Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
AFAP1L1	0	genome.wustl.edu	37	5	148686978	148686978	+	Silent	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	5	148686978	148686978	C	T	SNP	AFAP1L1	ENST00000296721	human	ensembl	74_37	+1	known	silent	c.549	p.D183	0.992	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L1	HGNC	ENSG00000157510				82	0	0.00	64	4	5.80
AGPS	0	genome.wustl.edu	37	2	178299090	178299090	+	Missense_Mutation	SNP	A	A	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	2	178299090	178299090	A	C	SNP	AGPS	ENST00000264167	human	ensembl	74_37	+1	known	missense	c.386	p.K129T	0.994	NULL	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2,superfamily_FAD-linked_Oxase-like_C	-	no_errors	AGPS	HGNC	ENSG00000018510	tier1	-	-	102	0	0.00	46	24	34.29
AJAP1	0	genome.wustl.edu	37	1	4772110	4772110	+	Silent	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	4772110	4772110	G	A	SNP	AJAP1	ENST00000378190	human	ensembl	74_37	+1	known	silent	c.180	p.P60	0.079	NULL	NULL	-	no_errors	AJAP1	HGNC	ENSG00000196581	tier1	-	-	62	0	0.00	53	23	30.26
ANO8	0	genome.wustl.edu	37	19	17440779	17440779	+	Missense_Mutation	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	19	17440779	17440779	T	C	SNP	ANO8	ENST00000159087	human	ensembl	74_37	-1	known	missense	c.1318	p.K440E	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO8	HGNC	ENSG00000074855	tier1	-	-	140	0	0.00	88	16	15.38
ARHGEF11	0	genome.wustl.edu	37	1	156926309	156926309	+	Missense_Mutation	SNP	A	A	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	156926309	156926309	A	T	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.1574	p.I525N	1.000	pfam_RGS-like_dom,superfamily_Regulat_G_prot_signal_superfam	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1	-	-	149	0	0.00	104	19	15.32
ATG7	0	genome.wustl.edu	37	3	11382133	11382133	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	11382133	11382133	G	A	SNP	ATG7	ENST00000354449	human	ensembl	74_37	+1	known	missense	c.904	p.V302I	0.998	tigrfam_Atg7	pfam_ThiF_NAD_FAD-bd,superfamily_Molybdenum_cofac_synth_MoeB,tigrfam_Atg7	-	no_errors	ATG7	HGNC	ENSG00000197548	tier1	-	-	46	0	0.00	37	5	11.90
ATP5A1	0	genome.wustl.edu	37	18	43667197	43667197	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	18	43667197	43667197	G	A	SNP	ATP5A1	ENST00000282050	human	ensembl	74_37	-1	known	missense	c.953	p.A318V	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_F1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_F1-cplx_asu	-	no_errors	ATP5A1	HGNC	ENSG00000152234	tier1	-	-	20	0	0.00	38	11	22.45
BRD1	0	genome.wustl.edu	37	22	50187780	50187780	+	Missense_Mutation	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	22	50187780	50187780	T	C	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.2261	p.K754R	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	tier1	-	-	40	0	0.00	42	12	22.22
C2orf49	0	genome.wustl.edu	37	2	105953938	105953939	+	Frame_Shift_Ins	INS	-	-	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	2	105953938	105953939	-	C	INS	C2orf49	ENST00000437250	human	ensembl	74_37	+1	known	frame_shift_ins	c.8_9	p.L4fs	0.881:0.072	NULL	NULL	-	no_errors	C2orf49	HGNC	ENSG00000135974	tier1			8	0	0.00	2	3	60.00
C2orf53	0	genome.wustl.edu	37	2	27361135	27361135	+	Silent	SNP	A	A	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	2	27361135	27361135	A	C	SNP	C2orf53	ENST00000335524	human	ensembl	74_37	-1	known	silent	c.63	p.T21	0.000	NULL	NULL	-	no_errors	C2orf53	HGNC	ENSG00000186143	tier1	-	-	50	0	0.00	36	13	26.53
CAND2	0	genome.wustl.edu	37	3	12858315	12858315	+	Silent	SNP	G	G	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	12858315	12858315	G	T	SNP	CAND2	ENST00000456430	human	ensembl	74_37	+1	known	silent	c.1884	p.L628	1.000	superfamily_ARM-type_fold	pfam_TATA-bd_TIP120,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	CAND2	HGNC	ENSG00000144712	tier1	-	-	143	0	0.00	118	10	7.81
CASKIN2	0	genome.wustl.edu	37	17	73498473	73498473	+	Frame_Shift_Del	DEL	C	C	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	17	73498473	73498473	C	-	DEL	CASKIN2	ENST00000321617	human	ensembl	74_37	-1	known	frame_shift_del	c.2682	p.K896fs	0.012	NULL	pfam_Ankyrin_rpt,pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_SH3_domain,prints_Ankyrin_rpt	-	no_errors	CASKIN2	HGNC	ENSG00000177303	tier1			9	0	0.00	4	2	33.33
CCDC7	0	genome.wustl.edu	37	10	32833351	32833352	+	RNA	DEL	TC	TC	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	10	32833351	32833352	TC	-	DEL	CCDC7	ENST00000471905	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.015	-	-	-	no_errors	CCDC7	HGNC	ENSG00000216937	tier1			43	0	0.00	20	3	13.04
CHDH	0	genome.wustl.edu	37	3	53857457	53857457	+	Silent	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	53857457	53857457	C	T	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	silent	c.579	p.K193	0.792	pfam_GMC_OxRdtase_N,pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391	tier1	-	-	10	0	0.00	8	5	38.46
CHFR	0	genome.wustl.edu	37	12	133438210	133438211	+	Frame_Shift_Ins	INS	-	-	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	12	133438210	133438211	-	C	INS	CHFR	ENST00000266880	human	ensembl	74_37	-1	known	frame_shift_ins	c.630_629	p.G211fs	0.000:0.000	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Znf_RING,pfscan_FHA_dom,pfscan_Znf_RING	-	no_errors	CHFR	HGNC	ENSG00000072609	tier1			32	0	0.00	33	2	5.71
DCLRE1A	0	genome.wustl.edu	37	10	115608961	115608961	+	Missense_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	10	115608961	115608961	T	G	SNP	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	missense	c.1903	p.K635Q	0.986	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	tier1	-	-	135	0	0.00	89	25	21.93
DNAJC13	0	genome.wustl.edu	37	3	132247129	132247129	+	Frame_Shift_Del	DEL	G	G	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	132247129	132247129	G	-	DEL	DNAJC13	ENST00000260818	human	ensembl	74_37	+1	known	frame_shift_del	c.6478	p.V2160fs	1.000	superfamily_ARM-type_fold	pfam_DnaJ_domain,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_domain,pfscan_DnaJ_domain	-	no_errors	DNAJC13	HGNC	ENSG00000138246	tier1			86	0	0.00	66	11	14.29
DOPEY2	0	genome.wustl.edu	37	21	37603428	37603428	+	Silent	SNP	G	G	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	21	37603428	37603428	G	T	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	silent	c.2346	p.L782	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	tier1	-	-	41	0	0.00	33	4	10.81
EHD4	0	genome.wustl.edu	37	15	42193248	42193248	+	Silent	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	15	42193248	42193248	C	T	SNP	EHD4	ENST00000220325	human	ensembl	74_37	-1	known	silent	c.1221	p.T407	0.927	NULL	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD4	HGNC	ENSG00000103966	tier1	-	-	30	0	0.00	24	8	25.00
EYA4	0	genome.wustl.edu	37	6	133777749	133777749	+	Silent	SNP	G	G	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	6	133777749	133777749	G	T	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	silent	c.333	p.T111	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	tier1	-	-	219	0	0.00	159	22	12.15
FANCE	0	genome.wustl.edu	37	6	35423873	35423873	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	6	35423873	35423873	C	T	SNP	FANCE	ENST00000229769	human	ensembl	74_37	+1	known	missense	c.598	p.R200C	0.997	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039	tier1	-	-	31	0	0.00	27	4	12.90
IFT52	0	genome.wustl.edu	37	20	42232877	42232877	+	Missense_Mutation	SNP	T	T	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	20	42232877	42232877	T	A	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	missense	c.392	p.V131D	1.000	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	tier1	-	-	60	0	0.00	53	6	10.17
KAT6B	0	genome.wustl.edu	37	10	76788867	76788867	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	10	76788867	76788867	G	A	SNP	KAT6B	ENST00000287239	human	ensembl	74_37	+1	known	missense	c.4285	p.E1429K	1.000	NULL	pfam_MOZ_SAS,pfam_Znf_PHD-finger,pfam_Histone_H1/H5_H15,superfamily_Acyl_CoA_acyltransferase,superfamily_Znf_FYVE_PHD,smart_Histone_H1/H5_H15,smart_Znf_PHD,pfscan_Znf_PHD-finger	-	no_errors	KAT6B	HGNC	ENSG00000156650	tier1	-	-	63	0	0.00	54	5	8.33
KCNMB1	0	genome.wustl.edu	37	5	169805759	169805759	+	Silent	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	5	169805759	169805759	G	A	SNP	KCNMB1	ENST00000274629	human	ensembl	74_37	-1	known	silent	c.525	p.I175	0.041	pfam_K_chnl_Ca-activ_BK_bsu	pfam_K_chnl_Ca-activ_BK_bsu,prints_K_chnl_Ca-activ_BK_bsu	-	no_errors	KCNMB1	HGNC	ENSG00000145936	tier1	-	-	105	0	0.00	94	13	12.15
KLHL15	0	genome.wustl.edu	37	X	24007016	24007016	+	Silent	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	X	24007016	24007016	T	C	SNP	KLHL15	ENST00000328046	human	ensembl	74_37	-1	known	silent	c.837	p.K279	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL15	HGNC	ENSG00000174010	tier1	-	-	128	0	0.00	97	6	5.77
LGR4	0	genome.wustl.edu	37	11	27405913	27405913	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	11	27405913	27405913	C	T	SNP	LGR4	ENST00000379214	human	ensembl	74_37	-1	known	missense	c.659	p.C220Y	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_7TM,prints_Gphrmn_rcpt_fam,prints_GPCR_Rhodpsn	-	no_errors	LGR4	HGNC	ENSG00000205213	tier1	-	-	117	0	0.00	102	17	14.29
LRRTM3	0	genome.wustl.edu	37	10	68687759	68687759	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	10	68687759	68687759	G	A	SNP	LRRTM3	ENST00000361320	human	ensembl	74_37	+1	known	missense	c.1085	p.G362D	1.000	NULL	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRTM3	HGNC	ENSG00000198739	tier1	rs146764802	-	63	0	0.00	58	10	14.71
MAPK9	0	genome.wustl.edu	37	5	179676123	179676123	+	Missense_Mutation	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	5	179676123	179676123	T	C	SNP	MAPK9	ENST00000452135	human	ensembl	74_37	-1	known	missense	c.466	p.N156D	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_JNK	-	no_errors	MAPK9	HGNC	ENSG00000050748	tier1	-	-	70	0	0.00	51	8	13.56
MCFD2	0	genome.wustl.edu	37	2	47132596	47132596	+	RNA	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	2	47132596	47132596	T	G	SNP	MCFD2	ENST00000470873	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	MCFD2	HGNC	ENSG00000180398	tier1	-	-	124	0	0.00	72	24	24.74
MTMR2	0	genome.wustl.edu	37	11	95591781	95591781	+	Nonsense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	11	95591781	95591781	G	A	SNP	MTMR2	ENST00000346299	human	ensembl	74_37	-1	known	nonsense	c.484	p.R162*	1.000	NULL	pfam_Myotubularin-like_Pase_dom,pfam_GRAM,smart_GRAM,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-sp_Pase	-	no_errors	MTMR2	HGNC	ENSG00000087053	tier1	-	-	133	0	0.00	93	9	8.82
MYH2	0	genome.wustl.edu	37	17	10442657	10442657	+	Silent	SNP	T	T	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	17	10442657	10442657	T	A	SNP	MYH2	ENST00000245503	human	ensembl	74_37	-1	known	silent	c.1281	p.V427	0.971	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	tier1	-	-	209	0	0.00	142	33	18.86
MYOM3	0	genome.wustl.edu	37	1	24416585	24416585	+	Missense_Mutation	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	24416585	24416585	T	C	SNP	MYOM3	ENST00000330966	human	ensembl	74_37	-1	known	missense	c.1459	p.K487E	0.947	NULL	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM3	HGNC	ENSG00000142661	tier1	-	-	53	0	0.00	46	4	8.00
NAV3	0	genome.wustl.edu	37	12	78513022	78513022	+	Missense_Mutation	SNP	A	A	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	12	78513022	78513022	A	C	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.3046	p.T1016P	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	tier1	-	-	184	0	0.00	148	12	7.50
NAV3	0	genome.wustl.edu	37	12	78530998	78530998	+	Missense_Mutation	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	12	78530998	78530998	A	G	SNP	NAV3	ENST00000397909	human	ensembl	74_37	+1	known	missense	c.4483	p.S1495G	1.000	NULL	pfam_CH-domain,pfam_ATPase_AAA_core,superfamily_CH-domain,superfamily_P-loop_NTPase,smart_CH-domain,smart_AAA+_ATPase,pfscan_CH-domain	-	no_errors	NAV3	HGNC	ENSG00000067798	tier1	-	-	81	0	0.00	43	8	15.38
NDUFAF1	0	genome.wustl.edu	37	15	41689014	41689014	+	Missense_Mutation	SNP	A	A	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	15	41689014	41689014	A	C	SNP	NDUFAF1	ENST00000260361	human	ensembl	74_37	-1	known	missense	c.244	p.F82V	1.000	NULL	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	tier1	-	-	233	0	0.00	195	24	10.96
NELL1	0	genome.wustl.edu	37	11	20940835	20940835	+	Silent	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	11	20940835	20940835	A	G	SNP	NELL1	ENST00000357134	human	ensembl	74_37	+1	known	silent	c.714	p.Q238	1.000	NULL	pfam_EGF-like_Ca-bd_dom,pfam_VWF_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_VWC_out,smart_VWF_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_VWF_C	-	no_errors	NELL1	HGNC	ENSG00000165973	tier1	-	-	102	0	0.00	73	7	8.75
NPM1	0	genome.wustl.edu	37	5	170814963	170814963	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	5	170814963	170814963	C	T	SNP	NPM1	ENST00000296930	human	ensembl	74_37	+1	known	missense	c.11	p.S4L	0.998	NULL	superfamily_Nucleoplasmin_core_dom	-	no_errors	NPM1	HGNC	ENSG00000181163				28	0	0.00	23	3	11.54
NR2F2	0	genome.wustl.edu	37	15	96880682	96880682	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	15	96880682	96880682	G	A	SNP	NR2F2	ENST00000394166	human	ensembl	74_37	+1	known	missense	c.1076	p.R359K	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_COUP_TF,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4	-	no_errors	NR2F2	HGNC	ENSG00000185551	tier1	-	-	156	0	0.00	121	19	13.57
OR13F1	0	genome.wustl.edu	37	9	107266644	107266644	+	Missense_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	9	107266644	107266644	T	G	SNP	OR13F1	ENST00000334726	human	ensembl	74_37	+1	known	missense	c.101	p.M34R	1.000	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13F1	HGNC	ENSG00000186881	tier1	-	-	129	0	0.00	71	15	17.44
OR2AK2	0	genome.wustl.edu	37	1	248129082	248129082	+	Missense_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	248129082	248129082	T	G	SNP	OR2AK2	ENST00000366480	human	ensembl	74_37	+1	known	missense	c.449	p.L150R	0.010	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2AK2	HGNC	ENSG00000187080	tier1	-	-	194	0	0.00	142	36	20.22
PACRG	0	genome.wustl.edu	37	6	163510296	163510296	+	Missense_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	6	163510296	163510296	T	G	SNP	PACRG	ENST00000337019	human	ensembl	74_37	+1	known	missense	c.469	p.L157V	1.000	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	pfam_Parkin_co-regulated_protein,superfamily_ARM-type_fold	-	no_errors	PACRG	HGNC	ENSG00000112530	tier1	-	-	118	0	0.00	92	10	9.80
PCDH9	0	genome.wustl.edu	37	13	66878787	66878787	+	Nonstop_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	13	66878787	66878787	T	G	SNP	PCDH9	ENST00000377865	human	ensembl	74_37	-1	known	nonstop	c.3714	p.*1238Y	1.000	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	tier1	-	-	70	0	0.00	40	5	11.11
PDE9A	0	genome.wustl.edu	37	21	44195538	44195538	+	RNA	DEL	A	A	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	21	44195538	44195538	A	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191	tier1			15	0	0.00	8	3	27.27
PDZRN3	0	genome.wustl.edu	37	3	73433149	73433149	+	Silent	SNP	G	G	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	73433149	73433149	G	T	SNP	PDZRN3	ENST00000263666	human	ensembl	74_37	-1	known	silent	c.2568	p.G856	0.077	NULL	pfam_PDZ,pfam_Znf_C3HC4_RING-type,superfamily_PDZ,superfamily_TRAF-like,smart_Znf_RING,smart_PDZ,pfscan_PDZ,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	PDZRN3	HGNC	ENSG00000121440	tier1	-	-	67	0	0.00	59	8	11.94
PEX5L	0	genome.wustl.edu	37	3	179689385	179689386	+	Frame_Shift_Ins	INS	-	-	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	179689385	179689386	-	T	INS	PEX5L	ENST00000467460	human	ensembl	74_37	-1	known	frame_shift_ins	c.90_89	p.Q31fs	0.999:1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	PEX5L	HGNC	ENSG00000114757	tier1			45	0	0.00	29	2	6.45
PRKAB1	0	genome.wustl.edu	37	12	120110200	120110201	+	Frame_Shift_Ins	INS	-	-	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	12	120110200	120110201	0	G	INS	PRKAB1	ENST00000229328	human	ensembl	74_37	+1	known	frame_shift_ins	c.254_255	p.G88fs	1.000:0.166	superfamily_Ig_E-set	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB1	HGNC	ENSG00000111725				188	0	0.00	167	11	6.18
PSG10P	0	genome.wustl.edu	37	19	43358346	43358346	+	RNA	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	19	43358346	43358346	A	G	SNP	PSG10P	ENST00000597171	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSG10P	HGNC	ENSG00000248257	tier1	-	-	273	0	0.00	197	86	30.39
PTPN3	0	genome.wustl.edu	37	9	112182842	112182842	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	9	112182842	112182842	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	missense	c.1175	p.R392H	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159	tier1	-	-	70	0	0.00	66	5	7.04
RAB3D	0	genome.wustl.edu	37	19	11447948	11447948	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	19	11447948	11447948	G	A	SNP	RAB3D	ENST00000222120	human	ensembl	74_37	-1	known	missense	c.128	p.A43V	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB3D	HGNC	ENSG00000105514	tier1	rs112584280	-	346	0	0.00	208	38	15.45
RHOA	0	genome.wustl.edu	37	3	49412894	49412895	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	3	49412894	49412895	CA	0	DEL	RHOA	ENST00000418115	human	ensembl	74_37	-1	known	frame_shift_del	c.129_128	p.V43fs	1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RHOA	HGNC	ENSG00000067560				172	0	0.00	124	9	6.77
RSC1A1	0	genome.wustl.edu	37	1	15988209	15988209	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	15988209	15988209	C	T	SNP	RSC1A1	ENST00000345034	human	ensembl	74_37	+1	known	missense	c.1846	p.P616S	1.000	NULL	superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	RSC1A1	HGNC	ENSG00000215695				45	0	0.00	54	4	6.90
RTKN	0	genome.wustl.edu	37	2	74656040	74656040	+	Missense_Mutation	SNP	G	G	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	2	74656040	74656040	G	T	SNP	RTKN	ENST00000272430	human	ensembl	74_37	-1	known	missense	c.785	p.T262N	1.000	NULL	pfam_Pleckstrin_homology,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,smart_HR1_rho-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	RTKN	HGNC	ENSG00000114993	tier1	-	-	37	0	0.00	23	4	14.81
SAFB2	0	genome.wustl.edu	37	19	5587265	5587265	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	19	5587265	5587265	G	A	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	missense	c.2851	p.R951C	1.000	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	tier1	-	-	36	0	0.00	17	6	26.09
SCAF8	0	genome.wustl.edu	37	6	155153260	155153260	+	Silent	SNP	A	A	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	6	155153260	155153260	A	T	SNP	SCAF8	ENST00000367186	human	ensembl	74_37	+1	known	silent	c.2745	p.L915	0.357	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_CID_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079	tier1	-	-	135	0	0.00	86	12	12.24
SEMA3D	0	genome.wustl.edu	37	7	84628742	84628742	+	RNA	SNP	A	A	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	7	84628742	84628742	A	C	SNP	SEMA3D	ENST00000484038	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.301	-	-	-	no_errors	SEMA3D	HGNC	ENSG00000153993	tier1	-	-	49	0	0.00	46	11	19.30
SHROOM4	0	genome.wustl.edu	37	X	50377313	50377313	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	X	50377313	50377313	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	missense	c.1760	p.R587H	0.991	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	tier1	-	-	37	0	0.00	23	10	30.30
SLFN13	0	genome.wustl.edu	37	17	33771769	33771769	+	Missense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	17	33771769	33771769	G	A	SNP	SLFN13	ENST00000285013	human	ensembl	74_37	-1	known	missense	c.931	p.L311F	0.062	pfam_ATPase_AAA-4	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN13	HGNC	ENSG00000154760	tier1	-	-	159	0	0.00	124	9	6.77
SURF2	0	genome.wustl.edu	37	9	136226880	136226882	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	9	136226880	136226882	GGA	-	DEL	SURF2	ENST00000371964	human	ensembl	74_37	+1	known	in_frame_del	c.392_394	p.R135in_frame_del	0.001:0.001:0.000	pfam_Surf2	pfam_Surf2	-	no_errors	SURF2	HGNC	ENSG00000148291	tier1			34	0	0.00	15	3	16.67
SYNPO2L	0	genome.wustl.edu	37	10	75408254	75408254	+	Nonsense_Mutation	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	10	75408254	75408254	G	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	74_37	-1	known	nonsense	c.1156	p.R386*	0.001	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	tier1	-	-	80	0	0.00	70	15	17.65
TCEB3B	0	genome.wustl.edu	37	18	44559962	44559962	+	Silent	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	18	44559962	44559962	A	G	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	silent	c.1674	p.V558	0.087	pfam_RNA_pol_II_trans_fac_SIII_A	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	tier1	-	-	55	0	0.00	53	11	17.19
TMCO1	0	genome.wustl.edu	37	1	165738072	165738072	+	Missense_Mutation	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	1	165738072	165738072	A	G	SNP	TMCO1	ENST00000367881	human	ensembl	74_37	-1	known	missense	c.70	p.Y24H	0.000	NULL	pfam_DUF106_TM	-	no_errors	TMCO1	HGNC	ENSG00000143183				21	0	0.00	15	2	11.76
TP53	0	genome.wustl.edu	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	17	7578555	7578555	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510				29	0	0.00	31	9	22.50
TUBBP5	0	genome.wustl.edu	37	9	141070981	141070981	+	RNA	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	9	141070981	141070981	C	T	SNP	TUBBP5	ENST00000290377	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TUBBP5	HGNC	ENSG00000159247	tier1	rs28587432	-	26	0	0.00	21	4	16.00
USP47	0	genome.wustl.edu	37	11	11906086	11906086	+	Missense_Mutation	SNP	C	C	T			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	11	11906086	11906086	C	T	SNP	USP47	ENST00000399455	human	ensembl	74_37	+1	known	missense	c.376	p.H126Y	1.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP47	HGNC	ENSG00000170242	tier1	-	-	134	0	0.00	101	6	5.61
VPS13B	0	genome.wustl.edu	37	8	100479852	100479852	+	Missense_Mutation	SNP	C	C	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	8	100479852	100479852	C	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.3656	p.S1219C	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549				70	0	0.00	58	13	18.31
WHSC1	0	genome.wustl.edu	37	4	1940249	1940249	+	Silent	SNP	G	G	A			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	4	1940249	1940249	G	A	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	silent	c.1746	p.K582	1.000	NULL	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685	tier1	-	-	43	0	0.00	25	6	19.35
ZKSCAN3	0	genome.wustl.edu	37	6	28333491	28333491	+	Missense_Mutation	SNP	A	A	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	6	28333491	28333491	A	G	SNP	ZKSCAN3	ENST00000252211	human	ensembl	74_37	+1	known	missense	c.1046	p.K349R	0.994	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN3	HGNC	ENSG00000189298	tier1	-	-	109	0	0.00	66	10	13.16
ZNF470	0	genome.wustl.edu	37	19	57089069	57089069	+	Silent	SNP	T	T	C			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	19	57089069	57089069	T	C	SNP	ZNF470	ENST00000330619	human	ensembl	74_37	+1	known	silent	c.1272	p.P424	0.289	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF470	HGNC	ENSG00000197016	tier1	-	-	73	0	0.00	49	16	24.62
ZNF521	0	genome.wustl.edu	37	18	22804445	22804445	+	Missense_Mutation	SNP	T	T	G			TCGA-VQ-A8PM-01A-21D-A410-08	TCGA-VQ-A8PM-10A-01D-A413-08	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	29005798-21a7-455a-9a4e-343152592665	c139dc39-0fab-461d-b10e-5add9be7f55a	18	22804445	22804445	T	G	SNP	ZNF521	ENST00000361524	human	ensembl	74_37	-1	known	missense	c.3437	p.K1146T	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF521	HGNC	ENSG00000198795	tier1	-	-	67	0	0.00	45	12	21.05
