Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB1	0	genome.wustl.edu	37	7	87145943	87145943	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	87145943	87145943	C	T	SNP	ABCB1	ENST00000265724	human	ensembl	69_37n	-1	known	missense	c.2966	p.G989E	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB1	HGNC	ENSG00000085563	141	0	0.00	168	73	30.29	-	-	-
ABCC12	0	genome.wustl.edu	37	16	48172233	48172233	+	Silent	SNP	T	T	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	16	48172233	48172233	T	C	SNP	ABCC12	ENST00000311303	human	ensembl	69_37n	-1	known	silent	c.885	p.T295	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC12	HGNC	ENSG00000140798	187	0	0.00	164	78	32.23	-	-	-
ADAMTS5	0	genome.wustl.edu	37	21	28315764	28315764	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	21	28315764	28315764	T	A	SNP	ADAMTS5	ENST00000284987	human	ensembl	69_37n	-1	known	missense	c.1340	p.D447V	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS5,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS5	HGNC	ENSG00000154736	160	0	0.00	382	100	20.75	-	-	-
ATP2B2	0	genome.wustl.edu	37	3	10417218	10417221	+	Frame_Shift_Del	DEL	GCAC	GCAC	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	GCAC	GCAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417218	10417221	GCAC	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1312_1309	p.V437fs	1.000:1.000:1.000:1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	35	0	0.00	85	23	21.30	-	-	-
ATP2B2	0	genome.wustl.edu	37	3	10417224	10417224	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417224	10417224	A	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1306	p.Y436fs	1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	34	0	0.00	77	23	23.00	-	-	-
ATP2B2	0	genome.wustl.edu	37	3	10417227	10417230	+	Frame_Shift_Del	DEL	CGGG	CGGG	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	CGGG	CGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417227	10417230	CGGG	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1303_1300	p.P434fs	0.955:0.005:0.993:0.995	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	33	0	0.00	75	23	23.47	-	-	-
ATP2B2	0	genome.wustl.edu	37	3	10417234	10417235	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	10417234	10417235	GC	-	DEL	ATP2B2	ENST00000352432	human	ensembl	69_37n	-1	known	frame_shift_del	c.1296_1295	p.C432fs	1.000:1.000	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Ca-transp_PMCA	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp_PMCA,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2B2	HGNC	ENSG00000157087	32	0	0.00	74	23	23.71	-	-	-
BACH2	0	genome.wustl.edu	37	6	90660232	90660232	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	6	90660232	90660232	G	C	SNP	BACH2	ENST00000257749	human	ensembl	69_37n	-1	known	missense	c.1593	p.D531E	0.258	NULL	pfam_BTB_POZ,pfam_bZIP_1,pfam_bZIP_2,superfamily_BTB/POZ_fold,superfamily_Euk_TF_DNA-bd,smart_BTB/POZ-like,smart_bZIP,pfscan_BTB/POZ-like,pfscan_bZIP	-	no_errors	BACH2	HGNC	ENSG00000112182	75	0	0.00	22	30	57.69	-	-	-
BDKRB1	0	genome.wustl.edu	37	14	96730708	96730708	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	14	96730708	96730708	G	A	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	+1	known	missense	c.689	p.R230Q	0.000	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	112	0	0.00	14	106	88.33	-	-	-
BZRAP1	0	genome.wustl.edu	37	17	56403701	56403701	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	56403701	56403701	G	A	SNP	BZRAP1	ENST00000355701	human	ensembl	69_37n	-1	known	missense	c.523	p.R175C	1.000	NULL	pfam_SH3_2,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain	-	no_errors	BZRAP1	HGNC	ENSG00000005379	199	0	0.00	51	271	83.90	-	-	-
CASP1	0	genome.wustl.edu	37	11	104905093	104905093	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	11	104905093	104905093	T	C	SNP	CASP1	ENST00000436863	human	ensembl	69_37n	-1	known	missense	c.116	p.E39G	1.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_cat,pfam_CARD,superfamily_DEATH-like,smart_CARD,smart_Pept_C14_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core	-	no_errors	CASP1	HGNC	ENSG00000137752	561	1	0.18	213	107	33.44	-	-	-
CCDC108	0	genome.wustl.edu	37	2	219894866	219894866	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	219894866	219894866	C	A	SNP	CCDC108	ENST00000341552	human	ensembl	69_37n	-1	known	missense	c.1226	p.C409F	0.860	NULL	superfamily_PapD-like,pfscan_Major_sperm	-	no_errors	CCDC108	HGNC	ENSG00000181378	104	0	0.00	149	44	22.80	-	-	-
CHD2	0	genome.wustl.edu	37	15	93510696	93510696	+	Silent	SNP	A	A	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	93510696	93510696	A	G	SNP	CHD2	ENST00000557381	human	ensembl	69_37n	+1	putative	silent	c.2142	p.E714	0.954	pfam_SNF2_N	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	113	0	0.00	11	27	69.23	-	-	-
CILP	0	genome.wustl.edu	37	15	65490491	65490491	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	65490491	65490491	T	A	SNP	CILP	ENST00000261883	human	ensembl	69_37n	-1	known	missense	c.2133	p.E711D	0.942	NULL	pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,superfamily_CarboxyPept-like_regulatory,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	CILP	HGNC	ENSG00000138615	138	0	0.00	20	115	85.19	-	-	-
CNOT1	0	genome.wustl.edu	37	16	58564183	58564183	+	Silent	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	16	58564183	58564183	C	T	SNP	CNOT1	ENST00000317147	human	ensembl	69_37n	-1	known	silent	c.6246	p.V2082	1.000	pfam_CCR4-Not_Not1_C	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	76	0	0.00	11	24	68.57	-	-	-
CPSF4	0	genome.wustl.edu	37	7	99045885	99045885	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	99045885	99045885	A	C	SNP	CPSF4	ENST00000292476	human	ensembl	69_37n	+1	known	missense	c.296	p.Y99S	1.000	smart_Znf_CCCH	pfam_Znf_CCCH,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCCH,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	CPSF4	HGNC	ENSG00000160917	93	0	0.00	151	42	21.76	-	-	-
CREB3	0	genome.wustl.edu	37	9	35732815	35732815	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	35732815	35732815	C	A	SNP	CREB3	ENST00000353704	human	ensembl	69_37n	+1	known	missense	c.46	p.L16M	0.999	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175	136	0	0.00	65	88	57.52	-	-	-
CXorf22	0	genome.wustl.edu	37	X	35984770	35984770	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	35984770	35984770	A	T	SNP	CXorf22	ENST00000297866	human	ensembl	69_37n	+1	known	missense	c.1499	p.D500V	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	217	0	0.00	109	94	46.08	-	-	-
EHMT1	0	genome.wustl.edu	37	9	140676797	140676797	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	140676797	140676797	T	G	SNP	EHMT1	ENST00000460843	human	ensembl	69_37n	+1	known	missense	c.2330	p.L777R	0.969	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SET_dom,pfam_Pre-SET_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SET_dom,pfscan_Pre-SET_dom,prints_Ankyrin_rpt	-	no_errors	EHMT1	HGNC	ENSG00000181090	30	0	0.00	16	13	44.83	-	-	-
ENSA	0	genome.wustl.edu	37	1	150601942	150601942	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	150601942	150601942	G	T	SNP	ENSA	ENST00000369009	human	ensembl	69_37n	-1	known	missense	c.5	p.S2Y	1.000	NULL	pfam_Endosulphine	-	no_errors	ENSA	HGNC	ENSG00000143420	154	0	0.00	251	49	16.33	-	-	-
FAN1	0	genome.wustl.edu	37	15	31229401	31229401	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	31229401	31229401	C	-	DEL	FAN1	ENST00000362065	human	ensembl	69_37n	+1	known	frame_shift_del	c.2996	p.A999fs	1.000	pfam_VRR_NUC	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690	118	0	0.00	17	36	61.02	-	-	-
FMN1	0	genome.wustl.edu	37	15	33261324	33261324	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	15	33261324	33261324	T	C	SNP	FMN1	ENST00000334528	human	ensembl	69_37n	-1	known	missense	c.1909	p.M637V	0.001	NULL	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin	-	no_errors	FMN1	HGNC	ENSG00000248905	255	0	0.00	47	93	66.43	-	-	-
FNBP4	0	genome.wustl.edu	37	11	47753019	47753019	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	11	47753019	47753019	G	C	SNP	FNBP4	ENST00000263773	human	ensembl	69_37n	-1	known	missense	c.1915	p.Q639E	0.586	NULL	pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,smart_WW_Rsp5_WWP,pfscan_WW_Rsp5_WWP	-	no_errors	FNBP4	HGNC	ENSG00000109920	261	0	0.00	366	91	19.91	-	-	-
FRMPD1	0	genome.wustl.edu	37	9	37708487	37708487	+	Silent	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	37708487	37708487	C	T	SNP	FRMPD1	ENST00000377765	human	ensembl	69_37n	+1	known	silent	c.351	p.V117	0.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_FERM_central,pfam_PDZ,pfam_FERM_N,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD1	HGNC	ENSG00000070601	76	0	0.00	72	33	31.43	-	-	-
FZD1	0	genome.wustl.edu	37	7	90895264	90895264	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	90895264	90895264	T	A	SNP	FZD1	ENST00000287934	human	ensembl	69_37n	+1	known	missense	c.1069	p.F357I	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD1	HGNC	ENSG00000157240	71	0	0.00	277	38	12.06	-	-	-
GAR1	0	genome.wustl.edu	37	4	110737351	110737351	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	4	110737351	110737351	T	G	SNP	GAR1	ENST00000226796	human	ensembl	69_37n	+1	known	missense	c.31	p.F11V	0.977	NULL	pfam_H/ACA_rnp_Gar1/Naf1,superfamily_Transl_elong_init/rib_B-barrel	-	no_errors	GAR1	HGNC	ENSG00000109534	202	0	0.00	448	82	15.47	-	-	-
GNPAT	0	genome.wustl.edu	37	1	231406515	231406515	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	231406515	231406515	G	A	SNP	GNPAT	ENST00000366647	human	ensembl	69_37n	+1	known	missense	c.1291	p.A431T	0.909	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	GNPAT	HGNC	ENSG00000116906	140	0	0.00	168	46	21.50	-	-	-
GPR174	0	genome.wustl.edu	37	X	78426996	78426996	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	78426996	78426996	T	A	SNP	GPR174	ENST00000276077	human	ensembl	69_37n	+1	known	missense	c.492	p.N164K	0.004	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor	-	no_errors	GPR174	HGNC	ENSG00000147138	177	0	0.00	105	79	42.93	-	-	-
HNRNPU	0	genome.wustl.edu	37	1	245025803	245025803	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	245025803	245025803	T	A	SNP	HNRNPU	ENST00000283179	human	ensembl	69_37n	-1	known	missense	c.837	p.E279D	1.000	superfamily_ConA-like_lec_gl,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPU	HGNC	ENSG00000153187	239	0	0.00	309	74	19.32	-	-	-
HS6ST1	0	genome.wustl.edu	37	2	129075877	129075877	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	129075877	129075877	G	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.261	p.D87E	1.000	pfam_Sulfotransferase	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	9	0	0.00	10	14	58.33	-	-	-
KIF21B	0	genome.wustl.edu	37	1	200967640	200967640	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	200967640	200967640	A	C	SNP	KIF21B	ENST00000422435	human	ensembl	69_37n	-1	known	missense	c.1949	p.I650S	0.999	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Prefoldin,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21B	HGNC	ENSG00000116852	83	0	0.00	107	35	24.65	-	-	-
LAMA3	0	genome.wustl.edu	37	18	21530014	21530014	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	18	21530014	21530014	C	T	SNP	LAMA3	ENST00000313654	human	ensembl	69_37n	+1	known	missense	c.9533	p.P3178L	0.125	superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl,superfamily_Growth_fac_rcpt,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	327	0	0.00	773	153	16.52	-	-	-
LMX1B	0	genome.wustl.edu	37	9	129458599	129458599	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	129458599	129458599	G	A	SNP	LMX1B	ENST00000355497	human	ensembl	69_37n	+1	known	missense	c.1090	p.D364N	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1B	HGNC	ENSG00000136944	62	0	0.00	59	17	22.37	-	-	-
MAGEB6	0	genome.wustl.edu	37	X	26213143	26213143	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	26213143	26213143	G	C	SNP	MAGEB6	ENST00000379034	human	ensembl	69_37n	+1	known	missense	c.1180	p.A394P	0.008	pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB6	HGNC	ENSG00000176746	106	0	0.00	63	41	39.05	-	-	-
MOGAT3	0	genome.wustl.edu	37	7	100841573	100841573	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	100841573	100841573	G	C	SNP	MOGAT3	ENST00000440203	human	ensembl	69_37n	-1	known	missense	c.567	p.I189M	0.063	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	29	0	0.00	50	17	25.37	-	-	-
MTOR	0	genome.wustl.edu	37	1	11217313	11217313	+	Silent	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	11217313	11217313	C	T	SNP	MTOR	ENST00000361445	human	ensembl	69_37n	-1	known	silent	c.4365	p.E1455	1.000	superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_DUF3385_TOR,pfam_FKBP_rapamycin-assoc_FKBP12-bd,pfam_FATC,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,superfamily_FKBP_rapamycin-assoc_FKBP12-bd,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	MTOR	HGNC	ENSG00000198793	120	0	0.00	111	50	31.06	-	-	-
MUC4	0	genome.wustl.edu	37	3	195513060	195513060	+	Silent	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	3	195513060	195513060	G	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5391	p.D1797	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	689	0	0.00	515	120	18.90	-	-	-
MXRA5	0	genome.wustl.edu	37	X	3261749	3261749	+	Silent	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	X	3261749	3261749	C	T	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	silent	c.126	p.T42	0.311	smart_LRR-contain_N	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	54	0	0.00	129	21	14.00	-	-	-
MYO15A	0	genome.wustl.edu	37	17	18022644	18022644	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	18022644	18022644	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	+1	known	missense	c.530	p.G177D	0.824	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	9	0	0.00	1	4	80.00	-	-	-
NBAS	0	genome.wustl.edu	37	2	15372613	15372613	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	15372613	15372613	C	A	SNP	NBAS	ENST00000281513	human	ensembl	69_37n	-1	known	missense	c.6169	p.G2057W	0.000	NULL	pfam_Sec39,superfamily_Quino_amine_DH_bsu	-	no_errors	NBAS	HGNC	ENSG00000151779	65	0	0.00	84	25	22.94	-	-	-
NUP35	0	genome.wustl.edu	37	2	184022174	184022174	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	184022174	184022174	T	G	SNP	NUP35	ENST00000295119	human	ensembl	69_37n	+1	known	missense	c.542	p.F181C	1.000	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002	145	0	0.00	251	52	17.16	-	-	-
PCDHGB7	0	genome.wustl.edu	37	5	140799111	140799111	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	5	140799111	140799111	T	G	SNP	PCDHGB7	ENST00000398594	human	ensembl	69_37n	+1	known	missense	c.1685	p.V562G	1.000	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGB7	HGNC	ENSG00000254122	19	0	0.00	1	9	90.00	-	-	-
POLD1	0	genome.wustl.edu	37	19	50921181	50921181	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	19	50921181	50921181	C	-	DEL	POLD1	ENST00000440232	human	ensembl	69_37n	+1	known	frame_shift_del	c.3301	p.P1102fs	0.998	NULL	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	30	0	0.00	15	12	44.44	-	-	-
PRDM4	0	genome.wustl.edu	37	12	108145695	108145695	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	12	108145695	108145695	C	G	SNP	PRDM4	ENST00000228437	human	ensembl	69_37n	-1	known	missense	c.623	p.G208A	1.000	pirsf_Znf_PRDM4	pfam_Znf_C2H2,smart_Znf_C2H2-like,pirsf_Znf_PRDM4,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM4	HGNC	ENSG00000110851	159	0	0.00	173	25	12.63	-	-	-
SEPT14	0	genome.wustl.edu	37	7	55929654	55929654	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	7	55929654	55929654	T	C	SNP	SEPT14	ENST00000388975	human	ensembl	69_37n	-1	known	missense	c.36	p.I12M	0.000	NULL	pfam_Cell_div_GTP-bd,pirsf_Septin	-	no_errors	SEPT14	HGNC	ENSG00000154997	144	0	0.00	13	76	85.39	-	-	-
SHISA6	0	genome.wustl.edu	37	17	11461131	11461131	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	11461131	11461131	G	A	SNP	SHISA6	ENST00000441885	human	ensembl	69_37n	+1	known	missense	c.1166	p.R389H	0.915	NULL	NULL	-	no_errors	SHISA6	HGNC	ENSG00000188803	12	0	0.00	3	6	66.67	-	-	-
SLC2A13	0	genome.wustl.edu	37	12	40422247	40422247	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	12	40422247	40422247	C	G	SNP	SLC2A13	ENST00000280871	human	ensembl	69_37n	-1	known	missense	c.781	p.E261Q	1.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,superfamily_Plexin-like_fold,prints_Sugar/inositol_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A13	HGNC	ENSG00000151229	78	0	0.00	58	11	15.94	-	-	-
STRBP	0	genome.wustl.edu	37	9	125898790	125898790	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	125898790	125898790	C	T	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	missense	c.1502	p.R501K	1.000	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	204	0	0.00	232	59	20.27	-	-	-
SYT16	0	genome.wustl.edu	37	14	62547769	62547769	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	14	62547769	62547769	C	T	SNP	SYT16	ENST00000430451	human	ensembl	69_37n	+1	novel	missense	c.1211	p.T404M	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	SYT16	HGNC	ENSG00000139973	81	0	0.00	3	46	93.88	-	-	-
TCEB3B	0	genome.wustl.edu	37	18	44560555	44560555	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	18	44560555	44560555	C	T	SNP	TCEB3B	ENST00000332567	human	ensembl	69_37n	-1	known	missense	c.1081	p.V361M	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	89	0	0.00	91	29	24.17	-	-	-
TCF7L1	0	genome.wustl.edu	37	2	85361198	85361198	+	Silent	SNP	C	C	G			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	2	85361198	85361198	C	G	SNP	TCF7L1	ENST00000282111	human	ensembl	69_37n	+1	known	silent	c.309	p.A103	0.997	pfam_CTNNB1-bd_N	pfam_CTNNB1-bd_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	TCF7L1	HGNC	ENSG00000152284	22	0	0.00	28	12	30.00	-	-	-
TNRC6B	0	genome.wustl.edu	37	22	40661106	40661106	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	22	40661106	40661106	A	T	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	+1	known	missense	c.872	p.D291V	0.983	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	122	0	0.00	155	80	34.04	-	-	-
TP53	0	genome.wustl.edu	37	17	7579364	7579364	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	17	7579364	7579364	C	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.323	p.G108fs	0.910	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	45	0	0.00	13	15	51.72	-	-	-
USP1	0	genome.wustl.edu	37	1	62914231	62914231	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	1	62914231	62914231	T	A	SNP	USP1	ENST00000339950	human	ensembl	69_37n	+1	known	missense	c.1516	p.C506S	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP1	HGNC	ENSG00000162607	142	0	0.00	218	46	17.42	-	-	-
VLDLR	0	genome.wustl.edu	37	9	2643403	2643403	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	9	2643403	2643403	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	+1	known	missense	c.692	p.R231H	1.000	superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	39	0	0.00	140	44	23.91	-	-	-
ZFYVE28	0	genome.wustl.edu	37	4	2321938	2321938	+	Silent	SNP	G	G	A			TCGA-A2-A04U-01A-11D-A10Y-09	TCGA-A2-A04U-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f819433a-44db-4022-abdb-d6123cfa30b2	85bbbb48-4570-41e6-9e53-b38b2d463cbf	4	2321938	2321938	G	A	SNP	ZFYVE28	ENST00000290974	human	ensembl	69_37n	-1	known	silent	c.762	p.S254	0.923	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE28	HGNC	ENSG00000159733	97	0	0.00	16	40	71.43	-	-	-
