Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
BNC1	646	broad.mit.edu	37	15	83933066	83933066	+	Missense_Mutation	SNP	T	T	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:83933066T>C	ENST00000345382.2	-	4	1022	c.937A>G	c.(937-939)Aaa>Gaa	p.K313E	BNC1_ENST00000569704.1_Missense_Mutation_p.K306E|RP11-382A20.4_ENST00000565495.1_RNA	NM_001717.3	NP_001708.3	Q01954	BNC1_HUMAN	basonuclin 1	313					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(17)|lung(18)|ovary(4)|prostate(2)|skin(4)|urinary_tract(1)	56						TCTTCTTTTTTAGTAATAGCA	0.438000													12	47					0	0	1	0	0
FIZ1	84922	broad.mit.edu	37	19	56104596	56104596	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:56104596G>A	ENST00000221665.3	-	3	800	c.711C>T	c.(709-711)ttC>ttT	p.F237F		NM_032836.2	NP_116225.2	Q96SL8	FIZ1_HUMAN	FLT3-interacting zinc finger 1	237					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|protein kinase binding|receptor binding|zinc ion binding			breast(1)|endometrium(1)|kidney(2)|large_intestine(2)|lung(5)	11			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.107)		CGGGCGCGTTGAAGTCGCGCT	0.781000													3	4					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89923397	89923397	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:89923397G>A	ENST00000405460.2	+	7	1138	c.1042G>A	c.(1042-1044)Gat>Aat	p.D348N		NM_032119.3	NP_115495.3	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98	348	Calx-beta 3.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			NS(4)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(18)|large_intestine(46)|liver(2)|lung(80)|ovary(12)|pancreas(5)|prostate(1)|skin(50)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(6)	269		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCAAATAGTTGATGACACCAT	0.378000													32	97					0	0	1	0	0
ANKRD32	84250	broad.mit.edu	37	5	94030836	94030836	+	Missense_Mutation	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:94030836C>A	ENST00000265140.5	+	21	3415	c.2996C>A	c.(2995-2997)aCc>aAc	p.T999N	ANKRD32_ENST00000493934.1_Intron	NM_032290.3	NP_115666.2	Q9BQI6	ANR32_HUMAN	ankyrin repeat domain 32	999										NS(1)|breast(2)|endometrium(2)|large_intestine(1)|lung(3)|ovary(2)|prostate(1)|skin(1)	13		all_cancers(142;1.51e-09)|all_epithelial(76;4.68e-12)|all_lung(232;5.94e-05)|Ovarian(174;0.000953)|Lung NSC(167;0.00105)|Colorectal(57;0.122)|Lung SC(612;0.152)		all cancers(79;3.88e-18)		CATAAAGAAACCACCAGTGTT	0.348000													5	57					0.00307968	0.00317592	1	1	0
RBFOX2	23543	broad.mit.edu	37	22	36141976	36141976	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr22:36141976G>A	ENST00000405409.2	-	11	1411	c.1043C>T	c.(1042-1044)gCg>gTg	p.A348V	RBFOX2_ENST00000416721.2_Silent_p.G360G|RBFOX2_ENST00000359369.4_Missense_Mutation_p.A351V|RBFOX2_ENST00000449924.2_Silent_p.G364G|RBFOX2_ENST00000262829.7_Silent_p.G342G|RBFOX2_ENST00000414461.2_Missense_Mutation_p.A351V|RBFOX2_ENST00000397303.2_Silent_p.G341G|RBFOX2_ENST00000438146.2_Silent_p.G435G	NM_001031695.2|NM_001082576.1|NM_001082577.1|NM_014309.2	NP_001026865.1|NP_001076045.1|NP_001076046.1|NP_055124.1	O43251	RFOX2_HUMAN	RNA binding protein, fox-1 homolog (C. elegans) 2	0	Ala-rich.				estrogen receptor signaling pathway|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of cell proliferation|RNA splicing	cytoplasm|nucleus	nucleotide binding|RNA binding|transcription corepressor activity|transcription factor binding			endometrium(4)|large_intestine(7)|lung(7)	18						TTACCACAGCGCCAACTCCAT	0.443000													17	269					0	0	1	0	0
PLEKHM2	23207	broad.mit.edu	37	1	16053704	16053704	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:16053704G>A	ENST00000375799.3	+	9	1364	c.1137G>A	c.(1135-1137)ccG>ccA	p.P379P	RP11-288I21.1_ENST00000453804.1_RNA|PLEKHM2_ENST00000375793.2_Silent_p.P359P	NM_015164.2	NP_055979.2	Q8IWE5	PKHM2_HUMAN	pleckstrin homology domain containing, family M (with RUN domain) member 2	379					Golgi organization	cytoplasm	kinesin binding			cervix(1)|endometrium(1)|kidney(1)|large_intestine(1)|lung(5)|ovary(2)|upper_aerodigestive_tract(1)	12		Colorectal(325;0.000259)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00057)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GAGAGGGGCCGAGCAGCACCA	0.687000													6	12					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920041	4920041	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr12:4920041C>T	ENST00000433855.1	+	1	1700	c.834C>T	c.(832-834)ctC>ctT	p.L278L	KCNA6_ENST00000280684.3_Silent_p.L278L	NM_002235.3	NP_002226.1	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related subfamily, member 6	278						voltage-gated potassium channel complex	voltage-gated potassium channel activity			NS(1)|breast(3)|endometrium(5)|large_intestine(6)|lung(17)|ovary(3)|pancreas(1)|prostate(1)|skin(7)|upper_aerodigestive_tract(5)	49						CTTTTGAGCTCCTGGTGCGCT	0.557000										HNSCC(72;0.22)			25	71					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230125	140230125	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:140230125C>T	ENST00000378122.3	+	1	2769	c.2045C>T	c.(2044-2046)gCg>gTg	p.A682V	PCDHA6_ENST00000529310.1_Intron|PCDHA5_ENST00000529859.1_Intron|PCDHA6_ENST00000527624.1_Intron|PCDHA1_ENST00000394633.3_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA4_ENST00000512229.2_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA5_ENST00000529619.1_Intron|PCDHA9_ENST00000532602.1_Missense_Mutation_p.A682V|PCDHA8_ENST00000531613.1_Intron|PCDHA7_ENST00000525929.1_Intron|PCDHA1_ENST00000504120.2_Intron|PCDHA2_ENST00000526136.1_Intron	NM_014005.3	NP_054724.1														breast(1)|cervix(1)|endometrium(10)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(17)|lung(18)|ovary(4)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1)	59			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGTCGCGGGCGTCAGTGGGT	0.657000													19	27					0	0	1	0	0
DCUN1D2	55208	broad.mit.edu	37	13	114138370	114138370	+	Splice_Site	SNP	T	T	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr13:114138370T>C	ENST00000478244.1	-	2	287	c.5A>G	c.(4-6)cAt>cGt	p.H2R	DCUN1D2_ENST00000375399.2_Splice_Site_p.H2R|DCUN1D2_ENST00000332592.3_Intron	NM_001014283.1	NP_001014305.1	Q6PH85	DCNL2_HUMAN	DCN1, defective in cullin neddylation 1, domain containing 2	2										breast(1)|endometrium(1)|large_intestine(1)|lung(3)|stomach(1)	7	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0395)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.029)|GBM - Glioblastoma multiforme(44;0.234)			TTTAAGCTTATGCTTTGGGAT	0.493000													57	13					0	0	1	0	0
UNC80	285175	broad.mit.edu	37	2	210654275	210654275	+	Silent	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr2:210654275C>A	ENST00000439458.1	+	6	824	c.744C>A	c.(742-744)atC>atA	p.I248I	UNC80_ENST00000272845.6_Silent_p.I248I|UNC80_ENST00000478701.1_3'UTR	NM_032504.1	NP_115893.1	Q8N2C7	UNC80_HUMAN	unc-80 homolog (C. elegans)	248						integral to membrane				breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(9)|ovary(1)|prostate(1)	20						GTTCTCCTATCAACAGTCAAA	0.353000													18	32					2.94398e-08	3.29327e-08	1	1	0
PSMC2	5701	broad.mit.edu	37	7	103008039	103008039	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103008039G>A	ENST00000435765.1	+	11	1435	c.1024G>A	c.(1024-1026)Gaa>Aaa	p.E342K	PSMC2_ENST00000544811.1_Missense_Mutation_p.E205K|PSMC2_ENST00000292644.3_Missense_Mutation_p.E342K|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	342					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TAGAAAAATTGAATTTAGCTT	0.358000													13	44					0	0	1	0	0
FOLR4	390243	broad.mit.edu	37	11	94039818	94039818	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:94039818C>T	ENST00000440961.2	+	2	322	c.278C>T	c.(277-279)gCt>gTt	p.A93V		NM_001199206.1	NP_001186135.1	A6ND01	FOLR4_HUMAN	folate receptor 4, delta (putative)	93						extracellular region	folic acid binding|receptor activity			breast(1)|endometrium(1)|kidney(1)|large_intestine(3)|lung(4)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)	14						TTCATCCAGGCTATCTGCTTC	0.567000													18	43					0	0	1	0	0
UGT2A3	79799	broad.mit.edu	37	4	69811101	69811101	+	Missense_Mutation	SNP	C	C	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr4:69811101C>G	ENST00000251566.4	-	2	817	c.787G>C	c.(787-789)Gaa>Caa	p.E263Q	UGT2A3_ENST00000420231.2_5'UTR	NM_024743.3	NP_079019.3	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family, polypeptide A3	263						integral to membrane	glucuronosyltransferase activity			NS(1)|breast(1)|central_nervous_system(1)|kidney(5)|large_intestine(7)|lung(16)|ovary(1)|skin(1)|upper_aerodigestive_tract(2)|urinary_tract(1)	36						TGAGGAAATTCAAAATCCCAA	0.373000													11	37					0	0	1	0	0
SP4	6671	broad.mit.edu	37	7	21469484	21469484	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:21469484G>C	ENST00000222584.3	+	3	919	c.701G>C	c.(700-702)aGa>aCa	p.R234T		NM_003112.3	NP_003103.2	Q02446	SP4_HUMAN	Sp4 transcription factor	234					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(6)|lung(11)|ovary(3)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	35						GTCCAAATTAGACCTGGTGTT	0.443000													16	116					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103008218	103008218	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103008218G>A	ENST00000435765.1	+	12	1517	c.1106G>A	c.(1105-1107)aGa>aAa	p.R369K	PSMC2_ENST00000544811.1_Missense_Mutation_p.R232K|PSMC2_ENST00000292644.3_Missense_Mutation_p.R369K|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	369					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						AGAGATATCAGATTTGAACTG	0.363000													19	57					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5009489	5009489	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:5009489C>T	ENST00000380390.1	+	2	264	c.48C>T	c.(46-48)ttC>ttT	p.F16F	MMP26_ENST00000300762.1_Silent_p.F16F|MMP26_ENST00000477339.1_Intron			Q9NRE1	MMP26_HUMAN	matrix metallopeptidase 26	16					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			breast(1)|cervix(1)|endometrium(1)|large_intestine(3)|lung(11)|pancreas(1)|skin(3)|stomach(1)	22		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCTGGTGTTTCGCCGTTCCAG	0.502000											OREG0003716	type=REGULATORY REGION|Gene=MMP26|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	21	31					0	0	1	0	0
ASXL1	171023	broad.mit.edu	37	20	31024350	31024350	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr20:31024350G>A	ENST00000375687.4	+	13	4259	c.3835G>A	c.(3835-3837)Gtg>Atg	p.V1279M	ASXL1_ENST00000306058.5_Missense_Mutation_p.V1274M	NM_015338.5	NP_056153	Q8IXJ9	ASXL1_HUMAN	additional sex combs like 1 (Drosophila)	1279					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	PR-DUB complex	metal ion binding|protein binding			NS(1)|breast(2)|central_nervous_system(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(655)|kidney(5)|large_intestine(18)|liver(1)|lung(27)|ovary(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)	722						ATCTCCAAATGTGATCTCCTT	0.512000			"""F, N, Mis"""		"""MDS, CMML"""								36	26					0	0	1	0	0
ZNF280D	54816	broad.mit.edu	37	15	56961028	56961028	+	Missense_Mutation	SNP	C	C	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:56961028C>G	ENST00000559237.1	-	13	2182	c.1499G>C	c.(1498-1500)gGa>gCa	p.G500A	ZNF280D_ENST00000396245.1_Missense_Mutation_p.G217A|ZNF280D_ENST00000559000.1_Missense_Mutation_p.G500A|ZNF280D_ENST00000267807.7_Missense_Mutation_p.G513A	NM_001002843.1	NP_001002843.1	Q6N043	Z280D_HUMAN	zinc finger protein 280D	513					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(5)|kidney(4)|large_intestine(7)|lung(12)|ovary(1)|skin(1)	30				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		CACTTTTGTTCCAGGAGGCAA	0.318000													7	26					0	0	1	0	0
SQSTM1	8878	broad.mit.edu	37	5	179263552	179263552	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:179263552C>T	ENST00000389805.4	+	8	1460	c.1282C>T	c.(1282-1284)Ctg>Ttg	p.L428L	SQSTM1_ENST00000376929.3_Silent_p.L344L|SQSTM1_ENST00000402874.3_Silent_p.L344L|SQSTM1_ENST00000360718.5_Silent_p.L344L|SQSTM1_ENST00000510187.1_Silent_p.L344L|C5orf45_ENST00000403396.2_3'UTR	NM_003900.4	NP_003891.1	Q13501	SQSTM_HUMAN	sequestosome 1	428	Interaction with NTRK1 (By similarity).|UBA.				anti-apoptosis|apoptosis|cell differentiation|endosome transport|induction of apoptosis by extracellular signals|intracellular signal transduction|macroautophagy|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein localization|regulation of I-kappaB kinase/NF-kappaB cascade|ubiquitin-dependent protein catabolic process	cytosol|late endosome|nucleoplasm	protein kinase C binding|receptor tyrosine kinase binding|SH2 domain binding|ubiquitin binding|zinc ion binding		SQSTM1/ALK(2)	NS(1)|breast(1)|endometrium(1)|large_intestine(2)|liver(2)|lung(5)|ovary(1)	13	all_cancers(89;0.000205)|all_epithelial(37;7.15e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0395)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGGAGCGGCTCTGGACACCAT	0.552000													24	60					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762085	130762085	+	Missense_Mutation	SNP	T	T	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:130762085T>C	ENST00000392429.1	+	2	2896	c.518T>C	c.(517-519)cTa>cCa	p.L173P	TMEM200A_ENST00000296978.3_Missense_Mutation_p.L173P|TMEM200A_ENST00000545622.1_Missense_Mutation_p.L173P	NM_052913.2	NP_443145.1	Q86VY9	T200A_HUMAN	transmembrane protein 200A	173						integral to membrane				NS(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(30)|ovary(1)|prostate(4)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	52				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		ATTCACACGCTAAGAATCAAG	0.423000													10	29					0	0	1	0	0
CTHRC1	115908	broad.mit.edu	37	8	104388121	104388121	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr8:104388121G>A	ENST00000330295.5	+	2	448	c.306G>A	c.(304-306)tgG>tgA	p.W102*	CTHRC1_ENST00000520337.1_Nonsense_Mutation_p.W88*|CTHRC1_ENST00000415886.2_Nonsense_Mutation_p.W102*	NM_138455.3	NP_612464.1	Q96CG8	CTHR1_HUMAN	collagen triple helix repeat containing 1	102						collagen				endometrium(1)|large_intestine(5)|lung(4)|ovary(1)|urinary_tract(1)	12			OV - Ovarian serous cystadenocarcinoma(57;2.79e-06)|STAD - Stomach adenocarcinoma(118;0.197)			AGGAGTCCTGGACACCCAACT	0.453000													10	64					0	0	1	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110035202	110035202	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:110035202G>A	ENST00000453089.2	+	5	2180	c.1299G>A	c.(1297-1299)ctG>ctA	p.L433L	ZC3H12C_ENST00000278590.3_Silent_p.L464L|ZC3H12C_ENST00000528673.1_Silent_p.L465L			Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	464							endonuclease activity|nucleic acid binding|zinc ion binding			endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(11)|lung(16)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	37		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		AAGGAGGACTGGTGAAAAGCA	0.512000													3	23					0	0	1	0	0
COL18A1	80781	broad.mit.edu	37	21	46875522	46875522	+	Silent	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr21:46875522G>C	ENST00000359759.4	+	1	99	c.78G>C	c.(76-78)ctG>ctC	p.L26L	COL18A1_ENST00000400337.2_Intron|COL18A1_ENST00000355480.5_Silent_p.L26L			P39060	COIA1_HUMAN	collagen, type XVIII, alpha 1	26					cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			breast(1)|central_nervous_system(2)|endometrium(4)|kidney(2)|large_intestine(4)|lung(8)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	25				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		CCAACCTGCTGAACCTGAACT	0.642000													20	92					0	0	1	0	0
KDM4A	9682	broad.mit.edu	37	1	44137256	44137256	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:44137256G>C	ENST00000372396.3	+	11	1578	c.1444G>C	c.(1444-1446)Gca>Cca	p.A482P		NM_014663.2	NP_055478.2	O75164	KDM4A_HUMAN	lysine (K)-specific demethylase 4A	482			A -> E (in dbSNP:rs586339).		interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			breast(2)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(6)|lung(13)|prostate(1)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(1)	37						GGAAGAACAAGCAGCAGCTGC	0.448000													7	95					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118982346	118982346	+	Silent	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr9:118982346C>A	ENST00000328252.3	+	5	2418	c.2049C>A	c.(2047-2049)ggC>ggA	p.G683G	PAPPA_ENST00000534838.1_Intron	NM_002581.3	NP_002572.2	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A, pappalysin 1	683					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			NS(1)|breast(4)|endometrium(9)|kidney(2)|large_intestine(23)|lung(33)|ovary(4)|pancreas(2)|prostate(5)|skin(7)|stomach(1)|upper_aerodigestive_tract(6)|urinary_tract(1)	98						AAGTTCTGGGCCACACAACGG	0.562000													37	57					2.6416e-12	3.08576e-12	1	1	0
FAM214A	56204	broad.mit.edu	37	15	52903959	52903959	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:52903959G>A	ENST00000261844.7	-	4	369	c.217C>T	c.(217-219)Cga>Tga	p.R73*	FAM214A_ENST00000546305.2_Nonsense_Mutation_p.R80*	NM_019600.2	NP_062546.2	Q32MH5	K1370_HUMAN	family with sequence similarity 214, member A	73																	GACCTAGTTCGTCTGGCTTGG	0.398000													13	43					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94043017	94043017	+	Missense_Mutation	SNP	G	G	A	rs147074348		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:94043017G>A	ENST00000297268.6	+	27	2044	c.1573G>A	c.(1573-1575)Gat>Aat	p.D525N		NM_000089.3	NP_000080.2	P08123	CO1A2_HUMAN	collagen, type I, alpha 2	525					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	NS(2)|breast(2)|central_nervous_system(4)|cervix(1)|endometrium(6)|kidney(8)|large_intestine(21)|lung(51)|ovary(2)|prostate(1)|skin(7)|stomach(1)|upper_aerodigestive_tract(8)|urinary_tract(1)	115	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TCCAGGTCCTGATGGAAACAA	0.453000										HNSCC(75;0.22)			16	25					0	0	1	0	0
CNTROB	116840	broad.mit.edu	37	17	7838454	7838454	+	Silent	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:7838454C>A	ENST00000380262.3	+	4	1510	c.585C>A	c.(583-585)acC>acA	p.T195T	CNTROB_ENST00000380255.3_Silent_p.T195T|CNTROB_ENST00000563694.1_Silent_p.T195T|CNTROB_ENST00000565740.1_Silent_p.T195T	NM_001037144.5	NP_001032221.1	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	195					centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(8)|lung(9)	25		Prostate(122;0.173)				CAGAGCATACCCGCCGCAAGG	0.562000													3	19					0.004672	0.00474388	1	1	0
RPS8	6202	broad.mit.edu	37	1	45242394	45242394	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:45242394G>A	ENST00000396651.3	+	3	319	c.159G>A	c.(157-159)aaG>aaA	p.K53K	RPS8_ENST00000485390.1_3'UTR|RPS8_ENST00000372209.3_Intron			P62241	RS8_HUMAN	ribosomal protein S8	53					endocrine pancreas development|maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome			central_nervous_system(2)|large_intestine(1)|lung(4)|ovary(2)|prostate(1)	10	Acute lymphoblastic leukemia(166;0.155)					GAGGTAACAAGAAATACCGTG	0.562000													10	39					0	0	1	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37945897	37945897	+	Silent	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:37945897G>T	ENST00000373087.6	+	3	566	c.450G>T	c.(448-450)ggG>ggT	p.G150G		NM_025079.2	NP_079355.2	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	150					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			NS(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(5)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	21		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCAGCCATGGGAACAAGGAGG	0.632000													6	41					2.7689e-08	3.12388e-08	1	1	0
DSCAM	1826	broad.mit.edu	37	21	41452089	41452089	+	Silent	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr21:41452089G>T	ENST00000400454.1	-	25	4887	c.4410C>A	c.(4408-4410)acC>acA	p.T1470T		NM_001271534.1|NM_001389.3	NP_001258463.1|NP_001380.2	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule	1470	Fibronectin type-III 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			NS(2)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(22)|haematopoietic_and_lymphoid_tissue(4)|kidney(6)|large_intestine(22)|lung(47)|ovary(7)|pancreas(2)|prostate(3)|skin(14)|upper_aerodigestive_tract(6)|urinary_tract(4)	142		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CTTTTCCTAAGGTCTTTGCTT	0.428000													8	92					0.00307968	0.00317592	1	1	0
POLR3E	55718	broad.mit.edu	37	16	22320249	22320249	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr16:22320249G>A	ENST00000299853.5	+	5	336	c.169G>A	c.(169-171)Gag>Aag	p.E57K	POLR3E_ENST00000564209.1_Missense_Mutation_p.E57K|POLR3E_ENST00000564256.1_3'UTR|POLR3E_ENST00000418581.2_Missense_Mutation_p.E21K|POLR3E_ENST00000359210.4_Missense_Mutation_p.E57K	NM_001258033.1|NM_001258035.1|NM_018119.3	NP_001244962.1|NP_001244964.1|NP_060589.1	Q9NVU0	RPC5_HUMAN	polymerase (RNA) III (DNA directed) polypeptide E (80kD)	57					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA-directed RNA polymerase activity			central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(7)|lung(10)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	27				GBM - Glioblastoma multiforme(48;0.012)		CCTCCAGGTAGAGCTTGAGAT	0.627000													13	33					0	0	1	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37946006	37946006	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:37946006C>T	ENST00000373087.6	+	3	675	c.559C>T	c.(559-561)Cct>Tct	p.P187S		NM_025079.2	NP_079355.2	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	187					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding			NS(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(5)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	21		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GAAGGAGCAGCCTCGGCCCGA	0.627000													3	29					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114280167	114280167	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr4:114280167G>T	ENST00000357077.4	+	38	10446	c.10393G>T	c.(10393-10395)Gag>Tag	p.E3465*	ANK2_ENST00000264366.6_Nonsense_Mutation_p.E3432*|ANK2_ENST00000394537.3_Intron|ANK2_ENST00000506722.1_Intron|ANK2_ENST00000509550.1_Intron|ANK2_ENST00000510275.2_Intron	NM_001148.4	NP_001139.3	Q01484	ANK2_HUMAN	ankyrin 2, neuronal	3432					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding			NS(1)|biliary_tract(1)|breast(9)|central_nervous_system(10)|cervix(2)|endometrium(6)|haematopoietic_and_lymphoid_tissue(2)|kidney(7)|large_intestine(54)|liver(2)|lung(112)|ovary(8)|pancreas(1)|prostate(7)|skin(11)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(10)	248		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AGAAAGTAAGGAGCATTTCTT	0.458000													14	37					9.31168e-06	1.00749e-05	1	1	0
SMTN	6525	broad.mit.edu	37	22	31489677	31489677	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr22:31489677C>T	ENST00000404574.1	+	1	334	c.244C>T	c.(244-246)Cgg>Tgg	p.R82W	SMTN_ENST00000347557.2_Intron|SMTN_ENST00000358743.1_Intron|SMTN_ENST00000333137.7_Intron			P53814	SMTN_HUMAN	smoothelin	0					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			breast(2)|endometrium(2)|large_intestine(5)|lung(9)|ovary(3)|pancreas(1)|prostate(3)	25						GCTGAGCCTACGGCTGGGGGT	0.701000													4	4					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103007988	103007988	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103007988G>A	ENST00000435765.1	+	11	1384	c.973G>A	c.(973-975)Gat>Aat	p.D325N	PSMC2_ENST00000544811.1_Missense_Mutation_p.D188N|PSMC2_ENST00000292644.3_Missense_Mutation_p.D325N|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	325					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TAACAGACCTGATACTTTGGA	0.403000													11	48					0	0	1	0	0
ZC3H12A	80149	broad.mit.edu	37	1	37945923	37945923	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:37945923G>A	ENST00000373087.6	+	3	592	c.476G>A	c.(475-477)gGc>gAc	p.G159D		NM_025079.2	NP_079355.2	Q5D1E8	ZC12A_HUMAN	zinc finger CCCH-type containing 12A	159					angiogenesis|apoptosis|cell differentiation	cytoplasm|nucleus|plasma membrane	endonuclease activity|metal ion binding	p.G159D(1)		NS(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(5)|ovary(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	21		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TCCTGCCGGGGCATCCTGCTG	0.637000													8	43					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48905226	48905226	+	Silent	SNP	G	G	T	rs141651917	byFrequency	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:48905226G>T	ENST00000316623.5	-	3	683	c.228C>A	c.(226-228)ggC>ggA	p.G76G		NM_000138.4	NP_000129	P35555	FBN1_HUMAN	fibrillin 1	76					heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			NS(1)|breast(5)|cervix(3)|endometrium(5)|haematopoietic_and_lymphoid_tissue(4)|kidney(6)|large_intestine(43)|liver(1)|lung(49)|ovary(4)|pancreas(1)|prostate(9)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(2)	139		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		ACTGATTTCCGCCAGGTAAGG	0.393000													14	54					0.00316338	0.00323695	1	1	0
FAT3	120114	broad.mit.edu	37	11	92088561	92088561	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:92088561G>A	ENST00000298047.6	+	1	3300	c.3283G>A	c.(3283-3285)Gac>Aac	p.D1095N	FAT3_ENST00000525166.1_Missense_Mutation_p.D945N|FAT3_ENST00000409404.2_Missense_Mutation_p.D1095N|FAT3_ENST00000541502.1_Missense_Mutation_p.D1095N			Q8TDW7	FAT3_HUMAN	FAT atypical cadherin 3	1095	Cadherin 10.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			NS(1)|breast(2)|endometrium(10)|kidney(4)|large_intestine(11)|liver(2)|lung(37)|ovary(5)|pancreas(1)|prostate(4)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	85		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAGTATAGACGACGAGAGTGG	0.453000										TCGA Ovarian(4;0.039)			5	24					0	0	1	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43927132	43927132	+	Silent	SNP	A	A	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr2:43927132A>G	ENST00000282406.4	+	8	1145	c.1035A>G	c.(1033-1035)agA>agG	p.R345R		NM_172069.3	NP_742066.2	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	345						cytoplasm|cytoskeleton|integral to membrane	binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|kidney(4)|large_intestine(12)|lung(24)|pancreas(1)|prostate(1)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(1)	56		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GCATAAAGAGACCAGAACACA	0.428000													13	47					0	0	1	0	0
ZFP37	7539	broad.mit.edu	37	9	115806366	115806366	+	Missense_Mutation	SNP	C	C	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr9:115806366C>G	ENST00000374227.3	-	4	559	c.532G>C	c.(532-534)Gag>Cag	p.E178Q	ZFP37_ENST00000553380.1_Missense_Mutation_p.E193Q|ZFP37_ENST00000555206.1_Missense_Mutation_p.E179Q	NM_001282515.1|NM_001282518.1	NP_001269444.1|NP_001269447.1	Q9Y6Q3	ZFP37_HUMAN	ZFP37 zinc finger protein	178						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(1)|breast(3)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(6)|lung(14)|ovary(1)|prostate(1)|skin(1)|upper_aerodigestive_tract(3)|urinary_tract(3)	38						CCACATGACTCAAATTTAAGA	0.333000													9	38					0	0	1	0	0
KMT2D	8085	broad.mit.edu	37	12	49434618	49434618	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr12:49434618G>A	ENST00000301067.7	-	31	6934	c.6935C>T	c.(6934-6936)tCa>tTa	p.S2312L		NM_003482.3	NP_003473.3			lysine (K)-specific methyltransferase 2D																		GTGGGTGCCTGAGGAGGGTGA	0.617000													8	22					0	0	1	0	0
DTX4	23220	broad.mit.edu	37	11	58962721	58962721	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:58962721G>C	ENST00000227451.3	+	7	1519	c.1415G>C	c.(1414-1416)gGg>gCg	p.G472A	DTX4_ENST00000532982.1_Missense_Mutation_p.G366A	NM_015177.1	NP_055992.1	Q9Y2E6	DTX4_HUMAN	deltex homolog 4 (Drosophila)	472					Notch signaling pathway	cytoplasm	zinc ion binding	p.G366V(1)|p.G472V(1)		central_nervous_system(1)|endometrium(3)|large_intestine(3)|lung(11)|prostate(1)|upper_aerodigestive_tract(1)	20		all_epithelial(135;0.125)				ACCATTTATGGGGTGAAGACA	0.532000													13	35					0	0	1	0	0
PCK1	5105	broad.mit.edu	37	20	56137883	56137883	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr20:56137883G>A	ENST00000319441.4	+	4	702	c.538G>A	c.(538-540)Gtc>Atc	p.V180I	PCK1_ENST00000535860.1_Missense_Mutation_p.V48I|PCK1_ENST00000543666.1_Intron	NM_002591.3	NP_002582.3	P35558	PCKGC_HUMAN	phosphoenolpyruvate carboxykinase 1 (soluble)	180					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			endometrium(2)|kidney(1)|large_intestine(4)|liver(2)|lung(19)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(3)	34	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GGGCACGCCCGTCCTGGAAGC	0.562000													5	37					0	0	1	0	0
GPR21	2844	broad.mit.edu	37	9	125797575	125797575	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr9:125797575G>A	ENST00000373642.1	+	1	770	c.730G>A	c.(730-732)Gcc>Acc	p.A244T	RABGAP1_ENST00000373643.5_Intron|RABGAP1_ENST00000373647.4_Intron|RABGAP1_ENST00000493854.1_Intron	NM_005294.1	NP_005285.1	Q99679	GPR21_HUMAN	G protein-coupled receptor 21	244						integral to plasma membrane	G-protein coupled receptor activity			endometrium(3)|large_intestine(3)|lung(4)|ovary(1)|skin(1)|stomach(1)|urinary_tract(2)	15						GGAAGTGCAGGCCTGTCCTGA	0.488000													20	61					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89923175	89923175	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:89923175G>T	ENST00000405460.2	+	7	916	c.820G>T	c.(820-822)Gag>Tag	p.E274*		NM_032119.3	NP_115495.3	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98	274					cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			NS(4)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(3)|kidney(18)|large_intestine(46)|liver(2)|lung(80)|ovary(12)|pancreas(5)|prostate(1)|skin(50)|stomach(7)|upper_aerodigestive_tract(8)|urinary_tract(6)	269		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTTGGTTCCTGAGGAAGACCA	0.383000													13	67					1.3612e-06	1.50991e-06	1	1	0
RBM26	64062	broad.mit.edu	37	13	79928636	79928636	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr13:79928636G>C	ENST00000438737.2	-	13	2364	c.1924C>G	c.(1924-1926)Cca>Gca	p.P642A	RBM26_ENST00000267229.7_Missense_Mutation_p.P639A|RBM26_ENST00000438724.1_Missense_Mutation_p.P642A			Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	642					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			NS(1)|biliary_tract(1)|breast(2)|cervix(1)|endometrium(7)|kidney(4)|large_intestine(6)|lung(7)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	33		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		GAAGGTACTGGACCCAGCCGC	0.463000													36	9					0	0	1	0	0
THNSL1	79896	broad.mit.edu	37	10	25314303	25314303	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr10:25314303G>C	ENST00000524413.1	+	3	2498	c.2151G>C	c.(2149-2151)aaG>aaC	p.K717N	THNSL1_ENST00000376356.4_Missense_Mutation_p.K717N			Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1 (S. cerevisiae)	717					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			NS(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(7)|lung(5)|pancreas(1)|prostate(3)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)	28					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	AGCAAGAGAAGATGGAGTACC	0.388000													9	40					0	0	1	0	0
DDX4	54514	broad.mit.edu	37	5	55063741	55063741	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:55063741C>T	ENST00000505374.1	+	7	459	c.367C>T	c.(367-369)Cgg>Tgg	p.R123W	DDX4_ENST00000353507.5_Missense_Mutation_p.R123W|DDX4_ENST00000354991.5_Missense_Mutation_p.R123W|DDX4_ENST00000508580.1_3'UTR|DDX4_ENST00000511853.1_Missense_Mutation_p.R24W|DDX4_ENST00000514278.2_Intron|SLC38A9_ENST00000504880.1_Intron	NM_024415.2	NP_077726.1	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	123	Gly-rich.				multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(4)|lung(8)|ovary(1)|skin(3)|upper_aerodigestive_tract(2)	24		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TAATCCAACACGGAACAGAGG	0.333000													11	31					0	0	1	0	0
CELSR1	9620	broad.mit.edu	37	22	46765614	46765614	+	Missense_Mutation	SNP	G	G	A	rs62226999		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr22:46765614G>A	ENST00000262738.3	-	26	7846	c.7847C>T	c.(7846-7848)gCg>gTg	p.A2616V		NM_014246.1	NP_055061.1	Q9NYQ6	CELR1_HUMAN	cadherin, EGF LAG seven-pass G-type receptor 1	2616					central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			breast(8)|central_nervous_system(5)|cervix(1)|endometrium(15)|haematopoietic_and_lymphoid_tissue(5)|kidney(4)|large_intestine(13)|lung(27)|ovary(2)|pancreas(2)|prostate(3)|skin(6)|upper_aerodigestive_tract(1)|urinary_tract(3)	95		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GATGGGCCCCGCAAAGCTCCA	0.622000													6	27					0	0	1	0	0
ITGA3	3675	broad.mit.edu	37	17	48149456	48149456	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:48149456C>T	ENST00000320031.8	+	7	1396	c.1066C>T	c.(1066-1068)Cac>Tac	p.H356Y	ITGA3_ENST00000544892.1_Missense_Mutation_p.H131Y|ITGA3_ENST00000007722.7_Missense_Mutation_p.H356Y	NM_002204.2|NM_005501.2	NP_002195.1|NP_005492.1	P26006	ITA3_HUMAN	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	356					blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			endometrium(3)|kidney(2)|large_intestine(7)|lung(11)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|stomach(2)	31						CTTCCCTGCTCACCCCTCACT	0.562000													19	43					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4869946	4869946	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:4869946G>A	ENST00000322101.2	-	1	568	c.493C>T	c.(493-495)Ctg>Ttg	p.L165L	MMP26_ENST00000380390.1_Intron|MMP26_ENST00000477339.1_Intron	NM_001004758.1	NP_001004758.1	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S, member 1	165					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(3)|haematopoietic_and_lymphoid_tissue(2)|large_intestine(3)|lung(15)|ovary(1)|prostate(1)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(1)	33		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCAGGGGCAGATGGAGACCC	0.557000													12	44					0	0	1	0	0
ZNF92	168374	broad.mit.edu	37	7	64864186	64864186	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:64864186C>T	ENST00000328747.7	+	4	1358	c.1159C>T	c.(1159-1161)Cat>Tat	p.H387Y	ZNF92_ENST00000431504.1_Missense_Mutation_p.H311Y|ZNF92_ENST00000357512.2_Missense_Mutation_p.H355Y|ZNF92_ENST00000450302.2_Missense_Mutation_p.H318Y	NM_152626.2	NP_689839.1	Q03936	ZNF92_HUMAN	zinc finger protein 92	387						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(2)|endometrium(1)|large_intestine(3)|lung(4)|pancreas(1)|skin(1)|stomach(1)	13		Lung NSC(55;0.159)				CCTTACTAAACATAAAAGAAT	0.358000													19	22					0	0	1	0	0
IGKV3-11	28914	broad.mit.edu	37	2	89326682	89326682	+	RNA	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr2:89326682G>T	ENST00000483158.1	-	0	377																											CAGTTGCTACGCTGCTGACAG	0.478000													32	51					3.03874e-20	3.61364e-20	1	1	0
SCAPER	49855	broad.mit.edu	37	15	76994184	76994184	+	Missense_Mutation	SNP	A	A	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:76994184A>T	ENST00000538941.2	-	20	2624	c.1685T>A	c.(1684-1686)tTt>tAt	p.F562Y	SCAPER_ENST00000324767.7_Missense_Mutation_p.F808Y|SCAPER_ENST00000563290.1_Missense_Mutation_p.F808Y	NM_001145923.1	NP_001139395.1	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	807	Glu-rich.					endoplasmic reticulum|nucleus	zinc ion binding			NS(1)|breast(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(8)|lung(16)|ovary(2)|prostate(2)|skin(1)|urinary_tract(2)	39						AACATGGCTAAAAAGATATAC	0.358000													13	19					0	0	1	0	0
HOMER2	9455	broad.mit.edu	37	15	83532988	83532988	+	Silent	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:83532988C>A	ENST00000304231.8	-	4	510	c.318G>T	c.(316-318)gtG>gtT	p.V106V	HOMER2_ENST00000426485.1_Silent_p.V106V|HOMER2_ENST00000450735.2_Silent_p.V106V|HOMER2_ENST00000399166.2_Silent_p.V106V	NM_199330.2	NP_955362.1	Q9NSB8	HOME2_HUMAN	homer homolog 2 (Drosophila)	106	WH1.				metabotropic glutamate receptor signaling pathway	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane				cervix(1)|endometrium(2)|lung(6)	9						CAGCTTCTTTCACCTCCTGGA	0.388000													6	23					2.0095e-06	2.21045e-06	1	1	0
PSAP	5660	broad.mit.edu	37	10	73587834	73587834	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr10:73587834G>A	ENST00000394936.3	-	6	804	c.657C>T	c.(655-657)gtC>gtT	p.V219V	PSAP_ENST00000394934.1_Silent_p.V219V			P07602	SAP_HUMAN	prosaposin	219	Saposin B-type 2.				glycosphingolipid metabolic process|lipid transport|platelet activation|platelet degranulation	extracellular space|Golgi apparatus|integral to membrane|lysosomal lumen	enzyme activator activity|lipid binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(3)|ovary(1)|pancreas(1)|prostate(1)|skin(1)	13						CCAAGGCCTGGACAAAGGTGG	0.552000													5	50					0	0	1	0	0
SLC17A3	10786	broad.mit.edu	37	6	25861865	25861865	+	Missense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:25861865G>T	ENST00000397060.4	-	5	721	c.612C>A	c.(610-612)agC>agA	p.S204R	SLC17A3_ENST00000361703.6_Missense_Mutation_p.S126R|SLC17A3_ENST00000360657.3_Missense_Mutation_p.S126R	NM_001098486.1	NP_001091956.1	O00476	NPT4_HUMAN	solute carrier family 17 (organic anion transporter), member 3	126					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity			breast(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(5)|lung(10)|prostate(1)	20						ATAAAGCAATGCTGCAGAGTC	0.418000													24	56					1.66031e-10	1.88931e-10	1	1	0
PCNT	5116	broad.mit.edu	37	21	47847643	47847643	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr21:47847643C>T	ENST00000359568.5	+	34	7535	c.7428C>T	c.(7426-7428)ctC>ctT	p.L2476L	PCNT_ENST00000480896.1_3'UTR	NM_006031.5	NP_006022.3	O95613	PCNT_HUMAN	pericentrin	2476					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			NS(1)|breast(5)|central_nervous_system(2)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(15)|liver(2)|lung(41)|ovary(5)|pancreas(3)|prostate(3)|skin(5)|upper_aerodigestive_tract(2)|urinary_tract(2)	104	Breast(49;0.112)					AGCCCCGACTCAGTGGCTCAG	0.602000													14	71					0	0	1	0	0
MRAP	56246	broad.mit.edu	37	21	33671325	33671325	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr21:33671325G>A	ENST00000399784.2	+	3	230	c.43G>A	c.(43-45)Gaa>Aaa	p.E15K	MRAP_ENST00000497833.1_Intron|MRAP_ENST00000339944.4_Missense_Mutation_p.E15K|MRAP_ENST00000399786.3_Missense_Mutation_p.E15K|MRAP_ENST00000303645.5_Missense_Mutation_p.E15K	NM_178817.3	NP_848932.1	Q8TCY5	MRAP_HUMAN	melanocortin 2 receptor accessory protein	15					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|integral to membrane|perinuclear region of cytoplasm|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			endometrium(1)|large_intestine(2)|lung(3)	6						CTACAGCTATGAATACTACCT	0.597000													7	28					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74350837	74350837	+	Missense_Mutation	SNP	G	G	C	rs144093273	byFrequency	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr3:74350837G>C	ENST00000263665.6	-	14	1933	c.1906C>G	c.(1906-1908)Cgg>Ggg	p.R636G		NM_020872.1	NP_065923.1	Q9P232	CNTN3_HUMAN	contactin 3 (plasmacytoma associated)	636	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(39)|ovary(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	83		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AAAGGTGTCCGAGCCTGGATA	0.433000													11	32					0	0	1	0	0
DMD	1756	broad.mit.edu	37	X	32235148	32235148	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chrX:32235148C>T	ENST00000357033.4	-	44	6529	c.6323G>A	c.(6322-6324)cGt>cAt	p.R2108H	DMD_ENST00000378677.2_Missense_Mutation_p.R2104H	NM_000109.3|NM_004006.2|NM_004011.3|NM_004012.3|NM_004014.2	NP_000100.2|NP_003997|NP_004002.2|NP_004003.1|NP_004005.1	P11532	DMD_HUMAN	dystrophin	2108			R -> C (in dbSNP:rs16990169).		muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			NS(2)|breast(3)|central_nervous_system(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|large_intestine(17)|liver(1)|lung(25)|ovary(3)|pancreas(3)|prostate(2)|skin(1)|urinary_tract(2)	77		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ATAATGAAAACGCCGCCATTT	0.348000													13	11					0	0	1	0	0
CFHR4	10877	broad.mit.edu	37	1	196876458	196876458	+	Missense_Mutation	SNP	A	A	G	rs7417769	by1000genomes	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:196876458A>G	ENST00000367416.2	+	5	763	c.626A>G	c.(625-627)aAc>aGc	p.N209S	CFHR4_ENST00000367418.2_Intron|CFHR4_ENST00000251424.4_Intron|CFHR2_ENST00000367421.3_Intron|CFHR4_ENST00000608469.1_Intron	NM_001201550.2|NM_001201551.1	NP_001188479.1|NP_001188480.1			complement factor H-related 4											NS(1)|breast(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(20)|ovary(1)|pancreas(1)|skin(2)|stomach(1)	36						TCTTCAGAAAACTGTGGGCCT	0.383000													3	14					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50189507	50189507	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:50189507G>A	ENST00000284509.6	-	23	2820	c.2679C>T	c.(2677-2679)ttC>ttT	p.F893F	ATP8B4_ENST00000559829.1_Silent_p.F893F	NM_024837.2	NP_079113.2	Q8TF62	AT8B4_HUMAN	ATPase, class I, type 8B, member 4	893					ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(6)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(14)|lung(27)|ovary(2)|pancreas(1)|prostate(1)|skin(7)|urinary_tract(1)	73		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AGAAACCACAGAAGAAACCAA	0.328000													26	81					0	0	1	0	0
KDM4A	9682	broad.mit.edu	37	1	44137463	44137463	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:44137463G>C	ENST00000372396.3	+	11	1785	c.1651G>C	c.(1651-1653)Gat>Cat	p.D551H		NM_014663.2	NP_055478.2	O75164	KDM4A_HUMAN	lysine (K)-specific demethylase 4A	551					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			breast(2)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(6)|lung(13)|prostate(1)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(1)	37						TGCCAAAGGGGATGGCAGGGT	0.562000													15	114					0	0	1	0	0
C7orf26	79034	broad.mit.edu	37	7	6634164	6634164	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:6634164C>T	ENST00000344417.5	+	3	780	c.513C>T	c.(511-513)ttC>ttT	p.F171F	C7orf26_ENST00000359073.5_Silent_p.F152F|C7orf26_ENST00000472693.1_3'UTR	NM_024067.2	NP_076972.2	Q96N11	CG026_HUMAN	chromosome 7 open reading frame 26	171										endometrium(2)|large_intestine(2)|lung(5)|ovary(1)|skin(1)	11		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		AGCAGATATTCAGTGCCAGCC	0.502000													9	121					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62757854	62757854	+	Nonsense_Mutation	SNP	T	T	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:62757854T>A	ENST00000281156.4	-	3	543	c.265A>T	c.(265-267)Aag>Tag	p.K89*		NM_152688.2	NP_689901.2	Q5VWX1	KHDR2_HUMAN	KH domain containing, RNA binding, signal transduction associated 2	89	KH.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			NS(1)|breast(2)|endometrium(4)|kidney(2)|large_intestine(5)|liver(1)|lung(13)|ovary(3)|prostate(3)|skin(12)|upper_aerodigestive_tract(2)|urinary_tract(1)	49				BRCA - Breast invasive adenocarcinoma(397;0.149)		TGTAGCCTCTTCAAGGAGTTT	0.353000													21	39					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50158634	50158634	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:50158634G>A	ENST00000284509.6	-	26	3216	c.3075C>T	c.(3073-3075)atC>atT	p.I1025I	ATP8B4_ENST00000559829.1_Silent_p.I1025I	NM_024837.2	NP_079113.2	Q8TF62	AT8B4_HUMAN	ATPase, class I, type 8B, member 4	1025					ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			breast(6)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(14)|lung(27)|ovary(2)|pancreas(1)|prostate(1)|skin(7)|urinary_tract(1)	73		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGCTCCCCCAGATGAAGACGT	0.388000													19	44					0	0	1	0	0
TRIP10	9322	broad.mit.edu	37	19	6750343	6750343	+	Missense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:6750343G>T	ENST00000600428.1	+	12	1590	c.944G>T	c.(943-945)cGg>cTg	p.R315L	CTD-3128G10.6_ENST00000594056.1_RNA|TRIP10_ENST00000596758.1_Missense_Mutation_p.R423L|TRIP10_ENST00000313285.8_Missense_Mutation_p.R423L|TRIP10_ENST00000313244.9_Missense_Mutation_p.R479L			Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	479	Interaction with CDC42.|Interaction with PDE6G (By similarity).				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			NS(1)|breast(1)|endometrium(1)|large_intestine(1)|liver(2)|lung(7)|ovary(1)|prostate(1)|urinary_tract(1)	16						CTTAGCAACCGGGGAGACAGC	0.667000													13	47					0.00185496	0.00194329	1	1	0
ZNF615	284370	broad.mit.edu	37	19	52498046	52498046	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:52498046G>A	ENST00000602063.1	-	6	632	c.283C>T	c.(283-285)Caa>Taa	p.Q95*	ZNF615_ENST00000594083.1_Nonsense_Mutation_p.Q106*|ZNF615_ENST00000598071.1_Nonsense_Mutation_p.Q106*|ZNF615_ENST00000376716.5_Nonsense_Mutation_p.Q95*|ZNF615_ENST00000391795.3_Nonsense_Mutation_p.Q100*			Q8N8J6	ZN615_HUMAN	zinc finger protein 615	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(10)|lung(12)|ovary(5)|prostate(1)|skin(1)|stomach(3)|upper_aerodigestive_tract(2)	42		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00142)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TGAATACTTTGATTTTGCAAG	0.348000													20	20					0	0	1	0	0
UBE2N	7334	broad.mit.edu	37	12	93803827	93803827	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr12:93803827C>T	ENST00000318066.2	-	4	824	c.447G>A	c.(445-447)atG>atA	p.M149I	UBE2N_ENST00000549833.1_Missense_Mutation_p.M86I|UBE2N_ENST00000550657.1_3'UTR|UBE2N_ENST00000552442.1_Missense_Mutation_p.M102I	NM_003348.3	NP_003339.1	P61088	UBE2N_HUMAN	ubiquitin-conjugating enzyme E2N	149					DNA double-strand break processing|double-strand break repair via homologous recombination|histone ubiquitination|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of DNA repair|positive regulation of histone modification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity|postreplication repair|protein K63-linked ubiquitination|proteolysis|regulation of histone ubiquitination|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-MMS2 complex|UBC13-UEV1A complex|ubiquitin ligase complex	ATP binding|ubiquitin binding|ubiquitin-protein ligase activity			endometrium(3)|liver(2)|lung(5)	10						AAATATTATTCATGGCATATA	0.348000								Direct reversal of damage;Rad6 pathway					8	14					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103008346	103008346	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103008346G>A	ENST00000435765.1	+	13	1558	c.1147G>A	c.(1147-1149)Gct>Act	p.A383T	PSMC2_ENST00000544811.1_Missense_Mutation_p.A246T|PSMC2_ENST00000292644.3_Missense_Mutation_p.A383T|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	383					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TTTGAAAGGTGCTGAGATTAG	0.413000													17	65					0	0	1	0	0
VSTM1	284415	broad.mit.edu	37	19	54544246	54544246	+	Missense_Mutation	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:54544246C>A	ENST00000338372.2	-	9	855	c.680G>T	c.(679-681)gGa>gTa	p.G227V	VSTM1_ENST00000376626.1_Missense_Mutation_p.G196V|VSTM1_ENST00000425006.2_3'UTR|VSTM1_ENST00000366170.2_Missense_Mutation_p.G139V	NM_198481.3	NP_940883.2	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	227						integral to membrane				breast(1)|large_intestine(3)|lung(11)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	18	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		TTCATGAGATCCTGGGGGCTC	0.557000													15	14					1.5739e-10	1.80656e-10	1	1	0
PSMC2	5701	broad.mit.edu	37	7	103008392	103008392	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103008392G>A	ENST00000435765.1	+	13	1604	c.1193G>A	c.(1192-1194)aGa>aAa	p.R398K	PSMC2_ENST00000544811.1_Missense_Mutation_p.R261K|PSMC2_ENST00000292644.3_Missense_Mutation_p.R398K|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	398					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TTTGCCATCAGAGCACGGCGA	0.423000													16	77					0	0	1	0	0
ARSD	414	broad.mit.edu	37	X	2825476	2825476	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chrX:2825476C>T	ENST00000381154.1	-	10	1693	c.1618G>A	c.(1618-1620)Gtg>Atg	p.V540M		NM_001669.3	NP_001660.2	P51689	ARSD_HUMAN	arylsulfatase D	540						lysosome	arylsulfatase activity|metal ion binding			large_intestine(3)|lung(3)	6		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CTTGCTATCACGGCGTGGTAC	0.647000													4	10					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49710985	49710985	+	Missense_Mutation	SNP	C	C	A	rs149523462		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:49710985C>A	ENST00000451037.2	-	8	1756	c.816G>T	c.(814-816)caG>caT	p.Q272H	CA10_ENST00000285273.4_Missense_Mutation_p.Q272H|CA10_ENST00000340813.6_Missense_Mutation_p.Q278H|CA10_ENST00000570565.1_Missense_Mutation_p.Q197H|CA10_ENST00000442502.2_Missense_Mutation_p.Q272H	NM_020178.4	NP_064563.1	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	272					brain development					cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(21)|ovary(1)|skin(3)|stomach(2)|urinary_tract(1)	41			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			ATGGCTGGTTCTGGCTGAGCA	0.498000													15	46					2.23348e-06	2.43653e-06	1	1	0
APLP1	333	broad.mit.edu	37	19	36369487	36369487	+	Splice_Site	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:36369487G>A	ENST00000221891.4	+	14	1773	c.1581G>A	c.(1579-1581)ggG>ggA	p.G527G	APLP1_ENST00000586861.1_Splice_Site_p.G520G|APLP1_ENST00000537454.2_Splice_Site_p.G487G	NM_001024807.1|NM_005166.3	NP_001019978.1|NP_005157.1	P51693	APLP1_HUMAN	amyloid beta (A4) precursor-like protein 1	526					apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			breast(4)|endometrium(2)|kidney(2)|large_intestine(12)|liver(1)|lung(9)|ovary(2)|upper_aerodigestive_tract(1)	33	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGGGGGTAGGGTCCACAGAAC	0.488000													8	28					0	0	1	0	0
FBXW7	55294	broad.mit.edu	37	4	153244232	153244232	+	Missense_Mutation	SNP	T	T	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr4:153244232T>C	ENST00000281708.4	-	12	3154	c.1925A>G	c.(1924-1926)gAt>gGt	p.D642G	FBXW7_ENST00000296555.5_Missense_Mutation_p.D524G|FBXW7_ENST00000603841.1_Missense_Mutation_p.D642G|FBXW7_ENST00000603548.1_Missense_Mutation_p.D642G|FBXW7_ENST00000263981.5_Missense_Mutation_p.D562G|FBXW7_ENST00000393956.3_Missense_Mutation_p.D466G	NM_033632.3	NP_361014.1	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase	642					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleoplasm|SCF ubiquitin ligase complex	protein binding	p.?(1)		NS(1)|biliary_tract(8)|bone(1)|breast(5)|central_nervous_system(6)|cervix(2)|endometrium(36)|haematopoietic_and_lymphoid_tissue(159)|kidney(6)|large_intestine(155)|lung(31)|ovary(10)|pancreas(3)|prostate(2)|skin(6)|stomach(16)|upper_aerodigestive_tract(9)|urinary_tract(6)	462	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				AGTTCCATCATCTGAGCTGGT	0.428000			"""Mis, N, D, F"""		"""colorectal, endometrial, T-ALL"""								16	59					0	0	1	0	0
NKPD1	284353	broad.mit.edu	37	19	45656867	45656867	+	Missense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:45656867G>T	ENST00000317951.4	-	4	827	c.828C>A	c.(826-828)ttC>ttA	p.F276L	NKPD1_ENST00000429338.1_Missense_Mutation_p.F54L|NKPD1_ENST00000438936.2_Missense_Mutation_p.F54L|NKPD1_ENST00000589776.1_Missense_Mutation_p.F54L	NM_198478.3	NP_940880.3			NTPase, KAP family P-loop domain containing 1											endometrium(1)|lung(4)|prostate(2)|urinary_tract(1)	8		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		GGATGAAAAGGAACTGCACGT	0.662000													3	7					0.00024832	0.000264341	1	1	0
ACTN4	81	broad.mit.edu	37	19	39191751	39191751	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:39191751C>T	ENST00000252699.2	+	3	463	c.387C>T	c.(385-387)atC>atT	p.I129I	ACTN4_ENST00000424234.2_Intron|ACTN4_ENST00000390009.3_Intron	NM_004924.4	NP_004915.2	O43707	ACTN4_HUMAN	actinin, alpha 4	129	Actin-binding.|CH 1.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity			NS(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(4)|lung(12)|ovary(1)|prostate(1)|skin(1)|urinary_tract(3)	30	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TGGTCTCCATCGGGGCAGAAG	0.532000													16	30					0	0	1	0	0
ZNF365	22891	broad.mit.edu	37	10	64415128	64415128	+	Splice_Site	SNP	C	C	T	rs79964532		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr10:64415128C>T	ENST00000395251.1	+	4	462	c.128C>T	c.(127-129)tCa>tTa	p.S43L	ZNF365_ENST00000395249.1_Intron|ZNF365_ENST00000410046.3_Intron	NM_199452.3	NP_955524	Q70YC4	TALAN_HUMAN	zinc finger protein 365	43										breast(1)|endometrium(6)|kidney(1)|large_intestine(5)|lung(7)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	27	Prostate(12;0.0297)|all_hematologic(501;0.228)					TCCACAAAGTCAACACATCTA	0.468000													7	16					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10417249	10417249	+	Silent	SNP	C	C	T	rs113465029		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr3:10417249C>T	ENST00000397077.1	-	10	1721	c.1146G>A	c.(1144-1146)ccG>ccA	p.P382P	ATP2B2_ENST00000383800.4_Silent_p.P382P|ATP2B2_ENST00000360273.2_Silent_p.P427P|ATP2B2_ENST00000343816.4_Silent_p.P413P|ATP2B2_ENST00000352432.4_Silent_p.P427P			Q01814	AT2B2_HUMAN	ATPase, Ca++ transporting, plasma membrane 2	427					ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|calcium ion binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			breast(1)|central_nervous_system(2)|cervix(1)|endometrium(7)|large_intestine(19)|lung(29)|ovary(5)|prostate(2)|skin(4)|stomach(2)|urinary_tract(2)	74						CAGGCAGCCACGGCTTCTTGT	0.577000													16	43					0	0	1	0	0
SPATA13	221178	broad.mit.edu	37	13	24868942	24868942	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr13:24868942G>A	ENST00000424834.2	+	12	3619	c.3146G>A	c.(3145-3147)cGc>cAc	p.R1049H	SPATA13_ENST00000343003.6_Missense_Mutation_p.R368H|SPATA13_ENST00000382095.4_Missense_Mutation_p.R424H|SPATA13_ENST00000409126.1_Missense_Mutation_p.R284H|RP11-307N16.6_ENST00000382141.4_Missense_Mutation_p.R927H|SPATA13_ENST00000399949.2_Missense_Mutation_p.R346H|SPATA13_ENST00000382108.3_Missense_Mutation_p.R1049H			Q96N96	SPT13_HUMAN	spermatogenesis associated 13	424					cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity	p.R424H(1)		breast(4)|endometrium(2)|large_intestine(9)|lung(4)|ovary(1)|prostate(1)|skin(2)	23		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		ATCAACGAGCGCAAGCGCAAG	0.498000													4	35					0	0	1	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917902	48917902	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:48917902G>A	ENST00000311378.4	+	2	1781	c.1253G>A	c.(1252-1254)gGc>gAc	p.G418D	WFIKKN2_ENST00000426127.1_Missense_Mutation_p.G325D|RP11-506D12.5_ENST00000572491.2_RNA	NM_175575.5	NP_783165.1	Q8TEU8	WFKN2_HUMAN	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	418	BPTI/Kunitz inhibitor 2.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(3)|large_intestine(3)|lung(13)|ovary(4)|skin(1)	29			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			GTCTATGGTGGCTGCGAGGGC	0.667000													18	35					0	0	1	0	0
B3GAT2	135152	broad.mit.edu	37	6	71665845	71665845	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:71665845C>T	ENST00000230053.6	-	1	896	c.288G>A	c.(286-288)gcG>gcA	p.A96A		NM_080742.2	NP_542780.1	Q9NPZ5	B3GA2_HUMAN	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	96					carbohydrate biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(5)|ovary(2)|urinary_tract(1)	16						GGGTCAGCTCCGCTTTCTGCA	0.697000													7	16					0	0	1	0	0
KIAA1210	57481	broad.mit.edu	37	X	118223492	118223492	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chrX:118223492G>A	ENST00000402510.2	-	11	1700	c.1701C>T	c.(1699-1701)ggC>ggT	p.G567G		NM_020721.1	NP_065772.1	Q9ULL0	K1210_HUMAN	KIAA1210	567										breast(3)|central_nervous_system(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(9)|lung(31)|ovary(4)|prostate(2)|skin(3)|stomach(1)|urinary_tract(1)	64						CAGCTCTATCGCCCAGGCCAT	0.473000													28	47					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47725990	47725990	+	Missense_Mutation	SNP	C	C	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:47725990C>G	ENST00000360380.3	-	17	3411	c.3048G>C	c.(3046-3048)aaG>aaC	p.K1016N	STIL_ENST00000371877.3_Missense_Mutation_p.K1017N|STIL_ENST00000396221.2_Missense_Mutation_p.K999N|STIL_ENST00000337817.5_Missense_Mutation_p.K1016N|STIL_ENST00000243182.6_Missense_Mutation_p.K1016N	NM_001282936.1	NP_001269865.1	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus	1016					cell proliferation|multicellular organismal development	centrosome|cytosol				central_nervous_system(1)|endometrium(4)|kidney(3)|large_intestine(9)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(3)	36		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				GTGCATTTTTCTTCACTTTAG	0.308000													41	10					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17436131	17436131	+	Missense_Mutation	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:17436131G>A	ENST00000302539.4	-	19	2446	c.2321C>T	c.(2320-2322)tCg>tTg	p.S774L	ABCC8_ENST00000389817.3_Missense_Mutation_p.S773L	NM_000352.3	NP_000343.2	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	773	ABC transporter 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			NS(1)|breast(1)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(14)|lung(38)|ovary(1)|skin(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	67				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	TGGTTTCTGCGAAGCATAGGC	0.547000													26	37					0	0	1	0	0
IRX5	10265	broad.mit.edu	37	16	54966775	54966775	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr16:54966775G>A	ENST00000394636.4	+	2	952	c.615G>A	c.(613-615)caG>caA	p.Q205Q	IRX5_ENST00000558597.1_Silent_p.Q139Q|IRX5_ENST00000560154.1_Intron|IRX5_ENST00000320990.5_Silent_p.Q205Q			P78411	IRX5_HUMAN	iroquois homeobox 5	205					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding			kidney(3)|large_intestine(6)|lung(4)|prostate(1)	14						ACGAGCCCCAGAAGCCCGAGG	0.592000													14	41					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103007921	103007921	+	Silent	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103007921G>C	ENST00000435765.1	+	11	1317	c.906G>C	c.(904-906)ctG>ctC	p.L302L	PSMC2_ENST00000544811.1_Silent_p.L165L|PSMC2_ENST00000292644.3_Silent_p.L302L|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	302					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TGTTGGAACTGATCAATCAGC	0.453000													14	55					0	0	1	0	0
NKPD1	284353	broad.mit.edu	37	19	45656276	45656276	+	Silent	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:45656276G>C	ENST00000317951.4	-	4	1418	c.1419C>G	c.(1417-1419)ctC>ctG	p.L473L	NKPD1_ENST00000429338.1_Silent_p.L251L|NKPD1_ENST00000438936.2_Silent_p.L251L|NKPD1_ENST00000589776.1_Silent_p.L251L	NM_198478.3	NP_940880.3			NTPase, KAP family P-loop domain containing 1											endometrium(1)|lung(4)|prostate(2)|urinary_tract(1)	8		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00863)|GBM - Glioblastoma multiforme(486;0.231)		TGATGGCGTTGAGCACGCCCA	0.672000													3	7					0	0	1	0	0
PSMC2	5701	broad.mit.edu	37	7	103008417	103008417	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:103008417G>A	ENST00000435765.1	+	13	1629	c.1218G>A	c.(1216-1218)gaG>gaA	p.E406E	PSMC2_ENST00000544811.1_Silent_p.E269E|PSMC2_ENST00000292644.3_Silent_p.E406E|SLC26A5_ENST00000339444.6_Intron|SLC26A5_ENST00000393735.2_Intron|SLC26A5_ENST00000356767.4_Intron	NM_002803.3	NP_002794.1	P35998	PRS7_HUMAN	proteasome (prosome, macropain) 26S subunit, ATPase, 2	406					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	mitochondrion|nucleus|proteasome complex	ATP binding|ATPase activity|protein binding			breast(1)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(3)|lung(9)|skin(1)|upper_aerodigestive_tract(1)	21						TTGCTACCGAGAAGGATTTCT	0.423000													17	66					0	0	1	0	0
GPR156	165829	broad.mit.edu	37	3	119886517	119886517	+	Missense_Mutation	SNP	G	G	A	rs143524747	byFrequency	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr3:119886517G>A	ENST00000464295.1	-	10	2252	c.1807C>T	c.(1807-1809)Cgg>Tgg	p.R603W	GPR156_ENST00000315843.3_Missense_Mutation_p.R603W|GPR156_ENST00000461057.1_Missense_Mutation_p.R599W			Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	603	Poly-Arg.					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity	p.R603W(1)		breast(2)|endometrium(3)|kidney(1)|large_intestine(11)|lung(12)|ovary(1)|prostate(1)|skin(1)	32				GBM - Glioblastoma multiforme(114;0.19)		TGAGCTGCCCGCCTTCTCCTC	0.592000													16	43					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98136543	98136543	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr10:98136543C>T	ENST00000357947.3	-	18	2579	c.2354G>A	c.(2353-2355)gGg>gAg	p.G785E		NM_012465.3	NP_036597.1	Q9Y6L7	TLL2_HUMAN	tolloid-like 2	785	CUB 4.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			NS(1)|breast(3)|endometrium(3)|haematopoietic_and_lymphoid_tissue(3)|kidney(5)|large_intestine(15)|lung(22)|ovary(1)|pancreas(1)|prostate(1)|skin(3)	58		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		CGCCAGGGTCCCCTCCACACT	0.572000													35	15					0	0	1	0	0
HERC2P3	283755	broad.mit.edu	37	15	20588563	20588563	+	RNA	SNP	A	A	G	rs2291972	by1000genomes	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr15:20588563A>G	ENST00000428453.1	-	0	4187																				central_nervous_system(1)|endometrium(11)|kidney(2)|large_intestine(1)|lung(14)|pancreas(1)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	35						GCGGTTGCAGAAGCCCAGTAG	0.463000													3	30					0	0	1	0	0
CPSF6	11052	broad.mit.edu	37	12	69652453	69652453	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr12:69652453C>T	ENST00000435070.2	+	6	888	c.778C>T	c.(778-780)Cct>Tct	p.P260S	CPSF6_ENST00000551516.1_Intron|CPSF6_ENST00000456847.3_Intron|CPSF6_ENST00000266679.8_Missense_Mutation_p.P297S	NM_007007.2	NP_008938.2	Q16630	CPSF6_HUMAN	cleavage and polyadenylation specific factor 6, 68kDa	260	Pro-rich.				mRNA polyadenylation|protein tetramerization	mRNA cleavage factor complex|paraspeckles|ribonucleoprotein complex	mRNA binding|nucleotide binding|protein binding			endometrium(1)|large_intestine(7)|lung(8)	16	all_epithelial(5;2.47e-36)|Lung NSC(4;1.1e-32)|all_lung(4;6.26e-31)|Breast(13;1.59e-06)|Esophageal squamous(21;0.187)		Epithelial(6;4.89e-17)|BRCA - Breast invasive adenocarcinoma(5;8.5e-10)|Lung(24;6.04e-05)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|LUSC - Lung squamous cell carcinoma(43;0.171)|Kidney(9;0.241)			TCAGGTTCTGCCTCCTCCTCT	0.577000													27	842					0	0	1	0	0
KDM4A	9682	broad.mit.edu	37	1	44137208	44137208	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:44137208G>C	ENST00000372396.3	+	11	1530	c.1396G>C	c.(1396-1398)Gag>Cag	p.E466Q		NM_014663.2	NP_055478.2	O75164	KDM4A_HUMAN	lysine (K)-specific demethylase 4A	466					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			breast(2)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(6)|lung(13)|prostate(1)|skin(3)|upper_aerodigestive_tract(4)|urinary_tract(1)	37						CAAATTTGAAGAGCTTAAAAA	0.453000													5	76					0	0	1	0	0
SAE1	10055	broad.mit.edu	37	19	47646815	47646815	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:47646815C>T	ENST00000413379.3	+	2	265	c.163C>T	c.(163-165)Ctc>Ttc	p.L55F	SAE1_ENST00000270225.7_Missense_Mutation_p.L55F|SAE1_ENST00000598840.1_Missense_Mutation_p.L55F|SAE1_ENST00000392776.3_Missense_Mutation_p.L55F|SAE1_ENST00000540850.1_5'UTR	NM_001145713.1	NP_001139185.1	Q9UBE0	SAE1_HUMAN	SUMO1 activating enzyme subunit 1	55					protein sumoylation|protein ubiquitination	nucleus	ATP-dependent protein binding|enzyme activator activity|ligase activity|protein C-terminus binding|protein heterodimerization activity|ubiquitin activating enzyme activity			endometrium(3)|large_intestine(5)|lung(4)|ovary(1)	13		all_cancers(25;1.13e-05)|all_lung(116;0.000192)|all_epithelial(76;0.000274)|Lung NSC(112;0.000446)|all_neural(266;0.0652)|Ovarian(192;0.15)		all cancers(93;0.00013)|OV - Ovarian serous cystadenocarcinoma(262;0.000146)|Epithelial(262;0.00697)|GBM - Glioblastoma multiforme(486;0.0278)		TGCCAAGAATCTCATCTTGGC	0.522000													17	80					0	0	1	0	0
ZZEF1	23140	broad.mit.edu	37	17	3974013	3974013	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:3974013C>T	ENST00000381638.2	-	26	4164	c.4040G>A	c.(4039-4041)cGc>cAc	p.R1347H		NM_015113.3	NP_055928.3	O43149	ZZEF1_HUMAN	zinc finger, ZZ-type with EF-hand domain 1	1347							calcium ion binding|zinc ion binding			central_nervous_system(1)|cervix(2)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(9)|large_intestine(17)|lung(19)|ovary(3)|pancreas(1)|prostate(3)|skin(8)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(3)	84						ATCTGGAGTGCGATACACCAG	0.393000													18	42					0	0	1	0	0
SCNN1D	6339	broad.mit.edu	37	1	1222339	1222339	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:1222339G>C	ENST00000338555.2	+	5	1755	c.611G>C	c.(610-612)aGa>aCa	p.R204T	SCNN1D_ENST00000379116.5_Missense_Mutation_p.R368T|SCNN1D_ENST00000400928.3_Missense_Mutation_p.R204T|SCNN1D_ENST00000325425.8_Missense_Mutation_p.R270T					sodium channel, non-voltage-gated 1, delta subunit											lung(6)|skin(1)	7	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		AGCCGGGTCAGAGTGGGGTTC	0.701000													19	18					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34389477	34389477	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr20:34389477C>T	ENST00000374012.3	+	2	162	c.33C>T	c.(31-33)atC>atT	p.I11I	PHF20_ENST00000481202.1_3'UTR|PHF20_ENST00000439301.1_Silent_p.I11I			Q9BVI0	PHF20_HUMAN	PHD finger protein 20	11					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			breast(5)|endometrium(1)|kidney(7)|large_intestine(6)|lung(11)|ovary(3)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	39	Breast(12;0.00631)|all_lung(11;0.0145)					GACGAGGAATCAGCTTTGAAG	0.398000													12	36					0	0	1	0	0
TRMT61B	55006	broad.mit.edu	37	2	29073986	29073986	+	Missense_Mutation	SNP	G	G	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr2:29073986G>C	ENST00000306108.5	-	5	1287	c.1264C>G	c.(1264-1266)Caa>Gaa	p.Q422E		NM_017910.3	NP_060380.3	Q9BVS5	TR61B_HUMAN	tRNA methyltransferase 61 homolog B (S. cerevisiae)	422							tRNA (adenine-N1-)-methyltransferase activity			endometrium(2)|kidney(1)|large_intestine(2)|lung(8)	13						ATTTTCTCTTGAGAATCTAGT	0.363000													26	6					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202795	140202795	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr5:140202795C>T	ENST00000529859.1	+	1	1435	c.1435C>T	c.(1435-1437)Cgg>Tgg	p.R479W	PCDHA1_ENST00000394633.3_Intron|PCDHA3_ENST00000522353.2_Intron|PCDHA5_ENST00000378126.3_Missense_Mutation_p.R479W|PCDHA4_ENST00000512229.2_Intron|PCDHA4_ENST00000530339.1_Intron|PCDHA5_ENST00000529619.1_Missense_Mutation_p.R479W|PCDHA1_ENST00000504120.2_Intron|PCDHA2_ENST00000526136.1_Intron	NM_018908.2	NP_061731.1														NS(1)|autonomic_ganglia(1)|breast(2)|endometrium(4)|kidney(6)|large_intestine(8)|liver(1)|lung(22)|ovary(2)|prostate(6)|skin(4)|upper_aerodigestive_tract(3)	60			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTGTCTGCACGGGACGCGGA	0.662000													28	37					0	0	1	0	0
ANKRD13D	338692	broad.mit.edu	37	11	67068497	67068497	+	Silent	SNP	G	G	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:67068497G>A	ENST00000447274.2	+	11	2024	c.849G>A	c.(847-849)ccG>ccA	p.P283P	ANKRD13D_ENST00000515828.1_Silent_p.P20P|ANKRD13D_ENST00000514166.1_Silent_p.P283P|ANKRD13D_ENST00000511455.2_Silent_p.P370P|ANKRD13D_ENST00000308440.6_Silent_p.P283P			Q6ZTN6	AN13D_HUMAN	ankyrin repeat domain 13 family, member D	283										endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(3)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			AAGAGCACCCGCTCTCCCTGG	0.612000													15	46					0	0	1	0	0
PPFIA4	8497	broad.mit.edu	37	1	203024673	203024673	+	Missense_Mutation	SNP	C	C	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:203024673C>A	ENST00000367240.2	+	15	2407	c.1880C>A	c.(1879-1881)tCc>tAc	p.S627Y	PPFIA4_ENST00000295706.4_Missense_Mutation_p.S142Y|PPFIA4_ENST00000272198.6_Missense_Mutation_p.S142Y|PPFIA4_ENST00000414050.2_Missense_Mutation_p.S355Y|PPFIA4_ENST00000599966.1_Missense_Mutation_p.S142Y|PPFIA4_ENST00000447715.2_Missense_Mutation_p.S626Y			O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	142					cell communication	cell surface|cytoplasm	protein binding			NS(1)|autonomic_ganglia(1)|breast(3)|endometrium(6)|kidney(2)|large_intestine(8)|lung(20)|ovary(4)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	50						AAGCGTGGTTCCATCCCCACC	0.652000													11	33					0.000673444	0.000711157	1	1	0
CLEC11A	6320	broad.mit.edu	37	19	51228559	51228559	+	Missense_Mutation	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr19:51228559C>T	ENST00000599973.1	+	4	859	c.856C>T	c.(856-858)Ccc>Tcc	p.P286S	CLEC11A_ENST00000250340.4_Silent_p.R269R			Q9Y240	CLC11_HUMAN	C-type lectin domain family 11, member A	146	C-type lectin.				positive regulation of cell proliferation	cytoplasm|extracellular region	growth factor activity|sugar binding			kidney(1)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	7		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		GCTCACCCCGCCCCGAGCTCG	0.726000													9	7					0	0	1	0	0
IGKV1D-16	28901	broad.mit.edu	37	2	90139112	90139112	+	RNA	SNP	T	T	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr2:90139112T>A	ENST00000492446.1	+	0	35																											AGCATGGACATGAGGGTCCTC	0.542000													35	155					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105795422	105795422	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr11:105795422G>T	ENST00000393127.2	+	12	2220	c.1774G>T	c.(1774-1776)Gag>Tag	p.E592*	GRIA4_ENST00000530497.1_Nonsense_Mutation_p.E592*|GRIA4_ENST00000282499.5_Nonsense_Mutation_p.E592*|GRIA4_ENST00000525187.1_Nonsense_Mutation_p.E592*	NM_001077243.2	NP_001070711	P48058	GRIA4_HUMAN	glutamate receptor, ionotropic, AMPA 4	592					glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(5)|kidney(1)|large_intestine(24)|liver(2)|lung(25)|ovary(4)|pancreas(1)|prostate(3)|skin(5)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(6)	82		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	GCCTCCCAATGAGTTTGGCAT	0.468000													9	15					1.12685e-05	1.2093e-05	1	1	0
FBXO21	23014	broad.mit.edu	37	12	117628253	117628253	+	Silent	SNP	C	C	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr12:117628253C>T	ENST00000427718.2	-	1	83	c.9G>A	c.(7-9)gcG>gcA	p.A3A	FBXO21_ENST00000330622.5_Silent_p.A3A	NM_015002.2|NM_033624.2	NP_055817.1|NP_296373.1	O94952	FBX21_HUMAN	F-box protein 21	3					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			breast(4)|endometrium(3)|kidney(2)|large_intestine(6)|lung(8)|pancreas(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	29	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0291)		cgactgctgccgccgccATCT	0.766000													2	2					0	0	1	0	0
ILDR2	387597	broad.mit.edu	37	1	166889977	166889979	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:166889977_166889979delCTC	ENST00000271417.3	-	9	1904_1906	c.1849_1851delGAG	c.(1849-1851)gagdel	p.E617del	ILDR2_ENST00000528703.1_In_Frame_Del_p.E558del|ILDR2_ENST00000526687.1_In_Frame_Del_p.E509del|ILDR2_ENST00000469934.2_Intron|ILDR2_ENST00000529071.1_In_Frame_Del_p.E598del|ILDR2_ENST00000529387.1_Intron|ILDR2_ENST00000525740.1_In_Frame_Del_p.E490del	NM_199351.2	NP_955383.1	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor 2	617						integral to membrane				NS(3)|breast(1)|kidney(2)|large_intestine(2)|lung(9)|ovary(1)|skin(2)|upper_aerodigestive_tract(2)	22						TCCTCTTCTTCTCCGAGTTGCTG	0.685													2	4	---	---	---	---					
OR2M3	127062	broad.mit.edu	37	1	248366372	248366372	+	Translation_Start_Site	DEL	G	G	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr1:248366372delG	ENST00000456743.1	+	0	41					NM_001004689.1	NP_001004689.1	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M, member 3						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			endometrium(6)|large_intestine(4)|lung(33)|ovary(1)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)	50	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TACACATCATGGCAAGGGAGA	0.438													41	149	---	---	---	---					
CD96	10225	broad.mit.edu	37	3	111197863	111197868	+	RNA	DEL	CACACA	CACACA	-	rs71968470		TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr3:111197863_111197868delCACACA	ENST00000497896.1	-	0	208																											CGAACAGCCTcacacacacacacaca	0.544													4	5	---	---	---	---					
SDHAP1	255812	broad.mit.edu	37	3	195690462	195690463	+	RNA	INS	-	-	G			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr3:195690462_195690463insG	ENST00000427841.1	-	0	2203					NR_003264.2																						catgcgcaacaggggactgtaa	0.366													4	4	---	---	---	---					
HIST1H2BO	8348	broad.mit.edu	37	6	27861467	27861477	+	Frame_Shift_Del	DEL	GCGAGGCTTCC	GCGAGGCTTCC	-	rs145888457	byFrequency	TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:27861467_27861477delGCGAGGCTTCC	ENST00000303806.4	+	1	265_275	c.227_237delGCGAGGCTTCC	c.(226-237)ggcgaggcttccfs	p.GEAS76fs		NM_003527.4	NP_003518.2	P23527	H2B1O_HUMAN	histone cluster 1, H2bo	76					nucleosome assembly	nucleosome|nucleus	DNA binding	p.E77K(2)									CGCATCGCTGGCGAGGCTTCCCGCCTGGCGC	0.616													28	67	---	---	---	---					
IGF2R	3482	broad.mit.edu	37	6	160500714	160500721	+	Frame_Shift_Del	DEL	ACCAAGGG	ACCAAGGG	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr6:160500714_160500721delACCAAGGG	ENST00000356956.1	+	38	5729_5736	c.5581_5588delACCAAGGG	c.(5581-5589)accaaggggfs	p.TKG1861fs		NM_000876.2	NP_000867	P11717	MPRI_HUMAN	insulin-like growth factor 2 receptor	1861					receptor-mediated endocytosis	cell surface|endocytic vesicle|endosome|integral to plasma membrane|lysosomal membrane|trans-Golgi network transport vesicle	glycoprotein binding|insulin-like growth factor receptor activity|phosphoprotein binding|transporter activity			breast(2)|endometrium(15)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(27)|lung(31)|ovary(3)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)|urinary_tract(1)	95		Breast(66;0.000777)|Ovarian(120;0.0305)		OV - Ovarian serous cystadenocarcinoma(65;2.45e-17)|BRCA - Breast invasive adenocarcinoma(81;1.09e-05)		GCTCTCAGGCACCAAGGGGGCATCCTTT	0.562													8	21	---	---	---	---					
ACTL6B	51412	broad.mit.edu	37	7	100252715	100252716	+	Frame_Shift_Ins	INS	-	-	T			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr7:100252715_100252716insT	ENST00000160382.5	-	4	401_402	c.295_296insA	c.(295-297)atcfs	p.I99fs		NM_016188.4	NP_057272.1	O94805	ACL6B_HUMAN	actin-like 6B	99					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			endometrium(1)|large_intestine(3)|lung(7)|ovary(1)|skin(1)	13	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GTGATCCAGGATGGCTCGGAAG	0.599													9	30	---	---	---	---					
PABPC3	5042	broad.mit.edu	37	13	25671333	25671333	+	Frame_Shift_Del	DEL	A	A	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr13:25671333delA	ENST00000281589.3	+	1	1034	c.997delA	c.(997-999)aaafs	p.K333fs		NM_030979.2	NP_112241.2	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	333	RRM 4.				mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding	p.F335fs*19(1)		breast(1)|cervix(1)|endometrium(3)|kidney(3)|large_intestine(10)|lung(21)|ovary(4)|pancreas(1)|skin(3)	47		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		TGGTCGCAGCAAAGGGTTTGG	0.428													12	153	---	---	---	---					
TRAV9-2	28677	broad.mit.edu	37	14	22409540	22409540	+	RNA	DEL	T	T	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr14:22409540delT	ENST00000390441.2	+	0	102																											tctctctctctTTTTTTTTTT	0.428													4	5	---	---	---	---					
CREBBP	1387	broad.mit.edu	37	16	3828084	3828085	+	Frame_Shift_Ins	INS	-	-	C			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr16:3828084_3828085insC	ENST00000262367.5	-	10	2849_2850	c.2040_2041insG	c.(2038-2043)gggaacfs	p.N681fs	CREBBP_ENST00000382070.3_Frame_Shift_Ins_p.N643fs	NM_004380.2	NP_004371.2	Q92793	CBP_HUMAN	CREB binding protein	681					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			NS(1)|breast(5)|central_nervous_system(4)|cervix(3)|endometrium(12)|haematopoietic_and_lymphoid_tissue(125)|kidney(5)|large_intestine(32)|lung(43)|ovary(18)|pancreas(2)|prostate(6)|skin(9)|soft_tissue(1)|stomach(3)|upper_aerodigestive_tract(5)|urinary_tract(21)	295		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GCTGGCTGGTTCCCCAAGATGC	0.460			"""T, N, F, Mis, O"""	"""MLL, MORF, RUNXBP2"""	"""ALL, AML, DLBCL, B-NHL """		Rubinstein-Taybi syndrome						39	108	---	---	---	---					
EFCAB5	374786	broad.mit.edu	37	17	28296048	28296049	+	Frame_Shift_Ins	INS	-	-	A			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr17:28296048_28296049insA	ENST00000394835.3	+	4	622_623	c.430_431insA	c.(430-432)gaafs	p.E144fs	EFCAB5_ENST00000541045.1_Intron|EFCAB5_ENST00000536908.2_Frame_Shift_Ins_p.E88fs|EFCAB5_ENST00000378738.3_Frame_Shift_Ins_p.E144fs|EFCAB5_ENST00000394832.2_Frame_Shift_Ins_p.E144fs|EFCAB5_ENST00000534836.2_Intron|EFCAB5_ENST00000320856.5_Frame_Shift_Ins_p.E144fs	NM_198529.3	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5	144							calcium ion binding			breast(7)|endometrium(2)|kidney(4)|large_intestine(11)|lung(14)|ovary(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	43						GAAGGAACTAGAAAAAAAGGCT	0.366													6	8	---	---	---	---					
SCARF2	91179	broad.mit.edu	37	22	20785803	20785803	+	Frame_Shift_Del	DEL	C	C	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chr22:20785803delC	ENST00000405555.3	-	4	426	c.356delG	c.(355-357)ggcfs	p.G119fs	SCARF2_ENST00000266214.5_Frame_Shift_Del_p.G119fs	NM_182895.2	NP_878315.1	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2	119					cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)|central_nervous_system(1)|kidney(1)|large_intestine(1)|lung(3)|prostate(1)|skin(2)	10	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GCAGTCGGGGCCCCAGAACTG	0.716													2	4	---	---	---	---					
CUL4B	8450	broad.mit.edu	37	X	119679350	119679350	+	Frame_Shift_Del	DEL	A	A	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chrX:119679350delA	ENST00000371322.5	-	5	930	c.869delT	c.(868-870)ttgfs	p.L290fs	CUL4B_ENST00000404115.3_Frame_Shift_Del_p.L308fs|CUL4B_ENST00000336592.6_Frame_Shift_Del_p.L295fs	NM_001079872.1	NP_001073341.1	Q13620	CUL4B_HUMAN	cullin 4B	308					cell cycle|DNA repair|ubiquitin-dependent protein catabolic process	Cul4B-RING ubiquitin ligase complex|nucleus	protein binding|ubiquitin protein ligase binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(7)|lung(14)|pancreas(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	36						ATCCAGAAACAAAAAAATGCT	0.308													2	4	---	---	---	---					
RNA5-8SP6	100873336	broad.mit.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-GC-A3RD-01A-12D-A22Z-08	TCGA-GC-A3RD-10B-01D-A22Z-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7646cdea-bd75-4370-afef-81a8a0b6f194	05d7becd-5cf5-4f96-8a57-e211e00071f9	g.chrY:10037863delC	ENST00000515896.1	+	0	100																											ATCGACACTTCGAACGCACTT	0.552													5	9	---	---	---	---					
