Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ZNF536	9745	broad.mit.edu	37	19	30935717	30935717	+	Silent	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr19:30935717C>T	ENST00000355537.3	+	2	1395	c.1248C>T	c.(1246-1248)ggC>ggT	p.G416G		NM_014717.1	NP_055532.1	O15090	ZN536_HUMAN	zinc finger protein 536	416					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			NS(3)|breast(6)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(22)|lung(119)|ovary(7)|prostate(4)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(3)	182	Esophageal squamous(110;0.0834)					TGCCCATGGGCGGCATGTCCC	0.627000													14	65					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51984784	51984784	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr19:51984784C>T	ENST00000396477.4	+	3	559	c.538C>T	c.(538-540)Cgg>Tgg	p.R180W	CEACAM18_ENST00000451626.1_Missense_Mutation_p.R241W	NM_001278392.1	NP_001265321.1	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion molecule 18	241						integral to membrane				breast(1)|endometrium(4)|large_intestine(3)|lung(8)|skin(1)	17		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TAGTAGTGACCGGATGACAAT	0.502000													13	48					0	0	1	0	0
CCDC82	79780	broad.mit.edu	37	11	96117437	96117437	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr11:96117437C>A	ENST00000278520.5	-	3	903	c.475G>T	c.(475-477)Gat>Tat	p.D159Y	CCDC82_ENST00000542662.1_Missense_Mutation_p.D159Y|CCDC82_ENST00000423339.2_Missense_Mutation_p.D159Y			Q8N4S0	CCD82_HUMAN	coiled-coil domain containing 82	159							protein binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(5)|lung(5)|ovary(1)|prostate(1)	19		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.154)		TTGTTGAGATCATTATCCTCT	0.343000													27	107					6.36457e-07	6.53659e-07	1	1	0
TBC1D3P5	440419	broad.mit.edu	37	17	25753502	25753502	+	RNA	SNP	C	C	T	rs35094692	by1000genomes	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr17:25753502C>T	ENST00000586223.1	+	0	1512					NR_033892.1																						CTCGGGCTCACCCCGTGCCTG	0.567000													7	83					0	0	1	0	0
EHD4	30844	broad.mit.edu	37	15	42193059	42193059	+	Silent	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr15:42193059G>A	ENST00000220325.4	-	6	1493	c.1410C>T	c.(1408-1410)gcC>gcT	p.A470A		NM_139265.3	NP_644670.1	Q9H223	EHD4_HUMAN	EH-domain containing 4	470	EH.				endocytic recycling|protein homooligomerization	early endosome membrane|endoplasmic reticulum|nucleus|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			NS(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(7)|ovary(2)|stomach(1)|urinary_tract(1)	20		all_cancers(109;2.54e-12)|all_epithelial(112;6.59e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		OV - Ovarian serous cystadenocarcinoma(18;1.6e-19)|GBM - Glioblastoma multiforme(94;3.77e-06)|COAD - Colon adenocarcinoma(120;0.0474)|Colorectal(105;0.0538)		TCTCCTTCTTGGCGTTGACAC	0.582000													14	59					0	0	1	0	0
TP53INP1	94241	broad.mit.edu	37	8	95952380	95952380	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr8:95952380C>T	ENST00000342697.4	-	3	588	c.181G>A	c.(181-183)Gag>Aag	p.E61K	TP53INP1_ENST00000378776.4_Missense_Mutation_p.E61K|TP53INP1_ENST00000448464.2_Missense_Mutation_p.E61K|NDUFAF6_ENST00000396113.1_Intron	NM_033285.3	NP_150601.1	Q96A56	T53I1_HUMAN	tumor protein p53 inducible nuclear protein 1	61	Glu-rich.				apoptosis	PML body				kidney(2)|large_intestine(3)|lung(2)|prostate(1)|skin(1)	9	Breast(36;8.75e-07)					GAAGGGTGCTCAGTAGGTGAC	0.463000													17	43					0	0	1	0	0
NBAS	51594	broad.mit.edu	37	2	15542413	15542413	+	Missense_Mutation	SNP	T	T	C			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr2:15542413T>C	ENST00000281513.5	-	26	2975	c.2950A>G	c.(2950-2952)Att>Gtt	p.I984V	NBAS_ENST00000441750.1_Missense_Mutation_p.I864V	NM_015909.3	NP_056993.2	A2RRP1	NBAS_HUMAN	neuroblastoma amplified sequence	984										NS(4)|breast(4)|central_nervous_system(3)|endometrium(6)|kidney(5)|large_intestine(12)|liver(1)|lung(54)|ovary(2)|pancreas(3)|prostate(9)|skin(6)|stomach(3)	112						TCAGGAATAATTTTTTGCTGC	0.348000													6	66					0	0	1	0	0
FBXW7	55294	broad.mit.edu	37	4	153247289	153247289	+	Missense_Mutation	SNP	G	G	C	rs149680468		TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr4:153247289G>C	ENST00000281708.4	-	10	2742	c.1513C>G	c.(1513-1515)Cgc>Ggc	p.R505G	FBXW7_ENST00000603548.1_Missense_Mutation_p.R505G|FBXW7_ENST00000603841.1_Missense_Mutation_p.R505G|FBXW7_ENST00000263981.5_Missense_Mutation_p.R425G|FBXW7_ENST00000393956.3_Missense_Mutation_p.R329G|FBXW7_ENST00000296555.5_Missense_Mutation_p.R387G	NM_033632.3	NP_361014.1	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase	505			R -> L (in an ovarian cancer cell line).		interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleoplasm|SCF ubiquitin ligase complex	protein binding	p.R505C(60)|p.R505G(18)|p.R425C(14)|p.R266C(13)|p.R425G(9)|p.R266G(9)|p.R387G(6)|p.R387C(3)|p.R505S(3)|p.R387S(1)|p.?(1)|p.R425S(1)|p.R266S(1)		NS(1)|biliary_tract(8)|bone(1)|breast(5)|central_nervous_system(6)|cervix(2)|endometrium(36)|haematopoietic_and_lymphoid_tissue(159)|kidney(6)|large_intestine(155)|lung(31)|ovary(10)|pancreas(3)|prostate(2)|skin(6)|stomach(16)|upper_aerodigestive_tract(9)|urinary_tract(6)	462	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TGAACACAGCGGACTGCTGCA	0.468000			"""Mis, N, D, F"""		"""colorectal, endometrial, T-ALL"""								24	102					0	0	1	0	0
UTS2	10911	broad.mit.edu	37	1	7913462	7913462	+	Silent	SNP	G	G	A	rs138271613		TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:7913462G>A	ENST00000054668.5	-	1	29	c.30C>T	c.(28-30)ctC>ctT	p.L10L	UTS2_ENST00000377516.2_5'UTR	NM_021995.2	NP_068835.1	O95399	UTS2_HUMAN	urotensin 2	104					muscle contraction|regulation of blood pressure|synaptic transmission	extracellular space	hormone activity			kidney(1)|lung(4)|urinary_tract(1)	6	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;1.38e-20)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.26e-71)|GBM - Glioblastoma multiforme(8;5.15e-36)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000386)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|STAD - Stomach adenocarcinoma(132;0.000951)|READ - Rectum adenocarcinoma(331;0.0642)		AAGTGACGCAGAGCATAAGAT	0.413000													21	91					0	0	1	0	0
C20orf166-AS1	253868	broad.mit.edu	37	20	61143501	61143501	+	RNA	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr20:61143501G>A	ENST00000475015.1	-	0	837				C20orf166-AS1_ENST00000412495.1_RNA																							CGGCTGTGGCGGGTGCAGGAG	0.647000													12	53					0	0	1	0	0
TOP2B	7155	broad.mit.edu	37	3	25686873	25686873	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr3:25686873C>T	ENST00000435706.2	-	2	344	c.143G>A	c.(142-144)aGa>aAa	p.R48K	TOP2B_ENST00000264331.4_Missense_Mutation_p.R53K			Q02880	TOP2B_HUMAN	topoisomerase (DNA) II beta 180kDa	53					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|endometrium(5)|kidney(1)|large_intestine(10)|lung(14)|ovary(1)|skin(2)|stomach(1)	36						CTGATACACTCTCTCAACAGA	0.358000													18	46					0	0	1	0	0
RRP9	9136	broad.mit.edu	37	3	51967533	51967533	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr3:51967533C>T	ENST00000232888.6	-	15	1490	c.1417G>A	c.(1417-1419)Gct>Act	p.A473T		NM_004704.3	NP_004695.1	O43818	U3IP2_HUMAN	ribosomal RNA processing 9, small subunit (SSU) processome component, homolog (yeast)	473					rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(3)|endometrium(1)|kidney(1)|large_intestine(7)|liver(1)|lung(6)|ovary(1)|skin(1)	21				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		CAGGAACCAGCAGCTGGGGGT	0.527000													8	27					0	0	1	0	0
SMEK2	57223	broad.mit.edu	37	2	55792049	55792049	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr2:55792049C>G	ENST00000272313.5	-	12	2136	c.1809G>C	c.(1807-1809)caG>caC	p.Q603H	SMEK2_ENST00000345102.5_Missense_Mutation_p.Q688H|SMEK2_ENST00000407823.3_Missense_Mutation_p.Q656H	NM_020463.2	NP_065196.1	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	688						microtubule organizing center|nucleus	protein binding			kidney(1)|large_intestine(4)|liver(1)|lung(7)|ovary(1)|prostate(1)|skin(1)	16			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TGTTCAGTTTCTGATTTTGTC	0.308000													8	37					0	0	1	0	0
ADAT2	134637	broad.mit.edu	37	6	143755111	143755111	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:143755111C>A	ENST00000606514.1	-	3	652	c.68G>T	c.(67-69)cGa>cTa	p.R23L	ADAT2_ENST00000237283.8_Missense_Mutation_p.R70L			Q7Z6V5	ADAT2_HUMAN	adenosine deaminase, tRNA-specific 2	70					tRNA processing		hydrolase activity|zinc ion binding			endometrium(2)|large_intestine(3)|lung(3)	8				OV - Ovarian serous cystadenocarcinoma(155;5.61e-06)|GBM - Glioblastoma multiforme(68;0.0115)		TTCTGCATGTCGAGTAGCCTG	0.423000													22	146					7.87624e-14	8.55135e-14	1	1	0
C11orf16	56673	broad.mit.edu	37	11	8947080	8947080	+	Silent	SNP	C	C	T	rs146836226	byFrequency	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr11:8947080C>T	ENST00000326053.5	-	5	1240	c.1134G>A	c.(1132-1134)caG>caA	p.Q378Q	C11orf16_ENST00000525780.1_Silent_p.Q378Q	NM_020643.2	NP_065694.2	Q9NQ32	CK016_HUMAN	chromosome 11 open reading frame 16	378										central_nervous_system(1)|endometrium(2)|kidney(1)|large_intestine(2)|lung(10)|ovary(1)|pancreas(1)|prostate(1)|stomach(2)|upper_aerodigestive_tract(1)	22				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		AGAGGCCACTCTGTCTCAGAG	0.547000													18	78					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20691117	20691117	+	Silent	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr7:20691117A>G	ENST00000404938.2	+	13	2059	c.1407A>G	c.(1405-1407)caA>caG	p.Q469Q	ABCB5_ENST00000443026.2_Silent_p.Q24Q|ABCB5_ENST00000406935.1_Silent_p.Q24Q|ABCB5_ENST00000258738.6_Silent_p.Q24Q|ABCB5_ENST00000477094.1_3'UTR	NM_001163941.1	NP_001157413.1	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP), member 5	24	ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			breast(2)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(11)|liver(1)|lung(37)|ovary(1)|pancreas(1)|prostate(1)|skin(10)|upper_aerodigestive_tract(1)	77						TGGTTAGTCAAGAGCCTGTTT	0.438000													24	96					0	0	1	0	0
LINC00264	645528	broad.mit.edu	37	10	26880266	26880266	+	RNA	SNP	G	G	A	rs138111133	by1000genomes	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr10:26880266G>A	ENST00000412114.1	+	0	501					NR_026793.1																						ACCAAGCCCAGTGGACAGATG	0.443000													3	30					0	0	1	0	0
SPIB	6689	broad.mit.edu	37	19	50927009	50927009	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr19:50927009G>T	ENST00000595883.1	+	5	512	c.487G>T	c.(487-489)Gca>Tca	p.A163S	SPIB_ENST00000597855.1_3'UTR|CTD-2545M3.6_ENST00000599632.1_Missense_Mutation_p.G297V|SPIB_ENST00000439922.2_Missense_Mutation_p.A72S|SPIB_ENST00000596074.1_3'UTR|SPIB_ENST00000270632.7_Splice_Site	NM_001243999.1|NM_001244000.1|NM_003121.4	NP_001230928.1|NP_001230929.1|NP_003112.2	Q01892	SPIB_HUMAN	Spi-B transcription factor (Spi-1/PU.1 related)	163					regulation of transcription from RNA polymerase II promoter	cytoplasm|microtubule cytoskeleton|nucleus	sequence-specific DNA binding			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(1)|lung(8)	14		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		GGGATCCGAGGCAGGTATGCG	0.647000													6	12					0.00116845	0.00116845	1	1	0
MYBL1	4603	broad.mit.edu	37	8	67514656	67514656	+	Silent	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr8:67514656G>A	ENST00000522677.3	-	2	533	c.123C>T	c.(121-123)gaC>gaT	p.D41D	MYBL1_ENST00000517885.1_Silent_p.D41D|MYBL1_ENST00000524176.2_Silent_p.D41D	NM_001080416.2|NM_001144755.1	NP_001073885.1|NP_001138227.1	P10243	MYBA_HUMAN	v-myb avian myeloblastosis viral oncogene homolog-like 1	41	HTH myb-type 1.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(1)|endometrium(1)|kidney(3)|large_intestine(7)|lung(9)|ovary(2)|pancreas(1)|skin(1)	25			Epithelial(68;0.00211)|all cancers(69;0.00726)|OV - Ovarian serous cystadenocarcinoma(28;0.00989)|BRCA - Breast invasive adenocarcinoma(89;0.0938)			TAATTACCTCGTCCCTTGTCC	0.403000													14	54					0	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28195117	28195117	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr22:28195117G>A	ENST00000302326.4	-	1	2369	c.1415C>T	c.(1414-1416)tCg>tTg	p.S472L		NM_002430.2	NP_002421.3	Q10571	MN1_HUMAN	meningioma (disrupted in balanced translocation) 1	472							binding			NS(1)|breast(2)|central_nervous_system(3)|endometrium(4)|kidney(3)|large_intestine(6)|lung(15)|ovary(3)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	45						GCCGTTCCACGAAGCGCAGCG	0.662000			T	ETV6	"""AML, meningioma"""								9	34					0	0	1	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521571	125521571	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr2:125521571G>A	ENST00000431078.1	+	16	2741	c.2377G>A	c.(2377-2379)Gtc>Atc	p.V793I		NM_130773.2	NP_570129.1	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5	793	Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding	p.V793I(2)		NS(1)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(24)|lung(100)|ovary(10)|prostate(12)|skin(4)|upper_aerodigestive_tract(3)	176				BRCA - Breast invasive adenocarcinoma(221;0.248)		CTGGAACGCCGTCTCATTTTA	0.428000													10	81					0	0	1	0	0
SNW1	22938	broad.mit.edu	37	14	78184661	78184661	+	Missense_Mutation	SNP	T	T	G	rs17825620	by1000genomes	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr14:78184661T>G	ENST00000555761.1	-	13	1489	c.1461A>C	c.(1459-1461)aaA>aaC	p.K487N	SNW1_ENST00000554775.1_Intron|SLIRP_ENST00000557431.1_Intron|SLIRP_ENST00000557623.1_Intron|SNW1_ENST00000261531.7_Intron			Q13573	SNW1_HUMAN	SNW domain containing 1	0					negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|regulation of transcription from RNA polymerase II promoter	catalytic step 2 spliceosome|nucleoplasm	Notch binding			NS(1)|endometrium(3)|kidney(3)|large_intestine(6)|lung(6)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	24			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		TATGAACTACTTTGCTTTCAC	0.438000													9	151					0	0	1	0	0
NADSYN1	55191	broad.mit.edu	37	11	71195380	71195380	+	Missense_Mutation	SNP	G	G	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr11:71195380G>T	ENST00000319023.2	+	15	1530	c.1342G>T	c.(1342-1344)Gat>Tat	p.D448Y	NADSYN1_ENST00000539574.1_Missense_Mutation_p.D188Y|NADSYN1_ENST00000526039.2_3'UTR|NADSYN1_ENST00000530055.1_Missense_Mutation_p.D77Y	NM_018161.4	NP_060631.2	Q6IA69	NADE_HUMAN	NAD synthetase 1	448	Ligase (By similarity).				NAD biosynthetic process|water-soluble vitamin metabolic process	cytosol	ATP binding|hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds|NAD+ synthase (glutamine-hydrolyzing) activity|protein binding			breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(11)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	25					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCTCAACATCGATCCAGCCGT	0.582000													9	54					1.08611e-07	1.13074e-07	1	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147092873	147092873	+	Splice_Site	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr7:147092873G>A	ENST00000361727.3	+	10	2186		c.e10+1			NM_014141.5	NP_054860.1	Q9UHC6	CNTP2_HUMAN	contactin associated protein-like 2						behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			NS(3)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(12)|haematopoietic_and_lymphoid_tissue(2)|kidney(4)|large_intestine(21)|lung(105)|ovary(9)|pancreas(2)|prostate(5)|skin(7)|stomach(3)|upper_aerodigestive_tract(6)|urinary_tract(3)	188	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TCATAGACAGGTAAATGATCT	0.398000										HNSCC(39;0.1)			15	117					0	0	1	0	0
KATNA1	11104	broad.mit.edu	37	6	149954043	149954043	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:149954043C>T	ENST00000367411.2	-	3	430	c.172G>A	c.(172-174)Gaa>Aaa	p.E58K	KATNA1_ENST00000335647.5_Missense_Mutation_p.E58K|KATNA1_ENST00000335643.8_Missense_Mutation_p.E58K	NM_007044.3	NP_008975.1	O75449	KTNA1_HUMAN	katanin p60 (ATPase containing) subunit A 1	58	Interaction with microtubule.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|skin(1)|urinary_tract(1)	12		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		ACATTTATTTCCTGCCAAACC	0.353000													6	74					0	0	1	0	0
GTF2E1	2960	broad.mit.edu	37	3	120469446	120469446	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr3:120469446G>A	ENST00000283875.5	+	2	140	c.47G>A	c.(46-48)cGg>cAg	p.R16Q		NM_005513.2	NP_005504.2	P29083	T2EA_HUMAN	general transcription factor IIE, polypeptide 1, alpha 56kDa	16	HTH TFE/IIEalpha-type.				interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	nucleoplasm	protein binding|zinc ion binding			NS(1)|breast(3)|endometrium(1)|kidney(1)|large_intestine(6)|lung(9)|ovary(1)	22				GBM - Glioblastoma multiforme(114;0.159)		GCATTGAAGCGGTTAGCCAAG	0.433000													6	110					0	0	1	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44802942	44802942	+	Missense_Mutation	SNP	C	C	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr7:44802942C>A	ENST00000309315.4	+	13	1913	c.1790C>A	c.(1789-1791)tCc>tAc	p.S597Y	ZMIZ2_ENST00000441627.1_Missense_Mutation_p.S597Y|ZMIZ2_ENST00000265346.7_Missense_Mutation_p.S571Y|ZMIZ2_ENST00000433667.1_Missense_Mutation_p.S565Y|ZMIZ2_ENST00000413916.1_Missense_Mutation_p.S539Y	NM_031449.3	NP_113637.3	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2	597					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			breast(3)|endometrium(2)|kidney(3)|large_intestine(6)|lung(10)|ovary(6)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	35						ATCAAGGTGTCCCTGAAGTGC	0.592000													27	134					1.66031e-10	1.75254e-10	1	1	0
ZBTB9	221504	broad.mit.edu	37	6	33423481	33423481	+	Missense_Mutation	SNP	G	G	C			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:33423481G>C	ENST00000395064.2	+	2	872	c.604G>C	c.(604-606)Gaa>Caa	p.E202Q		NM_152735.3	NP_689948.1	Q96C00	ZBTB9_HUMAN	zinc finger and BTB domain containing 9	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|lung(6)|skin(1)|upper_aerodigestive_tract(2)	11						GGAGGGAAGTGAACTGGGAGA	0.552000													19	106					0	0	1	0	0
ZMYM1	79830	broad.mit.edu	37	1	35579714	35579714	+	Silent	SNP	A	A	C			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:35579714A>C	ENST00000373330.1	+	11	2457	c.2283A>C	c.(2281-2283)gtA>gtC	p.V761V	ZMYM1_ENST00000359858.4_Silent_p.V761V|ZMYM1_ENST00000373329.1_3'UTR			Q5SVZ6	ZMYM1_HUMAN	zinc finger, MYM-type 1	761						nucleus	nucleic acid binding|protein dimerization activity|zinc ion binding			NS(1)|breast(1)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(5)|lung(8)|prostate(3)|skin(1)|upper_aerodigestive_tract(2)	31		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTAAAGAAGTAAAAGAACTCC	0.318000													12	34					0	0	1	0	0
TIMM17B	10245	broad.mit.edu	37	X	48752377	48752377	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chrX:48752377C>T	ENST00000396779.3	-	5	432	c.284G>A	c.(283-285)cGg>cAg	p.R95Q	TIMM17B_ENST00000495490.2_Missense_Mutation_p.R65Q|TIMM17B_ENST00000472645.1_5'UTR|TIMM17B_ENST00000376582.3_Missense_Mutation_p.R45Q|TIMM17B_ENST00000465150.2_Missense_Mutation_p.R95Q	NM_001167947.1	NP_001161419.1	O60830	TI17B_HUMAN	translocase of inner mitochondrial membrane 17 homolog B (yeast)	45					protein targeting to mitochondrion	integral to membrane|microtubule cytoskeleton|mitochondrial inner membrane presequence translocase complex	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			kidney(1)|large_intestine(1)|lung(3)|ovary(1)	6						CAACCGGTGCCGAATTCCCTG	0.547000													5	14					0	0	1	0	0
HECTD3	79654	broad.mit.edu	37	1	45475257	45475257	+	Silent	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:45475257C>T	ENST00000372172.4	-	5	929	c.858G>A	c.(856-858)aaG>aaA	p.K286K		NM_024602.5	NP_078878.3	Q5T447	HECD3_HUMAN	HECT domain containing E3 ubiquitin protein ligase 3	286	DOC.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity			breast(1)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(5)|lung(11)|prostate(1)|stomach(1)	28	Acute lymphoblastic leukemia(166;0.155)					TGGTGCCCTTCTTCATAGTAA	0.542000													18	88					0	0	1	0	0
C4orf17	84103	broad.mit.edu	37	4	100458840	100458840	+	Silent	SNP	C	C	G	rs34271979	byFrequency	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr4:100458840C>G	ENST00000514652.1	+	6	915	c.561C>G	c.(559-561)ctC>ctG	p.L187L	C4orf17_ENST00000326581.4_Silent_p.L187L			Q53FE4	CD017_HUMAN	chromosome 4 open reading frame 17	187										central_nervous_system(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(9)|prostate(1)|urinary_tract(3)	18				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		TGGCAAAGCTCTGTAGCATTT	0.373000													7	69					0	0	1	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr3:126707544T>G	ENST00000251772.4	+	1	108	c.39T>G	c.(37-39)ggT>ggG	p.G13G	PLXNA1_ENST00000393409.2_Silent_p.G36G			Q9UIW2	PLXA1_HUMAN	plexin A1	36					axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity	p.G13G(4)		breast(3)|central_nervous_system(5)|endometrium(10)|kidney(5)|large_intestine(4)|lung(32)|ovary(2)|pancreas(1)|prostate(2)|skin(3)	67				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.682000													10	17					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31854612	31854612	+	Silent	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:31854612C>T	ENST00000395728.3	-	16	2351	c.2352G>A	c.(2350-2352)gtG>gtA	p.V784V	EHMT2_ENST00000480912.1_5'UTR|EHMT2_ENST00000375537.4_Silent_p.V727V|EHMT2_ENST00000375530.4_Silent_p.V693V|EHMT2_ENST00000375528.4_Silent_p.V750V			Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	727					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			central_nervous_system(1)|cervix(2)|kidney(2)|large_intestine(3)|lung(6)|ovary(2)|prostate(4)|upper_aerodigestive_tract(1)	21						GGTGGTTGTTCACCACGGCCT	0.637000													27	170					0	0	1	0	0
BAZ1A	11177	broad.mit.edu	37	14	35234031	35234031	+	Missense_Mutation	SNP	C	C	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr14:35234031C>G	ENST00000360310.1	-	23	4225	c.3658G>C	c.(3658-3660)Gac>Cac	p.D1220H	BAZ1A_ENST00000382422.2_Missense_Mutation_p.D1220H|BAZ1A_ENST00000358716.4_Missense_Mutation_p.D1188H	NM_013448.2	NP_038476.2	Q9NRL2	BAZ1A_HUMAN	bromodomain adjacent to zinc finger domain, 1A	1220					chromatin remodeling|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ACF complex	zinc ion binding			breast(2)|central_nervous_system(2)|cervix(2)|endometrium(6)|kidney(2)|large_intestine(7)|lung(19)|ovary(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	48	Breast(36;0.0388)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;7.23e-05)|Lung(238;0.00019)|Epithelial(34;0.0793)|all cancers(34;0.175)	GBM - Glioblastoma multiforme(112;0.0659)		CCCATACTGTCTTCCACATCT	0.448000													16	121					0	0	1	0	0
HMCN1	83872	broad.mit.edu	37	1	186107047	186107047	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:186107047C>T	ENST00000271588.4	+	89	14096	c.13867C>T	c.(13867-13869)Cgg>Tgg	p.R4623W	HMCN1_ENST00000367492.2_Missense_Mutation_p.R4623W	NM_031935.2	NP_114141.2	Q96RW7	HMCN1_HUMAN	hemicentin 1	4623	TSP type-1 2.				response to stimulus|visual perception	basement membrane	calcium ion binding	p.R4623W(1)		NS(2)|autonomic_ganglia(1)|breast(10)|central_nervous_system(2)|cervix(1)|endometrium(28)|haematopoietic_and_lymphoid_tissue(4)|kidney(13)|large_intestine(58)|liver(3)|lung(101)|ovary(23)|pancreas(4)|prostate(20)|skin(8)|stomach(1)|upper_aerodigestive_tract(11)|urinary_tract(18)	308						GCATGGTGGGCGGCCATGTGA	0.468000													19	92					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41566487	41566487	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr22:41566487A>G	ENST00000263253.7	+	27	5583	c.4364A>G	c.(4363-4365)cAg>cGg	p.Q1455R	RP1-85F18.6_ENST00000415054.1_RNA	NM_001429.3	NP_001420.2	Q09472	EP300_HUMAN	E1A binding protein p300	1455					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding	p.Q1455R(1)		NS(2)|breast(11)|central_nervous_system(7)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(31)|kidney(5)|large_intestine(31)|liver(2)|lung(33)|ovary(2)|pancreas(4)|prostate(1)|skin(6)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(16)	171						CCTCCTGACCAGAAGATACCC	0.448000			"""T,  N, F, Mis, O"""	"""MLL, RUNXBP2"""	"""colorectal, breast, pancreatic, AML, ALL, DLBCL"""				Rubinstein-Taybi syndrome				21	95					0	0	1	0	0
MBD1	4152	broad.mit.edu	37	18	47800573	47800573	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr18:47800573A>G	ENST00000591416.1	-	11	1560	c.1129T>C	c.(1129-1131)Tgc>Cgc	p.C377R	MBD1_ENST00000588937.1_Missense_Mutation_p.C354R|MBD1_ENST00000382948.5_Missense_Mutation_p.C377R|MBD1_ENST00000591535.1_Missense_Mutation_p.C354R|MBD1_ENST00000585672.1_Missense_Mutation_p.C327R|MBD1_ENST00000424334.2_Missense_Mutation_p.C428R|MBD1_ENST00000590208.1_Missense_Mutation_p.C377R|MBD1_ENST00000398495.2_Intron|MBD1_ENST00000349085.2_Intron|MBD1_ENST00000398488.1_Intron|MBD1_ENST00000436910.1_Missense_Mutation_p.C354R|MBD1_ENST00000585595.1_Missense_Mutation_p.C402R|MBD1_ENST00000347968.3_Intron|MBD1_ENST00000398493.1_Intron|MBD1_ENST00000269471.5_Missense_Mutation_p.C354R|MBD1_ENST00000457839.2_Missense_Mutation_p.C402R|MBD1_ENST00000587605.1_Intron|MBD1_ENST00000339998.6_Missense_Mutation_p.C377R|MBD1_ENST00000353909.3_Missense_Mutation_p.C328R|MBD1_ENST00000269468.5_Missense_Mutation_p.C377R			Q9UIS9	MBD1_HUMAN	methyl-CpG binding domain protein 1	377					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|nuclear speck	methyl-CpG binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			breast(3)|central_nervous_system(1)|endometrium(6)|kidney(2)|large_intestine(5)|lung(14)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	36						AACTGCAGGCATTGGCGCCAA	0.642000													29	105					0	0	1	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995948	140995948	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chrX:140995948C>T	ENST00000285879.4	+	4	3044	c.2758C>T	c.(2758-2760)Ctc>Ttc	p.L920F	MAGEC1_ENST00000406005.2_5'UTR	NM_005462.4	NP_005453.2	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	920	MAGE.						protein binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(22)|lung(60)|ovary(1)|pancreas(1)|prostate(1)|skin(7)|stomach(5)|upper_aerodigestive_tract(7)|urinary_tract(1)	127	Acute lymphoblastic leukemia(192;6.56e-05)					GCGGTTTCTTCTCCTCAAATA	0.483000										HNSCC(15;0.026)			75	278					0	0	1	0	0
WASH6P	653440	broad.mit.edu	37	X	155252868	155252868	+	RNA	SNP	T	T	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chrX:155252868T>A	ENST00000285718.7	+	0	819				WASH6P_ENST00000461007.1_RNA														p.P304P(5)									TAGCCGAGCCTCTCAAGGCAG	0.632000													4	18					0	0	1	0	0
TRIO	7204	broad.mit.edu	37	5	14485268	14485268	+	Missense_Mutation	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr5:14485268A>G	ENST00000344204.4	+	47	6772	c.6748A>G	c.(6748-6750)Att>Gtt	p.I2250V	TRIO_ENST00000537187.1_Missense_Mutation_p.I2250V	NM_007118.2	NP_009049.2	O75962	TRIO_HUMAN	trio Rho guanine nucleotide exchange factor	2250	PH 2.				apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			NS(2)|breast(6)|central_nervous_system(4)|endometrium(16)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(21)|lung(34)|ovary(4)|prostate(2)|skin(11)|stomach(3)|upper_aerodigestive_tract(3)|urinary_tract(4)	118	Lung NSC(4;0.000742)					AGAGACCTTCATTTTGCATTC	0.403000													20	135					0	0	1	0	0
TACR3	6870	broad.mit.edu	37	4	104640578	104640578	+	Silent	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr4:104640578G>A	ENST00000304883.2	-	1	395	c.255C>T	c.(253-255)atC>atT	p.I85I		NM_001059.2	NP_001050.1	P29371	NK3R_HUMAN	tachykinin receptor 3	85						integral to plasma membrane	tachykinin receptor activity	p.I85I(2)		breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(19)|ovary(3)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	51		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		ACCAGAGCGCGATGCGCCAGG	0.647000													7	93					0	0	1	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820265	35820265	+	Silent	SNP	C	C	T	rs5928990	by1000genomes	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chrX:35820265C>T	ENST00000399992.1	+	3	147	c.48C>T	c.(46-48)tgC>tgT	p.C16C	MAGEB16_ENST00000399989.1_5'UTR|MAGEB16_ENST00000399988.1_5'UTR|MAGEB16_ENST00000399985.1_5'UTR|MAGEB16_ENST00000399987.1_5'UTR			A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	0										breast(2)|endometrium(1)|kidney(2)|large_intestine(2)|lung(16)|ovary(2)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	31						TTCTTCATTGCCTGCCCTCCT	0.522000													5	59					0	0	1	0	0
FLRT3	23767	broad.mit.edu	37	20	14306771	14306771	+	Missense_Mutation	SNP	C	C	T	rs147588771		TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr20:14306771C>T	ENST00000378053.3	-	2	1638	c.1382G>A	c.(1381-1383)cGc>cAc	p.R461H	MACROD2_ENST00000217246.4_Intron|MACROD2_ENST00000310348.4_Intron|FLRT3_ENST00000341420.4_Missense_Mutation_p.R461H	NM_013281.3	NP_037413.1	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	461	Fibronectin type-III.				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			breast(1)|kidney(2)|large_intestine(5)|lung(5)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	17		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		GTACTCACTGCGTTCCCCTGT	0.463000													12	147					0	0	1	0	0
KCNA2	3737	broad.mit.edu	37	1	111147111	111147111	+	Silent	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:111147111C>T	ENST00000485317.1	-	3	967	c.294G>A	c.(292-294)ttG>ttA	p.L98L	KCNA2_ENST00000525120.1_Intron|KCNA2_ENST00000316361.4_Silent_p.L98L|KCNA2_ENST00000440270.1_Silent_p.L98L|KCNA2_ENST00000369770.3_Silent_p.L98L			P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 2	98						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			endometrium(1)|kidney(1)|large_intestine(6)|liver(1)|lung(18)|ovary(1)|prostate(1)|skin(2)|urinary_tract(1)	32		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		CAGGTCGCCTCAATCGGCCCC	0.473000													21	65					0	0	1	0	0
RP11-24M17.5	0	broad.mit.edu	37	15	76074470	76074470	+	RNA	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr15:76074470A>G	ENST00000395215.3	+	0	649																		p.Q203R(4)									CGGTTACAGCAGACCATAAAG	0.577000													4	51					0	0	1	0	0
SERPINB5	5268	broad.mit.edu	37	18	61160385	61160385	+	Silent	SNP	T	T	C	rs2289521	by1000genomes	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr18:61160385T>C	ENST00000489441.1	+	5	719	c.624T>C	c.(622-624)gaT>gaC	p.D208D	SERPINB5_ENST00000382771.4_Intron|SERPINB5_ENST00000464346.1_Intron			P36952	SPB5_HUMAN	serpin peptidase inhibitor, clade B (ovalbumin), member 5	0					cellular component movement|regulation of proteolysis	cytoplasm|extracellular space	protein binding|serine-type endopeptidase inhibitor activity			kidney(3)|large_intestine(2)|lung(5)|ovary(1)|prostate(1)	12						TGAAAAATGATAGGGACAGAG	0.453000													4	65					0	0	1	0	0
KATNA1	11104	broad.mit.edu	37	6	149954044	149954044	+	Silent	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:149954044C>T	ENST00000367411.2	-	3	429	c.171G>A	c.(169-171)caG>caA	p.Q57Q	KATNA1_ENST00000335647.5_Silent_p.Q57Q|KATNA1_ENST00000335643.8_Silent_p.Q57Q	NM_007044.3	NP_008975.1	O75449	KTNA1_HUMAN	katanin p60 (ATPase containing) subunit A 1	57	Interaction with microtubule.				cell division|interphase of mitotic cell cycle|mitosis	microtubule|microtubule organizing center|spindle pole	ATP binding|microtubule binding|microtubule-severing ATPase activity|protein heterodimerization activity			endometrium(1)|kidney(1)|large_intestine(2)|lung(5)|ovary(1)|skin(1)|urinary_tract(1)	12		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;2.95e-12)|GBM - Glioblastoma multiforme(68;0.173)		CATTTATTTCCTGCCAAACCT	0.353000													6	75					0	0	1	0	0
HDAC7	51564	broad.mit.edu	37	12	48177866	48177866	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr12:48177866C>T	ENST00000080059.7	-	25	2925	c.2926G>A	c.(2926-2928)Gat>Aat	p.D976N	HDAC7_ENST00000354334.3_Missense_Mutation_p.D939N|HDAC7_ENST00000380610.4_3'UTR|HDAC7_ENST00000552960.1_Missense_Mutation_p.D959N|HDAC7_ENST00000427332.2_Missense_Mutation_p.D937N	NM_015401.3	NP_056216.2	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7	937					negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			breast(1)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(6)|lung(11)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	25				GBM - Glioblastoma multiforme(48;0.137)		CATTACCTATCTTCAGCCAGG	0.627000													7	44					0	0	1	0	0
LOC101927209	101927209	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:142713774A>G	ENST00000610091.1	-	0	1884																											CTTTTTCCACATTGTCATTTT	0.284000													6	94					0	0	1	0	0
SH3TC1	54436	broad.mit.edu	37	4	8230053	8230053	+	Missense_Mutation	SNP	C	C	T	rs116515695	byFrequency	TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr4:8230053C>T	ENST00000539824.1	+	12	2778	c.2404C>T	c.(2404-2406)Cgg>Tgg	p.R802W	SH3TC1_ENST00000245105.3_Missense_Mutation_p.R878W			Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	878							binding			NS(1)|breast(3)|endometrium(4)|kidney(4)|large_intestine(6)|lung(10)|pancreas(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(2)	33						GAGGACGGGCCGGACGAGGCA	0.677000													4	64					0	0	1	0	0
GALNT2	2590	broad.mit.edu	37	1	230391013	230391013	+	Missense_Mutation	SNP	G	G	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr1:230391013G>A	ENST00000541865.1	+	9	871	c.685G>A	c.(685-687)Gtg>Atg	p.V229M	GALNT2_ENST00000366672.4_Silent_p.P353P|GALNT2_ENST00000543760.1_Silent_p.P315P			Q10471	GALT2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)	85	Catalytic subdomain A.				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(6)|lung(10)|ovary(2)|prostate(5)|skin(2)	32	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				AGATCATCCCGTGCAGCCGTG	0.607000													18	103					0	0	1	0	0
OR4N5	390437	broad.mit.edu	37	14	20612277	20612277	+	Missense_Mutation	SNP	G	G	A	rs139546094		TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr14:20612277G>A	ENST00000333629.1	+	1	383	c.383G>A	c.(382-384)cGg>cAg	p.R128Q		NM_001004724.1	NP_001004724.1	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N, member 5	128					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(2)|lung(23)|ovary(1)|skin(2)|urinary_tract(1)	29	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		GCCATCTGCCGGCCTTTACAC	0.488000													38	199					0	0	1	0	0
EHMT2	10919	broad.mit.edu	37	6	31855596	31855596	+	Missense_Mutation	SNP	C	C	T			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr6:31855596C>T	ENST00000395728.3	-	13	2058	c.2059G>A	c.(2059-2061)Gag>Aag	p.E687K	EHMT2_ENST00000480912.1_5'UTR|EHMT2_ENST00000375537.4_Missense_Mutation_p.E630K|EHMT2_ENST00000375530.4_Missense_Mutation_p.E596K|EHMT2_ENST00000375528.4_Missense_Mutation_p.E653K			Q96KQ7	EHMT2_HUMAN	euchromatic histone-lysine N-methyltransferase 2	630					DNA methylation|peptidyl-lysine dimethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			central_nervous_system(1)|cervix(2)|kidney(2)|large_intestine(3)|lung(6)|ovary(2)|prostate(4)|upper_aerodigestive_tract(1)	21						TCCAGGGCCTCCCGGCCTGGC	0.662000													20	142					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739662	38739662	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr3:38739662delG	ENST00000449082.2	-	27	5048	c.5049delC	c.(5047-5049)cccfs	p.P1683fs		NM_006514.2	NP_006505.2	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha subunit	1683					sensory perception	voltage-gated sodium channel complex				NS(5)|breast(2)|central_nervous_system(3)|cervix(1)|endometrium(14)|kidney(5)|large_intestine(33)|lung(54)|ovary(5)|pancreas(1)|prostate(5)|skin(13)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(1)	150				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CATTGCTGTTGGGCAGATTGG	0.582													19	71	---	---	---	---					
KIAA0196	9897	broad.mit.edu	37	8	126087241	126087241	+	Splice_Site	DEL	T	T	-			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr8:126087241delT	ENST00000318410.7	-	8	1326	c.977delA	c.(976-978)cag>cg	p.Q326fs	KIAA0196_ENST00000517845.1_Splice_Site_p.Q178fs	NM_014846.3	NP_055661.3	Q12768	STRUM_HUMAN	KIAA0196	326					cell death	WASH complex				NS(1)|breast(3)|cervix(1)|endometrium(5)|kidney(3)|large_intestine(7)|lung(15)|ovary(2)|pancreas(1)|prostate(2)|upper_aerodigestive_tract(2)	42	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			AGAACCTACCTGTTCTCTGAC	0.388													12	95	---	---	---	---					
ACAT1	38	broad.mit.edu	37	11	108016949	108016950	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chr11:108016949_108016950insA	ENST00000265838.4	+	11	1117_1118	c.1026_1027insA	c.(1027-1029)aaafs	p.K343fs		NM_000019.3	NP_000010.1	P24752	THIL_HUMAN	acetyl-CoA acetyltransferase 1	343					acetoacetic acid biosynthetic process|branched chain family amino acid catabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	acetyl-CoA C-acetyltransferase activity|metal ion binding			endometrium(1)|large_intestine(1)|lung(3)|ovary(3)|prostate(2)	10		all_cancers(61;6.41e-10)|all_epithelial(67;2.83e-06)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		BRCA - Breast invasive adenocarcinoma(274;2.96e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.00108)|OV - Ovarian serous cystadenocarcinoma(223;0.192)	Sulfasalazine(DB00795)	ATGTGGGATTGAAAAAAGAAGA	0.307													44	175	---	---	---	---					
XIST	7503	broad.mit.edu	37	X	73067240	73067240	+	RNA	DEL	T	T	-			TCGA-DK-A3WX-01A-22D-A22Z-08	TCGA-DK-A3WX-10A-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	b62ad72b-d34b-44b3-b238-aedc487939b1	20a57718-4664-4e08-bf79-2a8486f53669	g.chrX:73067240delT	ENST00000429829.1	-	0	5348					NR_001564.2																						ATTGTCTTACttttttttttt	0.478													2	4	---	---	---	---					
