Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACOXL	0	genome.wustl.edu	37	2	111551702	111551703	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	111551702	111551703	-	A	INS	ACOXL	ENST00000439055	human	ensembl	69_37n	+1	known	frame_shift_ins	c.296_297	p.S99fs	1.000:1.000	pfam_Acyl-CoA_Oxase/DH_cen-dom,superfamily_AcylCoA_DH/oxidase,pirsf_Acyl-CoA_oxidase	pfam_Acyl-CoA_oxidase_C,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_Oxase/DH_1,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,pirsf_Acyl-CoA_oxidase	-	no_errors	ACOXL	HGNC	ENSG00000153093	217	0	0.00	260	1150	81.56	-	-	-
ALDH16A1	0	genome.wustl.edu	37	19	49969502	49969503	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	49969502	49969503	-	G	INS	ALDH16A1	ENST00000293350	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1900_1901	p.A636fs	0.880:0.992	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,pirsf_Aldehyde_DH	-	no_errors	ALDH16A1	HGNC	ENSG00000161618	46	0	0.00	18	2	10.00	-	-	-
AP4B1	0	genome.wustl.edu	37	1	114445454	114445455	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	114445454	114445455	-	G	INS	AP4B1	ENST00000256658	human	ensembl	69_37n	-1	known	frame_shift_ins	c.144_143	p.V49fs	1.000:1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP_complex_bsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_B-adaptin_app_sub_C,superfamily_ARM-type_fold,superfamily_Coatomer/calthrin_app_sub_C,pirsf_AP_complex_bsu	-	no_errors	AP4B1	HGNC	ENSG00000134262	130	0	0.00	98	62	38.75	-	-	-
ASS1	0	genome.wustl.edu	37	9	133346274	133346274	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	133346274	133346274	G	-	DEL	ASS1	ENST00000334909	human	ensembl	69_37n	+1	known	frame_shift_del	c.549	p.N184fs	1.000	pfam_Arginosuc_synth,tigrfam_Arginosuc_synth	pfam_Arginosuc_synth,pfam_QueC,tigrfam_Arginosuc_synth	-	no_errors	ASS1	HGNC	ENSG00000130707	73	0	0.00	27	45	61.64	-	-	-
AWAT2	0	genome.wustl.edu	37	X	69262054	69262054	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	69262054	69262054	C	T	SNP	AWAT2	ENST00000276101	human	ensembl	69_37n	-1	known	missense	c.830	p.R277Q	0.002	pfam_DAGAT	pfam_DAGAT	-	no_errors	AWAT2	HGNC	ENSG00000147160	102	0	0.00	131	20	13.25	-	-	-
BCAR3	0	genome.wustl.edu	37	1	94057926	94057926	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	94057926	94057926	C	T	SNP	BCAR3	ENST00000260502	human	ensembl	69_37n	-1	known	missense	c.382	p.D128N	1.000	NULL	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	69	0	0.00	50	21	29.58	-	-	-
BMS1P5	0	genome.wustl.edu	37	10	48941207	48941207	+	RNA	SNP	T	T	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	10	48941207	48941207	T	C	SNP	BMS1P5	ENST00000436180	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RP11-508M1.3	Clone_based_vega_gene	ENSG00000204164	10	0	0.00	7	8	53.33	-	-	-
BTN3A2	0	genome.wustl.edu	37	6	26368860	26368860	+	Silent	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	26368860	26368860	C	T	SNP	BTN3A2	ENST00000356386	human	ensembl	69_37n	+1	known	silent	c.153	p.P51	0.681	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	BTN3A2	HGNC	ENSG00000186470	229	0	0.00	254	47	15.61	-	-	-
C14orf169	0	genome.wustl.edu	37	14	73958591	73958594	+	RNA	DEL	CCAG	CCAG	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	CCAG	CCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	73958591	73958594	CCAG	-	DEL	C14orf169	ENST00000531973	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000	-	-	-	no_errors	C14orf169	HGNC	ENSG00000255242	11	0	0.00	4	11	73.33	-	-	-
C19orf40	0	genome.wustl.edu	37	19	33464409	33464409	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	33464409	33464409	A	-	DEL	C19orf40	ENST00000588258	human	ensembl	69_37n	+1	known	frame_shift_del	c.184	p.T62fs	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944	204	0	0.00	93	244	66.85	-	-	-
CCND3	0	genome.wustl.edu	37	6	41909275	41909275	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909275	41909275	T	-	DEL	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_del	c.113	p.Y38fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	16	0	0.00	7	5	41.67	-	-	-
CCND3	0	genome.wustl.edu	37	6	41909280	41909281	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909280	41909281	-	A	INS	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_ins	c.108_107	p.E36fs	1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	14	0	0.00	6	4	40.00	-	-	-
CCND3	0	genome.wustl.edu	37	6	41909284	41909284	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909284	41909284	T	-	DEL	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_del	c.104	p.E35fs	1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	14	0	0.00	6	4	40.00	-	-	-
CCND3	0	genome.wustl.edu	37	6	41909290	41909291	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	41909290	41909291	-	AT	INS	CCND3	ENST00000372991	human	ensembl	69_37n	-1	known	frame_shift_ins	c.98_97	p.R33fs	1.000:1.000	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CCND3	HGNC	ENSG00000112576	12	0	0.00	5	4	44.44	-	-	-
CGNL1	0	genome.wustl.edu	37	15	57730943	57730943	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	57730943	57730943	C	T	SNP	CGNL1	ENST00000281282	human	ensembl	69_37n	+1	known	missense	c.746	p.A249V	0.128	NULL	pfam_Myosin_tail,prints_Tropomyosin	-	no_errors	CGNL1	HGNC	ENSG00000128849	102	0	0.00	72	44	37.93	-	-	-
CLHC1	0	genome.wustl.edu	37	2	55408757	55408757	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	55408757	55408757	C	A	SNP	CLHC1	ENST00000401408	human	ensembl	69_37n	-1	known	missense	c.1130	p.G377V	0.990	superfamily_ARM-type_fold,pirsf_Clathrin_heavy-chain-rel	superfamily_ARM-type_fold,pirsf_Clathrin_heavy-chain-rel	-	no_errors	CLHC1	HGNC	ENSG00000162994	99	0	0.00	100	29	22.31	-	-	-
CMIP	0	genome.wustl.edu	37	16	81739192	81739193	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	81739192	81739193	GC	-	DEL	CMIP	ENST00000537098	human	ensembl	69_37n	+1	known	frame_shift_del	c.2180_2181	p.G727fs	1.000:0.909	NULL	NULL	-	no_errors	CMIP	HGNC	ENSG00000153815	9	0	0.00	2	7	77.78	-	-	-
DENND4B	0	genome.wustl.edu	37	1	153916828	153916829	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	153916828	153916829	-	G	INS	DENND4B	ENST00000361217	human	ensembl	69_37n	-1	known	frame_shift_ins	c.23_22	p.R8fs	1.000:1.000	pfscan_uDENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	18	0	0.00	8	2	20.00	-	-	-
DIRC2	0	genome.wustl.edu	37	3	122545885	122545885	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	122545885	122545885	G	A	SNP	DIRC2	ENST00000261038	human	ensembl	69_37n	+1	known	missense	c.676	p.D226N	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	DIRC2	HGNC	ENSG00000138463	110	0	0.00	178	62	25.83	-	-	-
DNAH6	0	genome.wustl.edu	37	2	84774616	84774616	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	84774616	84774616	G	T	SNP	DNAH6	ENST00000237449	human	ensembl	69_37n	+1	known	missense	c.1066	p.V356L	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423	273	0	0.00	170	39	18.66	-	-	-
EPB41L2	0	genome.wustl.edu	37	6	131206388	131206389	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	131206388	131206389	-	T	INS	EPB41L2	ENST00000337057	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1681_1680	p.Q560fs	1.000:1.000	pirsf_Band_41_protein	pirsf_Band_41_protein,pfam_Band_4.1_C,pfam_SAB,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,prints_Band_41_fam,prints_Ez/rad/moesin,pfscan_FERM_domain	-	no_errors	EPB41L2	HGNC	ENSG00000079819	209	0	0.00	157	256	61.99	-	-	-
FAM129A	0	genome.wustl.edu	37	1	184764568	184764568	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	184764568	184764568	C	-	DEL	FAM129A	ENST00000367511	human	ensembl	69_37n	-1	known	frame_shift_del	c.2330	p.C777fs	0.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	135	0	0.00	89	56	37.58	-	-	-
GAPVD1	0	genome.wustl.edu	37	9	128117999	128117999	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	128117999	128117999	G	A	SNP	GAPVD1	ENST00000394105	human	ensembl	69_37n	+1	known	missense	c.3915	p.M1305I	1.000	NULL	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC	ENSG00000165219	62	0	0.00	65	20	23.53	-	-	-
GARNL3	0	genome.wustl.edu	37	9	130153011	130153011	+	Silent	SNP	C	C	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	130153011	130153011	C	A	SNP	GARNL3	ENST00000373387	human	ensembl	69_37n	+1	known	silent	c.2835	p.P945	0.998	NULL	pfam_Citron,pfam_Rap_GAP,smart_Citron,pfscan_Rap_GAP	-	no_errors	GARNL3	HGNC	ENSG00000136895	134	0	0.00	163	32	16.33	-	-	-
GPHN	0	genome.wustl.edu	37	14	67555794	67555794	+	Splice_Site	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	67555794	67555794	T	-	DEL	GPHN	ENST00000478722	human	ensembl	69_37n	+1	known	splice_site_del	c.1237+2	e12+2	1.000	-	-	-	no_errors	GPHN	HGNC	ENSG00000171723	104	0	0.00	71	76	49.67	-	-	-
HECTD4	0	genome.wustl.edu	37	12	112623045	112623046	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	112623045	112623046	-	C	INS	HECTD4	ENST00000377560	human	ensembl	69_37n	-1	known	frame_shift_ins	c.9209_9208	p.A3070fs	0.000:0.001	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	25	0	0.00	16	6	27.27	-	-	-
HERC2	0	genome.wustl.edu	37	15	28389827	28389828	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	28389827	28389828	GG	-	DEL	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	frame_shift_del	c.11132_11131	p.P3711fs	1.000:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	97	0	0.00	101	65	39.16	-	-	-
HERC2	0	genome.wustl.edu	37	15	28389831	28389834	+	Frame_Shift_Del	DEL	TGAT	TGAT	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	TGAT	TGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	28389831	28389834	TGAT	-	DEL	HERC2	ENST00000261609	human	ensembl	69_37n	-1	known	frame_shift_del	c.11128_11125	p.I3709fs	1.000:1.000:1.000:1.000	superfamily_CUB	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5,superfamily_UBA-like,superfamily_CUB,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	101	0	0.00	98	65	39.88	-	-	-
HSPA2	0	genome.wustl.edu	37	14	65008807	65008807	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	65008807	65008807	A	-	DEL	HSPA2	ENST00000247207	human	ensembl	69_37n	+1	known	frame_shift_del	c.1240	p.T414fs	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HSPA2	HGNC	ENSG00000126803	22	0	0.00	16	9	36.00	-	-	-
IQSEC1	0	genome.wustl.edu	37	3	12950804	12950804	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	12950804	12950804	T	-	DEL	IQSEC1	ENST00000273221	human	ensembl	69_37n	-1	known	frame_shift_del	c.2589	p.V864fs	1.000	smart_Pleckstrin_homology	pfam_Sec7,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_IQ_motif_EF-hand-BS,pfscan_Sec7	-	no_errors	IQSEC1	HGNC	ENSG00000144711	64	0	0.00	14	2	12.50	-	-	-
KATNAL2	0	genome.wustl.edu	37	18	44595970	44595973	+	Frame_Shift_Del	DEL	GGGT	GGGT	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GGGT	GGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	18	44595970	44595973	GGGT	-	DEL	KATNAL2	ENST00000245121	human	ensembl	69_37n	+1	known	frame_shift_del	c.791_792	p.L266fs	1.000:1.000	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	KATNAL2	HGNC	ENSG00000167216	207	0	0.00	193	146	42.94	-	-	-
KAZN	0	genome.wustl.edu	37	1	15392250	15392250	+	Splice_Site	SNP	G	G	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	15392250	15392250	G	A	SNP	KAZN	ENST00000376030	human	ensembl	69_37n	+1	known	splice_site	c.1222+1	e8+1	1.000	-	-	-	no_errors	KAZN	HGNC	ENSG00000189337	60	0	0.00	26	19	42.22	-	-	-
KRT8	0	genome.wustl.edu	37	12	53295661	53295662	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	53295661	53295662	-	T	INS	KRT8	ENST00000293308	human	ensembl	69_37n	-1	known	frame_shift_ins	c.520_519	p.D173fs	1.000:1.000	pfam_F,prints_Keratin_II,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	158	0	0.00	55	48	46.60	-	-	-
KRT8	0	genome.wustl.edu	37	12	53295662	53295663	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	53295662	53295663	-	T	INS	KRT8	ENST00000293308	human	ensembl	69_37n	-1	known	frame_shift_ins	c.519_518	p.D174fs	1.000:1.000	pfam_F,prints_Keratin_II,prints_Keratin_I	pfam_F,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT8	HGNC	ENSG00000170421	156	0	0.00	50	48	48.98	-	-	-
KRTAP4-9	0	genome.wustl.edu	37	17	39262140	39262140	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	39262140	39262140	C	A	SNP	KRTAP4-9	ENST00000391415	human	ensembl	69_37n	+1	known	missense	c.500	p.S167Y	0.896	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	139	0	0.00	95	26	21.49	-	-	-
LCMT2	0	genome.wustl.edu	37	15	43621743	43621743	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621743	43621743	G	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.945	p.D315fs	0.001	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	31	0	0.00	16	52	76.47	-	-	-
LCMT2	0	genome.wustl.edu	37	15	43621750	43621751	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621750	43621751	CT	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.938_937	p.R313fs	0.000:0.001	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	32	0	0.00	16	44	72.13	-	-	-
LCMT2	0	genome.wustl.edu	37	15	43621756	43621759	+	Frame_Shift_Del	DEL	GCTG	GCTG	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GCTG	GCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	43621756	43621759	GCTG	-	DEL	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	frame_shift_del	c.932_929	p.A310fs	0.998:0.999:0.995:1.000	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	31	0	0.00	12	44	78.57	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56161284	56161284	+	Splice_Site	SNP	G	G	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	56161284	56161284	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	splice_site	c.1152+1	e5+1	1.000	-	-	-	no_errors	MAP3K1	HGNC	ENSG00000095015	51	0	0.00	41	7	14.58	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56170973	56170973	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	56170973	56170973	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.1801	p.E601*	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	199	0	0.00	190	69	26.64	-	-	-
MEIS2	0	genome.wustl.edu	37	15	37186997	37186997	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	37186997	37186997	C	T	SNP	MEIS2	ENST00000424352	human	ensembl	69_37n	-1	known	missense	c.1164	p.M388I	1.000	NULL	pfam_Homeodomain,pfam_Homeobox_KN_domain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	MEIS2	HGNC	ENSG00000134138	140	0	0.00	152	96	38.71	-	-	-
METTL7A	0	genome.wustl.edu	37	12	51323842	51323842	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	51323842	51323842	C	T	SNP	METTL7A	ENST00000332160	human	ensembl	69_37n	+1	known	missense	c.644	p.A215V	0.791	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel,pfam_SAM-MeTfrase_NodS-related	-	no_errors	METTL7A	HGNC	ENSG00000185432	114	0	0.00	96	23	19.33	-	-	-
MRFAP1L1	0	genome.wustl.edu	37	4	6711224	6711224	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	4	6711224	6711224	C	T	SNP	MRFAP1L1	ENST00000320848	human	ensembl	69_37n	-1	known	missense	c.133	p.E45K	0.245	NULL	NULL	-	no_errors	MRFAP1L1	HGNC	ENSG00000178988	60	0	0.00	63	43	40.57	-	-	-
MSL3	0	genome.wustl.edu	37	X	11783689	11783689	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	11783689	11783689	C	T	SNP	MSL3	ENST00000312196	human	ensembl	69_37n	+1	known	missense	c.1012	p.R338C	1.000	pfam_MRG	pfam_MRG,pfam_Tudor-knot,superfamily_Chromodomain-like,smart_Chromo_domain/shadow	-	no_errors	MSL3	HGNC	ENSG00000005302	136	0	0.00	122	26	17.57	-	-	-
MYH10	0	genome.wustl.edu	37	17	8409779	8409780	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	8409779	8409780	-	AG	INS	MYH10	ENST00000396239	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3213_3212	p.Q1072fs	0.795:1.000	superfamily_HR1_rho-bd	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Prefoldin,superfamily_HR1_rho-bd,superfamily_UBA-like,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH10	HGNC	ENSG00000133026	211	0	0.00	116	145	55.56	-	-	-
MYH2	0	genome.wustl.edu	37	17	10436912	10436912	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	10436912	10436912	G	-	DEL	MYH2	ENST00000245503	human	ensembl	69_37n	-1	known	frame_shift_del	c.2218	p.Q740fs	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_Ribosomal_L29,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH2	HGNC	ENSG00000125414	135	0	0.00	129	213	59.66	-	-	-
MYH9	0	genome.wustl.edu	37	22	36702609	36702610	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	22	36702609	36702610	-	A	INS	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1888_1887	p.T629fs	0.996:0.985	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	24	0	0.00	19	7	26.92	-	-	-
MYO10	0	genome.wustl.edu	37	5	16935911	16935912	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	16935911	16935912	-	G	INS	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	frame_shift_ins	c.7_6	p.N2fs	1.000:0.999	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	36	0	0.00	9	5	35.71	-	-	-
MYRIP	0	genome.wustl.edu	37	3	40275393	40275393	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	40275393	40275393	T	C	SNP	MYRIP	ENST00000302541	human	ensembl	69_37n	+1	known	missense	c.1949	p.L650P	1.000	pfam_Myelin-assoc_OBP	pfam_Myelin-assoc_OBP,superfamily_Znf_FYVE_PHD,pfscan_Rab-bd_domain	-	no_errors	MYRIP	HGNC	ENSG00000170011	92	0	0.00	71	17	19.32	-	-	-
NFRKB	0	genome.wustl.edu	37	11	129752350	129752350	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	11	129752350	129752350	C	T	SNP	NFRKB	ENST00000524794	human	ensembl	69_37n	-1	known	missense	c.1153	p.E385K	1.000	NULL	NULL	-	no_errors	NFRKB	HGNC	ENSG00000170322	193	0	0.00	138	29	17.37	-	-	-
NID1	0	genome.wustl.edu	37	1	236201470	236201470	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	236201470	236201470	C	T	SNP	NID1	ENST00000264187	human	ensembl	69_37n	-1	known	missense	c.1219	p.A407T	0.000	smart_EGF-like_Ca-bd,smart_EGF-like	pfam_G2_nidogen/fibulin_G2F,pfam_LDLR_classB_rpt,pfam_Nidogen_extracell_dom,pfam_Thyroglobulin_1,pfam_EGF-like_Ca-bd,superfamily_Green_fluorescent_prot-like,superfamily_Thyroglobulin_1,smart_Nidogen_extracell_dom,smart_EGF-like_Ca-bd,smart_EGF-like,smart_G2_nidogen/fibulin_G2F,smart_Thyroglobulin_1,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thyroglobulin_1	-	no_errors	NID1	HGNC	ENSG00000116962	100	0	0.00	105	32	23.19	-	-	-
PCDHB8	0	genome.wustl.edu	37	5	140558352	140558352	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	140558352	140558352	C	T	SNP	PCDHB8	ENST00000239444	human	ensembl	69_37n	+1	known	missense	c.737	p.P246L	0.036	superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB8	HGNC	ENSG00000120322	78	0	0.00	36	33	47.83	-	-	-
PCDHGA2	0	genome.wustl.edu	37	5	140718636	140718636	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	140718636	140718636	A	-	DEL	PCDHGA2	ENST00000394576	human	ensembl	69_37n	+1	known	frame_shift_del	c.98	p.Y33fs	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	92	0	0.00	63	30	31.58	-	-	-
PDE12	0	genome.wustl.edu	37	3	57542741	57542741	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	57542741	57542741	T	-	DEL	PDE12	ENST00000311180	human	ensembl	69_37n	+1	known	frame_shift_del	c.635	p.V212fs	0.544	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	PDE12	HGNC	ENSG00000174840	47	0	0.00	44	13	20.97	-	-	-
PFKFB4	0	genome.wustl.edu	37	3	48561136	48561136	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	48561136	48561136	G	T	SNP	PFKFB4	ENST00000232375	human	ensembl	69_37n	-1	known	missense	c.1220	p.A407E	1.000	pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	57	0	0.00	95	17	15.18	-	-	-
PHF23	0	genome.wustl.edu	37	17	7139066	7139066	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	7139066	7139066	T	-	DEL	PHF23	ENST00000320316	human	ensembl	69_37n	-1	known	frame_shift_del	c.1091	p.H364fs	1.000	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633	70	0	0.00	46	67	57.76	-	-	-
PIGM	0	genome.wustl.edu	37	1	160000642	160000643	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	160000642	160000643	-	A	INS	PIGM	ENST00000368090	human	ensembl	69_37n	-1	known	frame_shift_ins	c.888_887	p.P297fs	0.948:1.000	pfam_Mannosyltransferase_DXD	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315	353	0	0.00	202	48	19.20	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178938934	178938934	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.2176	p.E726K	1.000	superfamily_Kinase-like_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	64	0	0.00	95	21	18.10	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	83	0	0.00	64	31	32.63	-	-	-
PKP1	0	genome.wustl.edu	37	1	201287868	201287868	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	201287868	201287868	A	-	DEL	PKP1	ENST00000263946	human	ensembl	69_37n	+1	known	frame_shift_del	c.1177	p.M393fs	0.994	superfamily_ARM-type_fold	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP1	HGNC	ENSG00000081277	97	0	0.00	84	129	57.33	-	-	-
PLCB2	0	genome.wustl.edu	37	15	40580976	40580977	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	15	40580976	40580977	-	G	INS	PLCB2	ENST00000260402	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3498_3497	p.E1167fs	0.029:0.000	NULL	pirsf_PLC-beta,pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLC-beta_C,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,prints_Pinositol_PLipase_C,pfscan_C2_membr_targeting,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y	-	no_errors	PLCB2	HGNC	ENSG00000137841	74	0	0.00	20	3	13.04	-	-	-
PLEKHG4	0	genome.wustl.edu	37	16	67314191	67314191	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	67314191	67314191	G	-	DEL	PLEKHG4	ENST00000360461	human	ensembl	69_37n	+1	known	frame_shift_del	c.244	p.A82fs	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG4	HGNC	ENSG00000196155	41	0	0.00	10	12	52.17	-	-	-
PLXNA3	0	genome.wustl.edu	37	X	153692649	153692650	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	153692649	153692650	-	A	INS	PLXNA3	ENST00000369682	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1821_1822	p.G607fs	0.342:0.461	NULL	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	18	0	0.00	5	7	58.33	-	-	-
PLXNB3	0	genome.wustl.edu	37	X	153037690	153037691	+	Frame_Shift_Ins	INS	-	-	AAGC			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	153037690	153037691	-	AAGC	INS	PLXNB3	ENST00000538966	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2792_2793	p.A932fs	0.987:0.958	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB3	HGNC	ENSG00000198753	14	0	0.00	4	2	33.33	-	-	-
PLXND1	0	genome.wustl.edu	37	3	129281687	129281687	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	129281687	129281687	C	-	DEL	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_del	c.4768	p.A1590fs	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	88	0	0.00	29	26	46.43	-	-	-
PLXND1	0	genome.wustl.edu	37	3	129282067	129282067	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	129282067	129282067	G	-	DEL	PLXND1	ENST00000324093	human	ensembl	69_37n	-1	known	frame_shift_del	c.4538	p.P1513fs	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom,superfamily_Rho_GTPase_activation_prot	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXND1	HGNC	ENSG00000004399	54	0	0.00	37	34	47.89	-	-	-
PMS2CL	0	genome.wustl.edu	37	7	6777566	6777568	+	Splice_Site	DEL	AGG	AGG	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	7	6777566	6777568	AGG	-	DEL	PMS2CL	ENST00000431453	human	ensembl	69_37n	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000	-	-	-	no_errors	PMS2CL	HGNC	ENSG00000187953	45	0	0.00	95	172	61.43	-	-	-
POLR1C	0	genome.wustl.edu	37	6	43484915	43484915	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	43484915	43484915	A	G	SNP	POLR1C	ENST00000372389	human	ensembl	69_37n	+1	known	missense	c.68	p.N23S	1.000	NULL	pfam_DNA-dir_RNA_pol_insert,pfam_DNA-dir_RNA_pol_dimersation,superfamily_DNA-dir_RNA_pol_RBP11-like,superfamily_DNA-dir_RNA_pol_insert,smart_DNA-dir_RNA_pol_RpoA/D/Rpb3	-	no_errors	POLR1C	HGNC	ENSG00000171453	195	0	0.00	134	35	20.71	-	-	-
RGPD4	0	genome.wustl.edu	37	2	108479275	108479275	+	Silent	SNP	A	A	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	108479275	108479275	A	G	SNP	RGPD4	ENST00000354986	human	ensembl	69_37n	+1	known	silent	c.2343	p.P781	0.994	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,superfamily_GRIP,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD4	HGNC	ENSG00000196862	27	0	0.00	21	4	16.00	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037843	10037843	+	RNA	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	Y	10037843	10037843	C	T	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	13	0	0.00	10	6	37.50	-	-	-
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037883	10037883	+	RNA	SNP	G	G	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	Y	10037883	10037883	G	A	SNP	RNA5-8SP6	ENST00000515896	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	10	0	0.00	10	6	37.50	-	-	-
SAPCD2	0	genome.wustl.edu	37	9	139960101	139960101	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	139960101	139960101	A	-	DEL	SAPCD2	ENST00000409687	human	ensembl	69_37n	-1	known	frame_shift_del	c.704	p.L235fs	1.000	NULL	NULL	-	no_errors	SAPCD2	HGNC	ENSG00000186193	25	0	0.00	13	271	89.74	-	-	-
SF3B14	0	genome.wustl.edu	37	2	24291262	24291262	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	24291262	24291262	C	-	DEL	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	frame_shift_del	c.217	p.A73fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	176	0	0.00	68	38	35.51	-	-	-
SF3B14	0	genome.wustl.edu	37	2	24291264	24291264	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	24291264	24291264	T	-	DEL	SF3B14	ENST00000233468	human	ensembl	69_37n	-1	known	frame_shift_del	c.215	p.N72fs	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	AC008073.5	Clone_based_vega_gene	ENSG00000115128	174	0	0.00	68	38	35.85	-	-	-
SNRNP200	0	genome.wustl.edu	37	2	96949670	96949671	+	Frame_Shift_Ins	INS	-	-	A			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	96949670	96949671	-	A	INS	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	frame_shift_ins	c.4465_4464	p.A1488fs	1.000:1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	58	0	0.00	57	37	39.36	-	-	-
SNTG1	0	genome.wustl.edu	37	8	51449300	51449300	+	Silent	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	8	51449300	51449300	C	T	SNP	SNTG1	ENST00000518864	human	ensembl	69_37n	+1	known	silent	c.612	p.C204	1.000	smart_Pleckstrin_homology	pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology	-	no_errors	SNTG1	HGNC	ENSG00000147481	137	0	0.00	122	22	15.28	-	-	-
SPAG6	0	genome.wustl.edu	37	10	22634774	22634775	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	10	22634774	22634775	-	C	INS	SPAG6	ENST00000376603	human	ensembl	69_37n	+1	known	frame_shift_ins	c.148_149	p.R52fs	0.000:0.000	NULL	pfam_Armadillo,pfam_HEAT,pfam_26S_Psome_nonATP_su5,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	SPAG6	HGNC	ENSG00000077327	27	0	0.00	16	2	11.11	-	-	-
SPTB	0	genome.wustl.edu	37	14	65262236	65262237	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	65262236	65262237	-	G	INS	SPTB	ENST00000389722	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1463_1462	p.L488fs	1.000:1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	69	0	0.00	55	37	40.22	-	-	-
TAGAP	0	genome.wustl.edu	37	6	159457074	159457075	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	159457074	159457075	-	T	INS	TAGAP	ENST00000367066	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1981_1980	p.S660fs	0.000:0.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	TAGAP	HGNC	ENSG00000164691	89	0	0.00	40	20	33.33	-	-	-
TBC1D9B	0	genome.wustl.edu	37	5	179302103	179302104	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	179302103	179302104	-	C	INS	TBC1D9B	ENST00000356834	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1985_1984	p.V662fs	1.000:1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_HAND_2,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	45	0	0.00	15	2	11.76	-	-	-
TCP11	0	genome.wustl.edu	37	6	35108559	35108560	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	35108559	35108560	-	G	INS	TCP11	ENST00000311875	human	ensembl	69_37n	-1	known	frame_shift_ins	c.128_127	p.Q43fs	0.000:0.004	NULL	pfam_Tcp11	-	no_errors	TCP11	HGNC	ENSG00000124678	34	0	0.00	17	3	15.00	-	-	-
TUBA3C	0	genome.wustl.edu	37	13	19752393	19752393	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	13	19752393	19752393	C	T	SNP	TUBA3C	ENST00000400113	human	ensembl	69_37n	-1	known	missense	c.368	p.R123H	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3C	HGNC	ENSG00000198033	134	0	0.00	60	16	21.05	-	-	-
ZNF48	0	genome.wustl.edu	37	16	30409493	30409494	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	30409493	30409494	-	C	INS	ZNF48	ENST00000320159	human	ensembl	69_37n	+1	known	frame_shift_ins	c.922_923	p.C308fs	1.000:1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF48	HGNC	ENSG00000180035	57	0	0.00	56	42	42.86	-	-	-
ZNF646	0	genome.wustl.edu	37	16	31088769	31088769	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	31088769	31088769	G	-	DEL	ZNF646	ENST00000300850	human	ensembl	69_37n	+1	known	frame_shift_del	c.1124	p.R375fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF646	HGNC	ENSG00000167395	20	0	0.00	8	5	38.46	-	-	-
ZNF878	0	genome.wustl.edu	37	19	12154864	12154864	+	Missense_Mutation	SNP	T	T	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	19	12154864	12154864	T	G	SNP	ZNF878	ENST00000547628	human	ensembl	69_37n	-1	novel	missense	c.1352	p.Y451S	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF878	HGNC	ENSG00000257446	108	0	0.00	109	20	15.50	-	-	-
