Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SLC5A11	115584	broad.mit.edu	37	16	24902200	24902200	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:24902200G>A	ENST00000347898.3	+	9	1297	c.675G>A	c.(673-675)gcG>gcA	p.A225A	SLC5A11_ENST00000545376.1_Silent_p.A155A|SLC5A11_ENST00000449109.2_Intron|SLC5A11_ENST00000568579.1_Silent_p.A155A|SLC5A11_ENST00000424767.2_Silent_p.A190A|SLC5A11_ENST00000569071.1_Intron|SLC5A11_ENST00000539472.1_Silent_p.A161A|SLC5A11_ENST00000567758.1_Silent_p.A190A|SLC5A11_ENST00000565769.1_Silent_p.A161A	NM_052944.3	NP_443176.2	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/inositol cotransporter), member 11	225					apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(6)|lung(30)|ovary(2)|prostate(2)|urinary_tract(1)	49				GBM - Glioblastoma multiforme(48;0.0365)		GTTTTGCCGCGGTTGGTGGGA	0.542000													98	159					0	0	1	0	0
USP41	373856	broad.mit.edu	37	22	20729838	20729838	+	Silent	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr22:20729838C>T	ENST00000454608.2	-	6	341	c.342G>A	c.(340-342)cgG>cgA	p.R114R						ubiquitin specific peptidase 41											endometrium(1)|kidney(1)|lung(2)|skin(1)	5						CTGCTTTCTGCCGGCTGTCCT	0.597000													3	32					0	0	1	0	0
ALS2CR12	130540	broad.mit.edu	37	2	202216040	202216040	+	Missense_Mutation	SNP	G	G	A	rs143899839		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr2:202216040G>A	ENST00000405148.2	-	2	531	c.88C>T	c.(88-90)Cgc>Tgc	p.R30C	ALS2CR12_ENST00000448967.1_5'UTR|ALS2CR12_ENST00000392257.3_Missense_Mutation_p.R30C|ALS2CR12_ENST00000286190.5_Missense_Mutation_p.R30C|ALS2CR12_ENST00000439709.1_Missense_Mutation_p.R30C	NM_139163.2	NP_631902.2	Q96Q35	AL2SB_HUMAN	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12	30					regulation of GTPase activity		protein binding			NS(1)|breast(5)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(6)|ovary(2)	21						GAGTTCTTGCGTGGTAGTTGA	0.517000													11	36					0	0	1	0	0
ZNF710	374655	broad.mit.edu	37	15	90611415	90611415	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr15:90611415G>A	ENST00000268154.4	+	2	1297	c.1046G>A	c.(1045-1047)cGg>cAg	p.R349Q		NM_198526.2	NP_940928.2	Q8N1W2	ZN710_HUMAN	zinc finger protein 710	349					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(2)|endometrium(2)|kidney(2)|large_intestine(4)|lung(1)|ovary(2)|prostate(1)|stomach(1)|urinary_tract(3)	19	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.00769)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.129)			CAGGGCACCCGGCCCCACAAG	0.642000													71	35					0	0	1	0	0
LCA5	167691	broad.mit.edu	37	6	80197346	80197346	+	Missense_Mutation	SNP	G	G	A	rs139048294		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr6:80197346G>A	ENST00000392959.1	-	9	2080	c.1469C>T	c.(1468-1470)cCa>cTa	p.P490L	LCA5_ENST00000369846.4_Missense_Mutation_p.P490L	NM_181714.3	NP_859065.2	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	490					protein transport	cilium axoneme|microtubule basal body	protein binding			haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(11)|lung(15)|prostate(2)|skin(1)	32		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		AGGTAACAATGGCAAAACAGG	0.383000													66	108					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24537588	24537588	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr5:24537588C>T	ENST00000264463.4	-	3	934	c.427G>A	c.(427-429)Gag>Aag	p.E143K		NM_006727.3	NP_006718.2	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 (T2-cadherin)	143	Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(8)|central_nervous_system(2)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(29)|lung(111)|ovary(6)|pancreas(6)|skin(4)|stomach(2)|upper_aerodigestive_tract(4)	185				STAD - Stomach adenocarcinoma(35;0.0556)		AACTCTGACTCTGGCTCTACT	0.423000										HNSCC(23;0.051)			62	109					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73593703	73593703	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr15:73593703G>A	ENST00000339362.5	+	29	4654	c.4207G>A	c.(4207-4209)Ggg>Agg	p.G1403R	NEO1_ENST00000560262.1_Missense_Mutation_p.G1350R|NEO1_ENST00000261908.6_Missense_Mutation_p.G1403R|NEO1_ENST00000558964.1_Missense_Mutation_p.G1392R			Q92859	NEO1_HUMAN	neogenin 1	1403					axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				NS(1)|breast(2)|central_nervous_system(1)|cervix(2)|endometrium(5)|kidney(3)|large_intestine(9)|lung(26)|pancreas(2)|prostate(1)|skin(3)|urinary_tract(2)	57						AGCCTCCATCGGGACTCTAGG	0.557000													3	36					0	0	1	0	0
SKIL	6498	broad.mit.edu	37	3	170099114	170099114	+	Nonsense_Mutation	SNP	C	C	G	rs140174204	by1000genomes	TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:170099114C>G	ENST00000458537.3	+	2	1890	c.1181C>G	c.(1180-1182)tCa>tGa	p.S394*	SKIL_ENST00000259119.4_Nonsense_Mutation_p.S394*|SKIL_ENST00000426052.2_Nonsense_Mutation_p.S374*|SKIL_ENST00000413427.2_Nonsense_Mutation_p.S394*	NM_001145097.2|NM_001248008.1|NM_005414.4	NP_001138569.1|NP_001234937.1|NP_005405.2	P12757	SKIL_HUMAN	SKI-like oncogene	394					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			cervix(1)|endometrium(2)|kidney(2)|large_intestine(1)|lung(12)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	25	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			CAGACACATTCATTTTTACAC	0.383000													33	56					0	0	1	0	0
YWHAE	7531	broad.mit.edu	37	17	1268269	1268269	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr17:1268269T>A	ENST00000264335.8	-	2	415	c.148A>T	c.(148-150)Aag>Tag	p.K50*	YWHAE_ENST00000573026.1_Intron|YWHAE_ENST00000571732.1_Nonsense_Mutation_p.K28*|YWHAE_ENST00000575977.1_Nonsense_Mutation_p.K50*	NM_006761.4	NP_006752.1	P62258	1433E_HUMAN	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	50					apoptosis|G2/M transition of mitotic cell cycle|induction of apoptosis by extracellular signals|interspecies interaction between organisms|intracellular signal transduction|nerve growth factor receptor signaling pathway	cytosol|melanosome	histone deacetylase binding|phosphoserine binding			kidney(2)|large_intestine(4)|lung(5)|ovary(2)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(18;0.203)	UCEC - Uterine corpus endometrioid carcinoma (25;0.0887)		ATCACATTCTTATATGCAACA	0.413000			T	"""FAM22a, FAM22B"""	edometrial stromal sarcoma		Miller-Dieker lissencephaly syndrome						10	153					0	0	1	0	0
NWD1	284434	broad.mit.edu	37	19	16860863	16860863	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:16860863G>A	ENST00000524140.2	+	6	1828	c.1410G>A	c.(1408-1410)tcG>tcA	p.S470S	NWD1_ENST00000523826.1_Silent_p.S264S|NWD1_ENST00000379808.3_Silent_p.S470S|NWD1_ENST00000552788.1_Silent_p.S470S|NWD1_ENST00000339803.6_Silent_p.S335S|NWD1_ENST00000549814.1_Silent_p.S470S	NM_001007525.3	NP_001007526.3	Q149M9	NWD1_HUMAN	NACHT and WD repeat domain containing 1	470	NACHT.						ATP binding	p.S335S(1)|p.S470S(1)		NS(3)|breast(2)|cervix(1)|endometrium(8)|large_intestine(17)|lung(18)|ovary(2)|pancreas(3)|prostate(5)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	67						CAGCTTGCTCGGGGGCACTGG	0.632000													51	105					0	0	1	0	0
SUPT16H	11198	broad.mit.edu	37	14	21829276	21829276	+	Silent	SNP	T	T	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr14:21829276T>C	ENST00000216297.2	-	16	2228	c.1890A>G	c.(1888-1890)aaA>aaG	p.K630K		NM_007192.3	NP_009123.1	Q9Y5B9	SP16H_HUMAN	suppressor of Ty 16 homolog (S. cerevisiae)	630					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding			breast(3)|endometrium(4)|kidney(1)|large_intestine(9)|lung(6)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	27	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		TTTTATAACGTTTCTGTACTT	0.408000													19	113					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021787	132021787	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr2:132021787C>T	ENST00000356920.5	+	15	2853	c.2759C>T	c.(2758-2760)gCc>gTc	p.A920V	POTEE_ENST00000358087.5_3'UTR|PLEKHB2_ENST00000303908.3_Intron|PLEKHB2_ENST00000404460.1_Intron	NM_001083538.1	NP_001077007.1	Q6S8J3	POTEE_HUMAN	POTE ankyrin domain family, member E	920	Actin-like.						ATP binding										TGCTATGTTGCCCTGGACTTC	0.587000													13	513					0	0	1	0	0
CST6	1474	broad.mit.edu	37	11	65780370	65780370	+	Missense_Mutation	SNP	G	G	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr11:65780370G>T	ENST00000312134.2	+	2	518	c.314G>T	c.(313-315)gGa>gTa	p.G105V		NM_001323.3	NP_001314.1	Q15828	CYTM_HUMAN	cystatin E/M	105					anatomical structure morphogenesis	extracellular region	cysteine-type endopeptidase inhibitor activity			large_intestine(1)|lung(1)|ovary(1)	3						AGGGTCACTGGAGACCACGTC	0.657000													17	30					1.5739e-10	1.6911e-10	1	1	0
RNPS1	10921	broad.mit.edu	37	16	2304013	2304013	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:2304013C>T	ENST00000567147.1	-	6	673	c.659G>A	c.(658-660)cGg>cAg	p.R220Q	RNPS1_ENST00000301730.8_Silent_p.P290P|RNPS1_ENST00000566397.1_Silent_p.P113P|RNPS1_ENST00000397086.2_Silent_p.P290P|RNPS1_ENST00000568631.1_Silent_p.P290P|RNPS1_ENST00000561718.1_Silent_p.P113P|RNPS1_ENST00000569598.2_Silent_p.P196P|RNPS1_ENST00000565678.1_Silent_p.P290P|RNPS1_ENST00000566458.1_Silent_p.P267P|AC009065.1_ENST00000454671.1_Silent_p.P92P|RNPS1_ENST00000320225.5_Silent_p.P290P			Q15287	RNPS1_HUMAN	RNA binding protein S1, serine-rich domain	232	Necessary for interaction with PNN and exon-skipping.|Necessary for interaction with the cleaved p110 isoform of CDC2L1.|RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|termination of RNA polymerase II transcription	cytosol|nuclear speck	mRNA 3'-UTR binding|nucleotide binding|protein binding			endometrium(1)|large_intestine(1)|lung(4)|ovary(2)|urinary_tract(1)	9						GGCGGCGGCCCGGGGACCGTG	0.657000													4	8					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50939408	50939408	+	Silent	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:50939408C>T	ENST00000357701.5	+	4	387	c.336C>T	c.(334-336)tcC>tcT	p.S112S		NM_004533.3	NP_004524.3	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	112	Ig-like C2-type 1.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CCCACAACTCCGCCAGCAATG	0.607000													3	10					0	0	1	0	0
AQP5	362	broad.mit.edu	37	12	50355840	50355840	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr12:50355840G>A	ENST00000293599.6	+	1	188	c.40G>A	c.(40-42)Gtg>Atg	p.V14M	RP11-469H8.6_ENST00000552379.1_RNA|RP11-469H8.6_ENST00000550530.1_RNA|RP11-469H8.6_ENST00000550214.1_RNA	NM_001651.2	NP_001642.1	P55064	AQP5_HUMAN	aquaporin 5	14					carbon dioxide transport|excretion|odontogenesis|pancreatic juice secretion	apical plasma membrane|integral to plasma membrane	protein binding|water channel activity			large_intestine(1)|lung(3)	4						CCTCAAGGCCGTGTTCGCAGA	0.697000													19	40					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124382176	124382176	+	Silent	SNP	A	A	G	rs148244463		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:124382176A>G	ENST00000287394.5	-	7	923	c.816T>C	c.(814-816)gaT>gaC	p.D272D	ATAD2_ENST00000521903.1_5'UTR	NM_014109.3	NP_054828.2	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	272	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(12)|lung(16)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	48	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			catcatcatcatcatcatcgt	0.363000													8	29					0	0	1	0	0
LEPR	3953	broad.mit.edu	37	1	66075760	66075760	+	Missense_Mutation	SNP	C	C	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:66075760C>A	ENST00000349533.6	+	13	2068	c.1883C>A	c.(1882-1884)cCa>cAa	p.P628Q	LEPR_ENST00000371058.1_Missense_Mutation_p.P628Q|LEPR_ENST00000371060.3_Missense_Mutation_p.P628Q|LEPR_ENST00000462765.1_3'UTR|LEPR_ENST00000371059.3_Missense_Mutation_p.P628Q|LEPR_ENST00000344610.8_Missense_Mutation_p.P628Q|LEPR_ENST00000406510.3_Intron	NM_002303.5	NP_002294.2	P48357	LEPR_HUMAN	leptin receptor	628	Fibronectin type-III 2.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			breast(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(7)|lung(22)|skin(2)	36				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		TGGAGCAATCCAGCCTACACA	0.423000													60	71					4.88506e-25	5.48212e-25	1	1	0
YWHAE	7531	broad.mit.edu	37	17	1268270	1268270	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr17:1268270A>T	ENST00000264335.8	-	2	414	c.147T>A	c.(145-147)taT>taA	p.Y49*	YWHAE_ENST00000573026.1_Intron|YWHAE_ENST00000571732.1_Nonsense_Mutation_p.Y27*|YWHAE_ENST00000575977.1_Nonsense_Mutation_p.Y49*	NM_006761.4	NP_006752.1	P62258	1433E_HUMAN	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	49					apoptosis|G2/M transition of mitotic cell cycle|induction of apoptosis by extracellular signals|interspecies interaction between organisms|intracellular signal transduction|nerve growth factor receptor signaling pathway	cytosol|melanosome	histone deacetylase binding|phosphoserine binding			kidney(2)|large_intestine(4)|lung(5)|ovary(2)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(18;0.203)	UCEC - Uterine corpus endometrioid carcinoma (25;0.0887)		TCACATTCTTATATGCAACAG	0.408000			T	"""FAM22a, FAM22B"""	edometrial stromal sarcoma		Miller-Dieker lissencephaly syndrome						10	155					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19745888	19745888	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:19745888G>A	ENST00000203556.4	-	16	1832	c.1695C>T	c.(1693-1695)ccC>ccT	p.P565P	GMIP_ENST00000587238.1_Silent_p.P539P|GMIP_ENST00000586269.1_5'UTR|GMIP_ENST00000445806.2_Silent_p.P536P	NM_016573.2	NP_057657.2	Q9P107	GMIP_HUMAN	GEM interacting protein	565	Rho-GAP.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			breast(1)|endometrium(6)|kidney(1)|large_intestine(2)|lung(9)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	24						TGACCACAAAGGGTACCTCCT	0.597000													37	80					0	0	1	0	0
UNC5D	137970	broad.mit.edu	37	8	35608269	35608269	+	Missense_Mutation	SNP	A	A	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:35608269A>G	ENST00000287272.2	+	12	1918	c.1898A>G	c.(1897-1899)aAc>aGc	p.N633S	UNC5D_ENST00000404895.2_Missense_Mutation_p.N702S|UNC5D_ENST00000420357.1_Missense_Mutation_p.N635S|UNC5D_ENST00000453357.2_Missense_Mutation_p.N697S|UNC5D_ENST00000449677.1_Missense_Mutation_p.N278S|UNC5D_ENST00000416672.1_Missense_Mutation_p.N707S			Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D (C. elegans)	702	ZU5.				apoptosis|axon guidance	integral to membrane	receptor activity			NS(2)|breast(7)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(4)|kidney(2)|large_intestine(14)|lung(56)|ovary(3)|pancreas(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(6)|urinary_tract(2)	112				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		ATGTCCTGTAACTCCCTGGAT	0.463000													66	114					0	0	1	0	0
TBC1D31	93594	broad.mit.edu	37	8	124096542	124096542	+	Missense_Mutation	SNP	A	A	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:124096542A>G	ENST00000287380.1	+	4	571	c.481A>G	c.(481-483)Aga>Gga	p.R161G	TBC1D31_ENST00000378080.2_Missense_Mutation_p.R56G|TBC1D31_ENST00000522420.1_Missense_Mutation_p.R56G|TBC1D31_ENST00000521676.1_Missense_Mutation_p.R56G|TBC1D31_ENST00000327098.5_Missense_Mutation_p.R161G|TBC1D31_ENST00000309336.3_Missense_Mutation_p.R161G	NM_145647.3	NP_663622.2			TBC1 domain family, member 31																		TCAGAGAAAAAGAAAGCTGAA	0.433000													4	219					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738758	138738758	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:138738758G>A	ENST00000329447.5	-	1	1010	c.746C>T	c.(745-747)cCg>cTg	p.P249L	MRPS22_ENST00000495075.1_Intron	NM_001013650.2	NP_001013672.1	Q6ZRT6	PR23B_HUMAN	proline rich 23B	249	Pro-rich.									NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|large_intestine(3)|lung(16)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	29						TTCCGGGAGCGGCGAGCGCGC	0.672000													4	83					0	0	1	0	0
USP13	8975	broad.mit.edu	37	3	179462957	179462957	+	Missense_Mutation	SNP	T	T	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:179462957T>C	ENST00000263966.3	+	13	2132	c.1661T>C	c.(1660-1662)gTt>gCt	p.V554A	USP13_ENST00000482333.1_Intron|USP13_ENST00000496897.1_Missense_Mutation_p.V489A	NM_003940.2	NP_003931.2	Q92995	UBP13_HUMAN	ubiquitin specific peptidase 13 (isopeptidase T-3)	554					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(8)|lung(20)|ovary(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(3)	46	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			CCAGAAAATGTTGATGATTTC	0.512000													31	58					0	0	1	0	0
TTC27	55622	broad.mit.edu	37	2	33007733	33007733	+	Missense_Mutation	SNP	G	G	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr2:33007733G>T	ENST00000317907.4	+	15	2051	c.1820G>T	c.(1819-1821)cGa>cTa	p.R607L		NM_001193509.1|NM_017735.4	NP_001180438.1|NP_060205.3	Q6P3X3	TTC27_HUMAN	tetratricopeptide repeat domain 27	607							protein binding			breast(1)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(3)|kidney(1)|large_intestine(9)|lung(14)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	38						TCCTATATCCGATTAAAACAA	0.294000													17	20					5.35267e-07	5.5734e-07	1	1	0
DIAPH2	1730	broad.mit.edu	37	X	96354743	96354743	+	Missense_Mutation	SNP	G	G	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chrX:96354743G>C	ENST00000324765.8	+	20	2645	c.2298G>C	c.(2296-2298)gaG>gaC	p.E766D	DIAPH2_ENST00000373061.3_Missense_Mutation_p.E766D|DIAPH2_ENST00000355827.4_Missense_Mutation_p.E766D|DIAPH2_ENST00000373054.4_Missense_Mutation_p.E762D|DIAPH2_ENST00000373049.4_Missense_Mutation_p.E766D			O60879	DIAP2_HUMAN	diaphanous-related formin 2	766	FH2.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			breast(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(13)|lung(15)|ovary(4)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	51						AATTAGCAGAGCTTAAGAATG	0.358000													22	4					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187539564	187539564	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr4:187539564G>A	ENST00000441802.2	-	10	8385	c.8176C>T	c.(8176-8178)Cga>Tga	p.R2726*		NM_005245.3	NP_005236.2	Q14517	FAT1_HUMAN	FAT atypical cadherin 1	2726	Cadherin 25.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding	p.R2729R(1)|p.R2726R(1)		NS(1)|breast(3)|central_nervous_system(3)|endometrium(38)|haematopoietic_and_lymphoid_tissue(2)|kidney(12)|large_intestine(33)|lung(88)|ovary(13)|pancreas(2)|prostate(16)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	228						TGTTCTGCTCGGATGAGATCT	0.453000										HNSCC(5;0.00058)			56	101					0	0	1	0	0
MAGT1	84061	broad.mit.edu	37	X	77112890	77112890	+	Silent	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chrX:77112890C>T	ENST00000358075.6	-	4	677	c.591G>A	c.(589-591)caG>caA	p.Q197Q		NM_032121.5	NP_115497.4	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	165					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				cervix(1)|kidney(2)|large_intestine(3)|lung(9)|prostate(1)|upper_aerodigestive_tract(1)	17						ACCGGGCAATCTGCTCAGCTG	0.463000													75	19					0	0	1	0	0
TMCO3	55002	broad.mit.edu	37	13	114202741	114202741	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr13:114202741C>T	ENST00000434316.2	+	12	2253	c.1894C>T	c.(1894-1896)Cga>Tga	p.R632*	TMCO3_ENST00000375391.1_Intron	NM_017905.4	NP_060375.4	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	632						integral to membrane	solute:hydrogen antiporter activity			NS(1)|endometrium(4)|large_intestine(9)|liver(1)|lung(8)|prostate(1)|stomach(1)	25	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			GAGCCGGGCGCGAAGAGCGGG	0.652000													49	77					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124382194	124382194	+	Missense_Mutation	SNP	A	A	T	rs140021846	byFrequency	TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:124382194A>T	ENST00000287394.5	-	7	905	c.798T>A	c.(796-798)gaT>gaA	p.D266E	ATAD2_ENST00000521903.1_5'UTR	NM_014109.3	NP_054828.2	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	266	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(12)|lung(16)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	48	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			cgtcatcatcatcatcatctt	0.368000													4	42					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245582982	245582982	+	Silent	SNP	G	G	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:245582982G>T	ENST00000407071.2	+	4	1541	c.1101G>T	c.(1099-1101)tcG>tcT	p.S367S		NM_018012.3	NP_060482.2	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	367					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(4)|lung(21)|ovary(4)|prostate(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	51	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			TCCCAGCCTCGCAGGGCTCCT	0.587000													34	94					1.36615e-20	1.51627e-20	1	1	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr10:51093329C>T	ENST00000402038.3	-	4	294	c.295G>A	c.(295-297)Gca>Aca	p.A99T		NM_003631.2	NP_003622.2	Q86W56	PARG_HUMAN	poly (ADP-ribose) glycohydrolase	584					carbohydrate metabolic process	nucleus	poly(ADP-ribose) glycohydrolase activity	p.A584T(1)		endometrium(5)|kidney(2)|lung(1)|ovary(2)	10				Epithelial(53;0.213)		TGAGCTTCTGCTTCTTCAAGT	0.318000													4	57					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39026668	39026668	+	Missense_Mutation	SNP	A	A	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:39026668A>C	ENST00000355481.4	+	81	11664	c.11533A>C	c.(11533-11535)Aac>Cac	p.N3845H	AC067969.2_ENST00000595853.1_RNA|RYR1_ENST00000360985.3_Missense_Mutation_p.N3850H|RYR1_ENST00000359596.3_Missense_Mutation_p.N3850H	NM_000540.2|NM_001042723.1	NP_000531.2|NP_001036188.1	P21817	RYR1_HUMAN	ryanodine receptor 1 (skeletal)	3850					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			NS(4)|autonomic_ganglia(2)|breast(3)|central_nervous_system(5)|endometrium(26)|haematopoietic_and_lymphoid_tissue(3)|kidney(34)|large_intestine(42)|liver(1)|lung(106)|ovary(11)|pancreas(5)|prostate(9)|skin(12)|stomach(11)|upper_aerodigestive_tract(4)|urinary_tract(7)	285	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	TGAGAGACAGAACAAGGCCGA	0.577000													8	15					0	0	1	0	0
ZMYM3	9203	broad.mit.edu	37	X	70471085	70471085	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chrX:70471085C>A	ENST00000373998.1	-	4	1418	c.721G>T	c.(721-723)Gag>Tag	p.E241*	ZMYM3_ENST00000373978.1_Nonsense_Mutation_p.E243*|ZMYM3_ENST00000373984.3_Nonsense_Mutation_p.E243*|ZMYM3_ENST00000314425.5_Nonsense_Mutation_p.E241*|ZMYM3_ENST00000373981.1_Nonsense_Mutation_p.E241*|ZMYM3_ENST00000373988.1_Nonsense_Mutation_p.E243*|ZMYM3_ENST00000373982.1_Nonsense_Mutation_p.E243*|ZMYM3_ENST00000353904.2_Nonsense_Mutation_p.E241*|ZMYM3_ENST00000489332.1_5'UTR	NM_001171162.1	NP_001164633.1	Q14202	ZMYM3_HUMAN	zinc finger, MYM-type 3	241					multicellular organismal development	nucleus	DNA binding|zinc ion binding			breast(1)|central_nervous_system(7)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(12)|lung(17)|ovary(1)|prostate(9)|upper_aerodigestive_tract(1)|urinary_tract(1)	64	Renal(35;0.156)					CTAACGCGCTCGCTTCTCTTC	0.527000													32	8					1.99505e-19	2.19022e-19	1	1	0
HELZ2	85441	broad.mit.edu	37	20	62200824	62200824	+	Silent	SNP	G	G	A	rs143216041		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr20:62200824G>A	ENST00000467148.1	-	4	834	c.765C>T	c.(763-765)ttC>ttT	p.F255F		NM_001037335.2	NP_001032412.2			helicase with zinc finger 2, transcriptional coactivator																		GGCCAAAGTCGAAGACCACCC	0.677000													22	30					0	0	1	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56807790	56807790	+	Missense_Mutation	SNP	G	G	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:56807790G>C	ENST00000413728.2	-	2	712	c.169C>G	c.(169-171)Ctc>Gtc	p.L57V	ARHGEF3_ENST00000496106.1_Missense_Mutation_p.L57V|ARHGEF3_ENST00000495373.1_Missense_Mutation_p.L51V|ARHGEF3_ENST00000498517.1_5'UTR|ARHGEF3_ENST00000497267.1_Missense_Mutation_p.L22V|ARHGEF3_ENST00000338458.4_Missense_Mutation_p.L83V|ARHGEF3_ENST00000296315.3_Missense_Mutation_p.L51V	NM_001128616.1	NP_001122088.1	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor (GEF) 3	51					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			cervix(1)|endometrium(3)|kidney(3)|large_intestine(4)|lung(11)|ovary(1)|prostate(1)|urinary_tract(1)	25				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		GGCGGGATGAGGTTTGCTAGC	0.473000													28	10					0	0	1	0	0
TRIM2	23321	broad.mit.edu	37	4	154217081	154217081	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr4:154217081C>T	ENST00000338700.5	+	6	1468	c.1403C>T	c.(1402-1404)cCg>cTg	p.P468L	TRIM2_ENST00000494872.1_3'UTR|TRIM2_ENST00000437508.2_Missense_Mutation_p.P441L	NM_015271.3	NP_056086.2	Q9C040	TRIM2_HUMAN	tripartite motif containing 2	441						cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|prostate(1)	19	all_hematologic(180;0.093)	Medulloblastoma(177;0.00225)		GBM - Glioblastoma multiforme(119;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0703)		GTTAAGTCCCCGGGGAGCGGC	0.527000													33	41					0	0	1	0	0
LOC101927209	101927209	broad.mit.edu	37	1	142713956	142713956	+	RNA	SNP	G	G	A	rs12161184	by1000genomes	TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:142713956G>A	ENST00000610091.1	-	0	1702																											AAGTTAAAGAGTAACCTGCAC	0.308000													3	26					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144940602	144940602	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:144940602C>T	ENST00000525985.1	-	2	6891	c.6820G>A	c.(6820-6822)Gac>Aac	p.D2274N				P58107	EPIPL_HUMAN	epiplakin 1	2274						cytoplasm|cytoskeleton	protein binding|structural molecule activity			NS(1)|autonomic_ganglia(1)|breast(1)|central_nervous_system(5)|cervix(1)|endometrium(8)|kidney(4)|large_intestine(2)|lung(30)|ovary(2)|pancreas(1)|prostate(10)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	71	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGCACGGGGTCGATGACGAAG	0.716000													7	208					0	0	1	0	0
ACSS1	84532	broad.mit.edu	37	20	25000701	25000701	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr20:25000701G>A	ENST00000537502.1	-	5	2473	c.942C>T	c.(940-942)taC>taT	p.Y314Y	ACSS1_ENST00000323482.4_Silent_p.Y397Y|ACSS1_ENST00000432802.2_Silent_p.Y397Y|ACSS1_ENST00000542618.1_Silent_p.Y276Y			Q9NUB1	ACS2L_HUMAN	acyl-CoA synthetase short-chain family member 1	397					acetyl-CoA biosynthetic process|ethanol oxidation|xenobiotic metabolic process	mitochondrial matrix	acetate-CoA ligase activity|AMP binding|ATP binding|protein binding			NS(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(11)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	26					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AGGCATCACCGTATTTCAGCA	0.572000													4	190					0	0	1	0	0
FRG2B	441581	broad.mit.edu	37	10	135438800	135438800	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr10:135438800G>A	ENST00000443774.1	-	4	692	c.643C>T	c.(643-645)Cgg>Tgg	p.R215W	FRG2B_ENST00000425520.1_Missense_Mutation_p.R214W			Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	214						nucleus		p.R215W(1)		endometrium(2)|kidney(2)|lung(14)|ovary(1)|prostate(1)	20		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		AGAGGCCCCCGGAGCCGAGTG	0.582000													37	27					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13409700	13409700	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:13409700C>T	ENST00000360228.5	-	19	2746	c.2747G>A	c.(2746-2748)tGg>tAg	p.W916*	CACNA1A_ENST00000573710.2_Nonsense_Mutation_p.W917*	NM_000068.3|NM_001127222.1|NM_001174080.1|NM_023035.2	NP_000059.3|NP_001120694.1|NP_001167551.1|NP_075461.2	O00555	CAC1A_HUMAN	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	917					cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			breast(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(3)|lung(25)|prostate(2)|urinary_tract(1)	42			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	CTCGCCCTCCCAGAACCCGGG	0.771000													17	22					0	0	1	0	0
BMS1P20	96610	broad.mit.edu	37	22	22664056	22664056	+	RNA	SNP	T	T	C	rs3178309		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr22:22664056T>C	ENST00000426066.1	+	0	623					NR_027293.1																						ATAAAGTATATGATTTTGTGT	0.348000													3	19					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658321	49658321	+	Nonsense_Mutation	SNP	G	G	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr10:49658321G>C	ENST00000249601.4	-	9	2147	c.1851C>G	c.(1849-1851)taC>taG	p.Y617*	ARHGAP22_ENST00000374172.1_Nonsense_Mutation_p.Y508*|ARHGAP22_ENST00000435790.2_Nonsense_Mutation_p.Y623*|ARHGAP22_ENST00000477708.2_Nonsense_Mutation_p.Y450*|ARHGAP22_ENST00000417912.2_Nonsense_Mutation_p.Y633*|ARHGAP22_ENST00000374170.1_Nonsense_Mutation_p.Y458*|ARHGAP22_ENST00000417247.2_Nonsense_Mutation_p.Y527*	NM_001256024.1|NM_021226.3	NP_001242953.1|NP_067049.2	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 22	617					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			endometrium(3)|large_intestine(3)|lung(7)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	18						CACTCCTCTCGTACTCAGTCC	0.687000													14	3					0	0	1	0	0
ADAM11	4185	broad.mit.edu	37	17	42854950	42854950	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr17:42854950G>A	ENST00000200557.6	+	22	2051	c.1882G>A	c.(1882-1884)Ggc>Agc	p.G628S	ADAM11_ENST00000535346.1_Missense_Mutation_p.G428S	NM_002390.4	NP_002381.2	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11	628	Cys-rich.				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			breast(2)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|liver(2)|lung(15)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	33		Prostate(33;0.0959)				CTACCACCAGGGCAAGGAGCT	0.617000													57	116					0	0	1	0	0
PCOLCE2	26577	broad.mit.edu	37	3	142567124	142567124	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:142567124G>A	ENST00000295992.3	-	3	689	c.383C>T	c.(382-384)tCt>tTt	p.S128F	PCOLCE2_ENST00000485766.1_Missense_Mutation_p.S128F	NM_013363.3	NP_037495.1	Q9UKZ9	PCOC2_HUMAN	procollagen C-endopeptidase enhancer 2	128	CUB 1.					extracellular region	collagen binding|heparin binding|peptidase activator activity			NS(1)|endometrium(1)|large_intestine(11)|lung(15)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)	32						GTTGGCATCAGAAATCATCTG	0.512000													39	61					0	0	1	0	0
KCNAB1	7881	broad.mit.edu	37	3	155861036	155861036	+	Missense_Mutation	SNP	A	A	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:155861036A>T	ENST00000471742.1	+	1	286	c.69A>T	c.(67-69)gaA>gaT	p.E23D	KCNAB1_ENST00000490337.1_Intron|KCNAB1_ENST00000389636.5_Intron	NM_003471.3	NP_003462.2	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related subfamily, beta member 1	316						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(8)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	28			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			AATCCAGTGAATCGGCTCTAA	0.512000													26	34					0	0	1	0	0
CIITA	4261	broad.mit.edu	37	16	11001758	11001758	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:11001758G>A	ENST00000324288.8	+	11	2542	c.2409G>A	c.(2407-2409)gcG>gcA	p.A803A	CIITA_ENST00000537380.1_Intron|CIITA_ENST00000381835.5_Intron	NM_000246.3	NP_000237	P33076	C2TA_HUMAN	class II, major histocompatibility complex, transactivator	803					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)|large_intestine(7)|ovary(1)|skin(1)|stomach(2)	12						CACTGCGGGCGCGGCAGCTGC	0.682000			T	"""FLJ27352, CD274, CD273, RALGDS, RUNDC2A, C16orf75, BCL6"""	"""PMBL, Hodgkin Lymphona, """								34	24					0	0	1	0	0
C12orf42	374470	broad.mit.edu	37	12	103696166	103696166	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr12:103696166G>A	ENST00000548048.1	-	9	1098	c.602C>T	c.(601-603)gCg>gTg	p.A201V	C12orf42_ENST00000378113.2_Missense_Mutation_p.A268V|C12orf42_ENST00000548883.1_Missense_Mutation_p.A268V|C12orf42_ENST00000315192.8_Intron			Q96LP6	CL042_HUMAN	chromosome 12 open reading frame 42	268										NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(7)|ovary(2)|prostate(1)	22						ATTTCCGGACGCGCCCAGGAG	0.667000													49	79					0	0	1	0	0
PHGDH	26227	broad.mit.edu	37	1	120278007	120278007	+	Missense_Mutation	SNP	C	C	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:120278007C>A	ENST00000369407.3	+	6	2138	c.631C>A	c.(631-633)Ctg>Atg	p.L211M	PHGDH_ENST00000369409.4_Missense_Mutation_p.L245M			O43175	SERA_HUMAN	phosphoglycerate dehydrogenase	245					brain development|L-serine biosynthetic process		electron carrier activity|NAD binding|phosphoglycerate dehydrogenase activity			breast(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(5)|ovary(1)|upper_aerodigestive_tract(2)	18	all_cancers(5;1.18e-09)|all_epithelial(5;2.16e-10)|Melanoma(3;1.93e-05)|all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0347)		Lung(183;0.0111)|LUSC - Lung squamous cell carcinoma(189;0.0593)	NADH(DB00157)	CGAAGGCGCCCTGCTCCGGGC	0.622000													4	129					0.00909568	0.00909568	1	1	0
SVEP1	79987	broad.mit.edu	37	9	113173859	113173859	+	Missense_Mutation	SNP	G	G	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr9:113173859G>C	ENST00000401783.2	-	37	6468	c.6132C>G	c.(6130-6132)ttC>ttG	p.F2044L	SVEP1_ENST00000374469.1_Missense_Mutation_p.F2021L|SVEP1_ENST00000297826.5_5'UTR	NM_153366.3	NP_699197.3	Q4LDE5	SVEP1_HUMAN	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	2044	Sushi 11.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			NS(1)|autonomic_ganglia(1)|breast(5)|central_nervous_system(1)|cervix(2)|endometrium(19)|kidney(8)|large_intestine(24)|lung(58)|ovary(7)|prostate(7)|skin(1)|stomach(4)|upper_aerodigestive_tract(5)|urinary_tract(4)	147						AGCAGTAGTAGAATGCAATGT	0.557000													15	27					0	0	1	0	0
MVP	9961	broad.mit.edu	37	16	29852959	29852959	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:29852959G>A	ENST00000357402.5	+	9	1372	c.1234G>A	c.(1234-1236)Gaa>Aaa	p.E412K	MVP_ENST00000395353.1_Missense_Mutation_p.E412K|MVP_ENST00000452209.2_3'UTR	NM_005115.4|NM_017458.3	NP_005106.2|NP_059447.2	Q14764	MVP_HUMAN	major vault protein	412					mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(4)|lung(7)|ovary(2)|skin(3)|soft_tissue(1)|stomach(1)	27						GACCCAGGACGAAGTCCTGTG	0.617000													20	18					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321370	52321370	+	Silent	SNP	T	T	C			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:52321370T>C	ENST00000356297.4	-	17	2914	c.2814A>G	c.(2812-2814)acA>acG	p.T938T	PXDNL_ENST00000543296.1_Silent_p.T938T	NM_144651.4	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog (Drosophila)-like	938					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			NS(1)|breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(6)|lung(25)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	48		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TGGGTGGGCCTGTAGAAAAGG	0.647000													9	39					0	0	1	0	0
IGSF9	57549	broad.mit.edu	37	1	159898436	159898436	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:159898436G>A	ENST00000368094.1	-	19	2939	c.2742C>T	c.(2740-2742)ccC>ccT	p.P914P	IGSF9_ENST00000493195.1_5'UTR|IGSF9_ENST00000361509.3_Silent_p.P898P	NM_001135050.1	NP_001128522.1	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9	914	Pro-rich.		P -> L (in dbSNP:rs35574000).			cell junction|integral to membrane|synapse				central_nervous_system(2)|endometrium(8)|kidney(3)|large_intestine(13)|lung(17)|ovary(3)|prostate(4)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	56	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GCAAGGGACTGGGTGGGGCTG	0.652000													5	9					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33517486	33517486	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:33517486C>T	ENST00000254260.3	-	3	273	c.238G>A	c.(238-240)Gtc>Atc	p.V80I	RHPN2_ENST00000400226.4_5'UTR	NM_033103.4	NP_149094.3	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	80					signal transduction	perinuclear region of cytoplasm	protein binding			NS(1)|breast(3)|central_nervous_system(5)|endometrium(12)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(5)|lung(7)|ovary(1)|prostate(3)|skin(3)|urinary_tract(1)	44	Esophageal squamous(110;0.137)					TCTGAGTTGACGAAGCTCAGC	0.562000													62	89					0	0	1	0	0
EPN1	29924	broad.mit.edu	37	19	56200276	56200276	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:56200276G>A	ENST00000411543.2	+	5	1399	c.852G>A	c.(850-852)gcG>gcA	p.A284A	EPN1_ENST00000591743.1_3'UTR|EPN1_ENST00000270460.6_Silent_p.A173A|EPN1_ENST00000085079.7_Silent_p.A173A	NM_001130071.1	NP_001123543.1	Q9Y6I3	EPN1_HUMAN	epsin 1	173	8 X 3 AA repeats of [ED]-P-W.|Ala/Gly/Pro-rich.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding			endometrium(5)|kidney(1)|large_intestine(2)|lung(8)|skin(1)	17		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CTCCCGAGGCGGAGCAGGCGT	0.692000													5	6					0	0	1	0	0
TRIM63	84676	broad.mit.edu	37	1	26385115	26385115	+	Splice_Site	SNP	C	C	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:26385115C>A	ENST00000374272.3	-	5	736		c.e5-1			NM_032588.3	NP_115977.2	Q969Q1	TRI63_HUMAN	tripartite motif containing 63, E3 ubiquitin protein ligase							cytoplasm|microtubule|nucleus	ligase activity|signal transducer activity|titin binding|zinc ion binding			kidney(1)|large_intestine(1)|ovary(1)|skin(1)|stomach(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;0.000154)|all_lung(284;0.00021)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;9.15e-26)|Colorectal(126;3.16e-08)|COAD - Colon adenocarcinoma(152;1.72e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000767)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		GACTGTTCTCCTGAGGACGGA	0.498000													4	74					0.00024832	0.000250803	1	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900051	151900051	+	Missense_Mutation	SNP	C	C	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chrX:151900051C>G	ENST00000393900.3	-	3	1103	c.750G>C	c.(748-750)ttG>ttC	p.L250F	CSAG4_ENST00000361201.4_RNA|MAGEA12_ENST00000393869.3_Missense_Mutation_p.L250F|MAGEA12_ENST00000357916.4_Missense_Mutation_p.L250F	NM_001166386.1	NP_001159858.1	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	250	MAGE.									breast(5)|large_intestine(5)|liver(1)|lung(14)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	28	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTGCACCAAATCTTGGG	0.567000													32	104					0	0	1	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559351	129559351	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr12:129559351G>A	ENST00000422113.2	-	9	2695	c.2369C>T	c.(2368-2370)aCg>aTg	p.T790M	TMEM132D_ENST00000389441.4_Missense_Mutation_p.T328M	NM_133448.2	NP_597705.2	Q14C87	T132D_HUMAN	transmembrane protein 132D	790						integral to membrane				NS(1)|breast(6)|cervix(2)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(33)|liver(1)|lung(69)|ovary(10)|pancreas(2)|prostate(2)|skin(7)|upper_aerodigestive_tract(5)|urinary_tract(2)	152	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GATGTTTGCCGTTCCAACAGC	0.483000													33	86					0	0	1	0	0
HAS2	3037	broad.mit.edu	37	8	122626355	122626355	+	Missense_Mutation	SNP	A	A	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:122626355A>T	ENST00000303924.4	-	4	2190	c.1653T>A	c.(1651-1653)gaT>gaA	p.D551E		NM_005328.2	NP_005319.1	Q92819	HAS2_HUMAN	hyaluronan synthase 2	551						integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	breast(2)|endometrium(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(5)|lung(19)|ovary(5)|skin(1)	38	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			AAGATCATACATCAAGCACCA	0.443000													52	135					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887546	12887546	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:12887546C>T	ENST00000535591.1	-	3	506	c.311G>A	c.(310-312)cGg>cAg	p.R104Q		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	104										NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						CAAGGGCTGCCGTTCTCTCAT	0.493000													5	214					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740332	62740332	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:62740332G>A	ENST00000371153.4	-	3	822	c.444C>T	c.(442-444)gcC>gcT	p.A148A	KANK4_ENST00000354381.3_Intron	NM_181712.4	NP_859063.3	Q5T7N3	KANK4_HUMAN	KN motif and ankyrin repeat domains 4	148										NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(49)|ovary(3)|prostate(4)|skin(9)|stomach(1)|upper_aerodigestive_tract(2)	81						AAGTGAGCTCGGCATCCTCTG	0.627000													21	47					0	0	1	0	0
SOS1	6654	broad.mit.edu	37	2	39250333	39250333	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr2:39250333C>T	ENST00000426016.1	-	11	1322	c.1236G>A	c.(1234-1236)atG>atA	p.M412I	SOS1_ENST00000472480.1_5'UTR|SOS1_ENST00000395038.2_Missense_Mutation_p.M412I|SOS1_ENST00000428721.2_3'UTR|SOS1_ENST00000402219.2_Missense_Mutation_p.M412I			Q07889	SOS1_HUMAN	son of sevenless homolog 1 (Drosophila)	412					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			autonomic_ganglia(1)|breast(6)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(9)|liver(1)|lung(29)|ovary(4)|prostate(1)|skin(4)|stomach(1)|urinary_tract(2)	75		all_hematologic(82;0.21)				GTTTCCCCTTCATTTGCTGAC	0.353000									Noonan syndrome				31	49					0	0	1	0	0
TNKS	8658	broad.mit.edu	37	8	9584174	9584174	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:9584174G>A	ENST00000310430.6	+	13	1971	c.1945G>A	c.(1945-1947)Gat>Aat	p.D649N	TNKS_ENST00000518281.1_Missense_Mutation_p.D412N	NM_003747.2	NP_003738.2	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	649					mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			NS(1)|endometrium(10)|kidney(6)|large_intestine(4)|lung(17)|ovary(2)|prostate(4)|skin(3)|upper_aerodigestive_tract(2)	49				COAD - Colon adenocarcinoma(149;0.0467)		ACGTACTTCTGATGTTGATTA	0.363000													70	119					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49690722	49690722	+	Missense_Mutation	SNP	G	G	A	rs142148405		TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr3:49690722G>A	ENST00000296452.4	+	5	3847	c.3733G>A	c.(3733-3735)Gca>Aca	p.A1245T		NM_003458.3	NP_003449.2	Q9UPA5	BSN_HUMAN	bassoon presynaptic cytomatrix protein	1245					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			breast(8)|central_nervous_system(2)|cervix(2)|endometrium(16)|kidney(3)|large_intestine(17)|lung(37)|ovary(7)|pancreas(1)|prostate(4)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	106				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		TCAGCCTGCCGCAGAGGGCAC	0.637000													41	67					0	0	1	0	0
SZT2	23334	broad.mit.edu	37	1	43893772	43893772	+	Missense_Mutation	SNP	A	A	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:43893772A>G	ENST00000562955.1	+	26	3731	c.3731A>G	c.(3730-3732)cAg>cGg	p.Q1244R	SZT2_ENST00000372442.1_Missense_Mutation_p.Q402R	NM_015284.3	NP_056099.3	Q5T011	SZT2_HUMAN	seizure threshold 2 homolog (mouse)	1301						peroxisome				NS(2)|breast(9)|central_nervous_system(1)|endometrium(17)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(19)|lung(39)|ovary(4)|pancreas(3)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(3)	113						GAGCATGCACAGCGGTGCTAT	0.637000													34	69					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31425842	31425842	+	Silent	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:31425842C>T	ENST00000389202.2	+	17	2116	c.2067C>T	c.(2065-2067)ttC>ttT	p.F689F		NM_005353.2	NP_005344.2	Q13349	ITAD_HUMAN	integrin, alpha D	689					cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity	p.F689F(1)		breast(1)|central_nervous_system(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|liver(2)|lung(43)|ovary(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(1)	71						GTGCCATTTTCAATGAAACCA	0.493000													171	296					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149489805	149489805	+	RNA	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr7:149489805G>A	ENST00000378016.2	+	0	5861							A2VEC9	SSPO_HUMAN	SCO-spondin						cell adhesion	extracellular space	peptidase inhibitor activity					Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCATCCACCGCAAGGCACGC	0.687000													13	15					0	0	1	0	0
ABCC1	4363	broad.mit.edu	37	16	16230365	16230365	+	Missense_Mutation	SNP	A	A	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:16230365A>G	ENST00000399408.2	+	30	4361	c.4186A>G	c.(4186-4188)Atg>Gtg	p.M1396V	ABCC1_ENST00000399410.3_Missense_Mutation_p.M1386V|ABCC1_ENST00000351154.5_Missense_Mutation_p.M1327V|ABCC1_ENST00000346370.5_Missense_Mutation_p.M1330V|ABCC1_ENST00000345148.5_Missense_Mutation_p.M1386V|ABCC1_ENST00000349029.5_Missense_Mutation_p.M1271V			P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	1386	ABC transporter 2.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(3)|endometrium(9)|kidney(3)|large_intestine(12)|lung(20)|ovary(5)|prostate(1)|skin(3)	56					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	TTCCCTCCGAATGAACCTGGA	0.552000													10	25					0	0	1	0	0
SGK2	10110	broad.mit.edu	37	20	42204997	42204997	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr20:42204997G>A	ENST00000373100.1	+	12	1287	c.827G>A	c.(826-828)cGg>cAg	p.R276Q	SGK2_ENST00000373092.3_Missense_Mutation_p.R276Q|SGK2_ENST00000341458.4_Missense_Mutation_p.R336Q|SGK2_ENST00000423407.3_Missense_Mutation_p.R276Q|SGK2_ENST00000373077.1_Missense_Mutation_p.R275Q|SGK2_ENST00000426287.1_Missense_Mutation_p.R302Q			Q9HBY8	SGK2_HUMAN	serum/glucocorticoid regulated kinase 2	336	Protein kinase.				intracellular protein kinase cascade|response to oxidative stress		ATP binding|potassium channel regulator activity|protein serine/threonine kinase activity|sodium channel regulator activity			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(2)|large_intestine(4)|lung(11)|pancreas(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			CAGAGGCAGCGGCTGGGCTCC	0.602000													36	62					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139606274	139606274	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:139606274G>A	ENST00000303045.6	-	63	5047	c.4601C>T	c.(4600-4602)cCc>cTc	p.P1534L	COL22A1_ENST00000341807.4_5'UTR|COL22A1_ENST00000435777.1_Missense_Mutation_p.P1514L	NM_152888.1	NP_690848.1	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1534	Collagen-like 15.|Gly-rich.|Pro-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			breast(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(2)|kidney(14)|large_intestine(29)|lung(107)|ovary(13)|pancreas(1)|prostate(3)|skin(12)|upper_aerodigestive_tract(15)|urinary_tract(4)	211	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGGACCTATGGGTCCAGAGGG	0.652000										HNSCC(7;0.00092)			35	70					0	0	1	0	0
TAL1	6886	broad.mit.edu	37	1	47691456	47691456	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:47691456G>A	ENST00000371883.3	-	2	681	c.105C>T	c.(103-105)aaC>aaT	p.N35N	TAL1_ENST00000371884.2_Silent_p.N35N|TAL1_ENST00000294339.3_Silent_p.N35N			P17542	TAL1_HUMAN	T-cell acute lymphocytic leukemia 1	35					basophil differentiation|cell fate commitment|cell proliferation|embryonic hemopoiesis|erythrocyte differentiation|megakaryocyte differentiation|positive regulation of cell division|positive regulation of chromatin assembly or disassembly|positive regulation of erythrocyte differentiation|positive regulation of mitotic cell cycle|positive regulation of protein complex assembly|positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	E-box binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity			haematopoietic_and_lymphoid_tissue(1)|lung(12)|prostate(1)|upper_aerodigestive_tract(1)	15						TGGCGACGCCGTTCAGCAGGA	0.791000			T	"""TRD@, SIL"""	lymphoblastic leukemia/biphasic								27	31					0	0	1	0	0
RNF217-AS1	7955	broad.mit.edu	37	6	125231517	125231517	+	RNA	SNP	T	T	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr6:125231517T>G	ENST00000439075.1	-	0	3228					NR_026876.1																						AGTTTGGACATTAGTGTGCAT	0.299000													16	20					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	56077173	56077173	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr10:56077173C>T	ENST00000373965.2	-	8	1128	c.734G>A	c.(733-735)cGa>cAa	p.R245Q	PCDH15_ENST00000395432.2_Missense_Mutation_p.R208Q|PCDH15_ENST00000395438.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000395430.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000395440.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000361849.3_Missense_Mutation_p.R245Q|PCDH15_ENST00000373957.3_Missense_Mutation_p.R223Q|PCDH15_ENST00000395445.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000395446.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000395442.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000437009.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000414778.1_Missense_Mutation_p.R250Q|PCDH15_ENST00000320301.6_Missense_Mutation_p.R245Q|PCDH15_ENST00000373955.1_Missense_Mutation_p.R245Q|PCDH15_ENST00000395433.1_Missense_Mutation_p.R223Q|PCDH15_ENST00000409834.1_Intron	NM_001142771.1|NM_001142772.1	NP_001136243.1|NP_001136244.1	Q96QU1	PCD15_HUMAN	protocadherin-related 15	245	Cadherin 2.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding	p.R250Q(1)|p.R245Q(1)		NS(3)|breast(6)|central_nervous_system(1)|cervix(3)|endometrium(18)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(39)|lung(108)|ovary(5)|pancreas(6)|prostate(6)|skin(12)|upper_aerodigestive_tract(12)|urinary_tract(1)	237		Melanoma(3;0.117)|Lung SC(717;0.238)				GGTGGTGGTTCGCCTCTCATT	0.478000										HNSCC(58;0.16)			60	19					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178098810	178098810	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr2:178098810C>T	ENST00000397062.3	-	2	789	c.235G>A	c.(235-237)Gag>Aag	p.E79K	NFE2L2_ENST00000464747.1_Missense_Mutation_p.E63K|NFE2L2_ENST00000446151.2_Missense_Mutation_p.E63K|NFE2L2_ENST00000397063.4_Missense_Mutation_p.E63K|NFE2L2_ENST00000423513.1_Missense_Mutation_p.E63K	NM_006164.4	NP_006155.2	Q16236	NF2L2_HUMAN	nuclear factor, erythroid 2-like 2	79					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.E79K(10)|p.E79Q(10)		central_nervous_system(1)|cervix(4)|endometrium(14)|kidney(5)|large_intestine(4)|liver(13)|lung(71)|oesophagus(29)|skin(2)|upper_aerodigestive_tract(11)|urinary_tract(4)	158			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TCACCTGTCTCTTCATCTAGT	0.443000			Mis		"""NSCLC, HNSCC"""					HNSCC(56;0.16)			41	40					0	0	1	0	0
LECT1	11061	broad.mit.edu	37	13	53313190	53313190	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr13:53313190G>A	ENST00000448904.2	-	2	299	c.189C>T	c.(187-189)taC>taT	p.Y63Y	LECT1_ENST00000377962.3_Silent_p.Y63Y	NM_001011705.1|NM_007015.2	NP_001011705.1|NP_008946.1	O75829	LECT1_HUMAN	leukocyte cell derived chemotaxin 1	63					cartilage development|proteoglycan metabolic process	endomembrane system|extracellular region|integral to membrane				NS(1)|breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|ovary(2)|skin(1)|urinary_tract(1)	15		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.38e-08)		CCTTCCAGAAGTAGAAGGCCC	0.706000													7	20					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30017613	30017613	+	Missense_Mutation	SNP	C	C	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr16:30017613C>A	ENST00000350119.4	-	11	1287	c.1097G>T	c.(1096-1098)cGg>cTg	p.R366L	DOC2A_ENST00000564944.1_Missense_Mutation_p.R366L|DOC2A_ENST00000564979.1_Missense_Mutation_p.R366L	NM_001282062.1|NM_001282063.1|NM_001282068.1|NM_003586.2	NP_001268991.1|NP_001268992.1|NP_001268997.1|NP_003577.2	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	366	Interaction with UNC13D.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			central_nervous_system(1)|endometrium(1)|large_intestine(3)|lung(2)|ovary(2)	9						CCAGTGCTTCCGAGCCTCGCC	0.721000													19	23					3.32936e-07	3.50276e-07	1	1	0
NFIL3	4783	broad.mit.edu	37	9	94172665	94172665	+	Missense_Mutation	SNP	C	C	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr9:94172665C>G	ENST00000297689.3	-	2	746	c.352G>C	c.(352-354)Gag>Cag	p.E118Q		NM_005384.2	NP_005375.2	Q16649	NFIL3_HUMAN	nuclear factor, interleukin 3 regulated	118	Leucine-zipper.				circadian rhythm|immune response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			endometrium(1)|large_intestine(4)|lung(9)|prostate(1)|skin(1)	16						GAAAGCAGCTCAGCTTTTAAA	0.393000													63	102					0	0	1	0	0
ARFRP1	10139	broad.mit.edu	37	20	62338384	62338384	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr20:62338384G>A	ENST00000440854.1	-	2	197	c.60C>T	c.(58-60)atC>atT	p.I20I	ARFRP1_ENST00000359715.5_Silent_p.I20I|ARFRP1_ENST00000607873.1_Intron|ARFRP1_ENST00000324228.2_Silent_p.I20I|ARFRP1_ENST00000609142.1_Silent_p.I20I	NM_001134758.2|NM_001267544.1|NM_001267545.1|NM_001267547.1|NM_001267549.1|NM_003224.4	NP_001128230.1|NP_001254473.1|NP_001254474.1|NP_001254476.1|NP_001254478.1|NP_003215.1	Q13795	ARFRP_HUMAN	ADP-ribosylation factor related protein 1	20					small GTPase mediated signal transduction	Golgi apparatus|membrane fraction	GTP binding|GTPase activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(2)|skin(1)	7	all_cancers(38;9.53e-13)|all_epithelial(29;2.64e-14)|Lung NSC(23;7e-10)|all_lung(23;2.53e-09)		Epithelial(9;4.09e-08)|all cancers(9;1.7e-07)|OV - Ovarian serous cystadenocarcinoma(5;0.0102)			CCAGGATCAGGATGCAGTACT	0.607000													28	34					0	0	1	0	0
OR51A2	401667	broad.mit.edu	37	11	4976491	4976491	+	Silent	SNP	G	G	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr11:4976491G>T	ENST00000380371.1	-	1	452	c.453C>A	c.(451-453)tcC>tcA	p.S151S	MMP26_ENST00000477339.1_Intron|MMP26_ENST00000380390.1_Intron	NM_001004748.1	NP_001004748.1	Q8NGJ7	O51A2_HUMAN	olfactory receptor, family 51, subfamily A, member 2	151					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(4)|kidney(1)|large_intestine(3)|lung(5)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	17		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCTCTTAAAGGAGAATACTA	0.423000													35	97					9.62906e-15	1.04574e-14	1	1	0
PAK3	5063	broad.mit.edu	37	X	110439847	110439847	+	Silent	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chrX:110439847C>T	ENST00000372007.5	+	16	1777	c.1386C>T	c.(1384-1386)taC>taT	p.Y462Y	PAK3_ENST00000360648.4_Silent_p.Y498Y|PAK3_ENST00000446737.1_Silent_p.Y462Y|PAK3_ENST00000417227.1_Silent_p.Y483Y|PAK3_ENST00000425146.1_Silent_p.Y462Y|PAK3_ENST00000519681.1_Silent_p.Y483Y|PAK3_ENST00000262836.4_Silent_p.Y477Y|PAK3_ENST00000372010.1_Silent_p.Y477Y|PAK3_ENST00000518291.1_Silent_p.Y498Y	NM_002578.3	NP_002569.1	O75914	PAK3_HUMAN	p21 protein (Cdc42/Rac)-activated kinase 3		Protein kinase.				multicellular organismal development		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding			breast(1)|cervix(1)|endometrium(6)|kidney(1)|large_intestine(7)|lung(15)|ovary(3)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	41						AACCCCCTTACCTTAATGAAA	0.438000										TSP Lung(19;0.15)			21	43					0	0	1	0	0
NCF2	4688	broad.mit.edu	37	1	183559371	183559371	+	Missense_Mutation	SNP	C	C	T			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:183559371C>T	ENST00000413720.1	-	1	368	c.94G>A	c.(94-96)Gtc>Atc	p.V32I	NCF2_ENST00000418089.1_Missense_Mutation_p.V32I|NCF2_ENST00000367535.3_Missense_Mutation_p.V32I|NCF2_ENST00000367536.1_Missense_Mutation_p.V32I	NM_001190794.1	NP_001177723.1	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	32					cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(4)|kidney(1)|large_intestine(2)|lung(10)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(2)|urinary_tract(2)	30						GGGTCCTGGACGGCACTGAAG	0.557000													98	132					0	0	1	0	0
ATAD2	29028	broad.mit.edu	37	8	124382167	124382167	+	Missense_Mutation	SNP	A	A	T	rs149531312	byFrequency	TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr8:124382167A>T	ENST00000287394.5	-	7	932	c.825T>A	c.(823-825)gaT>gaA	p.D275E	ATAD2_ENST00000521903.1_5'UTR	NM_014109.3	NP_054828.2	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	275	Asp-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(12)|lung(16)|ovary(3)|prostate(3)|skin(1)|urinary_tract(2)	48	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			cttcatcatcatcatcatcat	0.378000													9	31					0	0	1	0	0
TMEM63A	9725	broad.mit.edu	37	1	226044658	226044658	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:226044658G>A	ENST00000366835.3	-	16	1707	c.1437C>T	c.(1435-1437)ctC>ctT	p.L479L		NM_014698.2	NP_055513.2	O94886	TM63A_HUMAN	transmembrane protein 63A	479						integral to membrane|lysosomal membrane	nucleotide binding			breast(2)|endometrium(3)|large_intestine(5)|lung(6)|ovary(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	24	Breast(184;0.197)					CAATGGAGGGGAGCAGGGCCG	0.597000													18	29					0	0	1	0	0
FRMD1	79981	broad.mit.edu	37	6	168467491	168467491	+	Silent	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr6:168467491G>A	ENST00000283309.6	-	4	469	c.405C>T	c.(403-405)gcC>gcT	p.A135A	FRMD1_ENST00000440994.2_Silent_p.A67A|FRMD1_ENST00000537786.1_5'UTR	NM_024919.3	NP_079195.3	Q8N878	FRMD1_HUMAN	FERM domain containing 1	135	FERM.					cytoskeleton	binding			endometrium(3)|kidney(2)|large_intestine(5)|lung(6)|ovary(1)|prostate(1)|urinary_tract(1)	19		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCACGAAGGGGGCTCTGGGTT	0.567000													19	52					0	0	1	0	0
HTR1A	3350	broad.mit.edu	37	5	63257179	63257179	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr5:63257179G>A	ENST00000323865.3	-	1	601	c.368C>T	c.(367-369)tCc>tTc	p.S123F	RP11-158J3.2_ENST00000502882.1_RNA	NM_000524.3	NP_000515.2	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A, G protein-coupled	123					behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			cervix(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|lung(29)|ovary(2)|pancreas(2)|prostate(2)|stomach(1)|upper_aerodigestive_tract(1)	56		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GTGCAAGATGGATGAGGTGCA	0.642000													26	13					0	0	1	0	0
TENM4	26011	broad.mit.edu	37	11	78443573	78443573	+	Missense_Mutation	SNP	G	G	A			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr11:78443573G>A	ENST00000278550.7	-	21	3388	c.2926C>T	c.(2926-2928)Cgg>Tgg	p.R976W		NM_001098816.2	NP_001092286.2			teneurin transmembrane protein 4																		AAAGGTGCCCGCTCGAACCGC	0.542000													15	9					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16477440	16477440	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:16477440delG	ENST00000358432.5	-	2	258	c.104delC	c.(103-105)gctfs	p.A37fs	EPHA2_ENST00000461614.1_Intron	NM_004431.3	NP_004422.2	P29317	EPHA2_HUMAN	EPH receptor A2	37					activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			NS(1)|biliary_tract(1)|breast(3)|central_nervous_system(3)|cervix(2)|endometrium(1)|kidney(1)|large_intestine(6)|lung(12)|ovary(2)|pancreas(1)|prostate(3)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	42		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	TCCAGCTGCAGCAAAGTCCAG	0.607													57	39	---	---	---	---					
RP11-423O2.5	0	broad.mit.edu	37	1	142813147	142813147	+	RNA	DEL	T	T	-			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr1:142813147delT	ENST00000423385.1	-	0	88																											ATTATGTATATTTTTGAATCA	0.348													9	83	---	---	---	---					
MUC5B	727897	broad.mit.edu	37	11	1276413	1276414	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr11:1276413_1276414insG	ENST00000447027.1	+	36	15874_15875	c.15816_15817insG	c.(15817-15819)gccfs	p.A5273fs	MUC5B_ENST00000529681.1_Frame_Shift_Ins_p.A5270fs			Q9HC84	MUC5B_HUMAN	mucin 5B, oligomeric mucus/gel-forming	5270	VWFD 4.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding			cervix(2)|endometrium(36)|kidney(9)|lung(89)|urinary_tract(1)	137		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CACCCCCCACTGCCAGCCCCGC	0.673													4	2	---	---	---	---					
KMT2D	8085	broad.mit.edu	37	12	49420990	49421006	+	Frame_Shift_Del	DEL	GGGGAAGGGGGCGGGGA	GGGGAAGGGGGCGGGGA	-			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr12:49420990_49421006delGGGGAAGGGGGCGGGGA	ENST00000301067.7	-	48	14742_14758	c.14743_14759delTCCCCGCCCCCTTCCCC	c.(14743-14760)tccccgcccccttcccccfs	p.SPPPSP4915fs		NM_003482.3	NP_003473.3			lysine (K)-specific methyltransferase 2D									p.P4916P(1)|p.P4646P(1)									AGGTGCCAAGGGGGAAGGGGGCGGGGAGGGTTCTTCA	0.641													48	52	---	---	---	---					
PRR12	57479	broad.mit.edu	37	19	50117814	50117814	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BT-A42B-01A-32D-A23M-08	TCGA-BT-A42B-10A-01D-A23K-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	316411ea-2e0b-494a-b3a9-ce8225140e32	791afb2c-5644-4d7e-8c0b-249c53d4e64a	g.chr19:50117814delC	ENST00000418929.2	+	7	4810	c.4798delC	c.(4798-4800)cccfs	p.P1602fs		NM_020719.1	NP_065770.1	Q9ULL5	PRR12_HUMAN	proline rich 12	781							DNA binding			NS(1)|central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(1)|lung(2)|pancreas(1)|prostate(2)	11		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GGGGCGTGAACCCCCACCCAT	0.612													2	4	---	---	---	---					
