756	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	49	0	0.00	39	15	27.78
MIA3	0	genome.wustl.edu	37	1	222801059	222801059	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	222801059	222801059	A	-	DEL	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	frame_shift_del	c.497	p.N168fs	0.008	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	tier1			61	0	0.00	44	20	31.25
MIA3	0	genome.wustl.edu	37	1	222838880	222838880	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	222838880	222838880	G	A	SNP	MIA3	ENST00000344441	human	ensembl	74_37	+1	known	silent	c.5643	p.P1881	0.001	NULL	pfam_SH3_2,superfamily_SH3_domain	-	no_errors	MIA3	HGNC	ENSG00000154305	tier1	-	-	143	0	0.00	117	45	27.78
MICAL3	0	genome.wustl.edu	37	22	18301788	18301788	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	18301788	18301788	G	-	DEL	MICAL3	ENST00000441493	human	ensembl	74_37	-1	known	frame_shift_del	c.3639	p.S1214fs	0.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	tier1			26	0	0.00	19	4	17.39
MIR1208	0	genome.wustl.edu	37	8	129162432	129162433	+	RNA	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	129162432	129162433	-	G	INS	MIR1208	ENST00000408334	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	MIR1208	HGNC	ENSG00000221261	tier1			46	0	0.00	42	14	25.00
MIR663B	0	genome.wustl.edu	37	2	133014557	133014557	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	133014557	133014557	G	A	SNP	MIR663B	ENST00000408361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	MIR663B	HGNC	ENSG00000221288	tier1	-	-	36	0	0.00	33	6	15.38
MIS18A	0	genome.wustl.edu	37	21	33642777	33642777	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	33642777	33642777	C	T	SNP	MIS18A	ENST00000290130	human	ensembl	74_37	-1	known	silent	c.465	p.T155	0.858	NULL	NULL	-	no_errors	MIS18A	HGNC	ENSG00000159055	tier1	-	-	68	0	0.00	39	13	25.00
MLLT4	0	genome.wustl.edu	37	6	168314926	168314926	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	168314926	168314926	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	74_37	+1	known	nonsense	c.2116	p.R706*	1.000	pfscan_Dilute	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	tier1	-	-	60	0	0.00	43	25	36.76
MMP19	0	genome.wustl.edu	37	12	56232290	56232290	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	56232290	56232290	T	C	SNP	MMP19	ENST00000394182	human	ensembl	74_37	-1	known	missense	c.31	p.N11D	0.002	smart_Hemopexin-like_repeat	pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	-	no_errors	MMP19	HGNC	ENSG00000123342	tier1	-	-	30	0	0.00	19	10	34.48
MOGAT2	0	genome.wustl.edu	37	11	75439013	75439013	+	Splice_Site	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	75439013	75439013	A	C	SNP	MOGAT2	ENST00000198801	human	ensembl	74_37	+1	known	splice_site	c.476-2	e4-2	1.000	-	-	-	no_errors	MOGAT2	HGNC	ENSG00000166391	tier1	-	-	57	0	0.00	32	46	58.97
MRRF	0	genome.wustl.edu	37	9	125033141	125033141	+	Splice_Site	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	125033141	125033141	A	T	SNP	MRRF	ENST00000344641	human	ensembl	74_37	+1	known	splice_site	c.1-2	e1-2	0.295	-	-	-	no_errors	MRRF	HGNC	ENSG00000148187	tier1	-	-	61	0	0.00	69	26	27.37
MSANTD4	0	genome.wustl.edu	37	11	105880739	105880739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	105880739	105880739	A	-	DEL	MSANTD4	ENST00000301919	human	ensembl	74_37	-1	known	frame_shift_del	c.561	p.F187fs	0.903	NULL	NULL	-	no_errors	MSANTD4	HGNC	ENSG00000170903	tier1			130	0	0.00	81	32	28.32
MSH3	0	genome.wustl.edu	37	5	80074607	80074607	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	80074607	80074607	G	A	SNP	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	missense	c.2387	p.R796Q	1.000	pfam_DNA_mismatch_repair_MutS_core,superfamily_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_core	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1	-	-	92	0	0.00	38	26	40.62
MTMR10	0	genome.wustl.edu	37	15	31251156	31251156	+	Splice_Site	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	31251156	31251156	T	C	SNP	MTMR10	ENST00000435680	human	ensembl	74_37	-1	known	splice_site	c.847-2	e9-2	0.999	-	-	-	no_errors	MTMR10	HGNC	ENSG00000166912	tier1	-	-	108	0	0.00	44	26	37.14
MTMR11	0	genome.wustl.edu	37	1	149901495	149901495	+	RNA	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	149901495	149901495	A	T	SNP	MTMR11	ENST00000492824	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MTMR11	HGNC	ENSG00000014914	tier1	-	-	175	0	0.00	125	59	32.07
MTR	0	genome.wustl.edu	37	1	236958928	236958928	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	236958928	236958928	G	A	SNP	MTR	ENST00000418145	human	ensembl	74_37	+1	known	nonsense	c.308	p.W103*	0.000	pfscan_S_MeTrfase	pfam_S_MeTrfase,superfamily_S_MeTrfase,pfscan_S_MeTrfase	-	no_errors	MTR	HGNC	ENSG00000116984	tier1	-	-	22	0	0.00	20	6	23.08
MUC17	0	genome.wustl.edu	37	7	100675070	100675070	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	100675070	100675070	A	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.373	p.S125G	0.002	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	-	-	87	0	0.00	61	29	32.22
MUC17	0	genome.wustl.edu	37	7	100679591	100679591	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	100679591	100679591	C	G	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.4894	p.L1632V	0.005	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	-	-	410	0	0.00	234	132	36.07
MUC5B	0	genome.wustl.edu	37	11	1262090	1262091	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	1262090	1262091	-	C	INS	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	frame_shift_ins	c.3989_3990	p.V1332fs	0.011:0.013	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1			19	0	0.00	13	9	40.91
MUL1	0	genome.wustl.edu	37	1	20827645	20827645	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	20827645	20827645	G	A	SNP	MUL1	ENST00000264198	human	ensembl	74_37	-1	known	silent	c.597	p.G199	0.130	pfam_MULAN	pfam_MULAN,pfscan_Znf_RING	-	no_errors	MUL1	HGNC	ENSG00000090432	tier1	-	-	120	0	0.00	79	42	34.43
MXRA8	0	genome.wustl.edu	37	1	1290267	1290267	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	1290267	1290267	A	G	SNP	MXRA8	ENST00000445648	human	ensembl	74_37	-1	known	silent	c.744	p.D248	0.625	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MXRA8	HGNC	ENSG00000162576	tier1	-	-	15	0	0.00	13	11	45.83
MYH7	0	genome.wustl.edu	37	14	23894567	23894567	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	23894567	23894567	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.2347	p.R783C	0.328	superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	58	0	0.00	38	24	38.71
MYL1	0	genome.wustl.edu	37	2	211179766	211179767	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	211179766	211179767	TT	-	DEL	MYL1	ENST00000352451	human	ensembl	74_37	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	MYL1	HGNC	ENSG00000168530	tier1			258	0	0.00	242	70	22.44
MYO18A	0	genome.wustl.edu	37	17	27417091	27417091	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	27417091	27417091	T	C	SNP	MYO18A	ENST00000354329	human	ensembl	74_37	-1	known	missense	c.5414	p.E1805G	1.000	pfam_Myosin_tail	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_P-loop_NTPase,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	tier1	-	-	22	0	0.00	16	6	26.09
MYOM1	0	genome.wustl.edu	37	18	3168966	3168967	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	3168966	3168967	-	G	INS	MYOM1	ENST00000356443	human	ensembl	74_37	-1	known	frame_shift_ins	c.1188_1187	p.Y397fs	0.269:1.000	pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM1	HGNC	ENSG00000101605	tier1			38	0	0.00	26	9	25.71
NAALADL1	0	genome.wustl.edu	37	11	64820981	64820981	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64820981	64820981	G	A	SNP	NAALADL1	ENST00000358658	human	ensembl	74_37	-1	known	missense	c.1060	p.R354C	0.939	NULL	pfam_TFR-like_dimer_dom,pfam_Peptidase_M28,pfam_Protease-assoc_domain,superfamily_TFR-like_dimer_dom	-	no_errors	NAALADL1	HGNC	ENSG00000168060	tier1	-	-	58	0	0.00	56	26	31.71
NACAP1	0	genome.wustl.edu	37	8	102381883	102381883	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	102381883	102381883	A	-	DEL	NACAP1	ENST00000419462	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.879	-	-	-	no_errors	NACAP1	HGNC	ENSG00000228224	tier1			26	0	0.00	28	11	28.21
NADSYN1	0	genome.wustl.edu	37	11	71193946	71193946	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	71193946	71193946	C	-	DEL	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	frame_shift_del	c.1202	p.Q403fs	0.919	pfam_NAD/GMP_synthase,pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890	tier1			61	0	0.00	52	9	14.75
NAPEPLD	0	genome.wustl.edu	37	7	102769197	102769197	+	Silent	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	102769197	102769197	A	C	SNP	NAPEPLD	ENST00000455523	human	ensembl	74_37	-1	known	silent	c.246	p.S82	0.000	NULL	NULL	-	no_errors	NAPEPLD	HGNC	ENSG00000161048	tier1	-	-	96	0	0.00	54	29	34.94
NARS	0	genome.wustl.edu	37	18	55274524	55274524	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	55274524	55274524	A	G	SNP	NARS	ENST00000256854	human	ensembl	74_37	-1	known	silent	c.843	p.G281	0.000	pfam_aa-tRNA-synt_II,pfscan_aa-tRNA-synth_II,tigrfam_Asn-tRNA-ligase	pfam_aa-tRNA-synt_II,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pfscan_aa-tRNA-synth_II,prints_Asp/Asn-tRNA-synth_IIb,tigrfam_Asn-tRNA-ligase	-	no_errors	NARS	HGNC	ENSG00000134440	tier1	-	-	92	0	0.00	64	26	28.89
NAT9	0	genome.wustl.edu	37	17	72767908	72767908	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	72767908	72767908	G	A	SNP	NAT9	ENST00000357814	human	ensembl	74_37	-1	known	silent	c.579	p.H193	0.089	NULL	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase	-	no_errors	NAT9	HGNC	ENSG00000109065	tier1	-	-	36	0	0.00	25	11	30.56
NAV1	0	genome.wustl.edu	37	1	201777592	201777594	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	201777592	201777594	GAG	-	DEL	NAV1	ENST00000367296	human	ensembl	74_37	+1	known	in_frame_del	c.3892_3894	p.E1301in_frame_del	0.983:1.000:1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	tier1			21	0	0.00	16	5	23.81
NBAS	0	genome.wustl.edu	37	2	15618356	15618356	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	15618356	15618356	T	-	DEL	NBAS	ENST00000281513	human	ensembl	74_37	-1	known	frame_shift_del	c.1141	p.I381fs	0.998	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	tier1			42	0	0.00	30	20	40.00
NCAM1	0	genome.wustl.edu	37	11	113102926	113102926	+	Nonsense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	113102926	113102926	C	A	SNP	NCAM1	ENST00000316851	human	ensembl	74_37	+1	known	nonsense	c.1245	p.Y415*	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM1	HGNC	ENSG00000149294	tier1	-	-	26	0	0.00	25	12	32.43
NCF4	0	genome.wustl.edu	37	22	37271972	37271972	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	37271972	37271972	A	G	SNP	NCF4	ENST00000397147	human	ensembl	74_37	+1	known	missense	c.905	p.Q302R	0.002	NULL	pfam_Phox,pfam_SH3_domain,pfam_SH3_2,superfamily_Phox,superfamily_SH3_domain,smart_Phox,smart_SH3_domain,pfscan_Phox,pfscan_SH3_domain,prints_NCF_P40,prints_p67phox	-	no_errors	NCF4	HGNC	ENSG00000100365	tier1	-	-	34	0	0.00	31	7	18.42
NCKAP5	0	genome.wustl.edu	37	2	133489456	133489456	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	133489456	133489456	G	A	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.5297	p.A1766V	1.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	tier1	-	-	79	0	0.00	66	21	24.14
NCKAP5	0	genome.wustl.edu	37	2	133542575	133542575	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	133542575	133542575	G	T	SNP	NCKAP5	ENST00000317721	human	ensembl	74_37	-1	known	missense	c.1809	p.D603E	0.000	NULL	NULL	-	no_errors	NCKAP5	HGNC	ENSG00000176771	tier1	-	-	30	0	0.00	32	12	27.27
NCOA3	0	genome.wustl.edu	37	20	46264296	46264296	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	46264296	46264296	T	C	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	missense	c.1343	p.M448T	1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151	tier1	-	-	55	0	0.00	43	23	34.85
NCOA3	0	genome.wustl.edu	37	20	46279842	46279842	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	46279842	46279842	G	A	SNP	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	silent	c.3768	p.Q1256	0.555	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151	tier1	-	-	52	0	0.00	62	7	10.14
NCOA6	0	genome.wustl.edu	37	20	33345721	33345723	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	33345721	33345723	TGC	-	DEL	NCOA6	ENST00000359003	human	ensembl	74_37	-1	known	in_frame_del	c.830_828	p.Q280in_frame_del	1.000:1.000:0.999	NULL	NULL	-	no_errors	NCOA6	HGNC	ENSG00000198646	tier1			28	0	0.00	34	5	12.82
NCOR1	0	genome.wustl.edu	37	17	15971253	15971254	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	15971253	15971254	-	G	INS	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	frame_shift_ins	c.4696_4695	p.T1565fs	1.000:0.997	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	tier1			54	0	0.00	36	12	25.00
NCOR1	0	genome.wustl.edu	37	17	16029446	16029446	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	16029446	16029446	T	-	DEL	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	frame_shift_del	c.1584	p.E529fs	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	tier1			31	0	0.00	15	11	42.31
NCOR1	0	genome.wustl.edu	37	17	16097825	16097825	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	16097825	16097825	T	G	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	missense	c.59	p.Y20S	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027				15	0	0.00	20	6	23.08
NDRG1	0	genome.wustl.edu	37	8	134266805	134266805	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	134266805	134266805	C	A	SNP	NDRG1	ENST00000323851	human	ensembl	74_37	-1	known	missense	c.571	p.V191L	1.000	pfam_Ndr	pfam_Ndr	-	no_errors	NDRG1	HGNC	ENSG00000104419	tier1	-	-	28	0	0.00	20	12	37.50
NDUFA10	0	genome.wustl.edu	37	2	240946734	240946734	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	240946734	240946734	T	-	DEL	NDUFA10	ENST00000252711	human	ensembl	74_37	-1	known	frame_shift_del	c.803	p.K268fs	0.947	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	pfam_Deoxynucleoside_kinase,superfamily_P-loop_NTPase,pirsf_NADH_UbQ_OxRdtase_42KD_su	-	no_errors	NDUFA10	HGNC	ENSG00000130414	tier1			27	0	0.00	18	10	35.71
NDUFAF6	0	genome.wustl.edu	37	8	96047735	96047736	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	96047735	96047736	-	A	INS	NDUFAF6	ENST00000396124	human	ensembl	74_37	+1	known	frame_shift_ins	c.351_352	p.T119fs	1.000:1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth	-	no_errors	NDUFAF6	HGNC	ENSG00000156170	tier1			70	0	0.00	89	19	17.59
NELL2	0	genome.wustl.edu	37	12	45108482	45108482	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	45108482	45108482	C	G	SNP	NELL2	ENST00000437801	human	ensembl	74_37	-1	known	missense	c.1187	p.R396T	0.995	NULL	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL2	HGNC	ENSG00000184613	tier1	-	-	67	0	0.00	41	19	31.67
NFASC	0	genome.wustl.edu	37	1	204924033	204924033	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	204924033	204924033	C	-	DEL	NFASC	ENST00000367172	human	ensembl	74_37	+1	known	frame_shift_del	c.489	p.P165fs	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NFASC	HGNC	ENSG00000163531	tier1			217	0	0.00	144	44	23.40
NINL	0	genome.wustl.edu	37	20	25462613	25462613	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	25462613	25462613	C	T	SNP	NINL	ENST00000278886	human	ensembl	74_37	-1	known	missense	c.1801	p.G601S	0.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	NINL	HGNC	ENSG00000101004	tier1	-	-	94	0	0.00	71	32	31.07
NIT1	0	genome.wustl.edu	37	1	161090352	161090352	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	161090352	161090352	C	T	SNP	NIT1	ENST00000368009	human	ensembl	74_37	+1	known	missense	c.781	p.R261C	0.965	superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	NIT1	HGNC	ENSG00000158793	tier1	-	-	52	0	0.00	36	17	32.08
NKAP	0	genome.wustl.edu	37	X	119065934	119065934	+	Silent	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	119065934	119065934	T	A	SNP	NKAP	ENST00000371410	human	ensembl	74_37	-1	known	silent	c.888	p.P296	0.964	NULL	pfam_DUF926	-	no_errors	NKAP	HGNC	ENSG00000101882	tier1	-	-	25	0	0.00	20	13	39.39
NKX6-2	0	genome.wustl.edu	37	10	134598862	134598862	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	134598862	134598862	G	A	SNP	NKX6-2	ENST00000368592	human	ensembl	74_37	-1	known	silent	c.501	p.F167	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	NKX6-2	HGNC	ENSG00000148826	tier1	-	-	31	0	0.00	22	12	34.29
NLRP3	0	genome.wustl.edu	37	1	247607265	247607267	+	RNA	DEL	CTT	CTT	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	247607265	247607267	CTT	-	DEL	NLRP3	ENST00000532083	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.007	-	-	-	no_errors	NLRP3	HGNC	ENSG00000162711	tier1			25	0	0.00	11	6	35.29
NLRP8	0	genome.wustl.edu	37	19	56466477	56466477	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	56466477	56466477	C	T	SNP	NLRP8	ENST00000291971	human	ensembl	74_37	+1	known	silent	c.1053	p.L351	0.000	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP8	HGNC	ENSG00000179709	tier1	-	-	114	0	0.00	64	30	31.91
NME3	0	genome.wustl.edu	37	16	1820907	1820907	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	1820907	1820907	C	T	SNP	NME3	ENST00000219302	human	ensembl	74_37	-1	known	missense	c.367	p.G123R	0.999	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME3	HGNC	ENSG00000103024	tier1	-	-	62	0	0.00	32	15	31.91
NOD1	0	genome.wustl.edu	37	7	30491916	30491916	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	30491916	30491916	G	T	SNP	NOD1	ENST00000222823	human	ensembl	74_37	-1	known	missense	c.1117	p.R373S	0.177	pfscan_NACHT_NTPase	pfam_CARD,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	tier1	-	-	60	0	0.00	49	24	32.88
NOL4	0	genome.wustl.edu	37	18	31537451	31537451	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	31537451	31537451	A	C	SNP	NOL4	ENST00000261592	human	ensembl	74_37	-1	known	missense	c.1267	p.L423V	1.000	NULL	NULL	-	no_errors	NOL4	HGNC	ENSG00000101746	tier1	-	-	36	0	0.00	21	15	41.67
NOP14-AS1	0	genome.wustl.edu	37	4	2952780	2952780	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	2952780	2952780	A	-	DEL	NOP14-AS1	ENST00000515194	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NOP14-AS1	HGNC	ENSG00000249673	tier1			84	0	0.00	53	22	29.33
NOS1	0	genome.wustl.edu	37	12	117768738	117768738	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	117768738	117768738	A	C	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.137	p.L46R	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	tier1	-	-	47	0	0.00	36	19	34.55
NOS1AP	0	genome.wustl.edu	37	1	162336977	162336977	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	162336977	162336977	C	A	SNP	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	missense	c.1241	p.P414H	0.012	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	tier1	-	-	100	0	0.00	58	40	40.82
NOTCH2	0	genome.wustl.edu	37	1	120611955	120611955	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	120611955	120611955	G	-	DEL	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	frame_shift_del	c.66	p.A23fs	0.991	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	tier1			22	0	0.00	19	8	29.63
NPAT	0	genome.wustl.edu	37	11	108043205	108043205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	108043205	108043205	A	-	DEL	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	frame_shift_del	c.2506	p.S836fs	0.767	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	tier1			94	0	0.00	77	14	15.38
NPC1L1	0	genome.wustl.edu	37	7	44579426	44579426	+	Silent	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	44579426	44579426	G	T	SNP	NPC1L1	ENST00000289547	human	ensembl	74_37	-1	known	silent	c.570	p.G190	0.524	NULL	pfam_Patched,pfscan_SSD	-	no_errors	NPC1L1	HGNC	ENSG00000015520	tier1	-	-	60	0	0.00	43	22	33.85
NPIPB11	0	genome.wustl.edu	37	16	29395081	29395081	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	29395081	29395081	G	A	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.1172	p.T391I	0.002	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206	tier1	-	-	18	0	0.00	7	6	46.15
NR0B1	0	genome.wustl.edu	37	X	30327281	30327281	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	30327281	30327281	C	G	SNP	NR0B1	ENST00000378970	human	ensembl	74_37	-1	known	missense	c.200	p.C67S	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt	-	no_errors	NR0B1	HGNC	ENSG00000169297	tier1	-	-	26	0	0.00	26	13	33.33
NR3C2	0	genome.wustl.edu	37	4	149357089	149357089	+	Nonsense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	149357089	149357089	G	T	SNP	NR3C2	ENST00000355292	human	ensembl	74_37	-1	known	nonsense	c.924	p.C308*	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	tier1	-	-	59	0	0.00	28	18	39.13
NRK	0	genome.wustl.edu	37	X	105150564	105150564	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	105150564	105150564	A	-	DEL	NRK	ENST00000428173	human	ensembl	74_37	+1	known	frame_shift_del	c.1003	p.R337fs	0.999	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Citron,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	NRK	HGNC	ENSG00000123572	tier1			19	0	0.00	13	5	27.78
NRXN3	0	genome.wustl.edu	37	14	79111750	79111750	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	79111750	79111750	C	T	SNP	NRXN3	ENST00000554738	human	ensembl	74_37	+1	known	missense	c.1039	p.R347C	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	-	-	21	0	0.00	9	9	50.00
NSMAF	0	genome.wustl.edu	37	8	59514018	59514019	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	59514018	59514019	-	A	INS	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	frame_shift_ins	c.1295_1294	p.Y432fs	1.000:1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1			25	0	0.00	38	11	22.45
NSMAF	0	genome.wustl.edu	37	8	59514019	59514019	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	59514019	59514019	A	-	DEL	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	frame_shift_del	c.1294	p.Y432fs	1.000	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1			26	0	0.00	40	10	20.00
NTHL1	0	genome.wustl.edu	37	16	2097739	2097739	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	2097739	2097739	C	T	SNP	NTHL1	ENST00000219066	human	ensembl	74_37	-1	known	missense	c.110	p.G37E	0.023	NULL	pfam_HhH-GPD_domain,pfam_HhH_motif,superfamily_DNA_glycosylase,smart_HhH-GPD_domain,smart_Endouclease3_FeS-loop_motif	-	no_errors	NTHL1	HGNC	ENSG00000065057	tier1	-	-	15	0	0.00	8	7	46.67
OBSCN	0	genome.wustl.edu	37	1	228466533	228466533	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	228466533	228466533	T	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.7003	p.Y2335H	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	34	0	0.00	35	7	16.67
OBSCN	0	genome.wustl.edu	37	1	228559450	228559450	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	228559450	228559450	G	-	DEL	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	frame_shift_del	c.20971	p.A6993fs	0.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1			64	0	0.00	30	8	21.05
OCA2	0	genome.wustl.edu	37	15	28171274	28171274	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	28171274	28171274	T	C	SNP	OCA2	ENST00000354638	human	ensembl	74_37	-1	known	missense	c.2078	p.E693G	1.000	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	pfam_Cit_transptr-like_dom,pfam_Na/sul_symport,pfam_Arsenical_pump_ArsB,tigrfam_Arsenical_pump_ArsB	-	no_errors	OCA2	HGNC	ENSG00000104044	tier1	-	-	100	0	0.00	71	24	25.26
ODF4	0	genome.wustl.edu	37	17	8243503	8243503	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	8243503	8243503	T	C	SNP	ODF4	ENST00000328248	human	ensembl	74_37	+1	known	missense	c.134	p.L45P	0.000	NULL	NULL	-	no_errors	ODF4	HGNC	ENSG00000184650	tier1	-	-	23	0	0.00	12	8	40.00
OLFML2B	0	genome.wustl.edu	37	1	161953998	161953998	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	161953998	161953998	C	T	SNP	OLFML2B	ENST00000294794	human	ensembl	74_37	-1	known	missense	c.1720	p.A574T	0.977	pfam_Olfac-like,smart_Olfac-like,pfscan_Olfac-like	pfam_Olfac-like,superfamily_NA-bd_OB-fold,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFML2B	HGNC	ENSG00000162745	tier1	-	-	73	0	0.00	46	28	37.33
OLIG3	0	genome.wustl.edu	37	6	137815191	137815191	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	137815191	137815191	C	T	SNP	OLIG3	ENST00000367734	human	ensembl	74_37	-1	known	silent	c.117	p.S39	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	OLIG3	HGNC	ENSG00000177468	tier1	rs144904422	-	83	0	0.00	59	31	34.44
OMP	0	genome.wustl.edu	37	11	76813970	76813970	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	76813970	76813970	G	A	SNP	OMP	ENST00000529803	human	ensembl	74_37	+1	known	missense	c.85	p.V29M	0.905	pfam_Olfactory_marker,superfamily_Olfactory_marker	pfam_Olfactory_marker,superfamily_Olfactory_marker	-	no_errors	OMP	HGNC	ENSG00000254550	tier1	-	-	38	0	0.00	52	14	21.21
OR10AG1	0	genome.wustl.edu	37	11	55735839	55735839	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	55735839	55735839	C	T	SNP	OR10AG1	ENST00000312345	human	ensembl	74_37	-1	known	missense	c.101	p.G34D	0.036	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10AG1	HGNC	ENSG00000174970	tier1	-	-	70	0	0.00	56	14	20.00
OR13C9	0	genome.wustl.edu	37	9	107379989	107379989	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	107379989	107379989	A	G	SNP	OR13C9	ENST00000259362	human	ensembl	74_37	-1	known	missense	c.497	p.L166S	0.376	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C9	HGNC	ENSG00000136839	tier1	-	-	93	0	0.00	52	26	32.91
OR2G6	0	genome.wustl.edu	37	1	248685614	248685614	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	248685614	248685614	C	G	SNP	OR2G6	ENST00000343414	human	ensembl	74_37	+1	known	missense	c.667	p.Q223E	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2G6	HGNC	ENSG00000188558	tier1	-	-	117	0	0.00	102	40	28.17
OR2T5	0	genome.wustl.edu	37	1	248651905	248651905	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	248651905	248651905	A	T	SNP	OR2T5	ENST00000366473	human	ensembl	74_37	+1	known	missense	c.16	p.R6W	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T5	HGNC	ENSG00000203661	tier1	rs199833498	-	15	0	0.00	4	4	50.00
OR4D6	0	genome.wustl.edu	37	11	59225113	59225113	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	59225113	59225113	C	A	SNP	OR4D6	ENST00000300127	human	ensembl	74_37	+1	known	missense	c.680	p.S227Y	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D6	HGNC	ENSG00000166884	tier1	-	-	57	0	0.00	51	23	31.08
OR4K2	0	genome.wustl.edu	37	14	20344896	20344896	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	20344896	20344896	T	C	SNP	OR4K2	ENST00000298642	human	ensembl	74_37	+1	known	missense	c.470	p.M157T	0.580	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K2	HGNC	ENSG00000165762	tier1	-	-	444	0	0.00	380	69	15.37
OR52R1	0	genome.wustl.edu	37	11	4824866	4824866	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	4824866	4824866	A	G	SNP	OR52R1	ENST00000380382	human	ensembl	74_37	-1	known	missense	c.982	p.C328R	0.123	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52R1	HGNC	ENSG00000176937	tier1	-	-	81	0	0.00	50	29	36.71
OR6K2	0	genome.wustl.edu	37	1	158669740	158669740	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	158669740	158669740	G	A	SNP	OR6K2	ENST00000359610	human	ensembl	74_37	-1	known	missense	c.703	p.R235C	0.013	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6K2	HGNC	ENSG00000196171	tier1	rs141497361	-	61	0	0.00	30	15	33.33
P2RX3	0	genome.wustl.edu	37	11	57135570	57135570	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	57135570	57135570	C	T	SNP	P2RX3	ENST00000263314	human	ensembl	74_37	+1	known	silent	c.930	p.Y310	0.072	pfam_P2X_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	pfam_P2X_purnocptor,prints_P2X3_purnocptor,prints_P2X_purnocptor,tigrfam_P2X_purnocptor	-	no_errors	P2RX3	HGNC	ENSG00000109991	tier1	rs200102602	-	40	0	0.00	36	15	29.41
PAPPA2	0	genome.wustl.edu	37	1	176526282	176526282	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	176526282	176526282	G	A	SNP	PAPPA2	ENST00000367662	human	ensembl	74_37	+1	known	missense	c.824	p.R275H	0.998	superfamily_ConA-like_lec_gl_sf	pfam_Notch_dom,pfam_Sushi_SCR_CCP,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA2	HGNC	ENSG00000116183	tier1	-	-	53	0	0.00	27	12	30.77
PARP14	0	genome.wustl.edu	37	3	122418807	122418807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	122418807	122418807	A	-	DEL	PARP14	ENST00000474629	human	ensembl	74_37	+1	known	frame_shift_del	c.1406	p.M471fs	0.056	NULL	pfam_Macro_dom,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_WWE-dom,smart_Macro_dom,pfscan_Macro_dom,pfscan_WWE-dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP14	HGNC	ENSG00000173193	tier1			32	0	0.00	24	7	22.58
PARP3	0	genome.wustl.edu	37	3	51979625	51979625	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	51979625	51979625	C	T	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	silent	c.997	p.L333	1.000	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	tier1	-	-	84	0	0.00	47	24	33.80
PCCA	0	genome.wustl.edu	37	13	101182360	101182361	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	101182360	101182361	TG	-	DEL	PCCA	ENST00000376285	human	ensembl	74_37	+1	known	frame_shift_del	c.2127_2128	p.V710fs	0.004:0.983	pfam_Biotin_lipoyl,superfamily_Single_hybrid_motif,pfscan_Biotin_lipoyl	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	tier1			50	0	0.00	29	12	29.27
PCDH15	0	genome.wustl.edu	37	10	55755454	55755454	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	55755454	55755454	C	A	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.2823	p.K941N	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	88	0	0.00	49	19	27.94
PCDHB11	0	genome.wustl.edu	37	5	140580725	140580725	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140580725	140580725	G	A	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.1378	p.V460I	0.003	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	tier1	-	-	191	0	0.00	155	60	27.91
PCDHB13	0	genome.wustl.edu	37	5	140594334	140594335	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140594334	140594335	CA	-	DEL	PCDHB13	ENST00000341948	human	ensembl	74_37	+1	known	frame_shift_del	c.639_640	p.T214fs	0.037:0.097	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB13	HGNC	ENSG00000187372	tier1			74	0	0.00	70	28	28.57
PCDHB14	0	genome.wustl.edu	37	5	140604768	140604768	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140604768	140604768	C	T	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.1691	p.P564L	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	tier1	-	-	25	0	0.00	19	6	24.00
PCDHB15	0	genome.wustl.edu	37	5	140626837	140626837	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140626837	140626837	C	T	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	missense	c.1691	p.P564L	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248				58	0	0.00	67	7	9.46
PCDHB5	0	genome.wustl.edu	37	5	140516291	140516291	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140516291	140516291	G	-	DEL	PCDHB5	ENST00000231134	human	ensembl	74_37	+1	known	frame_shift_del	c.1275	p.T427fs	0.607	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB5	HGNC	ENSG00000113209	tier1			162	0	0.00	104	42	28.77
PCDHGA9	0	genome.wustl.edu	37	5	140784429	140784429	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	140784429	140784429	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	missense	c.1910	p.A637V	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	tier1	-	-	41	0	0.00	35	13	27.08
PCIF1	0	genome.wustl.edu	37	20	44569841	44569841	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	44569841	44569841	G	A	SNP	PCIF1	ENST00000372409	human	ensembl	74_37	+1	known	missense	c.668	p.R223Q	1.000	NULL	pfam_PCIF1_WW,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	PCIF1	HGNC	ENSG00000100982	tier1	-	-	57	0	0.00	35	14	28.57
PDE4DIP	0	genome.wustl.edu	37	1	144879327	144879327	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	144879327	144879327	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.4123	p.L1375I	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	330	0	0.00	258	52	16.67
PDIA5	0	genome.wustl.edu	37	3	122869089	122869089	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	122869089	122869089	C	-	DEL	PDIA5	ENST00000316218	human	ensembl	74_37	+1	known	frame_shift_del	c.1151	p.P386fs	1.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	PDIA5	HGNC	ENSG00000065485	tier1			73	0	0.00	46	21	31.34
PDK4	0	genome.wustl.edu	37	7	95222152	95222152	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	95222152	95222152	A	G	SNP	PDK4	ENST00000005178	human	ensembl	74_37	-1	known	missense	c.449	p.V150A	1.000	pfam_BCDHK/PDK_N,superfamily_BCDHK/PDK_N	pfam_BCDHK/PDK_N,pfam_HATPase_ATP-bd,superfamily_BCDHK/PDK_N,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pfscan_Sig_transdc_His_kinase_core	-	no_errors	PDK4	HGNC	ENSG00000004799	tier1	-	-	77	0	0.00	45	30	40.00
PDPN	0	genome.wustl.edu	37	1	13940907	13940907	+	Splice_Site	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	13940907	13940907	G	A	SNP	PDPN	ENST00000294489	human	ensembl	74_37	+1	known	splice_site	c.710+1	e5+1	1.000	-	-	-	no_errors	PDPN	HGNC	ENSG00000162493	tier1	-	-	90	0	0.00	60	24	28.57
PDS5B	0	genome.wustl.edu	37	13	33262631	33262631	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	33262631	33262631	C	A	SNP	PDS5B	ENST00000315596	human	ensembl	74_37	+1	known	missense	c.1394	p.P465H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	PDS5B	HGNC	ENSG00000083642	tier1	-	-	84	0	0.00	71	23	24.47
PEAK1	0	genome.wustl.edu	37	15	77473897	77473897	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	77473897	77473897	T	G	SNP	PEAK1	ENST00000312493	human	ensembl	74_37	-1	known	missense	c.372	p.E124D	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	PEAK1	HGNC	ENSG00000173517	tier1	-	-	183	0	0.00	135	63	31.82
PEG3	0	genome.wustl.edu	37	19	57325987	57325987	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	57325987	57325987	T	G	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.3823	p.S1275R	0.272	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	57	0	0.00	33	20	37.74
PEX10	0	genome.wustl.edu	37	1	2338295	2338295	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	2338295	2338295	G	A	SNP	PEX10	ENST00000288774	human	ensembl	74_37	-1	known	missense	c.700	p.R234C	0.067	pfam_Pex_N	pfam_Pex_N,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PEX10	HGNC	ENSG00000157911	tier1	-	-	11	0	0.00	7	4	36.36
PHEX	0	genome.wustl.edu	37	X	22231058	22231058	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	22231058	22231058	G	T	SNP	PHEX	ENST00000379374	human	ensembl	74_37	+1	known	missense	c.1683	p.W561C	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	tier1	-	-	169	0	0.00	98	34	25.76
PHF12	0	genome.wustl.edu	37	17	27239800	27239800	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	27239800	27239800	T	C	SNP	PHF12	ENST00000332830	human	ensembl	74_37	-1	known	missense	c.1789	p.T597A	1.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,superfamily_SMAD_FHA_domain,smart_Znf_PHD,pfscan_FHA_dom,pfscan_Znf_PHD-finger	-	no_errors	PHF12	HGNC	ENSG00000109118	tier1	-	-	36	0	0.00	44	13	22.81
PHF20L1	0	genome.wustl.edu	37	8	133854921	133854922	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	133854921	133854922	-	A	INS	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	frame_shift_ins	c.710_711	p.M239fs	0.000:0.000	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	tier1			58	0	0.00	87	15	14.71
PHF20L1	0	genome.wustl.edu	37	8	133856424	133856424	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	133856424	133856424	A	G	SNP	PHF20L1	ENST00000220847	human	ensembl	74_37	+1	known	silent	c.933	p.V311	0.025	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD	-	no_errors	PHF20L1	HGNC	ENSG00000129292	tier1	-	-	76	0	0.00	74	17	18.68
PHRF1	0	genome.wustl.edu	37	11	610651	610651	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	610651	610651	G	A	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.4567	p.A1523T	0.071	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	tier1	rs202209293	-	25	0	0.00	20	6	23.08
PI4K2A	0	genome.wustl.edu	37	10	99410803	99410803	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	99410803	99410803	C	T	SNP	PI4K2A	ENST00000370631	human	ensembl	74_37	+1	known	missense	c.541	p.R181C	1.000	pfam_PI3/4_kinase_cat_dom	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	tier1	-	-	64	0	0.00	40	19	32.20
PIK3AP1	0	genome.wustl.edu	37	10	98416610	98416610	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	98416610	98416610	G	A	SNP	PIK3AP1	ENST00000339364	human	ensembl	74_37	-1	known	missense	c.512	p.T171M	0.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	PIK3AP1	HGNC	ENSG00000155629	tier1	-	-	61	0	0.00	41	25	37.88
PIPSL	0	genome.wustl.edu	37	10	95721201	95721201	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	95721201	95721201	C	T	SNP	PIPSL	ENST00000480546	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.647	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	tier1	-	-	85	0	0.00	70	23	24.73
PIWIL2	0	genome.wustl.edu	37	8	22175773	22175773	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	22175773	22175773	A	-	DEL	PIWIL2	ENST00000356766	human	ensembl	74_37	+1	known	frame_shift_del	c.2388	p.K798fs	0.999	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL2	HGNC	ENSG00000197181	tier1			26	0	0.00	46	11	19.30
PJA2	0	genome.wustl.edu	37	5	108714844	108714844	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	108714844	108714844	C	T	SNP	PJA2	ENST00000361189	human	ensembl	74_37	-1	known	missense	c.344	p.S115N	0.929	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC	ENSG00000198961	tier1	-	-	86	0	0.00	51	18	26.09
PKD1	0	genome.wustl.edu	37	16	2155993	2155993	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	2155993	2155993	C	T	SNP	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	missense	c.7736	p.G2579D	0.000	pfam_PKD/REJ-like,pfscan_REJ-like,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	tier1	-	-	52	0	0.00	31	4	11.11
PKN2	0	genome.wustl.edu	37	1	89270104	89270104	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	89270104	89270104	C	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.1312	p.R438C	1.000	superfamily_C2_dom,smart_C2_dom	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	tier1	-	-	40	0	0.00	13	11	45.83
PKNOX2	0	genome.wustl.edu	37	11	125301354	125301354	+	RNA	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	125301354	125301354	G	-	DEL	PKNOX2	ENST00000530517	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.181	-	-	-	no_errors	PKNOX2	HGNC	ENSG00000165495	tier1			11	0	0.00	10	6	37.50
PLEC	0	genome.wustl.edu	37	8	145003293	145003293	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	145003293	145003293	G	A	SNP	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	silent	c.3649	p.L1217	1.000	smart_Spectrin/alpha-actinin	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	tier1	-	-	9	0	0.00	0	4	100.00
PLEKHA8	0	genome.wustl.edu	37	7	30118358	30118358	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	30118358	30118358	C	T	SNP	PLEKHA8	ENST00000449726	human	ensembl	74_37	+1	known	silent	c.1515	p.D505	1.000	superfamily_Glycolipid_transfer_prot_dom	pfam_Glycolipid_transfer_prot_dom,pfam_Pleckstrin_homology,superfamily_Glycolipid_transfer_prot_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHA8	HGNC	ENSG00000106086	tier1	-	-	62	0	0.00	33	21	38.89
PLEKHA8P1	0	genome.wustl.edu	37	12	45567067	45567067	+	RNA	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	45567067	45567067	T	C	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297	tier1	-	-	93	0	0.00	70	13	15.66
PLK1	0	genome.wustl.edu	37	16	23692279	23692279	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	23692279	23692279	A	G	SNP	PLK1	ENST00000300093	human	ensembl	74_37	+1	known	missense	c.622	p.K208E	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_POLO_box_duplicated_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK1	HGNC	ENSG00000166851	tier1	-	-	128	0	0.00	65	36	35.64
POLE	0	genome.wustl.edu	37	12	133248884	133248884	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	133248884	133248884	G	A	SNP	POLE	ENST00000320574	human	ensembl	74_37	-1	known	silent	c.1711	p.L571	1.000	smart_DNA-dir_DNA_pol_B	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	tier1	-	-	62	0	0.00	53	21	28.38
POLR1A	0	genome.wustl.edu	37	2	86281307	86281307	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	86281307	86281307	G	A	SNP	POLR1A	ENST00000263857	human	ensembl	74_37	-1	known	nonsense	c.2164	p.R722*	0.865	pfam_RNA_pol_Rpb1_3	pfam_RNA_pol_Rpb1_5,pfam_RNA_pol_asu,pfam_RNA_pol_Rpb1_3,pfam_RNA_pol_Rpb1_4,pfam_RNA_pol_Rpb1_1,smart_RNA_pol_N	-	no_errors	POLR1A	HGNC	ENSG00000068654	tier1	-	-	24	0	0.00	19	9	32.14
POP1	0	genome.wustl.edu	37	8	99168468	99168468	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	99168468	99168468	A	-	DEL	POP1	ENST00000349693	human	ensembl	74_37	+1	known	frame_shift_del	c.2248	p.T752fs	0.001	NULL	pfam_RNase_P/MRP_POP1,pfam_POPLD	-	no_errors	POP1	HGNC	ENSG00000104356	tier1			76	0	0.00	76	16	17.39
PPP1R1B	0	genome.wustl.edu	37	17	37786261	37786261	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	37786261	37786261	A	G	SNP	PPP1R1B	ENST00000254079	human	ensembl	74_37	+1	known	missense	c.202	p.R68G	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1B	HGNC	ENSG00000131771	tier1	-	-	62	0	0.00	33	12	26.67
PPP3CA	0	genome.wustl.edu	37	4	101947177	101947177	+	Nonsense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	101947177	101947177	C	A	SNP	PPP3CA	ENST00000394854	human	ensembl	74_37	-1	known	nonsense	c.1411	p.E471*	1.000	NULL	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP3CA	HGNC	ENSG00000138814	tier1	-	-	100	0	0.00	66	24	26.67
PPRC1	0	genome.wustl.edu	37	10	103907125	103907125	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	103907125	103907125	C	-	DEL	PPRC1	ENST00000278070	human	ensembl	74_37	+1	known	frame_shift_del	c.4376	p.P1461fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPRC1	HGNC	ENSG00000148840	tier1			63	0	0.00	44	20	31.25
PRDM2	0	genome.wustl.edu	37	1	14108748	14108749	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	14108748	14108749	-	A	INS	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	frame_shift_ins	c.4458_4459	p.V1489fs	0.998:1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	tier1			328	0	0.00	221	61	21.63
PREX2	0	genome.wustl.edu	37	8	69017371	69017371	+	Splice_Site	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	69017371	69017371	A	C	SNP	PREX2	ENST00000529398	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.001	-	-	-	no_errors	PREX2	HGNC	ENSG00000046889	tier1	-	-	66	0	0.00	53	24	31.17
PRKACB	0	genome.wustl.edu	37	1	84647913	84647913	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	84647913	84647913	A	-	DEL	PRKACB	ENST00000370685	human	ensembl	74_37	+1	known	frame_shift_del	c.280	p.T96fs	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACB	HGNC	ENSG00000142875	tier1			75	0	0.00	57	27	32.14
PRKCA	0	genome.wustl.edu	37	17	64800155	64800155	+	Nonstop_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	64800155	64800155	A	G	SNP	PRKCA	ENST00000413366	human	ensembl	74_37	+1	known	nonstop	c.2019	p.*673W	0.997	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	tier1	-	-	116	0	0.00	62	31	33.33
PRR14L	0	genome.wustl.edu	37	22	32108311	32108311	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	32108311	32108311	T	-	DEL	PRR14L	ENST00000397493	human	ensembl	74_37	-1	known	frame_shift_del	c.5514	p.K1838fs	1.000	NULL	NULL	-	no_errors	PRR14L	HGNC	ENSG00000183530	tier1			43	0	0.00	37	8	17.78
PRR3	0	genome.wustl.edu	37	6	30530415	30530415	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	30530415	30530415	G	A	SNP	PRR3	ENST00000481741	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PRR3	HGNC	ENSG00000204576	tier1	-	-	11	0	0.00	3	7	70.00
PRX	0	genome.wustl.edu	37	19	40900550	40900550	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	40900550	40900550	C	T	SNP	PRX	ENST00000324001	human	ensembl	74_37	-1	known	missense	c.3709	p.A1237T	0.152	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1	-	-	62	0	0.00	24	13	35.14
PSEN2	0	genome.wustl.edu	37	1	227068362	227068362	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	227068362	227068362	G	A	SNP	PSEN2	ENST00000391872	human	ensembl	74_37	+1	known	missense	c.16	p.V6I	0.001	NULL	pfam_Peptidase_A22A,smart_Preselin/SPP,prints_Pept_A22A_PS2,prints_Peptidase_A22A	-	no_errors	PSEN2	HGNC	ENSG00000143801	tier1	-	-	195	0	0.00	132	57	30.16
PTP4A1	0	genome.wustl.edu	37	6	64290013	64290015	+	In_Frame_Del	DEL	TCG	TCG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	TCG	TCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	64290013	64290015	TCG	-	DEL	PTP4A1	ENST00000370651	human	ensembl	74_37	+1	known	in_frame_del	c.456_458	p.R153in_frame_del	1.000:1.000:1.000	smart_Tyr_Pase_cat	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	PTP4A1	HGNC	ENSG00000112245	tier1			143	0	0.00	79	30	27.52
PTPN21	0	genome.wustl.edu	37	14	88946485	88946485	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	88946485	88946485	G	A	SNP	PTPN21	ENST00000328736	human	ensembl	74_37	-1	known	silent	c.1290	p.D430	1.000	pirsf_Tyr_Pase_non-rcpt_typ-14/21	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN21	HGNC	ENSG00000070778	tier1	-	-	30	0	0.00	24	13	35.14
PTPRG	0	genome.wustl.edu	37	3	62118332	62118332	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	62118332	62118332	C	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	silent	c.672	p.V224	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	tier1	-	-	183	0	0.00	124	50	28.74
PTTG1IP	0	genome.wustl.edu	37	21	46281076	46281076	+	Splice_Site	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	46281076	46281076	A	G	SNP	PTTG1IP	ENST00000330938	human	ensembl	74_37	-1	known	splice_site	c.277+2	e3+2	1.000	-	-	-	no_errors	PTTG1IP	HGNC	ENSG00000183255	tier1	-	-	97	0	0.00	36	11	23.40
R3HDM1	0	genome.wustl.edu	37	2	136437772	136437773	+	Frame_Shift_Ins	INS	-	-	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	136437772	136437773	0	C	INS	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	frame_shift_ins	c.2232_2233	p.H745fs	1.000:1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991				171	0	0.00	162	11	6.36
RABL6	0	genome.wustl.edu	37	9	139733533	139733533	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	139733533	139733533	G	T	SNP	RABL6	ENST00000371663	human	ensembl	74_37	+1	known	missense	c.1456	p.A486S	0.000	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,prints_Small_GTPase	-	no_errors	RABL6	HGNC	ENSG00000196642	tier1	-	-	32	0	0.00	25	8	24.24
RAD51D	0	genome.wustl.edu	37	17	33446676	33446676	+	RNA	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	33446676	33446676	G	-	DEL	RAD51D	ENST00000590380	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.183	-	-	-	no_errors	RAD51D	HGNC	ENSG00000185379	tier1			33	0	0.00	19	10	34.48
RAI1	0	genome.wustl.edu	37	17	17697093	17697094	+	In_Frame_Ins	INS	-	-	CAG			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	17697093	17697094	-	CAG	INS	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	in_frame_ins	c.831_832	p.281in_frame_insQ	0.100:0.831	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	tier1			62	0	0.00	47	10	17.54
RASGRP3	0	genome.wustl.edu	37	2	33783772	33783772	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	33783772	33783772	C	T	SNP	RASGRP3	ENST00000402538	human	ensembl	74_37	+1	known	missense	c.1739	p.T580I	0.586	NULL	pfam_RasGRF_CDC25,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_hand_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N,prints_DAG/PE-bd	-	no_errors	RASGRP3	HGNC	ENSG00000152689	tier1	-	-	67	0	0.00	46	18	27.69
RAVER1	0	genome.wustl.edu	37	19	10433828	10433828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	10433828	10433828	C	-	DEL	RAVER1	ENST00000293677	human	ensembl	74_37	-1	known	frame_shift_del	c.1122	p.K375fs	0.999	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RAVER1	HGNC	ENSG00000161847	tier1			16	0	0.00	15	4	21.05
RBBP8	0	genome.wustl.edu	37	18	20572853	20572853	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	20572853	20572853	A	-	DEL	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	frame_shift_del	c.1063	p.K357fs	0.002	NULL	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	tier1			89	0	0.00	54	25	31.65
RBM12	0	genome.wustl.edu	37	20	34241895	34241895	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	34241895	34241895	A	-	DEL	RBM12	ENST00000359646	human	ensembl	74_37	-1	known	frame_shift_del	c.1350	p.F450fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM12	HGNC	ENSG00000244462	tier1			115	0	0.00	94	28	22.95
RBM41	0	genome.wustl.edu	37	X	106358657	106358657	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	106358657	106358657	G	A	SNP	RBM41	ENST00000372479	human	ensembl	74_37	-1	known	nonsense	c.448	p.R150*	0.993	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBM41	HGNC	ENSG00000089682	tier1	-	-	160	0	0.00	87	41	31.78
RBMS2	0	genome.wustl.edu	37	12	56965606	56965606	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	56965606	56965606	C	T	SNP	RBMS2	ENST00000262031	human	ensembl	74_37	+1	known	missense	c.509	p.T170I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMS2	HGNC	ENSG00000076067	tier1	-	-	23	0	0.00	20	10	33.33
RBP3	0	genome.wustl.edu	37	10	48389580	48389580	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	48389580	48389580	G	A	SNP	RBP3	ENST00000224600	human	ensembl	74_37	-1	known	missense	c.1298	p.S433L	0.943	smart_Interphotoreceptor_retinol-bd	pfam_Interphotoreceptor_retinol-bd,pfam_Interphotorcpt_retinol-bd_N,smart_Interphotoreceptor_retinol-bd	-	no_errors	RBP3	HGNC	ENSG00000107618	tier1	-	-	26	0	0.00	26	25	49.02
RDH5	0	genome.wustl.edu	37	12	56118161	56118161	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	56118161	56118161	G	T	SNP	RDH5	ENST00000257895	human	ensembl	74_37	+1	known	missense	c.789	p.K263N	1.000	NULL	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR,prints_DHB_DH	-	no_errors	RDH5	HGNC	ENSG00000135437	tier1	-	-	76	0	0.00	48	34	41.46
REEP1	0	genome.wustl.edu	37	2	86459825	86459825	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	86459825	86459825	G	A	SNP	REEP1	ENST00000538924	human	ensembl	74_37	-1	known	missense	c.539	p.P180L	0.124	NULL	pfam_TB2_DP1_HVA22	-	no_errors	REEP1	HGNC	ENSG00000068615	tier1	-	-	33	0	0.00	23	16	41.03
REPS2	0	genome.wustl.edu	37	X	17165605	17165605	+	RNA	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	17165605	17165605	C	-	DEL	REPS2	ENST00000469714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	REPS2	HGNC	ENSG00000169891	tier1			243	0	0.00	185	56	23.24
RGS20	0	genome.wustl.edu	37	8	54791859	54791859	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	54791859	54791859	G	A	SNP	RGS20	ENST00000297313	human	ensembl	74_37	+1	known	silent	c.207	p.P69	0.747	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS20	HGNC	ENSG00000147509	tier1	-	-	202	0	0.00	215	16	6.93
RGS21	0	genome.wustl.edu	37	1	192335062	192335062	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	192335062	192335062	C	T	SNP	RGS21	ENST00000417209	human	ensembl	74_37	+1	known	silent	c.267	p.D89	1.000	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS21	HGNC	ENSG00000253148	tier1	-	-	116	0	0.00	79	41	34.17
RGS6	0	genome.wustl.edu	37	14	72925031	72925031	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	72925031	72925031	A	G	SNP	RGS6	ENST00000553525	human	ensembl	74_37	+1	known	silent	c.288	p.P96	0.200	pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom	pfam_RGS_dom,pfam_G-protein_gamma-like_dom,pfam_DEP_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_G-protein_gamma-like_dom,smart_DEP_dom,smart_G-protein_gamma-like_dom,smart_Regulat_G_prot_signal_superfam,pfscan_DEP_dom,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS6	HGNC	ENSG00000182732	tier1	-	-	94	0	0.00	42	20	32.26
RIC3	0	genome.wustl.edu	37	11	8148283	8148283	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	8148283	8148283	A	G	SNP	RIC3	ENST00000309737	human	ensembl	74_37	-1	known	missense	c.593	p.M198T	1.000	NULL	NULL	-	no_errors	RIC3	HGNC	ENSG00000166405	tier1	-	-	76	0	0.00	55	23	29.11
RIC8B	0	genome.wustl.edu	37	12	107237697	107237697	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	107237697	107237697	G	A	SNP	RIC8B	ENST00000392837	human	ensembl	74_37	+1	known	missense	c.1133	p.R378Q	1.000	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785	tier1	-	-	88	0	0.00	41	27	39.71
RICTOR	0	genome.wustl.edu	37	5	38954826	38954826	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	38954826	38954826	T	-	DEL	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327	tier1			67	0	0.00	38	13	25.49
RMDN2	0	genome.wustl.edu	37	2	38178783	38178783	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	38178783	38178783	T	-	DEL	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	frame_shift_del	c.425	p.F144fs	0.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841	tier1			68	0	0.00	53	27	33.75
RMDN3	0	genome.wustl.edu	37	15	41029894	41029894	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	41029894	41029894	T	-	DEL	RMDN3	ENST00000260385	human	ensembl	74_37	-1	known	frame_shift_del	c.1156	p.T386fs	1.000	NULL	NULL	-	no_errors	RMDN3	HGNC	ENSG00000137824	tier1			54	0	0.00	50	8	13.79
RNASE12	0	genome.wustl.edu	37	14	21058704	21058704	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	21058704	21058704	T	C	SNP	RNASE12	ENST00000556526	human	ensembl	74_37	-1	known	missense	c.179	p.H60R	0.914	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE12	HGNC	ENSG00000258436	tier1	-	-	74	0	0.00	59	19	24.36
RNF150	0	genome.wustl.edu	37	4	142053546	142053546	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	142053546	142053546	G	A	SNP	RNF150	ENST00000515673	human	ensembl	74_37	-1	known	silent	c.417	p.N139	1.000	pfam_Protease-assoc_domain	pfam_Protease-assoc_domain,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF150	HGNC	ENSG00000170153	tier1	-	-	9	0	0.00	9	4	30.77
RNF168	0	genome.wustl.edu	37	3	196199010	196199010	+	Silent	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	196199010	196199010	G	T	SNP	RNF168	ENST00000318037	human	ensembl	74_37	-1	known	silent	c.1396	p.R466	0.996	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF168	HGNC	ENSG00000163961	tier1	-	-	205	0	0.00	130	67	33.84
RNF213	0	genome.wustl.edu	37	17	78321995	78321995	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	78321995	78321995	A	G	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.9860	p.Y3287C	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	63	0	0.00	48	22	31.43
RNF216	0	genome.wustl.edu	37	7	5781309	5781309	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	5781309	5781309	C	T	SNP	RNF216	ENST00000389902	human	ensembl	74_37	-1	known	silent	c.339	p.V113	0.890	NULL	smart_Znf_C6HC	-	no_errors	RNF216	HGNC	ENSG00000011275	tier1	-	-	183	0	0.00	130	47	26.55
RNF43	0	genome.wustl.edu	37	17	56435161	56435161	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	56435161	56435161	C	-	DEL	RNF43	ENST00000407977	human	ensembl	74_37	-1	known	frame_shift_del	c.1976	p.G659fs	0.900	NULL	pfam_Znf_C3HC4_RING-type,superfamily_PAS,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF43	HGNC	ENSG00000108375	tier1			97	0	0.00	85	12	12.37
ROBO2	0	genome.wustl.edu	37	3	77684125	77684125	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	77684125	77684125	A	-	DEL	ROBO2	ENST00000461745	human	ensembl	74_37	+1	known	frame_shift_del	c.3865	p.K1290fs	0.976	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO2	HGNC	ENSG00000185008	tier1			54	0	0.00	33	14	29.79
ROR2	0	genome.wustl.edu	37	9	94487099	94487099	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	94487099	94487099	G	A	SNP	ROR2	ENST00000375708	human	ensembl	74_37	-1	known	silent	c.1677	p.G559	0.049	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	ROR2	HGNC	ENSG00000169071	tier1	-	-	47	0	0.00	42	6	12.50
ROS1	0	genome.wustl.edu	37	6	117687392	117687392	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	117687392	117687392	C	A	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.2659	p.A887S	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	tier1	-	-	74	0	0.00	20	27	57.45
RP1	0	genome.wustl.edu	37	8	55538813	55538813	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	55538813	55538813	A	-	DEL	RP1	ENST00000220676	human	ensembl	74_37	+1	known	frame_shift_del	c.2371	p.R793fs	0.177	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	tier1			81	0	0.00	76	18	19.15
RPS6KA2	0	genome.wustl.edu	37	6	166902326	166902326	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	166902326	166902326	C	T	SNP	RPS6KA2	ENST00000510118	human	ensembl	74_37	-1	known	missense	c.977	p.R326Q	0.998	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	tier1	-	-	41	0	0.00	20	8	28.57
RRBP1	0	genome.wustl.edu	37	20	17640852	17640852	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	17640852	17640852	G	A	SNP	RRBP1	ENST00000246043	human	ensembl	74_37	-1	known	missense	c.301	p.R101W	0.000	pfam_Rib_rcpt_KP	pfam_Rib_rcpt_KP,superfamily_Ribosome_recyc_fac_dom	-	no_errors	RRBP1	HGNC	ENSG00000125844	tier1	-	-	27	0	0.00	12	8	40.00
RRN3P1	0	genome.wustl.edu	37	16	21817539	21817539	+	RNA	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	21817539	21817539	A	G	SNP	RRN3P1	ENST00000546471	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RRN3P1	HGNC	ENSG00000248124	tier1	-	-	57	0	0.00	44	20	31.25
RSU1	0	genome.wustl.edu	37	10	16737155	16737156	+	Splice_Site	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	16737155	16737156	-	T	INS	RSU1	ENST00000345264	human	ensembl	74_37	-1	known	splice_site_ins	c.599-2_599-1	e7-1	1.000:1.000	-	-	-	no_errors	RSU1	HGNC	ENSG00000148484	tier1			33	0	0.00	25	5	16.67
RTCA	0	genome.wustl.edu	37	1	100750859	100750859	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	100750859	100750859	A	G	SNP	RTCA	ENST00000260563	human	ensembl	74_37	+1	known	missense	c.914	p.D305G	1.000	pfam_RNA3'_phos_cyclase_dom,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,tigrfam_RNA3'_term_phos_cyc_type_1	pfam_RNA3'_phos_cyclase_dom,pfam_RNA3'-term_phos_cycl_insert,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,superfamily_RNA3'-term_phos_cycl_insert,tigrfam_RNA3'_term_phos_cyc_type_1	-	no_errors	RTCA	HGNC	ENSG00000137996	tier1	-	-	79	0	0.00	49	15	23.44
RTEL1	0	genome.wustl.edu	37	20	62292799	62292799	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	62292799	62292799	G	A	SNP	RTEL1	ENST00000318100	human	ensembl	74_37	+1	known	missense	c.251	p.R84Q	0.000	superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3	pfam_DEAD_2,superfamily_P-loop_NTPase,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	RTEL1	HGNC	ENSG00000258366	tier1	-	-	43	0	0.00	20	5	20.00
RTL1	0	genome.wustl.edu	37	14	101350917	101350917	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	101350917	101350917	G	T	SNP	RTL1	ENST00000534062	human	ensembl	74_37	-1	known	missense	c.209	p.P70H	1.000	NULL	pfam_Retrotrans_gag_dom,superfamily_Peptidase_aspartic_dom	-	no_errors	RTL1	HGNC	ENSG00000254656	tier1	-	-	79	0	0.00	52	16	23.53
RUNX2	0	genome.wustl.edu	37	6	45390604	45390604	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	45390604	45390604	C	T	SNP	RUNX2	ENST00000352853	human	ensembl	74_37	+1	known	silent	c.537	p.A179	1.000	pfam_Runt_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX2	HGNC	ENSG00000124813	tier1	-	-	35	0	0.00	25	20	44.44
RXRA	0	genome.wustl.edu	37	9	137323779	137323779	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	137323779	137323779	C	T	SNP	RXRA	ENST00000481739	human	ensembl	74_37	+1	known	missense	c.1072	p.R358W	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Retinoid-X_rcpt/HNF4	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Nuc_recep-AF1,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1	-	-	48	0	0.00	27	7	20.59
RYK	0	genome.wustl.edu	37	3	133901877	133901878	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	133901877	133901878	CA	-	DEL	RYK	ENST00000427044	human	ensembl	74_37	-1	known	frame_shift_del	c.574_573	p.E192fs	1.000:0.089	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	RYK	HGNC	ENSG00000163785	tier1			18	0	0.00	2	2	50.00
SAGE1	0	genome.wustl.edu	37	X	134986646	134986646	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	134986646	134986646	C	T	SNP	SAGE1	ENST00000324447	human	ensembl	74_37	+1	known	silent	c.231	p.V77	0.001	NULL	NULL	-	no_errors	SAGE1	HGNC	ENSG00000181433	tier1	-	-	204	0	0.00	105	60	36.36
SAMD1	0	genome.wustl.edu	37	19	14199996	14199996	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	14199996	14199996	T	C	SNP	SAMD1	ENST00000533683	human	ensembl	74_37	-1	novel	missense	c.815	p.K272R	0.981	NULL	pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD1	HGNC	ENSG00000141858	tier1	-	-	11	0	0.00	11	5	31.25
SAMD4A	0	genome.wustl.edu	37	14	55255768	55255768	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	55255768	55255768	T	-	DEL	SAMD4A	ENST00000553988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.920	-	-	-	no_errors	SAMD4A	HGNC	ENSG00000020577	tier1			22	0	0.00	14	7	33.33
SARS	0	genome.wustl.edu	37	1	109774213	109774213	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	109774213	109774213	C	T	SNP	SARS	ENST00000471705	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SARS	HGNC	ENSG00000031698	tier1	-	-	68	0	0.00	27	15	35.71
SART3	0	genome.wustl.edu	37	12	108920104	108920104	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	108920104	108920104	G	A	SNP	SART3	ENST00000228284	human	ensembl	74_37	-1	known	silent	c.2142	p.S714	0.975	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_LSM_interact,smart_HAT,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SART3	HGNC	ENSG00000075856	tier1	-	-	64	0	0.00	45	22	32.84
SBNO2	0	genome.wustl.edu	37	19	1108860	1108860	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	1108860	1108860	G	A	SNP	SBNO2	ENST00000361757	human	ensembl	74_37	-1	known	silent	c.3534	p.I1178	0.964	NULL	superfamily_P-loop_NTPase	-	no_errors	SBNO2	HGNC	ENSG00000064932				15	0	0.00	10	7	41.18
SDK2	0	genome.wustl.edu	37	17	71389698	71389698	+	Splice_Site	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	71389698	71389698	C	A	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	splice_site	c.3898+1	e27+1	1.000	-	-	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	31	0	0.00	11	9	45.00
SEC16A	0	genome.wustl.edu	37	9	139368994	139368994	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	139368994	139368994	C	T	SNP	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	missense	c.3074	p.S1025N	0.000	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	tier1	-	-	20	0	0.00	22	7	24.14
SEC1P	0	genome.wustl.edu	37	19	49184031	49184031	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	49184031	49184031	C	T	SNP	SEC1P	ENST00000430145	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.191	-	-	-	no_errors	SEC1P	HGNC	ENSG00000232871	tier1	-	-	8	0	0.00	10	9	47.37
SEPT3	0	genome.wustl.edu	37	22	42377814	42377814	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	42377814	42377814	G	A	SNP	SEPT3	ENST00000396426	human	ensembl	74_37	+1	known	missense	c.176	p.G59D	1.000	pfam_Cell_div_GTP-bd,superfamily_P-loop_NTPase,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pfam_AIG1,superfamily_P-loop_NTPase,pirsf_Septin,prints_Septin3	-	no_errors	SEPT3	HGNC	ENSG00000100167	tier1	-	-	45	0	0.00	32	6	15.79
SEZ6L	0	genome.wustl.edu	37	22	26688839	26688839	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	26688839	26688839	C	T	SNP	SEZ6L	ENST00000248933	human	ensembl	74_37	+1	known	nonsense	c.562	p.R188*	0.000	NULL	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	SEZ6L	HGNC	ENSG00000100095	tier1	-	-	95	0	0.00	94	35	27.13
SF3B4	0	genome.wustl.edu	37	1	149897739	149897739	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	149897739	149897739	A	G	SNP	SF3B4	ENST00000271628	human	ensembl	74_37	-1	known	missense	c.902	p.M301T	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SF3B4	HGNC	ENSG00000143368	tier1	-	-	40	0	0.00	20	10	33.33
SFI1	0	genome.wustl.edu	37	22	32010836	32010836	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	32010836	32010836	C	T	SNP	SFI1	ENST00000400288	human	ensembl	74_37	+1	known	nonsense	c.3058	p.Q1020*	0.190	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	tier1	-	-	19	0	0.00	8	4	33.33
SFTPB	0	genome.wustl.edu	37	2	85890590	85890590	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	85890590	85890590	G	A	SNP	SFTPB	ENST00000393822	human	ensembl	74_37	-1	known	missense	c.917	p.P306L	0.002	NULL	pfam_SapB_2,pfam_SapA,pfam_SapB_1,superfamily_Saposin-like,smart_SapA,smart_SaposinB,pfscan_SapA,pfscan_SaposinB,prints_Saposin	-	no_errors	SFTPB	HGNC	ENSG00000168878	tier1	-	-	23	0	0.00	25	11	30.56
SGSM1	0	genome.wustl.edu	37	22	25315860	25315860	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	25315860	25315860	G	A	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	silent	c.3258	p.A1086	0.502	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	tier1	-	-	31	0	0.00	18	13	41.94
SH3BP1	0	genome.wustl.edu	37	22	38041398	38041398	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	38041398	38041398	C	T	SNP	SH3BP1	ENST00000357436	human	ensembl	74_37	+1	known	missense	c.805	p.H269Y	1.000	NULL	pfam_RhoGAP_dom,pfam_BAR_dom,superfamily_Rho_GTPase_activation_prot,smart_BAR_dom,smart_RhoGAP_dom,pfscan_BAR_dom,pfscan_RhoGAP_dom	-	no_errors	SH3BP1	HGNC	ENSG00000100092	tier1	-	-	82	0	0.00	51	20	28.17
SH3TC2	0	genome.wustl.edu	37	5	148407354	148407354	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	148407354	148407354	G	A	SNP	SH3TC2	ENST00000515425	human	ensembl	74_37	-1	known	silent	c.1941	p.G647	0.980	NULL	pfam_SH3_domain,pfam_TPR_1,superfamily_SH3_domain,smart_SH3_domain,smart_TPR_repeat,pfscan_SH3_domain	-	no_errors	SH3TC2	HGNC	ENSG00000169247	tier1	-	-	26	0	0.00	29	13	30.95
SHB	0	genome.wustl.edu	37	9	37919927	37919927	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	37919927	37919927	G	A	SNP	SHB	ENST00000377707	human	ensembl	74_37	-1	known	missense	c.1421	p.P474L	0.984	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHB	HGNC	ENSG00000107338	tier1	-	-	72	0	0.00	42	24	36.36
SHB	0	genome.wustl.edu	37	9	38016119	38016119	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	38016119	38016119	C	A	SNP	SHB	ENST00000377707	human	ensembl	74_37	-1	known	missense	c.727	p.A243S	0.998	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SHB	HGNC	ENSG00000107338	tier1	-	-	45	0	0.00	24	10	29.41
SHMT1	0	genome.wustl.edu	37	17	18232626	18232626	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	18232626	18232626	T	C	SNP	SHMT1	ENST00000316694	human	ensembl	74_37	-1	known	silent	c.1248	p.K416	1.000	pfam_Ser_HO-MeTrfase,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	pfam_Ser_HO-MeTrfase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase,pirsf_Ser_HO-MeTrfase	-	no_errors	SHMT1	HGNC	ENSG00000176974	tier1	-	-	34	0	0.00	19	7	26.92
SHPRH	0	genome.wustl.edu	37	6	146244837	146244837	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	146244837	146244837	G	A	SNP	SHPRH	ENST00000367503	human	ensembl	74_37	-1	known	nonsense	c.3514	p.R1172*	1.000	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Histone_H1/H5_H15,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,superfamily_WW_dom,smart_Helicase_ATP-bd,smart_Histone_H1/H5_H15,smart_Znf_PHD,smart_Znf_RING,smart_Helicase_C,pfscan_Znf_RING,pfscan_Helicase_C	-	no_errors	SHPRH	HGNC	ENSG00000146414	tier1	-	-	127	0	0.00	110	15	12.00
SHROOM2	0	genome.wustl.edu	37	X	9859144	9859144	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	9859144	9859144	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.445	p.A149T	0.006	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	tier1	-	-	22	0	0.00	10	5	33.33
SIDT1	0	genome.wustl.edu	37	3	113295781	113295781	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	113295781	113295781	C	T	SNP	SIDT1	ENST00000393830	human	ensembl	74_37	+1	known	silent	c.528	p.A176	1.000	NULL	NULL	-	no_errors	SIDT1	HGNC	ENSG00000072858	tier1	-	-	220	0	0.00	156	58	27.10
SKOR1	0	genome.wustl.edu	37	15	68118278	68118278	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	68118278	68118278	G	A	SNP	SKOR1	ENST00000380035	human	ensembl	74_37	+1	known	missense	c.112	p.G38S	1.000	NULL	pfam_Transform_Ski,pfam_c-SKI_SMAD4-bd_dom,superfamily_DNA-bd_dom_put,superfamily_SAND_dom-like	-	no_errors	SKOR1	HGNC	ENSG00000188779	tier1	-	-	85	0	0.00	54	26	32.50
SLC22A24	0	genome.wustl.edu	37	11	62910936	62910936	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	62910936	62910936	G	A	SNP	SLC22A24	ENST00000326192	human	ensembl	74_37	-1	known	missense	c.316	p.P106S	0.001	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A24	HGNC	ENSG00000197658	tier1	-	-	24	0	0.00	44	12	21.43
SLC22A6	0	genome.wustl.edu	37	11	62751910	62751910	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	62751910	62751910	G	A	SNP	SLC22A6	ENST00000377871	human	ensembl	74_37	-1	known	nonsense	c.253	p.Q85*	0.002	tigrfam_Orgcat_transp	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Orgcat_transp	-	no_errors	SLC22A6	HGNC	ENSG00000197901	tier1	-	-	88	0	0.00	106	21	16.54
SLC25A12	0	genome.wustl.edu	37	2	172666096	172666096	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	172666096	172666096	C	T	SNP	SLC25A12	ENST00000494892	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC25A12	HGNC	ENSG00000115840	tier1	-	-	101	0	0.00	84	51	37.78
SLC25A24	0	genome.wustl.edu	37	1	108700183	108700183	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	108700183	108700183	T	-	DEL	SLC25A24	ENST00000565488	human	ensembl	74_37	-1	known	frame_shift_del	c.570	p.K190fs	0.000	superfamily_Mt_carrier_dom,prints_Graves_DC	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Graves_DC	-	no_errors	SLC25A24	HGNC	ENSG00000085491	tier1			90	0	0.00	72	34	32.08
SLC25A41	0	genome.wustl.edu	37	19	6429780	6429780	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	6429780	6429780	G	A	SNP	SLC25A41	ENST00000458275	human	ensembl	74_37	-1	known	missense	c.677	p.A226V	0.437	NULL	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier	-	no_errors	SLC25A41	HGNC	ENSG00000181240	tier1	-	-	31	0	0.00	25	9	26.47
SLC35A3	0	genome.wustl.edu	37	1	100477012	100477012	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	100477012	100477012	G	T	SNP	SLC35A3	ENST00000370153	human	ensembl	74_37	+1	known	missense	c.683	p.S228I	1.000	pfam_Nuc_sug_transpt,pfam_UAA,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	pfam_Nuc_sug_transpt,pfam_UAA,pfam_DMT,pfam_Tpt_PEP_trans_dom,pirsf_UDP/CMP-sugar_transptr,tigrfam_UDPgal_transpt	-	no_errors	SLC35A3	HGNC	ENSG00000117620	tier1	-	-	108	0	0.00	64	10	13.51
SLC36A1	0	genome.wustl.edu	37	5	150858882	150858882	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	150858882	150858882	T	C	SNP	SLC36A1	ENST00000243389	human	ensembl	74_37	+1	known	silent	c.991	p.L331	0.914	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC36A1	HGNC	ENSG00000123643	tier1	-	-	120	0	0.00	74	55	42.31
SLC45A3	0	genome.wustl.edu	37	1	205632684	205632684	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	205632684	205632684	G	A	SNP	SLC45A3	ENST00000367145	human	ensembl	74_37	-1	known	missense	c.235	p.R79C	0.866	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A3	HGNC	ENSG00000158715	tier1	-	-	61	0	0.00	31	14	31.11
SLC4A11	0	genome.wustl.edu	37	20	3209826	3209827	+	Frame_Shift_Ins	INS	-	-	ACCG			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	3209826	3209827	-	ACCG	INS	SLC4A11	ENST00000380059	human	ensembl	74_37	-1	known	frame_shift_ins	c.2062_2061	p.A687fs	0.997:0.842	pfam_HCO3_transpt_C	pfam_HCO3_transpt_C,pfam_PTS_EIIA_type-2_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk	-	no_errors	SLC4A11	HGNC	ENSG00000088836	tier1			74	0	0.00	33	14	29.79
SLC5A4	0	genome.wustl.edu	37	22	32650150	32650150	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	32650150	32650150	A	G	SNP	SLC5A4	ENST00000266086	human	ensembl	74_37	-1	known	silent	c.186	p.G62	0.957	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	pfam_Na/solute_symporter,pfscan_Na/solute_symporter,tigrfam_Na/solute_symporter_subgr	-	no_errors	SLC5A4	HGNC	ENSG00000100191	tier1	-	-	54	0	0.00	32	21	39.62
SLC6A15	0	genome.wustl.edu	37	12	85279728	85279728	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	85279728	85279728	T	C	SNP	SLC6A15	ENST00000266682	human	ensembl	74_37	-1	known	missense	c.409	p.S137G	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A15	HGNC	ENSG00000072041	tier1	-	-	117	0	0.00	81	38	31.93
SLC7A14	0	genome.wustl.edu	37	3	170219001	170219001	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	170219001	170219001	G	A	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	silent	c.438	p.G146	1.000	pfam_AA-permease/SLC12A_dom	pfam_AA-permease/SLC12A_dom	-	no_errors	SLC7A14	HGNC	ENSG00000013293	tier1	-	-	36	0	0.00	26	11	28.95
SLC7A2	0	genome.wustl.edu	37	8	17402081	17402081	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	17402081	17402081	T	-	DEL	SLC7A2	ENST00000004531	human	ensembl	74_37	+1	known	frame_shift_del	c.618	p.F208fs	0.996	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	pfam_AA-permease/SLC12A_dom,tigrfam_Cat_AA_permease	-	no_errors	SLC7A2	HGNC	ENSG00000003989	tier1			69	0	0.00	56	12	17.65
SLC9A7	0	genome.wustl.edu	37	X	46466414	46466414	+	Silent	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	46466414	46466414	T	G	SNP	SLC9A7	ENST00000328306	human	ensembl	74_37	-1	known	silent	c.2151	p.L717	0.525	NULL	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A7	HGNC	ENSG00000065923	tier1	-	-	86	0	0.00	59	14	19.18
SLCO1B7	0	genome.wustl.edu	37	12	21196321	21196321	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	21196321	21196321	G	T	SNP	SLCO1B7	ENST00000554957	human	ensembl	74_37	+1	known	missense	c.781	p.G261C	1.000	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B7	HGNC	ENSG00000205754	tier1	-	-	164	0	0.00	115	50	30.30
SLCO6A1	0	genome.wustl.edu	37	5	101834337	101834337	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	101834337	101834337	T	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.212	p.K71R	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	tier1	-	-	227	0	0.00	146	68	31.78
SLITRK1	0	genome.wustl.edu	37	13	84454943	84454943	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	84454943	84454943	C	T	SNP	SLITRK1	ENST00000377084	human	ensembl	74_37	-1	known	missense	c.700	p.A234T	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK1	HGNC	ENSG00000178235	tier1	-	-	46	0	0.00	40	18	31.03
SMARCA1	0	genome.wustl.edu	37	X	128626046	128626046	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	128626046	128626046	G	A	SNP	SMARCA1	ENST00000371122	human	ensembl	74_37	-1	known	missense	c.1687	p.P563S	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_SLIDE,pfam_ISWI_HAND-dom,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,superfamily_ISWI_HAND-dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_SANT/Myb,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SMARCA1	HGNC	ENSG00000102038	tier1	-	-	221	0	0.00	119	47	28.31
SMARCA2	0	genome.wustl.edu	37	9	2033024	2033024	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	2033024	2033024	C	T	SNP	SMARCA2	ENST00000349721	human	ensembl	74_37	+1	known	nonsense	c.298	p.R100*	1.000	NULL	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_P-loop_NTPase,superfamily_Bromodomain,superfamily_RNaseH-like_dom,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA2	HGNC	ENSG00000080503	tier1	-	-	114	0	0.00	68	31	31.31
SMG1	0	genome.wustl.edu	37	16	18937310	18937312	+	In_Frame_Del	DEL	GCC	GCC	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	18937310	18937312	GCC	-	DEL	SMG1	ENST00000389467	human	ensembl	74_37	-1	known	in_frame_del	c.54_52	p.G18in_frame_del	1.000:1.000:1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	SMG1	HGNC	ENSG00000157106	tier1			9	0	0.00	12	5	29.41
SMG5	0	genome.wustl.edu	37	1	156236110	156236112	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	156236110	156236112	AGG	-	DEL	SMG5	ENST00000361813	human	ensembl	74_37	-1	known	in_frame_del	c.1317_1315	p.P439in_frame_del	0.000:0.054:0.042	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG5	HGNC	ENSG00000198952	tier1			52	0	0.00	48	14	22.58
SMG7	0	genome.wustl.edu	37	1	183511569	183511569	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	183511569	183511569	A	G	SNP	SMG7	ENST00000347615	human	ensembl	74_37	+1	known	missense	c.1774	p.K592E	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	tier1	-	-	57	0	0.00	34	19	35.85
SMPD4	0	genome.wustl.edu	37	2	130930875	130930875	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	130930875	130930875	C	T	SNP	SMPD4	ENST00000409031	human	ensembl	74_37	-1	known	missense	c.439	p.D147N	1.000	NULL	NULL	-	no_errors	SMPD4	HGNC	ENSG00000136699	tier1	-	-	86	0	0.00	69	35	33.65
SNAPC1	0	genome.wustl.edu	37	14	62242910	62242911	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	62242910	62242911	-	T	INS	SNAPC1	ENST00000216294	human	ensembl	74_37	+1	known	frame_shift_ins	c.632_633	p.D214fs	1.000:0.961	NULL	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	tier1			43	0	0.00	41	20	32.79
SNIP1	0	genome.wustl.edu	37	1	38018165	38018166	+	RNA	INS	-	-	AC			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	38018165	38018166	-	AC	INS	SNIP1	ENST00000493916	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SNIP1	HGNC	ENSG00000163877	tier1			51	0	0.00	38	10	20.83
SNORD114-24	0	genome.wustl.edu	37	14	101451181	101451181	+	RNA	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	101451181	101451181	T	C	SNP	SNORD114-24	ENST00000365029	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.161	-	-	-	no_errors	SNORD114-24	HGNC	ENSG00000201899	tier1	-	-	121	0	0.00	83	38	31.40
SNORD116-20	0	genome.wustl.edu	37	15	25333956	25333956	+	RNA	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	25333956	25333956	G	A	SNP	SNORD116-20	ENST00000384507	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.177	-	-	-	no_errors	SNORD116-20	HGNC	ENSG00000261069	tier1	-	-	368	0	0.00	211	108	33.86
SNUPN	0	genome.wustl.edu	37	15	75897504	75897505	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	75897504	75897505	-	T	INS	SNUPN	ENST00000371091	human	ensembl	74_37	-1	known	frame_shift_ins	c.791_790	p.T264fs	0.998:0.588	pirsf_Snurportin-1	pfam_Snurportin-1_N,pirsf_Snurportin-1,pfscan_Importin-a_IBB	-	no_errors	SNUPN	HGNC	ENSG00000169371	tier1			121	0	0.00	74	29	28.16
SOAT1	0	genome.wustl.edu	37	1	179316757	179316757	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	179316757	179316757	T	-	DEL	SOAT1	ENST00000367619	human	ensembl	74_37	+1	known	frame_shift_del	c.1140	p.F382fs	0.002	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	SOAT1	HGNC	ENSG00000057252	tier1			77	0	0.00	32	14	30.43
SON	0	genome.wustl.edu	37	21	34924270	34924270	+	Silent	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	34924270	34924270	T	G	SNP	SON	ENST00000356577	human	ensembl	74_37	+1	known	silent	c.2733	p.P911	0.998	NULL	pfam_G_patch_dom,superfamily_WD40_repeat_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_dsRNA-bd_dom	-	no_errors	SON	HGNC	ENSG00000159140	tier1	-	-	63	0	0.00	48	38	44.19
SORBS1	0	genome.wustl.edu	37	10	97096288	97096288	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	97096288	97096288	C	T	SNP	SORBS1	ENST00000361941	human	ensembl	74_37	-1	known	missense	c.3629	p.G1210D	0.911	superfamily_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_Sorb,superfamily_SH3_domain,smart_Sorb,smart_SH3_domain,pfscan_Sorb,pfscan_SH3_domain	-	no_errors	SORBS1	HGNC	ENSG00000095637	tier1	-	-	42	0	0.00	28	9	24.32
SORCS3	0	genome.wustl.edu	37	10	106924110	106924110	+	Silent	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	106924110	106924110	C	A	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	silent	c.1782	p.S594	0.956	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	tier1	-	-	47	0	0.00	20	10	33.33
SOWAHC	0	genome.wustl.edu	37	2	110373291	110373291	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	110373291	110373291	G	A	SNP	SOWAHC	ENST00000356454	human	ensembl	74_37	+1	known	missense	c.1225	p.G409S	0.988	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	SOWAHC	HGNC	ENSG00000198142	tier1	-	-	44	0	0.00	28	5	15.15
SOX7	0	genome.wustl.edu	37	8	10583692	10583692	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	10583692	10583692	C	T	SNP	SOX7	ENST00000553390	human	ensembl	74_37	-1	known	silent	c.879	p.P293	0.000	pfam_Sox_C_TAD	pfam_Sox_C_TAD,pfam_G_patch_dom,pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_G_patch_dom,pfscan_G_patch_dom,pfscan_HMG_box_dom	-	no_errors	SOX7	HGNC	ENSG00000171056	tier1	-	-	37	0	0.00	26	7	21.21
SP8	0	genome.wustl.edu	37	7	20824806	20824806	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	20824806	20824806	C	T	SNP	SP8	ENST00000418710	human	ensembl	74_37	-1	known	silent	c.630	p.S210	0.998	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2,prints_Antifreeze_1	-	no_errors	SP8	HGNC	ENSG00000164651	tier1	-	-	9	0	0.00	14	6	30.00
SPEN	0	genome.wustl.edu	37	1	16235913	16235914	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	16235913	16235914	0	A	INS	SPEN	ENST00000375759	human	ensembl	74_37	+1	known	frame_shift_ins	c.979_980	p.D329fs	1.000:1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC_like_C_dom,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526				145	0	0.00	151	11	6.79
SPNS2	0	genome.wustl.edu	37	17	4416604	4416604	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	4416604	4416604	T	C	SNP	SPNS2	ENST00000329078	human	ensembl	74_37	+1	known	missense	c.433	p.S145P	1.000	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SPNS2	HGNC	ENSG00000183018	tier1	-	-	44	0	0.00	31	21	40.38
SRCAP	0	genome.wustl.edu	37	16	30749860	30749860	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	30749860	30749860	G	-	DEL	SRCAP	ENST00000262518	human	ensembl	74_37	+1	known	frame_shift_del	c.8499	p.V2835fs	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	tier1			57	0	0.00	43	15	25.86
SREK1	0	genome.wustl.edu	37	5	65449338	65449338	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	65449338	65449338	G	A	SNP	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	missense	c.209	p.R70H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914	tier1	-	-	139	0	0.00	89	51	36.43
SREK1	0	genome.wustl.edu	37	5	65466604	65466604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	65466604	65466604	A	-	DEL	SREK1	ENST00000334121	human	ensembl	74_37	+1	known	frame_shift_del	c.1313	p.E440fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SREK1	HGNC	ENSG00000153914	tier1			9	0	0.00	6	3	33.33
SRP72	0	genome.wustl.edu	37	4	57333820	57333820	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	57333820	57333820	G	-	DEL	SRP72	ENST00000342756	human	ensembl	74_37	+1	known	frame_shift_del	c.19	p.V9fs	0.920	NULL	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780	tier1			13	0	0.00	16	5	23.81
SSX7	0	genome.wustl.edu	37	X	52677312	52677312	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	52677312	52677312	G	A	SNP	SSX7	ENST00000298181	human	ensembl	74_37	-1	known	silent	c.465	p.S155	0.003	pfam_SSXRD_motif	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754	tier1	-	-	205	0	0.00	109	57	34.34
ST3GAL4	0	genome.wustl.edu	37	11	126283889	126283889	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	126283889	126283889	G	A	SNP	ST3GAL4	ENST00000356132	human	ensembl	74_37	+1	known	missense	c.967	p.A323T	1.000	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL4	HGNC	ENSG00000110080	tier1	-	-	82	0	0.00	41	14	25.45
ST5	0	genome.wustl.edu	37	11	8752513	8752513	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	8752513	8752513	C	T	SNP	ST5	ENST00000313726	human	ensembl	74_37	-1	known	silent	c.324	p.A108	0.876	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	ST5	HGNC	ENSG00000166444	tier1	-	-	74	0	0.00	38	33	46.48
STAB1	0	genome.wustl.edu	37	3	52554301	52554301	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	52554301	52554301	C	T	SNP	STAB1	ENST00000321725	human	ensembl	74_37	+1	known	missense	c.5494	p.R1832W	0.002	pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,smart_EG-like_dom,smart_EGF_laminin,smart_FAS1_domain,smart_EGF-like_Ca-bd_dom,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB1	HGNC	ENSG00000010327	tier1	-	-	73	0	0.00	43	28	39.44
STAT1	0	genome.wustl.edu	37	2	191851647	191851647	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	191851647	191851647	G	A	SNP	STAT1	ENST00000361099	human	ensembl	74_37	-1	known	missense	c.1154	p.T385M	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_STAT1_TAZ2-bd_C,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT1	HGNC	ENSG00000115415	tier1	-	-	223	0	0.00	167	53	24.09
STAT2	0	genome.wustl.edu	37	12	56744034	56744034	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	56744034	56744034	A	-	DEL	STAT2	ENST00000557252	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	STAT2	HGNC	ENSG00000170581	tier1			29	0	0.00	46	12	20.69
STRC	0	genome.wustl.edu	37	15	43892280	43892280	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	43892280	43892280	G	A	SNP	STRC	ENST00000450892	human	ensembl	74_37	-1	known	missense	c.5117	p.S1706F	1.000	NULL	NULL	-	no_errors	STRC	HGNC	ENSG00000242866	tier1	-	-	39	0	0.00	27	11	28.95
SUPT6H	0	genome.wustl.edu	37	17	27024095	27024095	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	27024095	27024095	A	G	SNP	SUPT6H	ENST00000314616	human	ensembl	74_37	+1	known	missense	c.4204	p.S1402G	1.000	pfam_SH2,smart_SH2,pirsf_TF_Spt6,pfscan_SH2	pfam_Rbsml_prot_S1_RNA-bd_dom,pfam_SH2,superfamily_NA-bd_OB-fold,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,smart_SH2,pirsf_TF_Spt6,pfscan_SH2,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SUPT6H	HGNC	ENSG00000109111	tier1	-	-	29	0	0.00	16	11	40.74
SYCP3	0	genome.wustl.edu	37	12	102122900	102122901	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	102122900	102122901	-	T	INS	SYCP3	ENST00000266743	human	ensembl	74_37	-1	known	frame_shift_ins	c.644_643	p.I215fs	0.999:0.988	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351	tier1			67	0	0.00	50	15	23.08
SYCP3	0	genome.wustl.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	102122901	102122901	T	-	DEL	SYCP3	ENST00000266743	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.I215fs	0.988	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351	tier1			68	0	0.00	45	21	31.82
SYMPK	0	genome.wustl.edu	37	19	46328454	46328454	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	46328454	46328454	G	A	SNP	SYMPK	ENST00000245934	human	ensembl	74_37	-1	known	missense	c.2465	p.T822M	0.996	superfamily_ARM-type_fold	pfam_DUF3453,pfam_Symplekin_C,superfamily_ARM-type_fold	-	no_errors	SYMPK	HGNC	ENSG00000125755	tier1	-	-	95	0	0.00	77	30	28.04
SYNRG	0	genome.wustl.edu	37	17	35899301	35899301	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	35899301	35899301	G	A	SNP	SYNRG	ENST00000339208	human	ensembl	74_37	-1	known	missense	c.3413	p.A1138V	1.000	NULL	smart_EPS15_homology,pfscan_EPS15_homology	-	no_errors	SYNRG	HGNC	ENSG00000006114	tier1	-	-	73	0	0.00	49	5	9.26
TAF1B	0	genome.wustl.edu	37	2	9989571	9989571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	9989571	9989571	A	-	DEL	TAF1B	ENST00000263663	human	ensembl	74_37	+1	known	frame_shift_del	c.187	p.N66fs	0.991	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	tier1			27	0	0.00	26	5	16.13
TAF4B	0	genome.wustl.edu	37	18	23915191	23915191	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	18	23915191	23915191	A	G	SNP	TAF4B	ENST00000269142	human	ensembl	74_37	+1	known	missense	c.2312	p.K771R	1.000	pfam_TAF4	pfam_TAF4,pfam_TAFH_NHR1,superfamily_Histone-fold,smart_TAFH_NHR1,pfscan_TAFH_NHR1	-	no_errors	TAF4B	HGNC	ENSG00000141384	tier1	-	-	68	0	0.00	39	21	35.00
TASP1	0	genome.wustl.edu	37	20	13415772	13415772	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	13415772	13415772	C	T	SNP	TASP1	ENST00000337743	human	ensembl	74_37	-1	known	missense	c.1015	p.V339M	0.986	NULL	pfam_Peptidase_T2	-	no_errors	TASP1	HGNC	ENSG00000089123	tier1	-	-	15	0	0.00	12	7	36.84
TBC1D12	0	genome.wustl.edu	37	10	96259980	96259980	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	96259980	96259980	G	A	SNP	TBC1D12	ENST00000225235	human	ensembl	74_37	+1	known	missense	c.1415	p.R472H	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D12	HGNC	ENSG00000108239	tier1	-	-	25	0	0.00	25	12	32.43
TBC1D23	0	genome.wustl.edu	37	3	100039735	100039736	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	100039735	100039736	-	A	INS	TBC1D23	ENST00000394144	human	ensembl	74_37	+1	known	frame_shift_ins	c.1938_1939	p.H649fs	1.000:1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Rhodanese-like_dom,superfamily_Rab-GTPase-TBC_dom,superfamily_Rhodanese-like_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Rhodanese-like_dom	-	no_errors	TBC1D23	HGNC	ENSG00000036054	tier1			50	0	0.00	52	12	18.75
TBC1D25	0	genome.wustl.edu	37	X	48399742	48399742	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	48399742	48399742	C	T	SNP	TBC1D25	ENST00000376771	human	ensembl	74_37	+1	known	missense	c.145	p.P49S	0.300	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D25	HGNC	ENSG00000068354	tier1	-	-	213	0	0.00	145	61	29.61
TBC1D8B	0	genome.wustl.edu	37	X	106069300	106069300	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	106069300	106069300	T	-	DEL	TBC1D8B	ENST00000357242	human	ensembl	74_37	+1	known	frame_shift_del	c.868	p.F291fs	0.995	pfam_GRAM,smart_GRAM	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D8B	HGNC	ENSG00000133138	tier1			155	0	0.00	98	43	30.50
TBCD	0	genome.wustl.edu	37	17	80865646	80865646	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	80865646	80865646	G	A	SNP	TBCD	ENST00000355528	human	ensembl	74_37	+1	known	silent	c.1932	p.T644	0.003	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	tier1	-	-	22	0	0.00	21	5	19.23
TBX18	0	genome.wustl.edu	37	6	85470072	85470072	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	85470072	85470072	C	T	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.500	p.R167H	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	tier1	-	-	59	0	0.00	19	19	50.00
TCP11L1	0	genome.wustl.edu	37	11	33076207	33076207	+	Missense_Mutation	SNP	C	C	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	33076207	33076207	C	G	SNP	TCP11L1	ENST00000527661	human	ensembl	74_37	+1	known	missense	c.232	p.L78V	0.729	pfam_Tcp11	pfam_Tcp11	-	no_errors	TCP11L1	HGNC	ENSG00000176148	tier1	-	-	97	0	0.00	65	18	21.69
TCTEX1D2	0	genome.wustl.edu	37	3	196018247	196018248	+	Splice_Site	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	196018247	196018248	-	A	INS	TCTEX1D2	ENST00000325318	human	ensembl	74_37	-1	known	splice_site_ins	c.382-3_382-2	e5-2	0.958:0.736	-	-	-	no_errors	TCTEX1D2	HGNC	ENSG00000213123	tier1			112	0	0.00	97	29	23.02
TDRD3	0	genome.wustl.edu	37	13	61102993	61102994	+	Frame_Shift_Ins	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	61102993	61102994	-	T	INS	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	frame_shift_ins	c.1634_1635	p.Y547fs	0.998:0.997	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	tier1			56	0	0.00	33	22	40.00
TDRD6	0	genome.wustl.edu	37	6	46657944	46657944	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	46657944	46657944	G	A	SNP	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	silent	c.2079	p.T693	0.000	NULL	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	tier1	-	-	72	0	0.00	29	23	44.23
TEAD2	0	genome.wustl.edu	37	19	49850473	49850474	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	49850473	49850474	GG	-	DEL	TEAD2	ENST00000311227	human	ensembl	74_37	-1	known	frame_shift_del	c.883_882	p.H295fs	0.961:0.528	pfam_TEA/ATTS,pirsf_TEF	pfam_TEA/ATTS,smart_TEA/ATTS,pirsf_TEF,pfscan_TEA/ATTS,prints_TEA/ATTS	-	no_errors	TEAD2	HGNC	ENSG00000074219	tier1			197	0	0.00	113	34	23.13
TENM1	0	genome.wustl.edu	37	X	123554388	123554388	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	123554388	123554388	C	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	silent	c.4755	p.A1585	0.128	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	85	0	0.00	64	32	32.65
TEP1	0	genome.wustl.edu	37	14	20845640	20845640	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	20845640	20845640	C	-	DEL	TEP1	ENST00000262715	human	ensembl	74_37	-1	known	frame_shift_del	c.5887	p.A1963fs	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_TROVE,pfam_TEP1_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_P-loop_NTPase,smart_WD40_repeat,pfscan_NACHT_NTPase,pfscan_TROVE,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TEP1	HGNC	ENSG00000129566	tier1			46	0	0.00	47	17	26.56
TGFBI	0	genome.wustl.edu	37	5	135383107	135383107	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	5	135383107	135383107	C	T	SNP	TGFBI	ENST00000305126	human	ensembl	74_37	+1	known	missense	c.769	p.R257W	0.990	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,pfscan_FAS1_domain	pirsf_TGFb-ind_bIGH3/osteoblast_fac2,pfam_FAS1_domain,superfamily_FAS1_domain,smart_FAS1_domain,pfscan_EMI_domain,pfscan_FAS1_domain	-	no_errors	TGFBI	HGNC	ENSG00000120708	tier1	-	-	215	0	0.00	132	58	30.53
TIAL1	0	genome.wustl.edu	37	10	121335156	121335157	+	RNA	INS	-	-	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	121335156	121335157	-	T	INS	TIAL1	ENST00000463089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995:0.987	-	-	-	no_errors	TIAL1	HGNC	ENSG00000151923	tier1			143	0	0.00	97	25	20.49
TJP1	0	genome.wustl.edu	37	15	30010842	30010842	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	30010842	30010842	A	G	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	silent	c.3504	p.H1168	0.001	NULL	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	tier1	-	-	72	0	0.00	47	32	40.00
TLDC1	0	genome.wustl.edu	37	16	84520430	84520430	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	84520430	84520430	G	A	SNP	TLDC1	ENST00000343629	human	ensembl	74_37	-1	known	silent	c.765	p.N255	0.917	smart_TLDc	pfam_TLDc,smart_TLDc	-	no_errors	TLDC1	HGNC	ENSG00000140950	tier1	-	-	67	0	0.00	29	9	23.68
TM6SF1	0	genome.wustl.edu	37	15	83776585	83776585	+	RNA	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	83776585	83776585	C	T	SNP	TM6SF1	ENST00000564988	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.098	-	-	-	no_errors	TM6SF1	HGNC	ENSG00000136404	tier1	-	-	9	0	0.00	6	4	40.00
TM7SF2	0	genome.wustl.edu	37	11	64882837	64882837	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	64882837	64882837	G	A	SNP	TM7SF2	ENST00000279263	human	ensembl	74_37	+1	known	missense	c.944	p.R315Q	0.616	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	pfam_Ergosterol_biosynth_ERG4_ERG24,pfam_DUF1295	-	no_errors	TM7SF2	HGNC	ENSG00000149809	tier1	rs201258810	-	92	0	0.00	117	33	21.85
TM9SF2	0	genome.wustl.edu	37	13	100192902	100192902	+	RNA	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	100192902	100192902	T	-	DEL	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304	tier1			33	0	0.00	25	7	21.88
TMEM138	0	genome.wustl.edu	37	11	61136107	61136107	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	61136107	61136107	G	A	SNP	TMEM138	ENST00000278826	human	ensembl	74_37	+1	known	missense	c.415	p.V139I	0.000	NULL	NULL	-	no_errors	TMEM138	HGNC	ENSG00000149483	tier1	rs141029883	-	58	0	0.00	27	14	34.15
TMEM181	0	genome.wustl.edu	37	6	159006386	159006386	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	6	159006386	159006386	G	T	SNP	TMEM181	ENST00000367090	human	ensembl	74_37	+1	known	missense	c.721	p.A241S	0.844	NULL	NULL	-	no_errors	TMEM181	HGNC	ENSG00000146433	tier1	-	-	81	0	0.00	57	23	28.75
TMEM63C	0	genome.wustl.edu	37	14	77708808	77708808	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	77708808	77708808	A	G	SNP	TMEM63C	ENST00000298351	human	ensembl	74_37	+1	known	missense	c.1183	p.I395V	1.000	pfam_DUF221	pfam_DUF221	-	no_errors	TMEM63C	HGNC	ENSG00000165548	tier1	-	-	142	0	0.00	60	41	40.59
TMEM67	0	genome.wustl.edu	37	8	94828723	94828723	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	94828723	94828723	A	-	DEL	TMEM67	ENST00000463467	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.614	-	-	-	no_errors	TMEM67	HGNC	ENSG00000164953	tier1			43	0	0.00	41	11	21.15
TNK2	0	genome.wustl.edu	37	3	195594416	195594416	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	195594416	195594416	G	A	SNP	TNK2	ENST00000381916	human	ensembl	74_37	-1	known	missense	c.2942	p.A981V	0.861	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cdc42_binding_dom_like,pfam_Inhibitor_Mig-6,superfamily_Kinase-like_dom,superfamily_SH3_domain,superfamily_SAM/pointed,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SH3_domain,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_SH3_domain,pfscan_Prot_kinase_dom	-	no_errors	TNK2	HGNC	ENSG00000061938	tier1	-	-	8	0	0.00	4	7	63.64
TNPO3	0	genome.wustl.edu	37	7	128610258	128610259	+	Frame_Shift_Ins	INS	-	-	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	128610258	128610259	-	G	INS	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	frame_shift_ins	c.2644_2643	p.Y881fs	1.000:0.805	NULL	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	tier1			152	0	0.00	116	36	23.68
TNRC6B	0	genome.wustl.edu	37	22	40660882	40660882	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	40660882	40660882	C	T	SNP	TNRC6B	ENST00000454349	human	ensembl	74_37	+1	known	silent	c.648	p.T216	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	tier1	-	-	108	0	0.00	81	25	23.58
TONSL	0	genome.wustl.edu	37	8	145663906	145663906	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	145663906	145663906	T	C	SNP	TONSL	ENST00000409379	human	ensembl	74_37	-1	known	missense	c.1601	p.H534R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TONSL	HGNC	ENSG00000160949	tier1	-	-	31	0	0.00	62	9	12.50
TOPBP1	0	genome.wustl.edu	37	3	133329880	133329880	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	133329880	133329880	T	-	DEL	TOPBP1	ENST00000260810	human	ensembl	74_37	-1	known	frame_shift_del	c.4141	p.I1381fs	0.605	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	tier1			168	0	0.00	121	43	26.22
TPR	0	genome.wustl.edu	37	1	186340109	186340109	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	186340109	186340109	G	A	SNP	TPR	ENST00000367478	human	ensembl	74_37	-1	known	missense	c.323	p.A108V	0.569	NULL	pfam_TPR_MLP1_2,superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	TPR	HGNC	ENSG00000047410	tier1	-	-	183	0	0.00	140	51	26.42
TPX2	0	genome.wustl.edu	37	20	30370128	30370128	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	30370128	30370128	T	C	SNP	TPX2	ENST00000340513	human	ensembl	74_37	+1	known	silent	c.1239	p.R413	0.000	pfam_TPX2_central_dom	pfam_TPX2_central_dom,pfam_Aurora-A-bd,pfam_TPX2_dom_C	-	no_errors	TPX2	HGNC	ENSG00000088325	tier1	-	-	106	0	0.00	78	35	30.97
TRAF3	0	genome.wustl.edu	37	14	103371998	103371998	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	103371998	103371998	G	A	SNP	TRAF3	ENST00000392745	human	ensembl	74_37	+1	known	missense	c.1584	p.M528I	1.000	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323	tier1	-	-	128	0	0.00	75	41	35.34
TREX1	0	genome.wustl.edu	37	3	48508122	48508122	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	48508122	48508122	G	A	SNP	TREX1	ENST00000422277	human	ensembl	74_37	+1	known	missense	c.233	p.G78D	1.000	superfamily_RNaseH-like_dom,smart_Exonuclease	superfamily_RNaseH-like_dom,smart_Exonuclease	-	no_errors	TREX1	HGNC	ENSG00000213689	tier1	-	-	142	0	0.00	112	33	22.76
TRIM3	0	genome.wustl.edu	37	11	6472535	6472536	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	6472535	6472536	-	A	INS	TRIM3	ENST00000345851	human	ensembl	74_37	-1	known	frame_shift_ins	c.1667_1666	p.W556fs	1.000:1.000	pfam_NHL_repeat,pfscan_NHL_repeat_subgr	pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM3	HGNC	ENSG00000110171	tier1			77	0	0.00	52	22	29.73
TRIM46	0	genome.wustl.edu	37	1	155152179	155152179	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	155152179	155152179	C	-	DEL	TRIM46	ENST00000334634	human	ensembl	74_37	+1	known	frame_shift_del	c.1357	p.H455fs	1.000	superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box	-	no_errors	TRIM46	HGNC	ENSG00000163462	tier1			24	0	0.00	22	11	33.33
TRIM49C	0	genome.wustl.edu	37	11	89768511	89768511	+	Missense_Mutation	SNP	A	A	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	89768511	89768511	A	T	SNP	TRIM49C	ENST00000448984	human	ensembl	74_37	+1	known	missense	c.132	p.Q44H	0.331	smart_Znf_RING,pfscan_Znf_RING	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49C	HGNC	ENSG00000204449	tier1	-	-	49	0	0.00	25	26	50.98
TRIM60	0	genome.wustl.edu	37	4	165962194	165962194	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	165962194	165962194	C	T	SNP	TRIM60	ENST00000341062	human	ensembl	74_37	+1	known	nonsense	c.970	p.R324*	0.000	superfamily_ConA-like_lec_gl_sf,smart_PRY,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM60	HGNC	ENSG00000176979	tier1	-	-	114	0	0.00	66	39	36.79
TRPS1	0	genome.wustl.edu	37	8	116617077	116617077	+	Missense_Mutation	SNP	G	G	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	116617077	116617077	G	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.1119	p.N373K	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	tier1	-	-	74	0	0.00	79	21	21.00
TSHZ2	0	genome.wustl.edu	37	20	51871054	51871054	+	Nonsense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	51871054	51871054	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	74_37	+1	known	nonsense	c.1057	p.Q353*	0.937	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	tier1	-	-	87	0	0.00	65	22	25.29
TSR2	0	genome.wustl.edu	37	X	54470916	54470916	+	Missense_Mutation	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	54470916	54470916	A	G	SNP	TSR2	ENST00000375151	human	ensembl	74_37	+1	known	missense	c.509	p.D170G	0.000	NULL	pfam_Pre-rRNA_process_TSR2	-	no_errors	TSR2	HGNC	ENSG00000158526	tier1	-	-	41	0	0.00	25	17	40.48
TTC13	0	genome.wustl.edu	37	1	231096989	231096989	+	Missense_Mutation	SNP	T	T	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	231096989	231096989	T	A	SNP	TTC13	ENST00000366661	human	ensembl	74_37	-1	known	missense	c.332	p.D111V	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC13	HGNC	ENSG00000143643	tier1	-	-	28	0	0.00	17	9	34.62
TTC29	0	genome.wustl.edu	37	4	147628705	147628705	+	Splice_Site	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	4	147628705	147628705	T	C	SNP	TTC29	ENST00000398886	human	ensembl	74_37	-1	known	splice_site	c.1409-2	e11-2	0.078	-	-	-	no_errors	TTC29	HGNC	ENSG00000137473	tier1	-	-	26	0	0.00	26	14	34.15
TTC40	0	genome.wustl.edu	37	10	134660515	134660515	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	134660515	134660515	G	A	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.671	p.A224V	0.001	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	14	0	0.00	8	7	46.67
TTC7B	0	genome.wustl.edu	37	14	91077134	91077134	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	91077134	91077134	G	A	SNP	TTC7B	ENST00000357056	human	ensembl	74_37	-1	known	nonsense	c.1918	p.R640*	1.000	NULL	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7B	HGNC	ENSG00000165914	tier1	-	-	239	0	0.00	121	62	33.70
TTC9	0	genome.wustl.edu	37	14	71109123	71109123	+	Frame_Shift_Del	DEL	C	C	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	71109123	71109123	C	-	DEL	TTC9	ENST00000256367	human	ensembl	74_37	+1	known	frame_shift_del	c.277	p.E96fs	0.005	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9	HGNC	ENSG00000133985	tier1			12	0	0.00	13	6	31.58
TTC9C	0	genome.wustl.edu	37	11	62502997	62502997	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	11	62502997	62502997	C	T	SNP	TTC9C	ENST00000316461	human	ensembl	74_37	+1	known	missense	c.382	p.R128C	0.954	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC9C	HGNC	ENSG00000162222	tier1	-	-	51	0	0.00	27	19	41.30
TTN	0	genome.wustl.edu	37	2	179413255	179413255	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	179413255	179413255	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.85394	p.A28465V	0.778	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	212	0	0.00	133	55	29.26
TTN	0	genome.wustl.edu	37	2	179566920	179566920	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	179566920	179566920	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.26754	p.T8918	0.029	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	61	0	0.00	48	6	11.11
TUBB3	0	genome.wustl.edu	37	16	90001516	90001516	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	90001516	90001516	G	A	SNP	TUBB3	ENST00000315491	human	ensembl	74_37	+1	known	silent	c.657	p.T219	0.980	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Beta_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Uniprot_gn	ENSG00000258947	tier1	-	-	83	0	0.00	60	38	38.78
TVP23A	0	genome.wustl.edu	37	16	10912385	10912385	+	RNA	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	10912385	10912385	G	-	DEL	TVP23A	ENST00000570692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TVP23A	HGNC	ENSG00000166676	tier1			18	0	0.00	23	6	20.69
TYW5	0	genome.wustl.edu	37	2	200820114	200820114	+	Splice_Site	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	200820114	200820114	A	G	SNP	TYW5	ENST00000354611	human	ensembl	74_37	-1	known	splice_site	c.78+2	e1+2	1.000	-	-	-	no_errors	TYW5	HGNC	ENSG00000162971	tier1	-	-	22	0	0.00	8	5	38.46
U2AF1	0	genome.wustl.edu	37	21	44514593	44514593	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	44514593	44514593	C	T	SNP	U2AF1	ENST00000291552	human	ensembl	74_37	-1	known	missense	c.563	p.R188H	1.000	NULL	pfam_Znf_CCCH,pfam_RRM_dom,smart_Znf_CCCH,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom,prints_U2_small	-	no_errors	U2AF1	HGNC	ENSG00000160201	tier1	-	-	54	0	0.00	38	8	17.39
UAP1L1	0	genome.wustl.edu	37	9	139973491	139973491	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	9	139973491	139973491	G	-	DEL	UAP1L1	ENST00000409858	human	ensembl	74_37	+1	known	frame_shift_del	c.734	p.G246fs	0.998	pfam_UDPGP_trans	pfam_UDPGP_trans	-	no_errors	UAP1L1	HGNC	ENSG00000197355	tier1			65	0	0.00	33	16	32.65
UBE2N	0	genome.wustl.edu	37	12	93805030	93805030	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	12	93805030	93805030	C	T	SNP	UBE2N	ENST00000318066	human	ensembl	74_37	-1	known	missense	c.76	p.E26K	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2N	HGNC	ENSG00000177889	tier1	-	-	103	0	0.00	74	49	39.84
UBN2	0	genome.wustl.edu	37	7	138978663	138978663	+	Silent	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	138978663	138978663	A	C	SNP	UBN2	ENST00000473989	human	ensembl	74_37	+1	known	silent	c.3930	p.G1310	1.000	NULL	NULL	-	no_errors	UBN2	HGNC	ENSG00000157741	tier1	-	-	70	0	0.00	41	29	41.43
UBR5	0	genome.wustl.edu	37	8	103297968	103297968	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	103297968	103297968	G	A	SNP	UBR5	ENST00000520539	human	ensembl	74_37	-1	known	missense	c.5257	p.R1753C	1.000	NULL	pfam_HECT,pfam_E3_UbLigase_EDD_UBA,pfam_PABP_HYD,pfam_Znf_N-recognin,superfamily_HECT,superfamily_PABP_HYD,superfamily_RCC1/BLIP-II,smart_Znf_N-recognin_met,smart_PABP_HYD,smart_HECT,pfscan_HECT,pfscan_Znf_N-recognin	-	no_errors	UBR5	HGNC	ENSG00000104517	tier1	-	-	89	0	0.00	96	27	21.95
UPB1	0	genome.wustl.edu	37	22	24909359	24909359	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	22	24909359	24909359	T	-	DEL	UPB1	ENST00000326010	human	ensembl	74_37	+1	known	frame_shift_del	c.527	p.L177fs	0.002	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	pfam_C-N_Hydrolase,superfamily_C-N_Hydrolase,pfscan_C-N_Hydrolase	-	no_errors	UPB1	HGNC	ENSG00000100024	tier1			53	0	0.00	46	16	25.81
UPF2	0	genome.wustl.edu	37	10	12077223	12077223	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	12077223	12077223	T	-	DEL	UPF2	ENST00000356352	human	ensembl	74_37	-1	known	frame_shift_del	c.200	p.K67fs	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Up-fram_suppressor-2,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	UPF2	HGNC	ENSG00000151461	tier1			151	0	0.00	87	42	32.56
UQCRFS1	0	genome.wustl.edu	37	19	29699002	29699002	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	29699002	29699002	C	T	SNP	UQCRFS1	ENST00000304863	human	ensembl	74_37	-1	known	missense	c.278	p.R93H	0.917	pfam_Ubiquinol_cyt_Rdtase_TM	pfam_Ubiqinol_cyt_c_Rdtase_N,pfam_Ubiquinol_cyt_Rdtase_TM,pfam_Rieske_2Fe-2S,superfamily_Rieske_2Fe-2S,superfamily_Globular_prot_asu/bsu,prints_Rieske_Fe-S_prot_C,tigrfam_Ubiquinol_cyt_c_Rdtase_Fe-S-su	-	no_errors	UQCRFS1	HGNC	ENSG00000169021	tier1	rs148167893	-	92	0	0.00	92	9	8.91
URI1	0	genome.wustl.edu	37	19	30502026	30502026	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	30502026	30502026	C	T	SNP	URI1	ENST00000542441	human	ensembl	74_37	+1	known	missense	c.1061	p.T354I	1.000	NULL	pfam_Prefoldin_subunit_alpha,superfamily_Prefoldin	-	no_errors	URI1	HGNC	ENSG00000105176	tier1	-	-	126	0	0.00	85	43	33.59
USH2A	0	genome.wustl.edu	37	1	216591920	216591920	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	216591920	216591920	G	A	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.587	p.P196L	1.000	superfamily_ConA-like_lec_gl_sf,smart_LamG-like	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	144	0	0.00	64	32	33.33
USP26	0	genome.wustl.edu	37	X	132161205	132161205	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	132161205	132161205	A	-	DEL	USP26	ENST00000370832	human	ensembl	74_37	-1	known	frame_shift_del	c.1044	p.F348fs	0.541	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP26	HGNC	ENSG00000134588	tier1			105	0	0.00	79	27	25.47
USP39	0	genome.wustl.edu	37	2	85852780	85852780	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	85852780	85852780	T	C	SNP	USP39	ENST00000409470	human	ensembl	74_37	+1	known	missense	c.689	p.I230T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP39	HGNC	ENSG00000168883	tier1	-	-	80	0	0.00	46	26	36.11
USP40	0	genome.wustl.edu	37	2	234407253	234407253	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	234407253	234407253	C	T	SNP	USP40	ENST00000450966	human	ensembl	74_37	-1	known	missense	c.2689	p.A897T	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP40	HGNC	ENSG00000085982	tier1	-	-	26	0	0.00	40	14	25.93
VIM	0	genome.wustl.edu	37	10	17271775	17271775	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	17271775	17271775	C	T	SNP	VIM	ENST00000224237	human	ensembl	74_37	+1	known	silent	c.354	p.I118	1.000	pfam_IF	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin	-	no_errors	VIM	HGNC	ENSG00000026025	tier1	-	-	9	0	0.00	9	5	35.71
VPS45	0	genome.wustl.edu	37	1	150082513	150082514	+	RNA	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	150082513	150082514	-	A	INS	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965:0.965	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631	tier1			16	0	0.00	10	3	23.08
WASL	0	genome.wustl.edu	37	7	123388769	123388769	+	Missense_Mutation	SNP	T	T	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	123388769	123388769	T	G	SNP	WASL	ENST00000223023	human	ensembl	74_37	-1	known	missense	c.20	p.Q7P	0.996	NULL	pfam_WH1/EVH1,pfam_CRIB_dom,pfam_WH2_dom,superfamily_WASP_C,smart_WH1/EVH1,smart_CRIB_dom,smart_WH2_dom,pfscan_CRIB_dom,pfscan_WH1/EVH1,pfscan_WH2_dom	-	no_errors	WASL	HGNC	ENSG00000106299	tier1	-	-	16	0	0.00	10	6	37.50
WDPCP	0	genome.wustl.edu	37	2	63540414	63540414	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	63540414	63540414	G	A	SNP	WDPCP	ENST00000272321	human	ensembl	74_37	-1	known	missense	c.1781	p.A594V	1.000	pfam_DUF3312	pfam_DUF3312,superfamily_WD40_repeat_dom	-	no_errors	WDPCP	HGNC	ENSG00000143951	tier1	-	-	42	0	0.00	35	12	25.53
WDR26	0	genome.wustl.edu	37	1	224586736	224586736	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	224586736	224586736	C	T	SNP	WDR26	ENST00000414423	human	ensembl	74_37	-1	known	missense	c.1420	p.D474N	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR26	HGNC	ENSG00000162923	tier1	-	-	63	0	0.00	49	13	20.97
WDR35	0	genome.wustl.edu	37	2	20146231	20146231	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	20146231	20146231	C	T	SNP	WDR35	ENST00000345530	human	ensembl	74_37	-1	known	missense	c.1658	p.C553Y	1.000	superfamily_WD40_repeat_dom,pirsf_WD_repeat_p35	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pirsf_WD_repeat_p35,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR35	HGNC	ENSG00000118965	tier1	-	-	95	0	0.00	75	7	8.54
WEE2	0	genome.wustl.edu	37	7	141408842	141408842	+	Missense_Mutation	SNP	C	C	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	141408842	141408842	C	A	SNP	WEE2	ENST00000397541	human	ensembl	74_37	+1	known	missense	c.284	p.P95Q	0.139	pirsf_Wee1-like_protein_kinase	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_dom	-	no_errors	WEE2	HGNC	ENSG00000214102	tier1	-	-	151	0	0.00	87	30	25.64
WRAP73	0	genome.wustl.edu	37	1	3551750	3551750	+	Frame_Shift_Del	DEL	G	G	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	3551750	3551750	G	-	DEL	WRAP73	ENST00000270708	human	ensembl	74_37	-1	known	frame_shift_del	c.712	p.L238fs	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WRAP73	HGNC	ENSG00000116213	tier1			60	0	0.00	32	19	37.25
XAF1	0	genome.wustl.edu	37	17	6674068	6674068	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	17	6674068	6674068	C	T	SNP	XAF1	ENST00000361842	human	ensembl	74_37	+1	known	missense	c.614	p.T205M	0.000	NULL	superfamily_TRAF-like,pfscan_Znf_TRAF	-	no_errors	XAF1	HGNC	ENSG00000132530	tier1	-	-	75	0	0.00	47	22	31.88
XDH	0	genome.wustl.edu	37	2	31572658	31572658	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	31572658	31572658	G	A	SNP	XDH	ENST00000379416	human	ensembl	74_37	-1	known	missense	c.2863	p.H955Y	0.998	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	tier1	-	-	80	0	0.00	40	39	49.37
XIAP	0	genome.wustl.edu	37	X	123026609	123026609	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	123026609	123026609	T	C	SNP	XIAP	ENST00000355640	human	ensembl	74_37	+1	known	missense	c.1085	p.L362P	0.324	NULL	pfam_BIR,smart_BIR,smart_Znf_RING,pfscan_BIR,pfscan_Znf_RING	-	no_errors	XIAP	HGNC	ENSG00000101966	tier1	-	-	224	0	0.00	144	54	27.14
XIRP2	0	genome.wustl.edu	37	2	168099557	168099557	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	2	168099557	168099557	G	A	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.1655	p.S552N	0.937	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	64	0	0.00	19	11	35.48
YY1	0	genome.wustl.edu	37	14	100728643	100728644	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	100728643	100728644	-	A	INS	YY1	ENST00000262238	human	ensembl	74_37	+1	known	frame_shift_ins	c.682_683	p.D231fs	1.000:1.000	pirsf_TF_Yin_yang	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_TF_Yin_yang,pfscan_Znf_C2H2	-	no_errors	YY1	HGNC	ENSG00000100811	tier1			74	0	0.00	47	19	28.79
ZBTB1	0	genome.wustl.edu	37	14	64988813	64988813	+	Silent	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	14	64988813	64988813	C	T	SNP	ZBTB1	ENST00000394712	human	ensembl	74_37	+1	known	silent	c.591	p.S197	0.130	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB1	HGNC	ENSG00000126804	tier1	-	-	82	0	0.00	60	29	32.22
ZBTB21	0	genome.wustl.edu	37	21	43413803	43413803	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	21	43413803	43413803	T	-	DEL	ZBTB21	ENST00000310826	human	ensembl	74_37	-1	known	frame_shift_del	c.402	p.V135fs	0.002	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB21	HGNC	ENSG00000173276	tier1			129	0	0.00	69	16	18.82
ZBTB46	0	genome.wustl.edu	37	20	62407296	62407296	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	62407296	62407296	G	A	SNP	ZBTB46	ENST00000245663	human	ensembl	74_37	-1	known	silent	c.957	p.T319	0.002	NULL	pfam_BTB_POZ,pfam_DUF3342,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB46	HGNC	ENSG00000130584	tier1	-	-	34	0	0.00	34	11	24.44
ZC3H13	0	genome.wustl.edu	37	13	46577381	46577381	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	13	46577381	46577381	T	-	DEL	ZC3H13	ENST00000242848	human	ensembl	74_37	-1	known	frame_shift_del	c.837	p.K279fs	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	tier1			80	0	0.00	61	12	16.44
ZCCHC11	0	genome.wustl.edu	37	1	52991928	52991928	+	Frame_Shift_Del	DEL	T	T	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	52991928	52991928	T	-	DEL	ZCCHC11	ENST00000257177	human	ensembl	74_37	-1	known	frame_shift_del	c.25	p.S9fs	1.000	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,pfam_Nucleotidyltransferase,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC11	HGNC	ENSG00000134744	tier1			45	0	0.00	34	13	27.66
ZFAT	0	genome.wustl.edu	37	8	135621038	135621038	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	135621038	135621038	G	T	SNP	ZFAT	ENST00000377838	human	ensembl	74_37	-1	known	missense	c.719	p.P240H	0.320	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFAT	HGNC	ENSG00000066827	tier1	-	-	75	0	0.00	92	32	25.81
ZFAT-AS1	0	genome.wustl.edu	37	8	135612914	135612914	+	RNA	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	8	135612914	135612914	A	-	DEL	ZFAT-AS1	ENST00000505776	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZFAT-AS1	HGNC	ENSG00000248492	tier1			28	0	0.00	38	8	17.39
ZFX	0	genome.wustl.edu	37	X	24197707	24197707	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	24197707	24197707	G	A	SNP	ZFX	ENST00000540034	human	ensembl	74_37	+1	known	missense	c.583	p.V195M	0.996	pfam_Transcrp_activ_Zfx/Zfy-dom	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFX	HGNC	ENSG00000005889	tier1	-	-	203	0	0.00	133	60	31.09
ZNF208	0	genome.wustl.edu	37	19	22155549	22155549	+	Missense_Mutation	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	22155549	22155549	T	C	SNP	ZNF208	ENST00000397126	human	ensembl	74_37	-1	novel	missense	c.2287	p.T763A	0.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	tier1	-	-	59	0	0.00	47	11	18.97
ZNF319	0	genome.wustl.edu	37	16	58031334	58031334	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	16	58031334	58031334	G	A	SNP	ZNF319	ENST00000299237	human	ensembl	74_37	-1	known	missense	c.836	p.A279V	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF319	HGNC	ENSG00000166188	tier1	-	-	59	0	0.00	47	13	21.67
ZNF326	0	genome.wustl.edu	37	1	90478763	90478763	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	1	90478763	90478763	A	-	DEL	ZNF326	ENST00000340281	human	ensembl	74_37	+1	known	frame_shift_del	c.893	p.N300fs	1.000	NULL	pfam_AKAP95	-	no_errors	ZNF326	HGNC	ENSG00000162664	tier1			38	0	0.00	30	14	31.82
ZNF337	0	genome.wustl.edu	37	20	25657029	25657029	+	Nonsense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	20	25657029	25657029	G	A	SNP	ZNF337	ENST00000252979	human	ensembl	74_37	-1	known	nonsense	c.895	p.R299*	0.208	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF337	HGNC	ENSG00000130684	tier1	-	-	206	0	0.00	185	19	9.27
ZNF445	0	genome.wustl.edu	37	3	44497033	44497033	+	Silent	SNP	T	T	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	3	44497033	44497033	T	C	SNP	ZNF445	ENST00000396077	human	ensembl	74_37	-1	known	silent	c.9	p.P3	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF445	HGNC	ENSG00000185219	tier1	-	-	54	0	0.00	33	15	31.25
ZNF518A	0	genome.wustl.edu	37	10	97920553	97920553	+	RNA	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	10	97920553	97920553	A	C	SNP	ZNF518A	ENST00000534948	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	ZNF518A	HGNC	ENSG00000177853	tier1	-	-	12	0	0.00	6	4	40.00
ZNF565	0	genome.wustl.edu	37	19	36673884	36673884	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	36673884	36673884	G	A	SNP	ZNF565	ENST00000304116	human	ensembl	74_37	-1	known	silent	c.984	p.I328	0.308	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	tier1	-	-	48	0	0.00	38	27	41.54
ZNF568	0	genome.wustl.edu	37	19	37441513	37441513	+	Missense_Mutation	SNP	G	G	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	37441513	37441513	G	T	SNP	ZNF568	ENST00000333987	human	ensembl	74_37	+1	known	missense	c.1458	p.M486I	0.489	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF568	HGNC	ENSG00000198453	tier1	-	-	73	0	0.00	56	27	32.53
ZNF57	0	genome.wustl.edu	37	19	2917858	2917858	+	Silent	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	2917858	2917858	G	A	SNP	ZNF57	ENST00000306908	human	ensembl	74_37	+1	known	silent	c.1239	p.T413	0.013	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF57	HGNC	ENSG00000171970	tier1	-	-	95	0	0.00	56	23	29.11
ZNF609	0	genome.wustl.edu	37	15	64966372	64966372	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	64966372	64966372	G	A	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.1319	p.R440Q	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	tier1	-	-	87	0	0.00	46	31	40.26
ZNF609	0	genome.wustl.edu	37	15	64966970	64966970	+	Missense_Mutation	SNP	A	A	C			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	15	64966970	64966970	A	C	SNP	ZNF609	ENST00000326648	human	ensembl	74_37	+1	known	missense	c.1917	p.K639N	0.029	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF609	HGNC	ENSG00000180357	tier1	-	-	56	0	0.00	49	21	30.00
ZNF616	0	genome.wustl.edu	37	19	52619205	52619205	+	Silent	SNP	A	A	G			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	52619205	52619205	A	G	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	silent	c.1212	p.T404	0.976	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	tier1	-	-	292	0	0.00	170	81	32.27
ZNF711	0	genome.wustl.edu	37	X	84525714	84525715	+	Frame_Shift_Ins	INS	-	-	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	X	84525714	84525715	-	A	INS	ZNF711	ENST00000395402	human	ensembl	74_37	+1	known	frame_shift_ins	c.1190_1191	p.F400fs	1.000:0.997	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Transcrp_activ_Zfx/Zfy-dom,pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF711	HGNC	ENSG00000147180	tier1			36	0	0.00	27	15	35.71
ZNF776	0	genome.wustl.edu	37	19	58264857	58264857	+	Frame_Shift_Del	DEL	A	A	-			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	58264857	58264857	A	-	DEL	ZNF776	ENST00000317178	human	ensembl	74_37	+1	known	frame_shift_del	c.359	p.K122fs	0.001	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF776	HGNC	ENSG00000152443	tier1			60	0	0.00	39	8	17.02
ZNF777	0	genome.wustl.edu	37	7	149129037	149129037	+	Missense_Mutation	SNP	G	G	A			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	7	149129037	149129037	G	A	SNP	ZNF777	ENST00000247930	human	ensembl	74_37	-1	known	missense	c.2326	p.R776W	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,pfam_DUF3669_Znf,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF777	HGNC	ENSG00000196453	tier1	-	-	84	0	0.00	42	31	42.47
ZNF792	0	genome.wustl.edu	37	19	35449059	35449059	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	35449059	35449059	C	T	SNP	ZNF792	ENST00000404801	human	ensembl	74_37	-1	known	missense	c.1700	p.C567Y	0.999	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF792	HGNC	ENSG00000180884	tier1	-	-	41	0	0.00	23	6	20.69
ZSCAN1	0	genome.wustl.edu	37	19	58565040	58565040	+	Missense_Mutation	SNP	C	C	T			TCGA-SW-A7EA-01A-12D-A34U-08	TCGA-SW-A7EA-10A-01D-A34X-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	205c962b-96d0-4749-b98d-008e6682bd85	8a7fd11e-d477-4b6e-a23f-e872bce8207d	19	58565040	58565040	C	T	SNP	ZSCAN1	ENST00000282326	human	ensembl	74_37	+1	known	missense	c.848	p.P283L	0.004	NULL	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN1	HGNC	ENSG00000152467	tier1	-	-	37	0	0.00	21	24	53.33
